Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TNFRSF25	8718	broad.mit.edu	37	1	6526149	6526149	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:6526149C>A	uc001ane.2	-	1	107	c.19G>T	c.(19-21)GGC>TGC	p.G7C	TNFRSF25_uc001ana.2_Missense_Mutation_p.G7C|TNFRSF25_uc001anb.2_RNA|TNFRSF25_uc001anc.2_RNA|TNFRSF25_uc001and.2_5'UTR|TNFRSF25_uc009vlz.2_RNA|TNFRSF25_uc001anf.2_Missense_Mutation_p.G7C|TNFRSF25_uc001ang.2_Missense_Mutation_p.G7C|TNFRSF25_uc001anh.2_Missense_Mutation_p.G7C|TNFRSF25_uc001ani.1_Missense_Mutation_p.G7C	NM_003790	NP_003781	Q93038	TNR25_HUMAN	tumor necrosis factor receptor superfamily,	7					apoptosis|induction of apoptosis by extracellular signals	cytosol|extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity			central_nervous_system(2)|breast(1)	3	Ovarian(185;0.0386)|all_lung(157;0.154)	all_cancers(23;1.7e-35)|all_epithelial(116;2.78e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Colorectal(325;4.47e-05)|all_hematologic(16;0.00014)|Breast(487;0.000688)|Renal(390;0.0007)|Acute lymphoblastic leukemia(12;0.00157)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0448)		Epithelial(90;4.58e-35)|GBM - Glioblastoma multiforme(13;3.06e-27)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.3e-05)|Kidney(185;4.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000871)|BRCA - Breast invasive adenocarcinoma(365;0.00105)|STAD - Stomach adenocarcinoma(132;0.00158)|READ - Rectum adenocarcinoma(331;0.0419)		GCCGCGCAGCCCCGCGGCCGC	0.677			NA											6	7					5.4927e-09	7.7003e-09	0.004482	1	0
CAMTA1	23261	broad.mit.edu	37	1	7527940	7527940	+	Silent	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:7527940G>C	uc001aoi.2	+	6	696	c.489G>C	c.(487-489)CGG>CGC	p.R163R		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	163	CG-1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CCTTCCACCGGAGGTGCTACT	0.517			NA											46	140					0	0	0.01441	0	0
PRAMEF20	645425	broad.mit.edu	37	1	13743067	13743067	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:13743067G>C	uc009voa.1	+	2	355	c.256G>C	c.(256-258)GAT>CAT	p.D86H		NM_001099852	NP_001093322	Q5VT98	PRA20_HUMAN	PRAME family member 20	86										ovary(1)	1	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.5e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000156)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CGATGGGCTTGATGCACTGCT	0.602			NA											7	43					0	0	0.008291	0	0
PADI3	51702	broad.mit.edu	37	1	17597416	17597417	+	Missense_Mutation	DNP	CG	CG	GA			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:17597416_17597417CG>GA	uc001bai.2	+	8	914_915	c.874_875CG>GA	c.(874-876)CGA>GAA	p.R292E		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	292					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TGTGGTGTTCCGAGTGGCACCC	0.51			NA											21	37					0	0	0.004672	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181170	19181170	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:19181170T>A	uc001bba.1	-	3	795	c.794A>T	c.(793-795)CAG>CTG	p.Q265L		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	265	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	TGTGCTCTGCTGCAGCTTGTC	0.617			NA											13	22					0	0	0.004007	0	0
EPHA8	2046	broad.mit.edu	37	1	22903141	22903141	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:22903141C>A	uc001bfx.1	+	3	716	c.591C>A	c.(589-591)CTC>CTA	p.L197L	EPHA8_uc001bfw.2_Silent_p.L197L	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	197	Extracellular (Potential).|Cys-rich.					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TCCTCTCTCTCCGCATCTACT	0.622			NA											14	28					9.16793e-09	1.27308e-08	0.00499	1	0
C1QC	714	broad.mit.edu	37	1	22974075	22974075	+	Silent	SNP	C	C	T	rs150732699		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:22974075C>T	uc001bgc.3	+	3	640	c.537C>T	c.(535-537)TGC>TGT	p.C179C	C1QC_uc001bga.3_Silent_p.C179C|C1QC_uc001bgb.2_Silent_p.C179C	NM_172369	NP_758957	P02747	C1QC_HUMAN	complement component 1, q subcomponent, C chain	179	C1q.				complement activation, classical pathway|innate immune response|negative regulation of granulocyte differentiation|negative regulation of macrophage differentiation	collagen					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.21e-27)|Colorectal(126;1.5e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.61e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000538)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.196)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCAACCTGTGCGTGCTGCTGT	0.582	Ovarian(26;671 750 8290 29071 43278)		NA											6	73					0	0	0.001168	0	0
KDM1A	23028	broad.mit.edu	37	1	23405646	23405646	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:23405646G>A	uc001bgi.2	+	15	2108	c.1959G>A	c.(1957-1959)AGG>AGA	p.R653R	KDM1A_uc001bgj.2_Silent_p.R677R	NM_015013	NP_055828	O60341	KDM1A_HUMAN	lysine-specific histone demethylase 1 isoform b	653	Demethylase activity.				blood coagulation|muscle cell development|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of protein binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nuclear chromatin	androgen receptor binding|chromatin binding|enzyme binding|flavin adenine dinucleotide binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-K9 specific)|ligand-dependent nuclear receptor transcription coactivator activity|MyoD binding|oxidoreductase activity|p53 binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2						CAGTCCAAAGGATGGGATTTG	0.507			NA											14	90					0	0	0.006122	0	0
NCDN	23154	broad.mit.edu	37	1	36026262	36026262	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:36026262G>A	uc001bza.2	+	4	637	c.510G>A	c.(508-510)CGG>CGA	p.R170R	KIAA0319L_uc010ohw.1_5'Flank|NCDN_uc001bzb.2_Silent_p.R170R|NCDN_uc001bzc.2_Silent_p.R153R	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	170					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GAGGGCCTCGGCACCTCATTG	0.662			NA											3	33					0	0	0.004672	0	0
MFSD2A	84879	broad.mit.edu	37	1	40432551	40432551	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:40432551G>T	uc001cev.2	+	8	1094	c.913G>T	c.(913-915)GGC>TGC	p.G305C	MFSD2A_uc010ojb.1_Missense_Mutation_p.G253C|MFSD2A_uc001ceu.2_Missense_Mutation_p.G292C|MFSD2A_uc010ojc.1_Missense_Mutation_p.G136C|MFSD2A_uc009vvy.2_RNA|MFSD2A_uc001cex.2_5'Flank	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	305					transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						CATGAGCCACGGCCCATACAT	0.562			NA											39	69					4.14481e-20	7.12275e-20	0.00623	1	0
ATP6V0B	533	broad.mit.edu	37	1	44441782	44441782	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:44441782C>G	uc001cld.2	+	3	248	c.137C>G	c.(136-138)CCC>CGC	p.P46R	ATP6V0B_uc001clc.2_Missense_Mutation_p.P46R|ATP6V0B_uc001cle.2_5'UTR|ATP6V0B_uc001clf.2_5'UTR	NM_004047	NP_004038	Q99437	VATO_HUMAN	ATPase, H+ transporting, lysosomal 21kDa, V0	46	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	endosome membrane|integral to membrane|proton-transporting V-type ATPase, V0 domain|vacuolar membrane	hydrogen ion transmembrane transporter activity			breast(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)				GAGACTTCGCCCTTCATGTGG	0.572			NA											33	113					0	0	0.005524	0	0
CYP4A22	284541	broad.mit.edu	37	1	47611765	47611765	+	Missense_Mutation	SNP	G	G	T	rs150794228	byFrequency	TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:47611765G>T	uc001cqv.1	+	11	1355	c.1304G>T	c.(1303-1305)CGT>CTT	p.R435L	CYP4A22_uc009vyo.2_Missense_Mutation_p.R435L|CYP4A22_uc009vyp.2_Missense_Mutation_p.R337L	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	435						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GACCCTTCCCGTTTTGCACCG	0.537	Pancreas(88;1240 1470 2099 14214 37557)		NA											73	248					1.3009e-50	2.45122e-50	0.01441	1	0
TTLL7	79739	broad.mit.edu	37	1	84373287	84373287	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:84373287C>A	uc001djc.2	-	16	2240	c.1844G>T	c.(1843-1845)AGT>ATT	p.S615I	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	615					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		GGTGTCCCCACTGGAAGGTGA	0.493			NA											16	24					0.000132079	0.000151761	0.008871	1	0
BRDT	676	broad.mit.edu	37	1	92442881	92442881	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:92442881C>A	uc001dok.3	+	6	1249	c.900C>A	c.(898-900)GAC>GAA	p.D300E	BRDT_uc001dol.3_Missense_Mutation_p.D300E|BRDT_uc010osz.1_Missense_Mutation_p.D304E|BRDT_uc009wdf.2_Missense_Mutation_p.D227E|BRDT_uc010ota.1_Missense_Mutation_p.D254E|BRDT_uc010otb.1_Missense_Mutation_p.D254E|BRDT_uc001dom.3_Missense_Mutation_p.D300E	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	300	Bromo 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		ATCCTGTTGACGTTAATGCTT	0.338			NA											17	42					7.45023e-12	1.12812e-11	0.010504	1	0
AGL	178	broad.mit.edu	37	1	100350258	100350258	+	Missense_Mutation	SNP	T	T	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:100350258T>G	uc001dsi.1	+	20	3080	c.2680T>G	c.(2680-2682)TCT>GCT	p.S894A	AGL_uc001dsj.1_Missense_Mutation_p.S894A|AGL_uc001dsk.1_Missense_Mutation_p.S894A|AGL_uc001dsl.1_Missense_Mutation_p.S894A|AGL_uc001dsm.1_Missense_Mutation_p.S878A|AGL_uc001dsn.1_Missense_Mutation_p.S877A	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	894	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TCCTTTTGCTTCGTAAGTATG	0.348			NA											7	21					0	0	0.004482	0	0
COL11A1	1301	broad.mit.edu	37	1	103444427	103444427	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:103444427G>T	uc001dul.2	-	34	3016	c.2698C>A	c.(2698-2700)CCT>ACT	p.P900T	COL11A1_uc001duk.2_Missense_Mutation_p.P96T|COL11A1_uc001dum.2_Missense_Mutation_p.P912T|COL11A1_uc001dun.2_Missense_Mutation_p.P861T|COL11A1_uc009weh.2_Missense_Mutation_p.P784T	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	900	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		TTTGGCCCAGGTTTCCCAGTG	0.418			NA											32	37					3.38236e-24	5.97006e-24	0.006999	1	0
NTNG1	22854	broad.mit.edu	37	1	107867328	107867328	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:107867328A>T	uc001dvh.3	+	3	1389	c.671A>T	c.(670-672)GAA>GTA	p.E224V	NTNG1_uc001dvf.3_Missense_Mutation_p.E224V|NTNG1_uc010out.1_Missense_Mutation_p.E224V|NTNG1_uc001dvc.3_Missense_Mutation_p.E224V|NTNG1_uc001dvd.1_Missense_Mutation_p.E224V	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	224	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		ATCCACTTTGAAATCAAAGAC	0.408			NA											9	19					0	0	0.006214	0	0
FNDC7	163479	broad.mit.edu	37	1	109265024	109265024	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:109265024G>T	uc001dvx.2	+	5	666	c.666G>T	c.(664-666)TGG>TGT	p.W222C	FNDC7_uc010ova.1_5'UTR	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	223	Fibronectin type-III 3.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		CTTTTTCCTGGGCACGGGCAG	0.468			NA											9	23					0.000673444	0.000740409	0.008291	1	0
AKNAD1	254268	broad.mit.edu	37	1	109369904	109369904	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:109369904T>C	uc001dwa.2	-	11	2128	c.1859A>G	c.(1858-1860)AAG>AGG	p.K620R	AKNAD1_uc010ovb.1_Missense_Mutation_p.K327R|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	620										ovary(3)	3						TCCGTGGCCCTTTTTCTCCAC	0.413			NA											3	124					0	0	0.004672	0	0
GPR61	83873	broad.mit.edu	37	1	110086448	110086448	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:110086448C>A	uc001dxy.2	+	2	1487	c.804C>A	c.(802-804)AGC>AGA	p.S268R		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	268	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		TGGTCACCAGCTCGGGGGCCC	0.677			NA											9	39					2.17888e-05	2.56906e-05	0.006214	1	0
AMPD2	271	broad.mit.edu	37	1	110168042	110168042	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:110168042A>T	uc009wfh.1	+	3	913	c.371A>T	c.(370-372)AAG>ATG	p.K124M	AMPD2_uc009wfg.1_RNA|AMPD2_uc001dyb.1_Missense_Mutation_p.K43M|AMPD2_uc001dyc.1_Missense_Mutation_p.K124M|AMPD2_uc010ovr.1_Intron|AMPD2_uc010ovs.1_Missense_Mutation_p.K6M|AMPD2_uc001dyd.1_5'Flank	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	124					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		GGCAAATGCAAGGAGATCGCC	0.682			NA											42	117					0	0	0.01441	0	0
SLC6A17	388662	broad.mit.edu	37	1	110734689	110734689	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:110734689C>A	uc009wfq.2	+	7	1421	c.960C>A	c.(958-960)TCC>TCA	p.S320S	SLC6A17_uc001dze.1_5'Flank	NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	320	Helical; Name=6; (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		TTGCCTTCTCCAGCTACAATA	0.567			NA											9	45					1.58986e-06	1.97386e-06	0.008291	1	0
KCNA10	3744	broad.mit.edu	37	1	111061202	111061202	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:111061202A>G	uc001dzt.1	-	1	596	c.208T>C	c.(208-210)TAT>CAT	p.Y70H		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	70						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		GGGTCAGCATAGTCTCCCGGA	0.577			NA											10	42					0	0	0.013537	0	0
KCND3	3752	broad.mit.edu	37	1	112524243	112524243	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:112524243C>A	uc001ebu.1	-	2	1586	c.1106G>T	c.(1105-1107)GGG>GTG	p.G369V	KCND3_uc001ebv.1_Missense_Mutation_p.G369V	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	369	Selectivity filter (By similarity).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		GCTGACTTACCCCAGTGTGGT	0.557			NA											13	46					0.000566183	0.000628378	0.00499	1	0
HAO2	51179	broad.mit.edu	37	1	119923274	119923274	+	Translation_Start_Site	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:119923274G>T	uc001ehq.1	+	2	272	c.-80G>T	c.(-82--78)CAGGC>CATGC		HAO2_uc001ehr.1_Intron	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2						fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		ACAAGAGGCAGGCATGATCAG	0.448			NA											6	20					0.000157383	0.000179081	0.00308	1	0
TCHH	7062	broad.mit.edu	37	1	152083804	152083804	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:152083804C>A	uc001ezp.2	-	2	1889	c.1889G>T	c.(1888-1890)CGC>CTC	p.R630L	TCHH_uc009wne.1_Missense_Mutation_p.R630L	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	630	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGCTGCTGGCGCCTCTCTTC	0.677			NA											3	57					0.00909568	0.00967345	0.009096	1	0
HRNR	388697	broad.mit.edu	37	1	152187608	152187608	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:152187608G>T	uc001ezt.1	-	3	6573	c.6497C>A	c.(6496-6498)TCC>TAC	p.S2166Y		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2166	24.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGACTGACGGGAGCCAGACCC	0.627			NA											29	715					5.59293e-11	8.21417e-11	0.006999	1	0
HRNR	388697	broad.mit.edu	37	1	152192921	152192921	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:152192921C>G	uc001ezt.1	-	3	1260	c.1184G>C	c.(1183-1185)CGT>CCT	p.R395P		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	395	4.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGAAGACTGACGTGAGCTGGA	0.592			NA											6	98					0	0	0.001168	0	0
FLG	2312	broad.mit.edu	37	1	152284538	152284538	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:152284538G>T	uc001ezu.1	-	3	2860	c.2824C>A	c.(2824-2826)CAG>AAG	p.Q942K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	942	Ser-rich.|Filaggrin 5.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGGATCCCTGGCGCCTGCTT	0.562			NA							Ichthyosis				88	356					1.43847e-43	2.68452e-43	0.01441	1	0
LCE1C	353133	broad.mit.edu	37	1	152777857	152777857	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:152777857C>A	uc001fap.1	-	2	149	c.98G>T	c.(97-99)TGT>TTT	p.C33F		NM_178351	NP_848128	Q5T751	LCE1C_HUMAN	late cornified envelope 1C	33	Pro-rich.				keratinization						0	Lung NSC(65;9.06e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			cttagggggacactttggggg	0.418			NA											19	87					8.34094e-07	1.04217e-06	0.008871	1	0
INSRR	3645	broad.mit.edu	37	1	156811930	156811930	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:156811930G>T	uc010pht.1	-	19	3625	c.3371C>A	c.(3370-3372)TCC>TAC	p.S1124Y	NTRK1_uc001fqf.1_Missense_Mutation_p.D23Y|NTRK1_uc009wsi.1_5'UTR	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	1124	Cytoplasmic (Potential).|Protein kinase.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GAAGTCCTGGGACACCATGCA	0.463			NA											28	26					1.61788e-16	2.64826e-16	0.012213	1	0
INSRR	3645	broad.mit.edu	37	1	156821946	156821946	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:156821946C>A	uc010pht.1	-	3	929	c.675G>T	c.(673-675)AGG>AGT	p.R225S	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Missense_Mutation_p.R225S	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	225					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					AGCACTCGCCCCTCGCTGTGC	0.647			NA											41	36					3.16986e-14	4.99339e-14	0.01441	1	0
NTRK1	4914	broad.mit.edu	37	1	156846278	156846278	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:156846278G>T	uc001fqh.1	+	14	1775	c.1719G>T	c.(1717-1719)GTG>GTT	p.V573V	NTRK1_uc001fqf.1_Silent_p.V537V|NTRK1_uc009wsi.1_Silent_p.V272V|NTRK1_uc001fqi.1_Silent_p.V567V|NTRK1_uc009wsk.1_Silent_p.V570V	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	573	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	AGCACATCGTGCGCTTCTTCG	0.642			NA	T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			15	14					2.23348e-06	2.74386e-06	0.004007	1	0
ATP1A2	477	broad.mit.edu	37	1	160091019	160091019	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:160091019A>T	uc001fvc.2	+	3	287	c.155A>T	c.(154-156)AAA>ATA	p.K52I	ATP1A2_uc001fvb.2_Missense_Mutation_p.K52I|ATP1A2_uc010piz.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	52	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CTGGGCCGCAAATACCAAGTG	0.438			NA											71	228					0	0	0.01441	0	0
TNR	7143	broad.mit.edu	37	1	175304922	175304922	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:175304922C>A	uc001gkp.1	-	18	3637	c.3556G>T	c.(3556-3558)GGC>TGC	p.G1186C	TNR_uc009wwu.1_Missense_Mutation_p.G1186C	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	1186	Fibrinogen C-terminal.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					TCAGTTTGGCCATTCTGCCGC	0.383			NA											45	47					2.52991e-16	4.11813e-16	0.01441	1	0
PAPPA2	60676	broad.mit.edu	37	1	176668241	176668241	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:176668241C>T	uc001gkz.2	+	8	3916	c.2752C>T	c.(2752-2754)CCT>TCT	p.P918S	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	918					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCCAGGGCCTCCTGATGTGGA	0.542			NA											19	79					0	0	0.010504	0	0
PAPPA2	60676	broad.mit.edu	37	1	176740297	176740297	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:176740297G>A	uc001gkz.2	+	17	5860	c.4696G>A	c.(4696-4698)GCA>ACA	p.A1566T	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1566	Sushi 3.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GGCAGAAAGTGCAGAGGGTAA	0.458			NA											3	71					0	0	0.004672	0	0
NCF2	4688	broad.mit.edu	37	1	183556105	183556105	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:183556105G>A	uc001gqj.3	-	2	457	c.182C>T	c.(181-183)ACC>ATC	p.T61I	NCF2_uc010pod.1_Missense_Mutation_p.T61I|NCF2_uc010poe.1_Missense_Mutation_p.T61I|NCF2_uc001gqk.3_Missense_Mutation_p.T61I	NM_000433	NP_000424	P19878	NCF2_HUMAN	neutrophil cytosolic factor 2	61	TPR 1.				cellular defense response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex|nucleolus	electron carrier activity|protein C-terminus binding			ovary(3)	3						AATGCTTCTGGTAAAGGCCTG	0.532			NA											60	52					0	0	0.01441	0	0
FAM5C	339479	broad.mit.edu	37	1	190423851	190423851	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:190423851G>T	uc001gse.1	-	2	402	c.170C>A	c.(169-171)TCA>TAA	p.S57*	FAM5C_uc010pot.1_Missense_Mutation_p.H19N	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	57						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GTATTCCTGTGAGCGATGGAA	0.468			NA											9	36					2.17888e-05	2.56906e-05	0.006214	1	0
CFH	3075	broad.mit.edu	37	1	196659293	196659293	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:196659293C>A	uc001gtj.3	+	9	1500	c.1260C>A	c.(1258-1260)TAC>TAA	p.Y420*	CFH_uc001gti.3_Nonsense_Mutation_p.Y420*|CFH_uc009wyw.2_Nonsense_Mutation_p.Y395*|CFH_uc009wyx.2_Nonsense_Mutation_p.Y356*	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	420	Sushi 7.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ATCCTGGCTACGCTCTTCCAA	0.413			NA											16	56					2.94398e-08	3.92978e-08	0.007413	1	0
CFHR1	3078	broad.mit.edu	37	1	196801041	196801041	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:196801041G>A	uc001gtn.2	+	6	1019	c.905G>A	c.(904-906)CGG>CAG	p.R302Q	CFHR1_uc001gtm.2_Missense_Mutation_p.R206Q	NM_002113	NP_002104	Q03591	FHR1_HUMAN	complement factor H-related 1 precursor	302	Sushi 5.				complement activation	extracellular space					0						GTGTGTAAACGGGGATATCGT	0.383			NA											33	82					0	0	0.007835	0	0
C1orf106	55765	broad.mit.edu	37	1	200880740	200880740	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:200880740C>T	uc001gvo.2	+	9	1404	c.1374C>T	c.(1372-1374)GGC>GGT	p.G458G	C1orf106_uc010ppm.1_Silent_p.G373G	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	458										skin(2)|ovary(1)	3						AAGACAGTGGCTCTGACGTCT	0.652			NA											95	74					0	0	0.01441	0	0
KIF21B	23046	broad.mit.edu	37	1	200943242	200943242	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:200943242C>T	uc001gvs.1	-	35	5212	c.4895G>A	c.(4894-4896)CGC>CAC	p.R1632H	KIF21B_uc001gvr.1_Missense_Mutation_p.R1619H|KIF21B_uc009wzl.1_Intron|KIF21B_uc010ppn.1_Intron	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1632					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GGTGGTGGCGCGGCCCTTTAT	0.348			NA											13	17					0	0	0.001855	0	0
IGFN1	91156	broad.mit.edu	37	1	201196064	201196064	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:201196064C>A	uc001gwc.2	+	12	3093	c.2321C>A	c.(2320-2322)CCC>CAC	p.P774H	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						AGCCAGAAGCCCCGGTTCCTG	0.672			NA											31	79					1.62565e-12	2.47436e-12	0.012213	1	0
CR1L	1379	broad.mit.edu	37	1	207867838	207867838	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:207867838G>A	uc001hga.3	+	5	725	c.604G>A	c.(604-606)GAG>AAG	p.E202K	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	202	Sushi 3.					cytoplasm|extracellular region|membrane					0						GCTTGTGGGTGAGCCCTCCAT	0.483			NA											44	168					0	0	0.01441	0	0
OBSCN	84033	broad.mit.edu	37	1	228479795	228479795	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:228479795G>T	uc009xez.1	+	39	10580	c.10536G>T	c.(10534-10536)ATG>ATT	p.M3512I	OBSCN_uc001hsn.2_Missense_Mutation_p.M3512I|OBSCN_uc001hsq.1_Missense_Mutation_p.M768I	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3512	Ig-like 35.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GCCTGGCCATGGCGGACGCCG	0.622			NA											27	91					5.90632e-09	8.26039e-09	0.012213	1	0
KIAA1804	84451	broad.mit.edu	37	1	233489594	233489594	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:233489594C>A	uc001hvt.3	+	3	1289	c.1028C>A	c.(1027-1029)CCC>CAC	p.P343H	KIAA1804_uc001hvs.1_Missense_Mutation_p.P343H	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	343	Protein kinase.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GGAGAAGTCCCCTATCGGGGC	0.517			NA											3	85					0.00909568	0.00967345	0.009096	1	0
TBCE	6905	broad.mit.edu	37	1	235600748	235600748	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:235600748A>T	uc001hwz.1	+	12	1198	c.1075A>T	c.(1075-1077)ATC>TTC	p.I359F	TBCE_uc010pxq.1_RNA|TBCE_uc001hxa.1_Missense_Mutation_p.I359F|TBCE_uc010pxr.1_Missense_Mutation_p.I410F|TBCE_uc001hxb.1_Missense_Mutation_p.I246F	NM_003193	NP_003184	Q15813	TBCE_HUMAN	beta-tubulin cofactor E	359	LRRCT.				'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|nucleus|plasma membrane	chaperone binding				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;2.56e-05)			ACTACTCATTATCGCCAGCAT	0.443			NA											26	27					0	0	0.013726	0	0
ACTN2	88	broad.mit.edu	37	1	236902629	236902629	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:236902629C>T	uc001hyf.2	+	10	1108	c.904C>T	c.(904-906)CCC>TCC	p.P302S	ACTN2_uc001hyg.2_Missense_Mutation_p.P94S|ACTN2_uc009xgi.1_Missense_Mutation_p.P302S|ACTN2_uc010pxu.1_Intron|ACTN2_uc001hyh.2_5'UTR	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	302	Spectrin 1.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TCGCACGATCCCCTGGCTGGA	0.532			NA											61	87					0	0	0.01441	0	0
RYR2	6262	broad.mit.edu	37	1	237732488	237732489	+	Missense_Mutation	DNP	GG	GG	AT			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:237732488_237732489GG>AT	uc001hyl.1	+	29	3587_3588	c.3467_3468GG>AT	c.(3466-3468)TGG>TAT	p.W1156Y		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1156	Cytoplasmic (By similarity).|4 X approximate repeats.|B30.2/SPRY 2.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGGCGCTCTTGGCAAGCAGGCG	0.505			NA											19	33					0	0	0.004672	0	0
VN1R5	317705	broad.mit.edu	37	1	247420193	247420193	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:247420193C>T	uc010pyu.1	+	2	820	c.820C>T	c.(820-822)CTG>TTG	p.L274L		NM_173858	NP_776257	Q7Z5H4	VN1R5_HUMAN	vomeronasal 1 receptor 5	274	Helical; Name=6; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0	all_cancers(71;5.7e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)	all_cancers(173;0.0314)	OV - Ovarian serous cystadenocarcinoma(106;0.00854)			TATCTTACTGCTGGTGAGTTT	0.458	GBM(98;63 1399 4825 21305 33017)		NA											80	97					0	0	0.01441	0	0
OR13G1	441933	broad.mit.edu	37	1	247836166	247836166	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:247836166G>T	uc001idi.1	-	1	178	c.178C>A	c.(178-180)CTT>ATT	p.L60I		NM_001005487	NP_001005487	Q8NGZ3	O13G1_HUMAN	olfactory receptor, family 13, subfamily G,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			AGTGTCAGAAGGAAAACATAC	0.423			NA											16	20					1.00905e-13	1.56844e-13	0.008871	1	0
OR2T27	403239	broad.mit.edu	37	1	248814116	248814116	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:248814116G>A	uc010pzo.1	-	1	70	c.70C>T	c.(70-72)CCC>TCC	p.P24S		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	24	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGAAGCCAGGGGAAACGGGCG	0.493			NA											13	69					0	0	0.014323	0	0
PGBD2	267002	broad.mit.edu	37	1	249211545	249211545	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:249211545C>A	uc001ifh.2	+	3	909	c.762C>A	c.(760-762)TGC>TGA	p.C254*	PGBD2_uc001ifg.2_Nonsense_Mutation_p.C3*|PGBD2_uc009xhd.2_Nonsense_Mutation_p.C251*	NM_170725	NP_733843	Q6P3X8	PGBD2_HUMAN	hypothetical protein LOC267002 isoform a	254										ovary(1)	1	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.012)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			GGATGAACTGCAATTTCCAGA	0.473			NA											9	126					1.76689e-08	2.40791e-08	0.006214	1	0
ANKRD16	54522	broad.mit.edu	37	10	5930007	5930007	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:5930007G>C	uc010qat.1	-	2	881	c.338C>G	c.(337-339)ACA>AGA	p.T113R	ANKRD16_uc009xie.2_Missense_Mutation_p.T113R|ANKRD16_uc009xif.2_Missense_Mutation_p.T113R|ANKRD16_uc001iiq.2_Missense_Mutation_p.T113R|FBXO18_uc001iir.2_5'Flank|FBXO18_uc001iis.2_5'Flank|FBXO18_uc009xig.2_5'Flank	NM_019046	NP_061919	Q6P6B7	ANR16_HUMAN	ankyrin repeat domain 16 isoform a	113	ANK 3.										0						GTTCTTCCTTGTGCAGGCCAT	0.537			NA											11	95					0	0	0.001855	0	0
ITIH5	80760	broad.mit.edu	37	10	7708784	7708784	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:7708784C>A	uc001ijq.2	-	1	151	c.72G>T	c.(70-72)TGG>TGT	p.W24C	ITIH5_uc001ijr.1_Missense_Mutation_p.W24C	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	24					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						AAGAGTGGCCCCAGCTCTGCG	0.567			NA											27	15					4.3181e-19	7.37728e-19	0.013726	1	0
FAM171A1	221061	broad.mit.edu	37	10	15255026	15255026	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:15255026C>A	uc001iob.2	-	8	2568	c.2561G>T	c.(2560-2562)AGA>ATA	p.R854I		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	854	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GTGGGCAGATCTTCTCTGGTG	0.612			NA											25	152					1.69901e-12	2.57933e-12	0.005524	1	0
CUBN	8029	broad.mit.edu	37	10	16961963	16961963	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:16961963T>A	uc001ioo.2	-	44	6872	c.6820A>T	c.(6820-6822)AAC>TAC	p.N2274Y		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	2274	CUB 16.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	GTGACATACTTGGGTGTTACT	0.413			NA											27	19					0	0	0.012213	0	0
MRC1	4360	broad.mit.edu	37	10	17891714	17891714	+	Missense_Mutation	SNP	G	G	C	rs2478577	byFrequency	TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:17891714G>C	uc001ipk.2	+	7	1298	c.1195G>C	c.(1195-1197)GCA>CCA	p.A399P		NM_002438	NP_002429	P22897	MRC1_HUMAN	mannose receptor C type 1 precursor	399	Extracellular (Potential).|C-type lectin 2.				receptor-mediated endocytosis	endosome membrane|integral to plasma membrane	mannose binding|receptor activity				0						CAGTGACCTCGCAAGTATCCA	0.463	GBM(115;1153 1594 28187 28781 35884)		NA											39	229					0	0	0.01441	0	0
MRC1	4360	broad.mit.edu	37	10	17949621	17949621	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:17949621C>T	uc001ipk.2	+	28	4088	c.3985C>T	c.(3985-3987)CGG>TGG	p.R1329W		NM_002438	NP_002429	P22897	MRC1_HUMAN	mannose receptor C type 1 precursor	1329	Extracellular (Potential).|C-type lectin 8.				receptor-mediated endocytosis	endosome membrane|integral to plasma membrane	mannose binding|receptor activity				0						CTCTGGTGAACGGAATGATTG	0.403	GBM(115;1153 1594 28187 28781 35884)		NA											14	96					0	0	0.00278	0	0
SLC39A12	221074	broad.mit.edu	37	10	18289663	18289663	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:18289663C>A	uc001ipo.2	+	11	1941	c.1668C>A	c.(1666-1668)GGC>GGA	p.G556G	SLC39A12_uc001ipn.2_Silent_p.G519G|SLC39A12_uc001ipp.2_Silent_p.G555G|SLC39A12_uc010qck.1_Silent_p.G422G	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	556	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TTGCAGATGGCCTAGCCATAG	0.433			NA											56	37					7.50695e-29	1.36194e-28	0.01441	1	0
CACNB2	783	broad.mit.edu	37	10	18789836	18789836	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:18789836G>T	uc001ipr.2	+	5	612	c.552G>T	c.(550-552)CTG>CTT	p.L184L	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Silent_p.L184L|CACNB2_uc001ipt.2_Silent_p.L184L|CACNB2_uc010qcl.1_RNA|CACNB2_uc001ipu.2_Silent_p.L156L|CACNB2_uc001ipv.2_Silent_p.L156L|CACNB2_uc009xka.1_Silent_p.L156L|CACNB2_uc001ipw.2_Silent_p.L129L|CACNB2_uc001ipx.2_Silent_p.L129L|CACNB2_uc009xkb.1_Silent_p.L130L|CACNB2_uc010qcm.1_Silent_p.L130L|CACNB2_uc001ipz.2_Silent_p.L130L|CACNB2_uc001ipy.2_Silent_p.L130L|CACNB2_uc010qcn.1_Silent_p.L136L|CACNB2_uc010qco.1_Silent_p.L136L|CACNB2_uc001iqa.2_Silent_p.L136L	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	184					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	ACATGAGGCTGCAGCATGAAC	0.403			NA											19	40					5.03518e-11	7.43229e-11	0.007413	1	0
ARHGAP21	57584	broad.mit.edu	37	10	24885806	24885806	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:24885806T>C	uc001isb.2	-	17	3827	c.3340A>G	c.(3340-3342)ACC>GCC	p.T1114A	ARHGAP21_uc010qdb.1_RNA|ARHGAP21_uc009xkl.1_Missense_Mutation_p.T1114A	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1113					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						GGGGGACTGGTATCATCTTTT	0.343			NA											20	15					0	0	0.003954	0	0
ZEB1	6935	broad.mit.edu	37	10	31812883	31812883	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:31812883C>A	uc001ivs.3	+	8	2687	c.2624C>A	c.(2623-2625)TCA>TAA	p.S875*	ZEB1_uc001ivr.3_Nonsense_Mutation_p.S657*|ZEB1_uc010qee.1_Nonsense_Mutation_p.S657*|ZEB1_uc010qef.1_Nonsense_Mutation_p.S657*|ZEB1_uc009xlk.1_Nonsense_Mutation_p.S657*|ZEB1_uc001ivt.3_Nonsense_Mutation_p.S657*|ZEB1_uc001ivu.3_Nonsense_Mutation_p.S876*|ZEB1_uc001ivv.3_Nonsense_Mutation_p.S855*|ZEB1_uc010qeh.1_Nonsense_Mutation_p.S808*|ZEB1_uc009xlp.2_Nonsense_Mutation_p.S859*	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	875					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GATACTAGCTCAGAAGGAGTA	0.348	Ovarian(40;423 959 14296 36701 49589)		NA											6	58					0.000157383	0.000179081	0.00308	1	0
BMS1	9790	broad.mit.edu	37	10	43279882	43279882	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:43279882A>T	uc001jaj.2	+	2	398	c.40A>T	c.(40-42)AGT>TGT	p.S14C		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	14					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						AAAGAAAAACAGTGGACCCAA	0.453			NA											20	27					0	0	0.007413	0	0
GPRIN2	9721	broad.mit.edu	37	10	47000090	47000090	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:47000090G>A	uc001jec.2	+	3	1345	c.1210G>A	c.(1210-1212)GGT>AGT	p.G404S	GPRIN2_uc010qfq.1_Missense_Mutation_p.G167S	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	404											0						GGAGGTGCTCGGTGTGGCCAT	0.672			NA											3	32					0	0	0.009096	0	0
C10orf72	196740	broad.mit.edu	37	10	50227749	50227749	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:50227749G>A	uc001jhf.2	-	8	938	c.909C>T	c.(907-909)GGC>GGT	p.G303G		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	303	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						TGGTGGGGGCGCCTTTGGCAG	0.493			NA											2	34					0	0	0.004672	0	0
MBL2	4153	broad.mit.edu	37	10	54527994	54527994	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:54527994C>T	uc001jjt.2	-	4	715	c.650G>A	c.(649-651)GGT>GAT	p.G217D		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	217	C-type lectin.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						TTCATCAGAACCAGCATTGTT	0.498			NA											158	112					0	0	0.01441	0	0
MBL2	4153	broad.mit.edu	37	10	54528149	54528149	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:54528149G>T	uc001jjt.2	-	4	560	c.495C>A	c.(493-495)CCC>CCA	p.P165P		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	165	C-type lectin.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						CAGCATTCCTGGGGGTGGCCA	0.483			NA											42	44					6.08268e-21	1.04837e-20	0.01441	1	0
OIT3	170392	broad.mit.edu	37	10	74671501	74671501	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:74671501G>A	uc001jte.1	+	5	912	c.694G>A	c.(694-696)GGT>AGT	p.G232S	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	232						nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					CAATAACAATGGTGGCTGCAG	0.502	Colon(7;19 345 13446 17537)		NA											21	63					0	0	0.00278	0	0
SORCS3	22986	broad.mit.edu	37	10	106960951	106960951	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:106960951G>A	uc001kyi.1	+	16	2428	c.2201G>A	c.(2200-2202)CGA>CAA	p.R734Q	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	734	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GCCCTGGGCCGAGACCACTCA	0.488	NSCLC(116;1497 1690 7108 13108 14106)		NA											31	56					0	0	0.009535	0	0
SORCS1	114815	broad.mit.edu	37	10	108380255	108380255	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:108380255C>T	uc001kym.2	-	20	2735	c.2727G>A	c.(2725-2727)GCG>GCA	p.A909A	SORCS1_uc001kyl.2_Silent_p.A909A|SORCS1_uc009xxs.2_Silent_p.A909A|SORCS1_uc001kyn.1_Silent_p.A909A|SORCS1_uc001kyo.2_Silent_p.A909A	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	909	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		GCACTGCCGTCGCATTGACCT	0.547			NA											20	88					0	0	0.00278	0	0
PRLHR	2834	broad.mit.edu	37	10	120353836	120353837	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr10:120353836_120353837GG>TT	uc001ldp.1	-	2	1059_1060	c.920_921CC>AA	c.(919-921)GCC>GAA	p.A307E		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	307	Extracellular (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		AAGGGTCGATGGCGTGGGGGTC	0.644			NA											11	47					0	0	0.004672	0	0
AP2A2	161	broad.mit.edu	37	11	970255	970255	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:970255G>A	uc001lss.2	+	3	404	c.223G>A	c.(223-225)GGA>AGA	p.G75R	AP2A2_uc001lst.1_Missense_Mutation_p.G75R|AP2A2_uc009yco.1_RNA|AP2A2_uc001lsu.1_5'Flank	NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	75	Lipid-binding.				axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		CATTGACTTTGGACACATGGA	0.483			NA											20	47					0	0	0.010504	0	0
MUC5B	727897	broad.mit.edu	37	11	1263424	1263424	+	Silent	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:1263424T>C	uc009ycr.1	+	47	7519	c.7393T>C	c.(7393-7395)TTG>CTG	p.L2465L	MUC5B_uc001ltb.2_Silent_p.L1775L	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1772	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AATGAGCCCCTTGACTAACAC	0.622			NA											26	33					0	0	0.010818	0	0
ZNF195	7748	broad.mit.edu	37	11	3380678	3380678	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:3380678C>T	uc001lxt.2	-	6	1738	c.1560G>A	c.(1558-1560)AAG>AAA	p.K520K	uc001lxr.2_5'Flank|ZNF195_uc001lxv.2_Silent_p.K497K|ZNF195_uc001lxs.2_Silent_p.K448K|ZNF195_uc010qxr.1_Silent_p.K501K|ZNF195_uc009ydz.2_Silent_p.K475K|ZNF195_uc001lxu.2_Silent_p.K452K	NM_001130520	NP_001123992	O14628	ZN195_HUMAN	zinc finger protein 195 isoform 1	520					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Medulloblastoma(188;0.00106)|Breast(177;0.00328)|all_neural(188;0.00681)|Ovarian(85;0.00965)		BRCA - Breast invasive adenocarcinoma(625;0.0361)|LUSC - Lung squamous cell carcinoma(625;0.2)		ATTTGTAGGGCTTCTCTCCAG	0.403			NA											4	126					0	0	0.000602	0	0
OR51F2	119694	broad.mit.edu	37	11	4843021	4843021	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:4843021C>T	uc010qyn.1	+	1	406	c.406C>T	c.(406-408)CGT>TGT	p.R136C		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCCTTTGATCGTTTTGTGGC	0.463			NA											60	100					0	0	0.01441	0	0
MMP26	56547	broad.mit.edu	37	11	5011057	5011057	+	Silent	SNP	G	G	A	rs149405690	byFrequency	TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:5011057G>A	uc001lzv.2	+	2	297	c.279G>A	c.(277-279)TCG>TCA	p.S93S		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	93					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCTCCATCTCGCCAGGAAGAT	0.512			NA											11	47					0	0	0.006122	0	0
HBD	3045	broad.mit.edu	37	11	5255342	5255342	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:5255342C>A	uc001maf.1	-	2	389	c.194G>T	c.(193-195)GGC>GTC	p.G65V		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	65					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACCTTCTTGCCATGAGCCTT	0.532			NA											25	55					1.2476e-16	2.04788e-16	0.00632	1	0
OR56A5	390084	broad.mit.edu	37	11	5989392	5989392	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:5989392C>A	uc010qzu.1	-	1	333	c.333G>T	c.(331-333)CTG>CTT	p.L111L		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	111	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						ACTCCATAGTCAGAAAACTGT	0.493			NA											15	20					1.15088e-07	1.49207e-07	0.004007	1	0
OR52W1	120787	broad.mit.edu	37	11	6220836	6220836	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:6220836C>A	uc010qzz.1	+	1	383	c.383C>A	c.(382-384)GCT>GAT	p.A128D		NM_001005178	NP_001005178	Q6IF63	O52W1_HUMAN	olfactory receptor, family 52, subfamily W,	128	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;2.13e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGTGATCGTGCTGCGGCAATA	0.547			NA											17	33					3.62473e-10	5.24467e-10	0.012319	1	0
CCKBR	887	broad.mit.edu	37	11	6292607	6292607	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:6292607T>C	uc001mcp.2	+	5	1371	c.1178T>C	c.(1177-1179)ATG>ACG	p.M393T	CCKBR_uc001mcq.2_Missense_Mutation_p.M321T|CCKBR_uc001mcr.2_Intron|CCKBR_uc001mcs.2_Missense_Mutation_p.M462T	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	393	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TACTGCTTCATGCACCGTCGC	0.657			NA											29	73					0	0	0.013726	0	0
LDHC	3948	broad.mit.edu	37	11	18436732	18436732	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:18436732A>T	uc001mon.3	+	3	240	c.128A>T	c.(127-129)GAT>GTT	p.D43V	LDHC_uc001mom.3_Missense_Mutation_p.D43V|LDHC_uc009yhp.2_Missense_Mutation_p.D43V|LDHC_uc001moo.3_Intron|LDHC_uc009yhq.2_Intron|LDHC_uc009yhr.2_Intron	NM_017448	NP_059144	P07864	LDHC_HUMAN	L-lactate dehydrogenase C	43	NAD (By similarity).				glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	ATATTTTAGGATTTGGCTGAT	0.338			NA											13	25					0	0	0.007413	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955686	18955686	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:18955686C>A	uc001mpg.2	-	1	864	c.646G>T	c.(646-648)GTG>TTG	p.V216L		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	216	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						AGGATGGTCACGTACAGCCTG	0.512			NA											7	44					8.12818e-05	9.35779e-05	0.001984	1	0
NELL1	4745	broad.mit.edu	37	11	21392455	21392455	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:21392455G>T	uc001mqe.2	+	15	1759	c.1606G>T	c.(1606-1608)GTC>TTC	p.V536F	NELL1_uc001mqf.2_Missense_Mutation_p.V536F|NELL1_uc009yid.2_Missense_Mutation_p.V564F|NELL1_uc010rdo.1_Missense_Mutation_p.V479F|NELL1_uc010rdp.1_Missense_Mutation_p.V296F|NELL1_uc001mqg.2_RNA|NELL1_uc001mqh.2_Silent_p.V145V	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	536	EGF-like 4.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						CAACAAATGTGTCTGTCCATC	0.418			NA											8	23					0.000673444	0.000740409	0.008291	1	0
LRRC4C	57689	broad.mit.edu	37	11	40137471	40137471	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:40137471C>T	uc001mxa.1	-	2	2336	c.372G>A	c.(370-372)GCG>GCA	p.A124A	LRRC4C_uc001mxc.1_Silent_p.A120A|LRRC4C_uc001mxd.1_Silent_p.A120A|LRRC4C_uc001mxb.1_Silent_p.A120A	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	124					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TGTTGAGGTTCGCCAGACCAT	0.433			NA											4	22					0	0	0.009096	0	0
CHRM4	1132	broad.mit.edu	37	11	46408006	46408006	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:46408006G>A	uc001nct.1	-	1	102	c.102C>T	c.(100-102)TTC>TTT	p.F34F		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	34	Helical; Name=1; (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	CTGTGGCAATGAAGACCATTT	0.557	Esophageal Squamous(171;1020 1936 4566 30205 42542)		NA											12	75					0	0	0.00245	0	0
OR5L1	219437	broad.mit.edu	37	11	55579763	55579763	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:55579763C>A	uc001nhw.1	+	1	821	c.821C>A	c.(820-822)GCC>GAC	p.A274D		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	274	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				GACAAAGTGGCCACCGTGTTC	0.473			NA											23	36					3.85864e-22	6.72965e-22	0.00278	1	0
OR5F1	338674	broad.mit.edu	37	11	55761239	55761239	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:55761239A>G	uc010riv.1	-	1	863	c.863T>C	c.(862-864)CTG>CCG	p.L288P		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					GCTGTAGATCAGAGGATTCAA	0.428			NA											9	39					0	0	0.00333	0	0
OR8K3	219473	broad.mit.edu	37	11	56086160	56086160	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:56086160C>G	uc010rjf.1	+	1	378	c.378C>G	c.(376-378)ATC>ATG	p.I126M		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	126	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ATGTGGCCATCTGTAACCCTC	0.413			NA											32	64					0	0	0.003271	0	0
OR8J1	219477	broad.mit.edu	37	11	56127775	56127775	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:56127775C>G	uc010rjh.1	+	1	53	c.53C>G	c.(52-54)TCT>TGT	p.S18C		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ACAGGTGTCTCTAGCTGTCCA	0.478			NA											29	47					0	0	0.013726	0	0
OR5B12	390191	broad.mit.edu	37	11	58207410	58207410	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:58207410G>A	uc010rkh.1	-	1	215	c.215C>T	c.(214-216)TCC>TTC	p.S72F		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				GACAGCTGAGGAATAACCAAA	0.458			NA											12	27					0	0	0.00245	0	0
GIF	2694	broad.mit.edu	37	11	59599163	59599163	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:59599163G>T	uc001noi.2	-	8	1228	c.1180C>A	c.(1180-1182)CCT>ACT	p.P394T		NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	394	Cobalamin binding.				cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						TCATTCAAAGGTGTTACACCA	0.338	NSCLC(53;1139 1245 16872 38474 42853)		NA											31	66					9.39024e-22	1.62801e-21	0.009718	1	0
MS4A14	84689	broad.mit.edu	37	11	60182930	60182930	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:60182930G>T	uc001npj.2	+	5	1054	c.489G>T	c.(487-489)TCG>TCT	p.S163S	MS4A14_uc001npi.2_Silent_p.S51S|MS4A14_uc001npn.2_5'UTR|MS4A14_uc001npk.2_Silent_p.S146S|MS4A14_uc001npl.2_5'UTR|MS4A14_uc001npm.2_5'UTR	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	163						integral to membrane	receptor activity			breast(1)	1						TCTTGCCTTCGGATGTTACTC	0.328			NA											19	36					2.89027e-11	4.28784e-11	0.014323	1	0
MS4A1	931	broad.mit.edu	37	11	60233393	60233393	+	Splice_Site	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:60233393G>T	uc001npp.2	+	6	753	c.337_splice	c.e6-1	p.V113_splice	MS4A1_uc001npq.2_Splice_Site_p.V113_splice|MS4A1_uc009yna.2_Splice_Site_p.V113_splice|MS4A1_uc009ymz.2_Splice_Site_p.V113_splice|MS4A1_uc010rlc.1_Intron	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member						B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	CTCCATTTCAGGTCAAAGGAA	0.353			NA											8	37					1.12685e-05	1.35871e-05	0.004482	1	0
SCGB1D4	404552	broad.mit.edu	37	11	62065061	62065061	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:62065061A>G	uc001ntd.1	-	2	179	c.125T>C	c.(124-126)GTA>GCA	p.V42A		NM_206998	NP_996881	Q6XE38	SG1D4_HUMAN	secretoglobin family 1D member 4 precursor	42						extracellular region	binding				0						TTGGAGGTTTACCGCAGCGTC	0.443			NA											11	103					0	0	0.001855	0	0
CHRM1	1128	broad.mit.edu	37	11	62678015	62678015	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:62678015G>T	uc001nwi.2	-	2	959	c.558C>A	c.(556-558)CCC>CCA	p.P186P		NM_000738	NP_000729	P11229	ACM1_HUMAN	cholinergic receptor, muscarinic 1	186	Extracellular (Potential).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell proliferation|nervous system development|positive regulation of cell proliferation|protein modification process	cell junction|integral to plasma membrane|membrane fraction|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity|protein binding				0					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Benztropine(DB00245)|Bethanechol(DB01019)|Biperiden(DB00810)|Buclizine(DB00354)|Carbachol(DB00411)|Carbinoxamine(DB00748)|Cevimeline(DB00185)|Clidinium(DB00771)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Cyclopentolate(DB00979)|Cycrimine(DB00942)|Desipramine(DB01151)|Dicyclomine(DB00804)|Diphenidol(DB01231)|Doxylamine(DB00366)|Ethopropazine(DB00392)|Flavoxate(DB01148)|Glycopyrrolate(DB00986)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methantheline(DB00940)|Methotrimeprazine(DB01403)|Methylscopolamine(DB00462)|Metixene(DB00340)|Metoclopramide(DB01233)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Oxyphenonium(DB00219)|Pilocarpine(DB01085)|Pirenzepine(DB00670)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propantheline(DB00782)|Propiomazine(DB00777)|Quinacrine(DB01103)|Scopolamine(DB00747)|Solifenacin(DB01591)|Succinylcholine(DB00202)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)|Trihexyphenidyl(DB00376)|Trospium(DB00209)	AGGTGATGATGGGCTGGGAGA	0.597			NA											7	54					5.18039e-06	6.29815e-06	0.00308	1	0
SLC22A24	283238	broad.mit.edu	37	11	62911077	62911077	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:62911077C>G	uc009yop.2	-	1	617	c.175G>C	c.(175-177)GTG>CTG	p.V59L		NM_001136506	NP_001129978			solute carrier family 22, member 24												0						TTGTCAGACACAGTGTCATTG	0.512			NA											11	17					0	0	0.010729	0	0
NRXN2	9379	broad.mit.edu	37	11	64374729	64374729	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:64374729G>A	uc001oap.2	-	8	2451	c.1940C>T	c.(1939-1941)CCG>CTG	p.P647L	NRXN2_uc001oar.2_Missense_Mutation_p.P1693L|NRXN2_uc001oas.2_Missense_Mutation_p.P1623L|NRXN2_uc001oao.2_Missense_Mutation_p.P333L|NRXN2_uc001oaq.2_Missense_Mutation_p.P1360L	NM_138734	NP_620063	P58401	NRX2B_HUMAN	neurexin 2 isoform beta precursor	647	Cytoplasmic (Potential).				cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						GGGGGCAGCCGGGGCCTTCTC	0.607			NA											8	24					0	0	0.006214	0	0
TPCN2	219931	broad.mit.edu	37	11	68853220	68853220	+	Silent	SNP	G	G	A	rs148607240	byFrequency	TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:68853220G>A	uc001oos.2	+	21	2036	c.1920G>A	c.(1918-1920)GCG>GCA	p.A640A	TPCN2_uc010rqg.1_Intron|TPCN2_uc001oot.2_RNA	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	640					cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			ATGACTTTGCGGTGAGCCCTG	0.687			NA											18	65					0	0	0.012319	0	0
ANKRD42	338699	broad.mit.edu	37	11	82921358	82921358	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:82921358G>T	uc001ozz.1	+	4	685	c.263G>T	c.(262-264)GGA>GTA	p.G88V	ANKRD42_uc009yvi.1_Missense_Mutation_p.G116V|ANKRD42_uc010rsv.1_Missense_Mutation_p.G116V|ANKRD42_uc001paa.2_Missense_Mutation_p.G116V|ANKRD42_uc001pab.1_Missense_Mutation_p.G116V	NM_182603	NP_872409	Q8N9B4	ANR42_HUMAN	ankyrin repeat domain 42	88	ANK 2.									skin(1)	1						ATAATGAATGGAGCAAATCTG	0.388			NA											19	46					6.44725e-10	9.28278e-10	0.014323	1	0
GRM5	2915	broad.mit.edu	37	11	88323889	88323889	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:88323889G>T	uc001pcq.2	-	6	1770	c.1570C>A	c.(1570-1572)CGA>AGA	p.R524R	GRM5_uc009yvm.2_Silent_p.R524R	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	524	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	TCTCCCTTTCGGATCACCTAA	0.373			NA											21	59					9.86323e-18	1.64668e-17	0.003954	1	0
FAT3	120114	broad.mit.edu	37	11	92087123	92087123	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:92087123C>T	uc001pdj.3	+	1	1862	c.1845C>T	c.(1843-1845)ATC>ATT	p.I615I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	615	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGTACAAAATCATTTCTGGAA	0.363			NA								TCGA Ovarian(4;0.039)			6	10					0	0	0.00308	0	0
MTNR1B	4544	broad.mit.edu	37	11	92715180	92715180	+	Nonsense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:92715180G>A	uc001pdk.1	+	2	894	c.791G>A	c.(790-792)TGG>TAG	p.W264*		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	264	Helical; Name=6; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	GCCATCTGCTGGGCTCCACTT	0.552			NA											39	67					0	0	0.01441	0	0
PDGFD	80310	broad.mit.edu	37	11	104034583	104034583	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:104034583G>T	uc001phq.2	-	1	445	c.73C>A	c.(73-75)CCG>ACG	p.P25T	PDGFD_uc001php.2_Missense_Mutation_p.P25T	NM_025208	NP_079484	Q9GZP0	PDGFD_HUMAN	platelet derived growth factor D isoform 1	25					positive regulation of cell division	endoplasmic reticulum lumen|extracellular region|Golgi membrane	growth factor activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Melanoma(852;0.0563)|all_neural(303;0.165)		BRCA - Breast invasive adenocarcinoma(274;0.00136)|Epithelial(105;0.111)		GCGCTCTGCGGGGTTGCAGAA	0.468			NA									OREG0021315	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	29					2.61193e-14	4.12559e-14	0.009535	1	0
SCN2B	6327	broad.mit.edu	37	11	118037795	118037795	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:118037795G>T	uc001psf.2	-	4	646	c.455C>A	c.(454-456)CCT>CAT	p.P152H		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	152	Ig-like C2-type.|Extracellular (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		GTCCCGCTCAGGGGGCTCTGG	0.632			NA											17	13					2.89027e-11	4.28784e-11	0.014323	1	0
TTC36	143941	broad.mit.edu	37	11	118399492	118399492	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:118399492A>G	uc001ptg.1	+	2	293	c.293A>G	c.(292-294)CAG>CGG	p.Q98R	TTC36_uc010ryb.1_RNA|TTC36_uc010ryc.1_Missense_Mutation_p.Q39R|TMEM25_uc010ryd.1_5'Flank|TMEM25_uc001ptk.3_5'Flank|TMEM25_uc010rye.1_5'Flank|TMEM25_uc001pth.2_5'Flank|TMEM25_uc009zad.2_5'Flank|TMEM25_uc001pti.2_5'Flank|TMEM25_uc010ryf.1_5'Flank|TMEM25_uc001ptl.2_5'Flank|TMEM25_uc001ptm.2_5'Flank|TMEM25_uc001ptn.2_5'Flank	NM_001080441	NP_001073910	A6NLP5	TTC36_HUMAN	tetratricopeptide repeat domain 36	98	TPR 2.						binding				0						CGGCGACTCCAGGGAGACGTG	0.567			NA											3	48					0	0	0.009096	0	0
CBL	867	broad.mit.edu	37	11	119148982	119148982	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:119148982G>T	uc001pwe.2	+	8	1340	c.1202G>T	c.(1201-1203)TGC>TTC	p.C401F		NM_005188	NP_005179	P22681	CBL_HUMAN	Cas-Br-M (murine) ecotropic retroviral	401	Asp/Glu-rich (acidic).|RING-type.				epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of receptor-mediated endocytosis	cytosol|nucleus	calcium ion binding|sequence-specific DNA binding transcription factor activity|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding	p.E366_Q409del(13)|p.G397_I429del(1)|p.C401Y(1)|p.C401S(1)|p.E366_K477del(1)		haematopoietic_and_lymphoid_tissue(135)|lung(10)|central_nervous_system(2)|ovary(1)|breast(1)	149		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.92e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.000784)		CACCTCATGTGCACATCCTGT	0.388			NA							CBL_gene-associated_Juvenile_Myelomonocytic_Leukemia_and_Developmental_Anomalies|Noonan_syndrome				39	61					2.52991e-16	4.11813e-16	0.01441	1	0
USP2	9099	broad.mit.edu	37	11	119243549	119243549	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:119243549C>A	uc001pwm.3	-	2	937	c.642G>T	c.(640-642)CAG>CAT	p.Q214H	USP2_uc001pwn.3_Intron	NM_004205	NP_004196	O75604	UBP2_HUMAN	ubiquitin specific peptidase 2 isoform a	214					cell cycle|muscle organ development|negative regulation of transcription from RNA polymerase II promoter|positive regulation of mitotic cell cycle|protein deubiquitination|protein stabilization|ubiquitin-dependent protein catabolic process	nucleus|perinuclear region of cytoplasm	cyclin binding|cysteine-type endopeptidase activity|metal ion binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity			ovary(2)|urinary_tract(1)|skin(1)	4		all_hematologic(192;4.65e-05)|Breast(348;0.0101)|all_neural(223;0.0218)|Medulloblastoma(222;0.0425)|Renal(330;0.157)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.000513)|Colorectal(284;0.0116)|Lung(307;0.0853)|LUSC - Lung squamous cell carcinoma(976;0.0889)		AGGGAGGGGCCTGGGAGGGCA	0.632			NA											39	43					5.2432e-18	8.82907e-18	0.01441	1	0
OR6T1	219874	broad.mit.edu	37	11	123814234	123814234	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:123814234G>T	uc010sab.1	-	1	312	c.312C>A	c.(310-312)TAC>TAA	p.Y104*		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CTAGAAAGAAGTAGAGGTAGG	0.512			NA											4	30					1.23904e-05	1.48786e-05	0.000602	1	0
OR10G8	219869	broad.mit.edu	37	11	123900899	123900899	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:123900899C>T	uc001pzp.1	+	1	570	c.570C>T	c.(568-570)GAC>GAT	p.D190D		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CCTGTGCAGACACCTCAGCCA	0.507			NA											55	119					0	0	0.01441	0	0
ROBO4	54538	broad.mit.edu	37	11	124765732	124765732	+	Silent	SNP	C	C	A	rs148618121		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:124765732C>A	uc001qbg.2	-	5	896	c.756G>T	c.(754-756)CCG>CCT	p.P252P	ROBO4_uc010sas.1_Silent_p.P107P|ROBO4_uc001qbh.2_Silent_p.P142P|ROBO4_uc001qbi.2_5'Flank|ROBO4_uc010sat.1_5'Flank	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	252	Fibronectin type-III 1.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		CTGCAGGATCCGGGTTCAGCA	0.597			NA											18	41					2.94398e-08	3.92978e-08	0.007413	1	0
CACNA1C	775	broad.mit.edu	37	12	2602407	2602407	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:2602407G>T	uc009zdu.1	+	7	1281	c.968G>T	c.(967-969)GGG>GTG	p.G323V	CACNA1C_uc009zdv.1_Missense_Mutation_p.G320V|CACNA1C_uc001qkb.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkc.2_Missense_Mutation_p.G323V|CACNA1C_uc001qke.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkf.2_Missense_Mutation_p.G323V|CACNA1C_uc001qjz.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkd.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkg.2_Missense_Mutation_p.G323V|CACNA1C_uc009zdw.1_Missense_Mutation_p.G323V|CACNA1C_uc001qkh.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkl.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkn.2_Missense_Mutation_p.G323V|CACNA1C_uc001qko.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkp.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkr.2_Missense_Mutation_p.G323V|CACNA1C_uc001qku.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkq.2_Missense_Mutation_p.G323V|CACNA1C_uc001qks.2_Missense_Mutation_p.G323V|CACNA1C_uc001qkt.2_Missense_Mutation_p.G323V|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_Missense_Mutation_p.G59V|CACNA1C_uc001qkj.1_Missense_Mutation_p.G59V|CACNA1C_uc001qkk.1_Missense_Mutation_p.G59V|CACNA1C_uc001qkm.1_Missense_Mutation_p.G59V	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	323	I.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ACGGGCCACGGGCGGCAGTGC	0.607			NA											24	80					2.49675e-24	4.42022e-24	0.007291	1	0
CACNA1C	775	broad.mit.edu	37	12	2714876	2714876	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:2714876G>A	uc009zdu.1	+	25	3453	c.3140G>A	c.(3139-3141)CGG>CAG	p.R1047Q	CACNA1C_uc009zdv.1_Missense_Mutation_p.R1024Q|CACNA1C_uc001qkb.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qkc.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qke.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qkf.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qjz.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qkd.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qkg.2_Missense_Mutation_p.R1027Q|CACNA1C_uc009zdw.1_Missense_Mutation_p.R1027Q|CACNA1C_uc001qkh.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qkl.2_Missense_Mutation_p.R1047Q|CACNA1C_uc001qkn.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qko.2_Missense_Mutation_p.R1047Q|CACNA1C_uc001qkp.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qkr.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qku.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qkq.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qks.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qkt.2_Missense_Mutation_p.R1027Q|CACNA1C_uc001qka.1_Missense_Mutation_p.R562Q|CACNA1C_uc001qki.1_Missense_Mutation_p.R763Q|CACNA1C_uc001qkj.1_Missense_Mutation_p.R763Q|CACNA1C_uc001qkk.1_Missense_Mutation_p.R763Q|CACNA1C_uc001qkm.1_Missense_Mutation_p.R763Q	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1047	Cytoplasmic (Potential).|III.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GTCGCCATCCGGACCATCGGG	0.577			NA											39	53					0	0	0.01441	0	0
C12orf5	57103	broad.mit.edu	37	12	4461605	4461605	+	Silent	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:4461605A>T	uc001qmp.2	+	6	640	c.561A>T	c.(559-561)CCA>CCT	p.P187P		NM_020375	NP_065108	Q9NQ88	TIGAR_HUMAN	TP53-induced glycolysis and apoptosis regulator	187						intracellular	fructose-2,6-bisphosphate 2-phosphatase activity			skin(1)	1			all cancers(3;1.15e-07)|Colorectal(7;0.00165)|OV - Ovarian serous cystadenocarcinoma(31;0.00596)|COAD - Colon adenocarcinoma(12;0.0229)|GBM - Glioblastoma multiforme(3;0.0266)|STAD - Stomach adenocarcinoma(119;0.206)			GCGGTATTCCAGGATTAGCAG	0.423	Colon(1;100 192 35375 49454 52532)		NA											36	45					0	0	0.01441	0	0
CD163	9332	broad.mit.edu	37	12	7639150	7639150	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:7639150G>T	uc001qsz.3	-	10	2531	c.2403C>A	c.(2401-2403)CAC>CAA	p.H801Q	CD163_uc001qta.3_Missense_Mutation_p.H801Q|CD163_uc009zfw.2_Missense_Mutation_p.H834Q	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	801	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GCCCCCAGCCGTGTGAATGGC	0.483			NA											21	99					2.39556e-15	3.84603e-15	0.00278	1	0
DPPA3	359787	broad.mit.edu	37	12	7867942	7867942	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:7867942G>T	uc001qtf.2	+	2	324	c.246G>T	c.(244-246)AGG>AGT	p.R82S		NM_199286	NP_954980	Q6W0C5	DPPA3_HUMAN	stella	82						cytoplasm|nucleus					0				Kidney(36;0.0887)		TTTACAGCAGGAGAGGAGTAA	0.483			NA											18	11					2.94398e-08	3.92978e-08	0.007413	1	0
SLC2A14	144195	broad.mit.edu	37	12	7981387	7981387	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:7981387T>C	uc001qtk.2	-	11	1451	c.658A>G	c.(658-660)ATC>GTC	p.I220V	SLC2A14_uc001qtl.2_Missense_Mutation_p.I197V|SLC2A14_uc001qtm.2_Missense_Mutation_p.I197V|SLC2A14_uc010sgg.1_Missense_Mutation_p.I111V|SLC2A14_uc001qtn.2_Missense_Mutation_p.I220V|SLC2A14_uc001qto.2_Intron|SLC2A14_uc010sgh.1_Missense_Mutation_p.I235V	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	220	Helical; Name=6; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		CTTTGCAGGATAGCTGGAAGG	0.453			NA											11	70					0	0	0.00245	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716716	13716716	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:13716716G>T	uc001rbt.2	-	13	3635	c.3456C>A	c.(3454-3456)ACC>ACA	p.T1152T		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1152	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGTAGATGTCGGTCAGGTCTA	0.577			NA											8	27					5.50884e-06	6.6836e-06	0.013537	1	0
LMO3	55885	broad.mit.edu	37	12	16753644	16753644	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:16753644C>A	uc001rdk.1	-	2	591	c.151G>T	c.(151-153)GGC>TGC	p.G51C	LMO3_uc001rdj.1_Missense_Mutation_p.G62C|LMO3_uc010shy.1_Missense_Mutation_p.G69C|LMO3_uc001rdl.1_Missense_Mutation_p.G51C|LMO3_uc009zii.1_RNA|LMO3_uc010shz.1_Intron|LMO3_uc001rdm.1_Missense_Mutation_p.G51C|LMO3_uc001rdo.1_Intron|LMO3_uc001rdp.1_Intron|LMO3_uc001rdn.1_Missense_Mutation_p.G51C|LMO3_uc009zij.1_RNA|LMO3_uc009zik.1_RNA	NM_018640	NP_061110	Q8TAP4	LMO3_HUMAN	LIM domain only 3	51	LIM zinc-binding 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		zinc ion binding				0		Hepatocellular(102;0.244)				AGGGTGGAGCCCACCTCTCCC	0.483			NA											12	53					1.49906e-05	1.7891e-05	0.00245	1	0
PKP2	5318	broad.mit.edu	37	12	33049511	33049511	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:33049511T>C	uc001rlj.3	-	1	270	c.155A>G	c.(154-156)AAG>AGG	p.K52R	PKP2_uc001rlk.3_Missense_Mutation_p.K52R|PKP2_uc010skj.1_Missense_Mutation_p.K52R	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	52					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CCGCAGGCTCTTGACTGTCTG	0.726			NA											2	11					0	0	0.004672	0	0
SCN8A	6334	broad.mit.edu	37	12	52100473	52100473	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:52100473G>T	uc001ryw.2	+	11	1787	c.1609G>T	c.(1609-1611)GGG>TGG	p.G537W	SCN8A_uc010snl.1_Missense_Mutation_p.G402W|SCN8A_uc001ryx.1_Missense_Mutation_p.G402W|SCN8A_uc001ryz.1_Missense_Mutation_p.G402W|SCN8A_uc001ryy.2_Missense_Mutation_p.G402W	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	537					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	CAACAGAATAGGGAGGAAATT	0.348			NA											6	4					0.00116845	0.00127269	0.001168	1	0
PDE1B	5153	broad.mit.edu	37	12	54963089	54963089	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:54963089G>T	uc001sgd.1	+	4	515	c.349G>T	c.(349-351)GAG>TAG	p.E117*	PDE1B_uc010soz.1_5'UTR|PDE1B_uc010spa.1_Nonsense_Mutation_p.E76*|PDE1B_uc001sgf.2_5'UTR|PDE1B_uc001sge.2_Nonsense_Mutation_p.E97*|PDE1B_uc009znq.2_Intron	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	117					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCGCCGAGCAGAGGAGAAGCC	0.657			NA											9	35					0.000442599	0.000493086	0.006214	1	0
ITGA7	3679	broad.mit.edu	37	12	56094734	56094734	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:56094734G>A	uc001shh.2	-	4	839	c.619C>T	c.(619-621)CCT>TCT	p.P207S	ITGA7_uc001shg.2_Missense_Mutation_p.P207S|ITGA7_uc010sps.1_Missense_Mutation_p.P110S|ITGA7_uc009znx.2_Missense_Mutation_p.P94S	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	207	FG-GAP 3.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						TGGCTATCAGGGGAGAAGGCG	0.572			NA											11	14					0	0	0.010729	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72017243	72017243	+	Silent	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:72017243A>G	uc001swo.2	-	24	5000	c.4641T>C	c.(4639-4641)AAT>AAC	p.N1547N		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	1547					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						AAGGATTATCATTAGATGGAT	0.348			NA											14	73					0	0	0.004007	0	0
EEA1	8411	broad.mit.edu	37	12	93244898	93244898	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:93244898C>T	uc001tck.2	-	9	1052	c.787G>A	c.(787-789)GCT>ACT	p.A263T		NM_003566	NP_003557	Q15075	EEA1_HUMAN	early endosome antigen 1, 162kD	263	Potential.				early endosome to late endosome transport|synaptic vesicle to endosome fusion|vesicle fusion	cytosol|early endosome membrane|extrinsic to plasma membrane|membrane fraction	1-phosphatidylinositol binding|calmodulin binding|GTP-dependent protein binding|protein homodimerization activity|zinc ion binding			ovary(2)|skin(1)	3						TCTGAGCTAGCATATTGTGAC	0.358			NA											6	51					0	0	0.001984	0	0
CORO1C	23603	broad.mit.edu	37	12	109094945	109094945	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:109094945T>C	uc001tnj.2	-	2	246	c.150A>G	c.(148-150)ATA>ATG	p.I50M	CORO1C_uc009zva.2_Missense_Mutation_p.I103M|CORO1C_uc010sxf.1_Missense_Mutation_p.I50M	NM_014325	NP_055140	Q9ULV4	COR1C_HUMAN	coronin, actin binding protein, 1C isoform 1	50					actin cytoskeleton organization|phagocytosis|signal transduction	actin cytoskeleton	actin filament binding			skin(3)	3						CACTTGCCTCTATGATTATGG	0.473			NA											36	100					0	0	0.006999	0	0
CUX2	23316	broad.mit.edu	37	12	111760342	111760342	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:111760342C>A	uc001tsa.1	+	18	3037	c.2884C>A	c.(2884-2886)CAG>AAG	p.Q962K		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	962	CUT 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCTCTCTGACCAGCTCGGCCA	0.677			NA											6	12					2.7689e-08	3.73865e-08	0.001984	1	0
SLC24A6	80024	broad.mit.edu	37	12	113745551	113745551	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:113745551C>A	uc001tvc.2	-	13	1566	c.1356G>T	c.(1354-1356)CGG>CGT	p.R452R	SLC24A6_uc001tuz.2_Silent_p.R157R|SLC24A6_uc001tva.2_RNA|SLC24A6_uc001tvb.2_Silent_p.R190R	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	452	Helical; Name=10; (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						TGTTGCTCAGCCGGAAGACCA	0.637			NA											24	28					1.77063e-15	2.85838e-15	0.005443	1	0
TMEM132D	121256	broad.mit.edu	37	12	129563149	129563149	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr12:129563149A>T	uc009zyl.1	-	8	2373	c.2045T>A	c.(2044-2046)CTC>CAC	p.L682H	TMEM132D_uc001uia.2_Missense_Mutation_p.L220H	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	682	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TCCTGGGCTGAGCTGCAAGGA	0.567			NA											32	24					0	0	0.004289	0	0
PABPC3	5042	broad.mit.edu	37	13	25671622	25671622	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:25671622C>A	uc001upy.2	+	1	1347	c.1286C>A	c.(1285-1287)CCT>CAT	p.P429H		NM_030979	NP_112241	Q9H361	PABP3_HUMAN	poly(A) binding protein, cytoplasmic 3	429					mRNA metabolic process	cytoplasm	nucleotide binding|poly(A) RNA binding			ovary(3)|skin(1)	4		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.0071)|Epithelial(112;0.0398)|OV - Ovarian serous cystadenocarcinoma(117;0.151)|GBM - Glioblastoma multiforme(144;0.222)|Lung(94;0.241)		AGACCAAGTCCTCGCTGGACT	0.512			NA											17	152					2.98393e-07	3.82622e-07	0.00278	1	0
MTMR6	9107	broad.mit.edu	37	13	25826072	25826072	+	Missense_Mutation	SNP	T	T	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:25826072T>G	uc001uqf.3	-	12	1716	c.1397A>C	c.(1396-1398)AAG>ACG	p.K466T	MTMR6_uc001uqe.1_Missense_Mutation_p.K466T	NM_004685	NP_004676	Q9Y217	MTMR6_HUMAN	myotubularin related protein 6	466	Myotubularin phosphatase.					cytoplasm|nuclear envelope	calcium-activated potassium channel activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)|skin(2)	4		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.00927)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.164)		TAAGTACTTCTTTTGGTCTTC	0.348			NA											59	60					0	0	0.01441	0	0
PCDH17	27253	broad.mit.edu	37	13	58206761	58206761	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:58206761G>T	uc001vhq.1	+	1	973	c.81G>T	c.(79-81)GAG>GAT	p.E27D	PCDH17_uc010aec.1_Missense_Mutation_p.E27D	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	27	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		CCGTGCCGGAGGAGCAAGGGG	0.632	Melanoma(72;952 1291 1619 12849 33676)		NA											10	5					0.000673444	0.000740409	0.008291	1	0
TBC1D4	9882	broad.mit.edu	37	13	75861045	75861045	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:75861045C>G	uc001vjl.1	-	21	4127	c.3780G>C	c.(3778-3780)AAG>AAC	p.K1260N	TBC1D4_uc010tht.1_Missense_Mutation_p.K470N|TBC1D4_uc010thu.1_Missense_Mutation_p.K417N|TBC1D4_uc010aer.2_Missense_Mutation_p.K1252N|TBC1D4_uc010aes.2_Missense_Mutation_p.K1197N	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	1260						cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		GCTCCACTGTCTTTTGATAAG	0.463			NA											10	35					0	0	0.010729	0	0
SLITRK5	26050	broad.mit.edu	37	13	88328774	88328774	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:88328774G>T	uc001vln.2	+	2	1350	c.1131G>T	c.(1129-1131)GCG>GCT	p.A377A	SLITRK5_uc010tic.1_Silent_p.A136A	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	377	Extracellular (Potential).|LRRNT.					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					GTCCCACCGCGTGCTCTTGCA	0.577			NA											16	22					3.99206e-14	6.2717e-14	0.007413	1	0
DCT	1638	broad.mit.edu	37	13	95121220	95121220	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:95121220C>A	uc001vlv.3	-	2	802	c.375G>T	c.(373-375)GTG>GTT	p.V125V	DCT_uc010afh.2_Silent_p.V125V	NM_001922	NP_001913	P40126	TYRP2_HUMAN	dopachrome tautomerase isoform 1	125	Lumenal, melanosome (Potential).				epidermis development|melanin biosynthetic process from tyrosine	cytosol|integral to membrane|melanosome membrane|microsome	copper ion binding|dopachrome isomerase activity|oxidoreductase activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;3.71e-42)|all_epithelial(2;3.76e-31)|all_lung(2;5.16e-14)|Lung NSC(4;1.33e-13)|Breast(118;0.0013)|Hepatocellular(115;0.00886)|Renal(2;0.00988)		COAD - Colon adenocarcinoma(199;7.07e-05)|GBM - Glioblastoma multiforme(99;0.000472)		TCTGCCGAATCACTGGTGGTT	0.502			NA											74	91					2.77303e-49	5.19168e-49	0.01441	1	0
COL4A2	1284	broad.mit.edu	37	13	111090995	111090995	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:111090995A>T	uc001vqx.2	+	15	1181	c.892A>T	c.(892-894)ATG>TTG	p.M298L		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	298	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			AGAAGGAATCATGGGCTTTCC	0.463			NA											26	29					0	0	0.013726	0	0
MCF2L	23263	broad.mit.edu	37	13	113699673	113699673	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:113699673G>A	uc001vsu.2	+	4	560	c.538G>A	c.(538-540)GCA>ACA	p.A180T	MCF2L_uc001vsq.2_Missense_Mutation_p.A180T|MCF2L_uc010tjr.1_Missense_Mutation_p.A123T|MCF2L_uc001vsr.2_Missense_Mutation_p.A127T|MCF2L_uc001vss.3_Missense_Mutation_p.A121T|MCF2L_uc010tjs.1_Missense_Mutation_p.A121T|MCF2L_uc001vst.1_Missense_Mutation_p.A85T	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	153	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				CCTGCGCATCGCAGTAAGTGC	0.652			NA											12	7					0	0	0.00245	0	0
MCF2L	23263	broad.mit.edu	37	13	113714936	113714936	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:113714936C>T	uc001vsu.2	+	5	592	c.570C>T	c.(568-570)GTC>GTT	p.V190V	MCF2L_uc001vsq.2_Silent_p.V190V|MCF2L_uc010tjr.1_Silent_p.V133V|MCF2L_uc001vsr.2_Silent_p.V137V|MCF2L_uc001vss.3_Silent_p.V131V|MCF2L_uc010tjs.1_Silent_p.V131V|MCF2L_uc001vst.1_Silent_p.V95V	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	163	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				TGCAGCTCGTCCTCGTGCTTC	0.567			NA											15	19					0	0	0.008871	0	0
F7	2155	broad.mit.edu	37	13	113771857	113771857	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:113771857C>A	uc001vsv.2	+	8	803	c.752C>A	c.(751-753)GCG>GAG	p.A251E	F7_uc001vsw.2_Missense_Mutation_p.A229E|F7_uc010tjt.1_Missense_Mutation_p.A182E	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	251	Peptidase S1.		A -> P (in FA7D).|A -> T (in FA7D).		anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	GTGGTCTCCGCGGCCCACTGT	0.617			NA											37	59					1.90571e-15	3.06798e-15	0.004289	1	0
TEP1	7011	broad.mit.edu	37	14	20849833	20849833	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:20849833C>A	uc001vxe.2	-	31	4477	c.4437G>T	c.(4435-4437)GAG>GAT	p.E1479D	TEP1_uc010ahk.2_Missense_Mutation_p.E822D|TEP1_uc010tlf.1_Intron|TEP1_uc010tlg.1_Missense_Mutation_p.E1371D|TEP1_uc010tlh.1_Intron	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1479	NACHT.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		CCAGAGGGCCCTCCCCTAGCA	0.612			NA											11	28					0.000151284	0.00017315	0.001855	1	0
RNASE3	6037	broad.mit.edu	37	14	21360130	21360130	+	Silent	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:21360130C>G	uc001vyj.2	+	2	339	c.285C>G	c.(283-285)CTC>CTG	p.L95L		NM_002935	NP_002926	P12724	ECP_HUMAN	ribonuclease, RNase A family, 3 (eosinophil	95					defense response to bacterium|RNA catabolic process	extracellular region|soluble fraction	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00453)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)	Pranlukast(DB01411)	ACAGAACTCTCAACAATTGTC	0.413			NA											25	40					0	0	0.012213	0	0
TPPP2	122664	broad.mit.edu	37	14	21500233	21500233	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:21500233G>T	uc001vzh.2	+	4	698	c.510G>T	c.(508-510)AAG>AAT	p.K170N	NDRG2_uc010tll.1_Intron	NM_173846	NP_776245	P59282	TPPP2_HUMAN	tubulin polymerization-promoting protein family	170						cytoplasm					0	all_cancers(95;0.000759)		OV - Ovarian serous cystadenocarcinoma(11;6.85e-11)|Epithelial(56;9.49e-09)|all cancers(55;3.84e-08)	GBM - Glioblastoma multiforme(265;0.0191)		AGAAGACCAAGTAGAGAGGAG	0.517			NA											8	40					0.000274275	0.000309087	0.004482	1	0
LRP10	26020	broad.mit.edu	37	14	23345384	23345384	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:23345384G>C	uc001whd.2	+	5	1780	c.1227G>C	c.(1225-1227)GAG>GAC	p.E409D	LRP10_uc001whe.2_Missense_Mutation_p.E285D	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	409	LDL-receptor class A 4.|Extracellular (Potential).				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		GCCGGGACGAGAAGTGCGTGT	0.582			NA											3	164					0	0	0.000602	0	0
MYH7	4625	broad.mit.edu	37	14	23902898	23902898	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:23902898T>C	uc001wjx.2	-	3	150	c.44A>G	c.(43-45)TAC>TGC	p.Y15C		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	15	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CTTGCGCAGGTAGGGGGCGGC	0.572			NA											16	14					0	0	0.008871	0	0
THTPA	79178	broad.mit.edu	37	14	24026245	24026245	+	Silent	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:24026245T>C	uc001wkh.3	+	2	649	c.279T>C	c.(277-279)TGT>TGC	p.C93C	THTPA_uc001wkb.3_Intron|THTPA_uc001wkg.3_Silent_p.C93C|THTPA_uc010akr.2_Intron|THTPA_uc001wki.3_Silent_p.C93C	NM_001126339	NP_001119811	Q9BU02	THTPA_HUMAN	thiamine triphosphatase	93					dephosphorylation|generation of precursor metabolites and energy|thiamine metabolic process	cytosol|nucleolus|soluble fraction	thiamin-triphosphatase activity				0	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00643)	Thiamine(DB00152)	CCCAACTCTGTAAGGTGCTGC	0.582			NA											5	64					0	0	0.00308	0	0
LTB4R2	56413	broad.mit.edu	37	14	24780785	24780785	+	Silent	SNP	G	G	T	rs148919542		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:24780785G>T	uc001woq.1	+	1	2625	c.1008G>T	c.(1006-1008)ACG>ACT	p.T336T	CIDEB_uc001woo.2_5'Flank|CIDEB_uc001wop.2_5'Flank|LTB4R2_uc010alo.2_Silent_p.T305T|LTB4R2_uc001wor.2_Silent_p.T305T|LTB4R_uc001wos.2_5'UTR|LTB4R_uc010alp.2_5'Flank	NM_019839	NP_062813	Q9NPC1	LT4R2_HUMAN	leukotriene B4 receptor 2	336	Cytoplasmic (Potential).				chemotaxis|negative regulation of adenylate cyclase activity	integral to plasma membrane					0				GBM - Glioblastoma multiforme(265;0.018)		GTTTCCTCACGCGGCTCTTCG	0.647			NA											11	38					1.36491e-13	2.11039e-13	0.001855	1	0
SYNE2	23224	broad.mit.edu	37	14	64675528	64675528	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:64675528A>C	uc001xgm.2	+	101	18484	c.18254A>C	c.(18253-18255)AAC>ACC	p.N6085T	SYNE2_uc001xgl.2_Missense_Mutation_p.N6085T|SYNE2_uc010apy.2_Missense_Mutation_p.N2470T|SYNE2_uc001xgn.2_Missense_Mutation_p.N1047T|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_Missense_Mutation_p.N55T|SYNE2_uc001xgq.2_Missense_Mutation_p.N450T|SYNE2_uc001xgr.2_5'Flank	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	6085	Cytoplasmic (Potential).|Spectrin 6.				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TCCGTGTTTAACATCTGTGAC	0.527			NA											26	72					0	0	0.003755	0	0
DCAF5	8816	broad.mit.edu	37	14	69520831	69520831	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:69520831C>G	uc001xkp.2	-	9	2791	c.2572G>C	c.(2572-2574)GCC>CCC	p.A858P	DCAF5_uc001xkq.2_Missense_Mutation_p.A857P	NM_003861	NP_003852	Q96JK2	DCAF5_HUMAN	WD repeat domain 22	858						CUL4 RING ubiquitin ligase complex				ovary(1)|central_nervous_system(1)	2						GAAGAGTAGGCCACCACCTCC	0.557			NA											6	32					0	0	0.004482	0	0
SLC8A3	6547	broad.mit.edu	37	14	70635016	70635016	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:70635016C>T	uc001xly.2	-	2	878	c.124G>A	c.(124-126)GGG>AGG	p.G42R	SLC8A3_uc001xlw.2_Missense_Mutation_p.G42R|SLC8A3_uc001xlx.2_Missense_Mutation_p.G42R|SLC8A3_uc001xlz.2_Missense_Mutation_p.G42R|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	42	Extracellular (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TTGTTCTGCCCTGTGCTTGGC	0.562			NA											18	32					0	0	0.008871	0	0
NRXN3	9369	broad.mit.edu	37	14	79175973	79175973	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:79175973G>A	uc001xun.2	+	4	1007	c.516G>A	c.(514-516)GTG>GTA	p.V172V	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Silent_p.V306V	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	545	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GGTACCATGTGGACATTCAGC	0.478			NA											23	70					0	0	0.005443	0	0
STON2	85439	broad.mit.edu	37	14	81744475	81744475	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:81744475C>A	uc010tvu.1	-	4	1381	c.1180G>T	c.(1180-1182)GAT>TAT	p.D394Y	STON2_uc001xvk.1_Missense_Mutation_p.D394Y|STON2_uc010tvt.1_Missense_Mutation_p.D191Y	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	394					endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		CCAAAGTGATCAGGGTCATCA	0.488			NA											9	36					0.000442599	0.000493086	0.006214	1	0
FLRT2	23768	broad.mit.edu	37	14	86089745	86089745	+	Silent	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:86089745C>G	uc001xvr.2	+	2	2654	c.1887C>G	c.(1885-1887)ACC>ACG	p.T629T	FLRT2_uc010atd.2_Silent_p.T629T	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	629	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		CCATTTACACCCCAAATGGGG	0.478			NA											62	220					0	0	0.01441	0	0
TTC8	123016	broad.mit.edu	37	14	89337909	89337909	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:89337909G>T	uc010ath.2	+	12	1248	c.1114G>T	c.(1114-1116)GGC>TGC	p.G372C	TTC8_uc001xxl.2_Missense_Mutation_p.G117C|TTC8_uc010ati.2_Missense_Mutation_p.G158C|TTC8_uc001xxm.2_Missense_Mutation_p.G316C|TTC8_uc010atj.2_Missense_Mutation_p.G91C|TTC8_uc001xxi.2_Missense_Mutation_p.G356C|TTC8_uc001xxj.2_Missense_Mutation_p.G346C|TTC8_uc001xxk.2_Missense_Mutation_p.G316C	NM_198309	NP_938051	Q8TAM2	TTC8_HUMAN	tetratricopeptide repeat domain 8 isoform B	382	TPR 5.				cilium assembly|establishment of anatomical structure orientation|sensory processing	BBSome|centrosome|cilium membrane|microtubule basal body	protein binding				0						GCTGCAGATGGGCATTTATAA	0.383			NA							Bardet-Biedl_syndrome				4	26					8.12818e-05	9.35779e-05	0.001984	1	0
IFI27L1	122509	broad.mit.edu	37	14	94563303	94563303	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:94563303G>T	uc001ycl.2	+	2	228	c.20G>T	c.(19-21)TGG>TTG	p.W7L	IFI27L1_uc001yck.2_Missense_Mutation_p.W7L	NM_206949	NP_996832	Q96BM0	I27L1_HUMAN	interferon, alpha-inducible protein 27-like 1	7						integral to membrane					0						GAGAGTGGATGGGACTCAGGT	0.507			NA											4	19					3.59834e-05	4.20883e-05	0.001168	1	0
SERPINA6	866	broad.mit.edu	37	14	94770882	94770882	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr14:94770882G>T	uc001ycv.2	-	5	1195	c.1091C>A	c.(1090-1092)ACT>AAT	p.T364N	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	364					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	GGTGACCCCAGTGGAGCCAGC	0.517			NA											14	23					1.62849e-17	2.70339e-17	0.004007	1	0
SCG5	6447	broad.mit.edu	37	15	32976839	32976839	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr15:32976839C>A	uc001zha.2	+	4	575	c.458C>A	c.(457-459)CCG>CAG	p.P153Q	SCG5_uc001zgz.2_Missense_Mutation_p.P152Q	NM_001144757	NP_001138229	P05408	7B2_HUMAN	secretogranin V isoform 1	153					intracellular protein transport|neuropeptide signaling pathway|peptide hormone processing|regulation of hormone secretion	extracellular region|stored secretory granule	enzyme inhibitor activity|GTP binding|unfolded protein binding				0		all_lung(180;7.32e-08)		all cancers(64;6.48e-17)|Epithelial(43;1.23e-11)|GBM - Glioblastoma multiforme(186;1.39e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0212)		CTCTTTGATCCGGAACATGAC	0.473			NA											6	13					1.06961e-07	1.39287e-07	0.00308	1	0
TLN2	83660	broad.mit.edu	37	15	62939619	62939619	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr15:62939619G>T	uc002alb.3	+	1	110	c.110G>T	c.(109-111)CGG>CTG	p.R37L	MGC15885_uc010uib.1_5'Flank|MGC15885_uc002ala.3_5'Flank	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	37					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						ATTCGGGAACGGGTGCCTGAG	0.468			NA											36	83					4.21674e-32	7.67394e-32	0.01441	1	0
HERC1	8925	broad.mit.edu	37	15	64027005	64027005	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr15:64027005G>T	uc002amp.2	-	13	2712	c.2564C>A	c.(2563-2565)CCT>CAT	p.P855H	HERC1_uc010uil.1_Intron	NM_003922	NP_003913	Q15751	HERC1_HUMAN	hect domain and RCC1-like domain 1	855					protein modification process|transport	cytosol|Golgi apparatus|membrane	acid-amino acid ligase activity|ARF guanyl-nucleotide exchange factor activity			ovary(6)|breast(6)|lung(5)|central_nervous_system(2)	19						TCGTAATGGAGGTAACAGCAT	0.383			NA											3	13					1.024e-07	1.33943e-07	0.000602	1	0
IGDCC3	9543	broad.mit.edu	37	15	65621255	65621255	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr15:65621255C>A	uc002aos.2	-	14	2689	c.2437G>T	c.(2437-2439)GAA>TAA	p.E813*	IGDCC3_uc002aor.1_Nonsense_Mutation_p.E99*	NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	813	Cytoplasmic (Potential).									ovary(3)	3						GGCTACTGTTCCGAGTGAGCT	0.632			NA											14	28					0.000566183	0.000628378	0.00499	1	0
UACA	55075	broad.mit.edu	37	15	70980144	70980144	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr15:70980144G>A	uc002asr.2	-	6	544	c.440C>T	c.(439-441)CCT>CTT	p.P147L	UACA_uc010uke.1_Missense_Mutation_p.P147L|UACA_uc002asq.2_Missense_Mutation_p.P134L|UACA_uc010bin.1_Missense_Mutation_p.P133L	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	147	ANK 4.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						TATGCTAGAAGGACAATCTGC	0.363			NA											11	20					0	0	0.008291	0	0
SYNM	23336	broad.mit.edu	37	15	99669911	99669911	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr15:99669911C>A	uc002bup.2	+	6	1466	c.1346C>A	c.(1345-1347)CCA>CAA	p.P449Q	SYNM_uc002buo.2_Missense_Mutation_p.P449Q|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	449	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						CCTGACAGACCAAAAGCCGGA	0.507	Pancreas(125;1071 1762 21750 40003 40381)		NA											6	19					2.7689e-08	3.73865e-08	0.001984	1	0
LINS1	55180	broad.mit.edu	37	15	101114206	101114206	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr15:101114206A>G	uc002bwe.2	-	6	1163	c.872T>C	c.(871-873)ATT>ACT	p.I291T	LINS1_uc002bwd.2_5'Flank|LINS1_uc002bwf.2_Missense_Mutation_p.I291T|LINS1_uc002bwg.2_Missense_Mutation_p.I291T|LINS1_uc002bwh.2_Missense_Mutation_p.I291T|LINS1_uc010usa.1_Missense_Mutation_p.I172T|LINS1_uc002bwi.2_Missense_Mutation_p.I291T	NM_001040614	NP_001035704	Q8NG48	LINES_HUMAN	lines homolog 1	291											0	Lung NSC(78;0.0018)|all_lung(78;0.00223)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.00095)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)			AAAAGCCTGAATAGGCCAGGT	0.423			NA											16	17					0	0	0.004007	0	0
AMDHD2	51005	broad.mit.edu	37	16	2571043	2571043	+	Silent	SNP	C	C	T	rs150383216		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:2571043C>T	uc002cqq.2	+	3	376	c.279C>T	c.(277-279)CTC>CTT	p.L93L	AMDHD2_uc002cqp.2_Silent_p.L93L|AMDHD2_uc010uwc.1_Silent_p.L93L|AMDHD2_uc010uwd.1_5'UTR	NM_015944	NP_057028	Q9Y303	NAGA_HUMAN	amidohydrolase domain containing 2 isoform 1	93					N-acetylglucosamine metabolic process		N-acetylglucosamine-6-phosphate deacetylase activity			skin(2)|large_intestine(1)|breast(1)	4						GGGTTGCCCTCGTGGCCCGGA	0.612			NA											23	70					0	0	0.003954	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858086	9858086	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:9858086G>T	uc002czo.3	-	13	3863	c.3315C>A	c.(3313-3315)TAC>TAA	p.Y1105*	GRIN2A_uc010uym.1_Nonsense_Mutation_p.Y1105*|GRIN2A_uc010uyn.1_Nonsense_Mutation_p.Y948*|GRIN2A_uc002czr.3_Nonsense_Mutation_p.Y1105*	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1105	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TGGTTTTCAGGTAGGTGCGCT	0.468			NA											24	90					7.68411e-24	1.35222e-23	0.008361	1	0
Unknown	0	broad.mit.edu	37	16	21848679	21848679	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:21848679G>T	uc002djr.3	-	9	1211	c.1029C>A	c.(1027-1029)CCC>CCA	p.P343P	uc002djs.3_RNA|uc010vbm.1_5'Flank|uc002djn.3_RNA|uc002djq.3_Silent_p.P324P|uc010vbn.1_Silent_p.P343P	NM_130464	NP_569731			nuclear pore complex interacting protein-like 3												NA						GCAGACACTCGGGAGGTGTCT	0.458			NA											60	76					1.15062e-32	2.11367e-32	0.01441	1	0
Unknown	0	broad.mit.edu	37	16	21848767	21848767	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:21848767G>A	uc002djr.3	-	9	1123	c.941C>T	c.(940-942)CCC>CTC	p.P314L	uc002djs.3_RNA|uc010vbm.1_5'Flank|uc002djn.3_RNA|uc002djq.3_Missense_Mutation_p.P295L|uc010vbn.1_Missense_Mutation_p.P314L	NM_130464	NP_569731			nuclear pore complex interacting protein-like 3												NA						ATCCGCTGAGGGTGGAAGGGG	0.552			NA											15	75					0	0	0.00333	0	0
CDR2	1039	broad.mit.edu	37	16	22359093	22359093	+	Silent	SNP	A	A	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:22359093A>C	uc002dkn.2	-	5	866	c.558T>G	c.(556-558)GGT>GGG	p.G186G		NM_001802	NP_001793	Q01850	CDR2_HUMAN	cerebellar degeneration-related protein 2	186						nucleus	protein binding			skin(1)	1				GBM - Glioblastoma multiforme(48;0.0188)		GGCTTGGCTGACCTTGCAAGG	0.448			NA											18	60					0	0	0.008871	0	0
GSG1L	146395	broad.mit.edu	37	16	27818870	27818870	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:27818870T>A	uc002doz.2	-	6	921	c.836A>T	c.(835-837)GAG>GTG	p.E279V	GSG1L_uc010bya.1_Missense_Mutation_p.E228V|GSG1L_uc010bxz.1_Missense_Mutation_p.E142V|GSG1L_uc002doy.2_Missense_Mutation_p.E124V	NM_001109763	NP_001103233	Q6UXU4	GSG1L_HUMAN	GSG1-like isoform 1	279						integral to membrane				ovary(1)	1						GTCCCTCTTCTCCATCCTGGA	0.488			NA											16	22					0	0	0.008871	0	0
PRSS36	146547	broad.mit.edu	37	16	31154757	31154757	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:31154757A>C	uc002ebd.2	-	8	1065	c.1006T>G	c.(1006-1008)TGG>GGG	p.W336G	PRSS36_uc010vff.1_Missense_Mutation_p.W111G|PRSS36_uc010vfg.1_Missense_Mutation_p.W336G|PRSS36_uc010vfh.1_Missense_Mutation_p.W336G	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	336	Peptidase S1 2.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						TGGGCCTCCCAGGGCCAGGCC	0.662			NA											14	11					0	0	0.003163	0	0
ITGAX	3687	broad.mit.edu	37	16	31384596	31384596	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:31384596A>T	uc002ebu.1	+	20	2460	c.2393A>T	c.(2392-2394)AAC>ATC	p.N798I	ITGAX_uc002ebt.2_Missense_Mutation_p.N798I	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	798	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GTGGGGAGTAACCTGGAGCTG	0.537			NA											23	70					0	0	0.005443	0	0
Unknown	0	broad.mit.edu	37	16	33784717	33784717	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:33784717C>A	uc010vgb.1	+	2	126	c.106C>A	c.(106-108)CCG>ACG	p.P36T						RecName: Full=Transporter;												NA						CAACGTGTACCCGTGGTGGGG	0.572			NA											6	64					5.18039e-06	6.29815e-06	0.00308	1	0
ZNF423	23090	broad.mit.edu	37	16	49670254	49670254	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:49670254G>T	uc002efs.2	-	5	3107	c.2809C>A	c.(2809-2811)CGG>AGG	p.R937R	ZNF423_uc010vgn.1_Silent_p.R820R	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	937	C2H2-type 22.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				AAGAAAGTCCGTGAACAAACG	0.592			NA											21	16					3.01185e-09	4.26315e-09	0.003954	1	0
SLC6A2	6530	broad.mit.edu	37	16	55725860	55725860	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:55725860T>A	uc002eif.2	+	6	925	c.814T>A	c.(814-816)TTC>ATC	p.F272I	SLC6A2_uc010ccd.2_Missense_Mutation_p.F272I|SLC6A2_uc002eig.2_Missense_Mutation_p.F272I|SLC6A2_uc002eih.2_Missense_Mutation_p.F272I|SLC6A2_uc002eii.2_Missense_Mutation_p.F167I|SLC6A2_uc002eij.2_Intron	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	272	Helical; Name=5; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	GCTGCCTTACTTCGTGCTGTT	0.607			NA											19	13					0	0	0.008871	0	0
MT1M	4499	broad.mit.edu	37	16	56667691	56667691	+	Nonsense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:56667691T>A	uc002ejn.2	+	3	233	c.123T>A	c.(121-123)TGT>TGA	p.C41*	MT1A_uc002eji.2_Intron|MT1M_uc010vhe.1_RNA|uc002ejo.1_5'Flank|uc002ejp.1_5'Flank	NM_176870	NP_789846	Q8N339	MT1M_HUMAN	metallothionein 1M	41	Alpha.	Divalent metal cation; cluster A.					metal ion binding			ovary(1)	1						CCGTGGGCTGTGCCAAGTGTG	0.597			NA											70	57					0	0	0.01441	0	0
TRADD	8717	broad.mit.edu	37	16	67188856	67188856	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:67188856C>G	uc002eri.1	-	5	715	c.635G>C	c.(634-636)CGG>CCG	p.R212P	TRADD_uc002erh.1_Missense_Mutation_p.R152P	NM_003789	NP_003780	Q15628	TRADD_HUMAN	TNFRSF1A-associated via death domain	212	Death.				activation of caspase activity|activation of pro-apoptotic gene products|induction of apoptosis by extracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|tumor necrosis factor-mediated signaling pathway	cytoskeleton|cytosol|receptor complex	binding, bridging|death domain binding|identical protein binding|kinase binding|signal transducer activity			lung(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.0335)|all cancers(182;0.184)		GCTCAGCGGCCGATTCACTGC	0.706			NA											6	18					0	0	0.00308	0	0
CTCF	10664	broad.mit.edu	37	16	67644874	67644874	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:67644874G>T	uc002etl.2	+	3	429	c.139G>T	c.(139-141)GGG>TGG	p.G47W	CTCF_uc010cek.2_Intron	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	47					chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		CCAGACGGATGGGGGTGAGGT	0.522	Colon(175;1200 1966 6945 23069 27405)		NA											19	41					6.33239e-15	1.00836e-14	0.010504	1	0
CDH3	1001	broad.mit.edu	37	16	68713715	68713715	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:68713715G>T	uc002ewf.2	+	7	1837	c.705G>T	c.(703-705)ATG>ATT	p.M235I	CDH3_uc010vli.1_Missense_Mutation_p.M180I	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	235	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		CTTCTGTGATGCAGGTGACAG	0.463			NA											14	38					3.32936e-07	4.25055e-07	0.006122	1	0
NFAT5	10725	broad.mit.edu	37	16	69725937	69725937	+	Nonsense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:69725937A>T	uc002exm.1	+	12	3363	c.2155A>T	c.(2155-2157)AGA>TGA	p.R719*	NFAT5_uc002exi.2_Nonsense_Mutation_p.R643*|NFAT5_uc002exj.1_Nonsense_Mutation_p.R643*|NFAT5_uc002exk.1_Nonsense_Mutation_p.R643*|NFAT5_uc002exl.1_Nonsense_Mutation_p.R737*|NFAT5_uc002exn.1_Nonsense_Mutation_p.R736*|NFAT5_uc002exo.1_5'Flank	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	719					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						AACTCAGTCTAGAGAGATATT	0.463			NA											25	45					0	0	0.007291	0	0
FUK	197258	broad.mit.edu	37	16	70513219	70513219	+	Silent	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:70513219T>C	uc002eyy.2	+	23	3124	c.3066T>C	c.(3064-3066)GCT>GCC	p.A1022A	FUK_uc010cft.2_Silent_p.A1028A|FUK_uc002eyz.2_Silent_p.A513A	NM_145059	NP_659496	Q8N0W3	FUK_HUMAN	fucokinase	1022						cytoplasm	ATP binding|fucokinase activity			ovary(1)	1		Ovarian(137;0.0694)				AGAGCCTGGCTGGGGCAGGCG	0.627			NA											16	25					0	0	0.010504	0	0
C16orf46	123775	broad.mit.edu	37	16	81095100	81095100	+	Missense_Mutation	SNP	G	G	A	rs139506410	byFrequency	TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:81095100G>A	uc002fgc.3	-	4	1113	c.854C>T	c.(853-855)GCG>GTG	p.A285V	C16orf46_uc010chf.2_Missense_Mutation_p.A285V|C16orf46_uc010vno.1_Missense_Mutation_p.A12V	NM_152337	NP_689550	Q6P387	CP046_HUMAN	chromosome 16 open reading frame 46 isoform 2	285											0						TATCTGGGCCGCTGGGGAAGG	0.577			NA											2	115					0	0	0.004672	0	0
SDR42E1	93517	broad.mit.edu	37	16	82033819	82033819	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:82033819C>A	uc002fgu.2	-	3	207	c.79G>T	c.(79-81)GCC>TCC	p.A27S		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	27					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						TGGTTCAGGGCACAGCCCAGG	0.443			NA											40	33					1.03325e-14	1.63644e-14	0.011902	1	0
JPH3	57338	broad.mit.edu	37	16	87678146	87678146	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr16:87678146G>T	uc002fkd.2	+	2	919	c.665G>T	c.(664-666)GGG>GTG	p.G222V	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	222	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		CTGCTGAGTGGGCTGAAGCTG	0.657			NA											8	12					0.00400662	0.00431596	0.004007	1	0
ANKFY1	51479	broad.mit.edu	37	17	4074090	4074090	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:4074090G>A	uc002fxq.1	-	23	3243	c.3205C>T	c.(3205-3207)CGC>TGC	p.R1069C	ANKFY1_uc002fxn.2_Missense_Mutation_p.R1111C|ANKFY1_uc002fxo.2_Missense_Mutation_p.R1070C|ANKFY1_uc002fxp.2_Missense_Mutation_p.R1068C|ANKFY1_uc010ckp.2_Missense_Mutation_p.R1011C	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	1069	ANK 21.					endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						ACCCCGAGGCGAGCCCCCGAC	0.597			NA											11	35					0	0	0.013537	0	0
PITPNM3	83394	broad.mit.edu	37	17	6381910	6381910	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:6381910C>A	uc002gdd.3	-	7	885	c.734G>T	c.(733-735)AGA>ATA	p.R245I	PITPNM3_uc010cln.2_Missense_Mutation_p.R209I|PITPNM3_uc002gdc.3_5'UTR	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	245					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		CAGGAACTCTCTGTAGACCTG	0.647			NA											3	17					0.00909568	0.00967345	0.009096	1	0
PHF23	79142	broad.mit.edu	37	17	7139797	7139797	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:7139797G>C	uc002gfa.2	-	4	676	c.449C>G	c.(448-450)TCC>TGC	p.S150C	DVL2_uc002gez.1_5'Flank|DVL2_uc010vtr.1_5'Flank|DVL2_uc010clz.1_5'Flank|PHF23_uc010vtt.1_Missense_Mutation_p.S83C|PHF23_uc010cma.2_Missense_Mutation_p.S20C	NM_024297	NP_077273	Q9BUL5	PHF23_HUMAN	PHD finger protein 23	150							zinc ion binding				0						GGATGTGGGGGACAAAGGAGA	0.592			NA											8	27					0	0	0.004482	0	0
DNAH2	146754	broad.mit.edu	37	17	7646377	7646377	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:7646377C>A	uc002giu.1	+	11	1835	c.1821C>A	c.(1819-1821)GAC>GAA	p.D607E	DNAH2_uc002git.2_Missense_Mutation_p.D689E|DNAH2_uc010vuk.1_Missense_Mutation_p.D607E	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	607	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CAAGTCTGGACAAGGATTGCA	0.527			NA											14	49					9.16793e-09	1.27308e-08	0.00499	1	0
DNAH2	146754	broad.mit.edu	37	17	7720969	7720969	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:7720969G>T	uc002giu.1	+	65	10125	c.10111G>T	c.(10111-10113)GGG>TGG	p.G3371W	DNAH2_uc010cnm.1_Missense_Mutation_p.G309W	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3371	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GAACATCCAAGGGTTGCCCTC	0.592			NA											13	34					6.72482e-11	9.85187e-11	0.003163	1	0
MYH8	4626	broad.mit.edu	37	17	10302880	10302880	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:10302880G>T	uc002gmm.2	-	28	3937	c.3842C>A	c.(3841-3843)GCG>GAG	p.A1281E	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1281	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						CTGCAGGCGCGCTCTCTGTGC	0.473			NA							Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				15	41					8.00594e-06	9.69314e-06	0.007413	1	0
MYH4	4622	broad.mit.edu	37	17	10351287	10351287	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:10351287G>T	uc002gmn.2	-	34	4924	c.4813C>A	c.(4813-4815)CTG>ATG	p.L1605M	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1605	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCAGCATCCAGTGTACTCTGC	0.438			NA											32	87					8.69298e-16	1.40721e-15	0.006999	1	0
MYH2	4620	broad.mit.edu	37	17	10427825	10427825	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:10427825C>G	uc010coi.2	-	35	5261	c.5133G>C	c.(5131-5133)GAG>GAC	p.E1711D	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1711D|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1711	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CATCCAGGAGCTCCTGTTCTG	0.522			NA											7	72					0	0	0.004482	0	0
TEKT3	64518	broad.mit.edu	37	17	15234527	15234527	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:15234527G>C	uc002gon.2	-	3	563	c.376C>G	c.(376-378)CGC>GGC	p.R126G		NM_031898	NP_114104	Q9BXF9	TEKT3_HUMAN	tektin 3	126					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0877)		TGAATCAGGCGAGATGTATCC	0.413			NA											23	68					0	0	0.012319	0	0
SUPT6H	6830	broad.mit.edu	37	17	27002069	27002069	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:27002069G>T	uc002hby.2	+	5	517	c.427G>T	c.(427-429)GAA>TAA	p.E143*	SUPT6H_uc010crt.2_Nonsense_Mutation_p.E143*	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	143	Asp/Glu-rich.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					ACATGAAAAAGAAGCTATTGC	0.522			NA											4	29					3.59834e-05	4.20883e-05	0.001168	1	0
RARA	5914	broad.mit.edu	37	17	38487528	38487528	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:38487528C>T	uc002huk.1	+	2	513	c.58C>T	c.(58-60)CCG>TCG	p.P20S	RARA_uc002hul.3_Missense_Mutation_p.P20S|RARA_uc010wfe.1_Missense_Mutation_p.P20S	NM_000964	NP_000955	P10276	RARA_HUMAN	retinoic acid receptor, alpha isoform 1	20	Modulating.				apoptotic cell clearance|cellular response to estrogen stimulus|cellular response to retinoic acid|estrogen receptor signaling pathway|negative regulation of granulocyte differentiation|negative regulation of interferon-gamma production|negative regulation of tumor necrosis factor production|positive regulation of binding|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of interleukin-13 production|positive regulation of interleukin-4 production|positive regulation of interleukin-5 production|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription from RNA polymerase II promoter|protein phosphorylation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to estradiol stimulus	cytoplasm|nucleoplasm	chromatin DNA binding|enzyme binding|protein domain specific binding|protein heterodimerization activity|receptor binding|retinoic acid binding|retinoic acid receptor activity|retinoic acid-responsive element binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		Breast(137;0.00328)	STAD - Stomach adenocarcinoma(5;0.00143)		Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Isotretinoin(DB00982)|Tamibarotene(DB04942)|Tazarotene(DB00799)	CAATGGGTACCCGGTGCCTCC	0.642			NA	T	PML|ZNF145|TIF1|NUMA1|NPM1	APL								38	22					0	0	0.00874	0	0
FKBP10	60681	broad.mit.edu	37	17	39978051	39978051	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:39978051C>A	uc002hxv.2	+	9	1870	c.1545C>A	c.(1543-1545)GGC>GGA	p.G515G	FKBP10_uc002hxw.1_Silent_p.G279G	NM_021939	NP_068758	Q96AY3	FKB10_HUMAN	FK506 binding protein 10 precursor	515	1 (Potential).|EF-hand 1.				protein folding	endoplasmic reticulum lumen|membrane	calcium ion binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Breast(137;0.00122)		BRCA - Breast invasive adenocarcinoma(366;0.148)		ACAAGGATGGCGAGGTCCCTC	0.602			NA											17	58					1.67942e-08	2.31018e-08	0.006122	1	0
ARL4D	379	broad.mit.edu	37	17	41477375	41477375	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:41477375G>T	uc002idt.2	+	2	456	c.275G>T	c.(274-276)CGC>CTC	p.R92L		NM_001661	NP_001652	P49703	ARL4D_HUMAN	ADP-ribosylation factor-like 4D	92					protein secretion|small GTPase mediated signal transduction	cytoplasm|nucleolus|plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)	1		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.155)		TCTTATACCCGCCGGACAGAC	0.647			NA											20	34					5.35356e-11	7.88237e-11	0.00278	1	0
MPO	4353	broad.mit.edu	37	17	56349090	56349090	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:56349090C>A	uc002ivu.1	-	11	2133	c.1956G>T	c.(1954-1956)AAG>AAT	p.K652N		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	652					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	GGCCTTTGCGCTTCAGAGGCT	0.627			NA											15	12					6.94344e-10	9.97269e-10	0.006122	1	0
BRIP1	83990	broad.mit.edu	37	17	59763348	59763348	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:59763348G>A	uc002izk.1	-	19	2895	c.2754C>T	c.(2752-2754)ACC>ACT	p.T918T	BRIP1_uc002izl.1_Silent_p.T299T	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	918	Interaction with BRCA1.				DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						AATAAGGTGAGGTACTGTACT	0.363			NA	F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	FanconAnemia				21	82					0	0	0.00333	0	0
KPNA2	3838	broad.mit.edu	37	17	66038394	66038394	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:66038394G>T	uc002jgk.2	+	5	628	c.496G>T	c.(496-498)GCA>TCA	p.A166S	KPNA2_uc002jgl.2_Missense_Mutation_p.A166S	NM_002266	NP_002257	P52292	IMA2_HUMAN	karyopherin alpha 2	166	NLS binding site (major) (By similarity).|ARM 3.				DNA metabolic process|G2 phase of mitotic cell cycle|interspecies interaction between organisms|M phase specific microtubule process|NLS-bearing substrate import into nucleus|regulation of DNA recombination	cytoplasm|nuclear pore|nucleoplasm	histone deacetylase binding|nuclear localization sequence binding|protein transporter activity			central_nervous_system(2)	2	all_cancers(12;1.18e-09)		BRCA - Breast invasive adenocarcinoma(8;1.03e-07)|LUSC - Lung squamous cell carcinoma(166;0.24)			TGCCATCCCAGCATTCATTTC	0.468			NA											67	296					1.71382e-40	3.18825e-40	0.01441	1	0
ABCA10	10349	broad.mit.edu	37	17	67148534	67148534	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:67148534G>A	uc010dfa.1	-	36	5104	c.4225C>T	c.(4225-4227)CGT>TGT	p.R1409C	ABCA10_uc002jhz.2_5'Flank|ABCA10_uc010wqs.1_Missense_Mutation_p.R401C|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1409	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					ATGGCCATACGGTCACACACA	0.493			NA											4	44					0	0	0.009096	0	0
KIF19	124602	broad.mit.edu	37	17	72346895	72346895	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:72346895C>G	uc002jkm.3	+	12	1576	c.1438C>G	c.(1438-1440)CGA>GGA	p.R480G	KIF19_uc002jkj.2_Missense_Mutation_p.R480G|KIF19_uc002jkk.2_Missense_Mutation_p.R438G|KIF19_uc002jkl.2_Missense_Mutation_p.R438G	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	480					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						GGAGGAGCAGCGAAAGGAGTG	0.647			NA											13	55					0	0	0.00245	0	0
LLGL2	3993	broad.mit.edu	37	17	73566089	73566089	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:73566089G>T	uc002joh.2	+	15	1781	c.1627G>T	c.(1627-1629)GAG>TAG	p.E543*	LLGL2_uc002joi.2_Nonsense_Mutation_p.E543*|LLGL2_uc010dgg.1_Nonsense_Mutation_p.E543*|LLGL2_uc002joj.2_Nonsense_Mutation_p.E532*|LLGL2_uc010wsd.1_Nonsense_Mutation_p.E170*	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	543	WD 9.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			GCAGGCTGTGGAGCAGGTGGA	0.687			NA											26	25					3.90053e-15	6.24511e-15	0.012213	1	0
QRICH2	84074	broad.mit.edu	37	17	74289852	74289852	+	Missense_Mutation	SNP	C	C	T	rs138229886		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:74289852C>T	uc002jrd.1	-	4	638	c.458G>A	c.(457-459)CGT>CAT	p.R153H	QRICH2_uc010wsz.1_Missense_Mutation_p.R79H|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	153							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						AGCTTCATCACGGGCCCTCGG	0.542			NA											4	48					0	0	0.009096	0	0
ST6GALNAC2	10610	broad.mit.edu	37	17	74569353	74569353	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:74569353C>A	uc002jsg.3	-	4	709	c.454G>T	c.(454-456)GCC>TCC	p.A152S		NM_006456	NP_006447	Q9UJ37	SIA7B_HUMAN	sialyltransferase 7B	152	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity				0						CCCACCACGGCACACCGGATA	0.602			NA											16	10					1.67942e-08	2.31018e-08	0.006122	1	0
JMJD6	23210	broad.mit.edu	37	17	74720008	74720008	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:74720008G>A	uc002jso.2	-	3	975	c.651C>T	c.(649-651)CTC>CTT	p.L217L	JMJD6_uc002jsn.1_Silent_p.L217L|JMJD6_uc010dgz.2_Silent_p.L217L|C17orf95_uc002jsp.2_5'Flank|C17orf95_uc002jsq.2_5'Flank|C17orf95_uc002jsr.2_5'Flank|C17orf95_uc002jss.2_5'Flank|C17orf95_uc002jst.2_5'Flank	NM_015167	NP_055982	Q6NYC1	JMJD6_HUMAN	jumonji domain containing 6 isoform 2	217	JmjC.				mRNA processing|peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine|regulation of nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|sprouting angiogenesis|transcription, DNA-dependent	nucleolus|nucleoplasm	histone demethylase activity (H3-R2 specific)|histone demethylase activity (H4-R3 specific)|identical protein binding|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptidyl-lysine 5-dioxygenase activity|single-stranded RNA binding			skin(2)|ovary(1)	3						TCACTTTGATGAGTTCCCTGG	0.542			NA											46	36					0	0	0.01441	0	0
CYTH1	9267	broad.mit.edu	37	17	76695001	76695001	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:76695001C>A	uc002jvw.2	-	8	671	c.600G>T	c.(598-600)CTG>CTT	p.L200L	CYTH1_uc010wtw.1_Silent_p.L141L|CYTH1_uc010wtx.1_Silent_p.L141L	NM_017456	NP_059430	Q15438	CYH1_HUMAN	cytohesin 1 isoform 2	200	SEC7.				regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						TGGGGTTGTGCAGACTGGTGT	0.512			NA											40	240					4.1673e-28	7.49092e-28	0.01441	1	0
CCDC40	55036	broad.mit.edu	37	17	78063594	78063594	+	Nonsense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr17:78063594C>T	uc010dht.2	+	17	2770	c.2743C>T	c.(2743-2745)CAA>TAA	p.Q915*	CCDC40_uc002jxm.3_Nonsense_Mutation_p.Q698*|CCDC40_uc002jxn.3_Nonsense_Mutation_p.Q311*	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	915	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			GAAAAAAATCCAACTGGCAAA	0.502			NA											14	53					0	0	0.004007	0	0
USP14	9097	broad.mit.edu	37	18	180238	180238	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:180238G>A	uc002kkf.1	+	5	519	c.303G>A	c.(301-303)ATG>ATA	p.M101I	USP14_uc002kkg.1_Missense_Mutation_p.M66I|USP14_uc010wyr.1_Missense_Mutation_p.M90I	NM_005151	NP_005142	P54578	UBP14_HUMAN	ubiquitin specific protease 14 isoform a	101					regulation of chemotaxis|regulation of proteasomal protein catabolic process|ubiquitin-dependent protein catabolic process	cell surface|cytoplasmic membrane-bounded vesicle|plasma membrane|proteasome complex	cysteine-type endopeptidase activity|endopeptidase inhibitor activity|proteasome binding|tRNA guanylyltransferase activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)	2		all_cancers(4;0.0896)|Myeloproliferative disorder(11;0.0412)				CCAACTAGATGGAGTTACCAT	0.313			NA											33	15					0	0	0.003755	0	0
EMILIN2	84034	broad.mit.edu	37	18	2890886	2890886	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:2890886C>A	uc002kln.2	+	4	920	c.761C>A	c.(760-762)ACT>AAT	p.T254N		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	254	Potential.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		GTCTTCAACACTAAGGAATCT	0.498			NA											29	21					1.06801e-11	1.61303e-11	0.009535	1	0
AFG3L2	10939	broad.mit.edu	37	18	12358888	12358888	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:12358888G>A	uc002kqz.1	-	8	920	c.807C>T	c.(805-807)TAC>TAT	p.Y269Y		NM_006796	NP_006787	Q9Y4W6	AFG32_HUMAN	AFG3 ATPase family gene 3-like 2	269	Helical; (Potential).				cell death|protein catabolic process|proteolysis	integral to membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0					Adenosine triphosphate(DB00171)	TTCTGATGGTGTAGAGCAAGA	0.572			NA											6	20					0	0	0.001168	0	0
NPC1	4864	broad.mit.edu	37	18	21113343	21113343	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:21113343G>T	uc002kum.3	-	24	4004	c.3730C>A	c.(3730-3732)CTC>ATC	p.L1244I	NPC1_uc010dlu.1_RNA|NPC1_uc010xaz.1_Missense_Mutation_p.L977I	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	1244	Helical; (Potential).				autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AAGACAGGGAGAAATATTAAT	0.403			NA											3	48					0.004672	0.00501427	0.004672	1	0
CDH2	1000	broad.mit.edu	37	18	25543382	25543383	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:25543382_25543383GG>TT	uc002kwg.2	-	15	2911_2912	c.2452_2453CC>AA	c.(2452-2454)CCC>AAC	p.P818N	CDH2_uc010xbn.1_Missense_Mutation_p.P787N	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	818	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						CGGATACTGGGGCTCGGCGTGG	0.53			NA											8	11					0	0	0.004672	0	0
C18orf34	374864	broad.mit.edu	37	18	30992018	30992018	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:30992018G>A	uc002kxn.2	-	2	177	c.35C>T	c.(34-36)ACT>ATT	p.T12I	C18orf34_uc010xbr.1_Missense_Mutation_p.T12I|C18orf34_uc010dmf.1_Missense_Mutation_p.T12I|C18orf34_uc002kxo.2_Missense_Mutation_p.T12I|C18orf34_uc002kxp.2_Missense_Mutation_p.T12I	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	12										ovary(1)	1						ATCATCTCTAGTGGAAGAAGA	0.249			NA											3	17					0	0	0.009096	0	0
RIT2	6014	broad.mit.edu	37	18	40695453	40695454	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:40695453_40695454GG>TT	uc002lav.2	-	1	204_205	c.31_32CC>AA	c.(31-33)CCG>AAG	p.P11K	RIT2_uc010dnf.2_Missense_Mutation_p.P11K	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	11					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						TGCGCTGCCCGGGGAGCAGCTG	0.53			NA											23	36					0	0	0.004672	0	0
SETBP1	26040	broad.mit.edu	37	18	42530157	42530157	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:42530157G>T	uc010dni.2	+	4	1148	c.852G>T	c.(850-852)CTG>CTT	p.L284L		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	284						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		ACAAAGATCTGCTCTTGGGAG	0.577			NA							Schinzel-Giedion_syndrome				9	19					2.17888e-05	2.56906e-05	0.006214	1	0
DYM	54808	broad.mit.edu	37	18	46917985	46917985	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:46917985G>T	uc002ldi.1	-	3	536	c.171C>A	c.(169-171)ACC>ACA	p.T57T	DYM_uc010xdf.1_Silent_p.T57T	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	57						Golgi apparatus					0						AGACTGAAATGGTTGCTTCCT	0.323			NA											37	41					4.64027e-19	7.90464e-19	0.01441	1	0
SMAD4	4089	broad.mit.edu	37	18	48575058	48575058	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:48575058G>T	uc010xdp.1	+	3	790	c.252G>T	c.(250-252)GTG>GTT	p.V84V	SMAD4_uc010xdo.1_RNA	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	84	MH1.				BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.?(4)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		ttttCTAGGTGGCTGGTCGGA	0.229			NA							Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				8	18					0.00307968	0.00332356	0.00308	1	0
ALPK2	115701	broad.mit.edu	37	18	56205108	56205108	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:56205108G>T	uc002lhj.3	-	5	2525	c.2311C>A	c.(2311-2313)CCT>ACT	p.P771T	ALPK2_uc002lhk.1_Missense_Mutation_p.P102T	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	771							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						ACAGCCACAGGCTCCCTGAAG	0.517			NA											15	20					2.61681e-11	3.92188e-11	0.00245	1	0
ZNF516	9658	broad.mit.edu	37	18	74091788	74091788	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:74091788G>A	uc010dqx.1	-	3	2517	c.2282C>T	c.(2281-2283)CCG>CTG	p.P761L	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	761	C2H2-type 9; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		GTAAGGACACGGGTGAACGAC	0.612			NA											5	10					0	0	0.001168	0	0
EFNA2	1943	broad.mit.edu	37	19	1295574	1295574	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:1295574G>T	uc002lry.1	+	2	171	c.171G>T	c.(169-171)GGG>GGT	p.G57G		NM_001405	NP_001396	O43921	EFNA2_HUMAN	ephrin-A2 precursor	57					cell-cell signaling	anchored to membrane|plasma membrane	ephrin receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGACGGCGGGGGCTACACGG	0.572			NA											3	3					0.004672	0.00501427	0.004672	1	0
MUM1	84939	broad.mit.edu	37	19	1362247	1362247	+	Splice_Site	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:1362247A>G	uc010xgm.1	+	5	1181	c.1112_splice	c.e5-2	p.E371_splice	MUM1_uc010dsi.2_Splice_Site_p.E303_splice|MUM1_uc002lrz.2_Splice_Site_p.E372_splice|MUM1_uc002lsb.2_Splice_Site_p.E303_splice			Q2TAK8	MUM1_HUMAN	SubName: Full=MUM1 protein;						chromatin organization|DNA repair	nucleus	nucleosome binding|protein binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CATTATTGGCAGAGTGCCAGT	0.438			NA											6	11					0	0	0.001984	0	0
SLC39A3	29985	broad.mit.edu	37	19	2733240	2733240	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:2733240C>A	uc002lwg.2	-	3	708	c.454G>T	c.(454-456)GGC>TGC	p.G152C	SLC39A3_uc010xgy.1_Missense_Mutation_p.G152C	NM_144564	NP_653165	Q9BRY0	S39A3_HUMAN	solute carrier family 39 (zinc transporter),	152	Cytoplasmic (Potential).					integral to membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGCCGTGGCCGTGGGGCTCC	0.726			NA											5	8					0.000602214	0.000667103	0.000602	1	0
ATCAY	85300	broad.mit.edu	37	19	3917771	3917771	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:3917771G>C	uc002lyy.3	+	10	1427	c.997G>C	c.(997-999)GAG>CAG	p.E333Q	ATCAY_uc010xhz.1_Missense_Mutation_p.E339Q|ATCAY_uc010dts.2_Missense_Mutation_p.E90Q	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	333					transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		GGCCAGGAGGGAGAGGTGTGT	0.542			NA											10	23					0	0	0.001855	0	0
C19orf59	199675	broad.mit.edu	37	19	7743422	7743422	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:7743422G>T	uc002mhh.1	+	5	444	c.419G>T	c.(418-420)TGG>TTG	p.W140L	TRAPPC5_uc002mhi.1_5'Flank|TRAPPC5_uc002mhj.1_5'Flank|TRAPPC5_uc002mhk.1_5'Flank	NM_174918	NP_777578	Q8IX19	MCEM1_HUMAN	mast cell-expressed membrane protein 1	140	Extracellular (Potential).					integral to membrane				skin(1)	1						AAGAGAGGCTGGGATTCCGTT	0.527			NA									OREG0025208	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	29					2.61681e-11	3.92188e-11	0.00245	1	0
MUC16	94025	broad.mit.edu	37	19	9006391	9006391	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:9006391G>C	uc002mkp.2	-	45	39831	c.39627C>G	c.(39625-39627)AGC>AGG	p.S13209R	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.S26R|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAACACTGGTGCTCTTGAACA	0.562			NA											11	87					0	0	0.001855	0	0
MUC16	94025	broad.mit.edu	37	19	9017345	9017345	+	Splice_Site	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:9017345C>T	uc002mkp.2	-	26	38182	c.37978_splice	c.e26+1	p.G12660_splice		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16						cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGCTGCTCACCATTGACATA	0.552			NA											46	103					0	0	0.01441	0	0
MUC16	94025	broad.mit.edu	37	19	9091524	9091524	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:9091524G>A	uc002mkp.2	-	1	495	c.291C>T	c.(289-291)TCC>TCT	p.S97S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	97	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTTTGCTCGGAGTGTGTCA	0.537			NA											18	105					0	0	0.008871	0	0
ZNF709	163051	broad.mit.edu	37	19	12575498	12575498	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:12575498G>A	uc002mtv.3	-	4	1399	c.1238C>T	c.(1237-1239)ACT>ATT	p.T413I	ZNF709_uc002mtw.3_Missense_Mutation_p.T381I|ZNF709_uc002mtx.3_Missense_Mutation_p.T413I	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	413	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCCAGTGTGAGTTCTTTCATG	0.418	GBM(33;565 669 12371 29134 51667)		NA											5	140					0	0	0.001168	0	0
CC2D1A	54862	broad.mit.edu	37	19	14034553	14034553	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:14034553G>A	uc002mxo.2	+	17	2168	c.1869G>A	c.(1867-1869)CTG>CTA	p.L623L	CC2D1A_uc002mxp.2_Silent_p.L623L|CC2D1A_uc010dzh.2_Silent_p.L192L|CC2D1A_uc002mxq.1_Silent_p.L268L	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	623					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			TGGACATTCTGAAGCAAGCCT	0.627			NA											5	59					0	0	0.001168	0	0
SLC1A6	6511	broad.mit.edu	37	19	15082612	15082612	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:15082612C>G	uc002naa.1	-	2	288	c.280G>C	c.(280-282)GAG>CAG	p.E94Q	SLC1A6_uc010dzu.1_Missense_Mutation_p.E94Q|SLC1A6_uc010xod.1_Missense_Mutation_p.R98T|SLC1A6_uc002nab.2_Missense_Mutation_p.E94Q|SLC1A6_uc002nac.2_Missense_Mutation_p.E94Q|SLC1A6_uc002nad.1_Missense_Mutation_p.E94Q	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	94					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	ATCAGAAGCTCTCCAGGAAAA	0.527			NA											26	52					0	0	0.007291	0	0
CASP14	23581	broad.mit.edu	37	19	15166240	15166240	+	Splice_Site	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:15166240G>T	uc010dzv.1	+	6	829	c.521_splice	c.e6-1	p.G174_splice	CASP14_uc002naf.2_Splice_Site_p.G174_splice	NM_012114	NP_036246	P31944	CASPE_HUMAN	caspase 14 precursor						apoptosis|cell differentiation|epidermis development|proteolysis	cytoplasm|nucleus	cysteine-type endopeptidase activity			skin(2)|ovary(1)|lung(1)	4						GGAATTCCCAGGATACATCGC	0.542			NA											24	49					5.45024e-15	8.70256e-15	0.00333	1	0
BST2	684	broad.mit.edu	37	19	17514602	17514602	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:17514602C>A	uc002ngl.2	-	4	454	c.445G>T	c.(445-447)GCG>TCG	p.A149S	uc010eat.1_5'Flank|uc002ngm.1_5'Flank	NM_004335	NP_004326	Q10589	BST2_HUMAN	bone marrow stromal cell antigen 2 precursor	149	Extracellular (Potential).|				B cell activation|cell proliferation|cell-cell signaling|defense response to virus|humoral immune response|innate immune response|multicellular organismal development|positive regulation of I-kappaB kinase/NF-kappaB cascade	anchored to membrane|Golgi apparatus|integral to plasma membrane|late endosome	protein homodimerization activity|signal transducer activity			ovary(3)	3						TTCTTGTCCGCGATTCTCACG	0.612			NA											24	33					0.000375601	0.000420845	0.00278	1	0
FAM129C	199786	broad.mit.edu	37	19	17651213	17651213	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:17651213G>T	uc010xpr.1	+	10	1223	c.1085G>T	c.(1084-1086)GGA>GTA	p.G362V	FAM129C_uc010xpq.1_Missense_Mutation_p.G362V|FAM129C_uc002ngy.3_Missense_Mutation_p.G88V|FAM129C_uc010xpu.1_Missense_Mutation_p.G88V|FAM129C_uc002ngz.3_RNA|FAM129C_uc010eaw.2_Missense_Mutation_p.G88V|FAM129C_uc002nhb.2_5'UTR	NM_173544	NP_775815	Q86XR2	NIBL2_HUMAN	B-cell novel protein 1 isoform a	362											0						GATATCAGGGGACCGCTCGAG	0.706			NA											6	21					0.00621372	0.00664459	0.006214	1	0
SLC5A5	6528	broad.mit.edu	37	19	18004572	18004572	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:18004572C>A	uc002nhr.3	+	15	2165	c.1818C>A	c.(1816-1818)CCC>CCA	p.P606P		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	606	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GCTTCCTGCCCACCAATGAGG	0.587	Melanoma(65;1008 1708 7910 46650)		NA											7	8					4.68919e-08	6.17498e-08	0.008291	1	0
ELL	8178	broad.mit.edu	37	19	18576628	18576628	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:18576628C>A	uc002njh.2	-	3	356	c.284G>T	c.(283-285)TGC>TTC	p.C95F	ELL_uc010ebq.2_Missense_Mutation_p.C38F|ELL_uc002njg.2_5'UTR	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	95					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		CTGCTGGATGCAGTCGAAGCT	0.662			NA	T	MLL	AL								17	23					0.000295444	0.000332303	0.014323	1	0
NCAN	1463	broad.mit.edu	37	19	19330057	19330057	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:19330057G>T	uc002nlz.2	+	3	506	c.407G>T	c.(406-408)GGG>GTG	p.G136V		NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	136	Ig-like V-type.				axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			AGTGACTCTGGGCTGTACCGC	0.672			NA											5	13					4.096e-09	5.76985e-09	0.001168	1	0
LOC284441	284441	broad.mit.edu	37	19	20370222	20370222	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:20370222C>A	uc002nov.2	+	1	1766	c.1015C>A	c.(1015-1017)CGA>AGA	p.R339R		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						TGTGACTGTTCGATAAACTCC	0.413			NA											7	29					7.48243e-07	9.4702e-07	0.006214	1	0
ZNF100	163227	broad.mit.edu	37	19	21910143	21910143	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:21910143T>C	uc002nqi.2	-	5	1170	c.971A>G	c.(970-972)AAA>AGA	p.K324R	ZNF100_uc002nqh.2_Missense_Mutation_p.K260R	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	324	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTAAAAGCTTTGCCACATTC	0.408			NA											34	69					0	0	0.00874	0	0
ZNF100	163227	broad.mit.edu	37	19	21910147	21910147	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:21910147C>A	uc002nqi.2	-	5	1166	c.967G>T	c.(967-969)GGC>TGC	p.G323C	ZNF100_uc002nqh.2_Missense_Mutation_p.G259C	NM_173531	NP_775802	Q8IYN0	ZN100_HUMAN	zinc finger protein 100	323	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAAGCTTTGCCACATTCTGTA	0.403			NA											34	68					7.63091e-17	1.2561e-16	0.007835	1	0
ZNF208	7757	broad.mit.edu	37	19	22155850	22155850	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:22155850C>T	uc002nqp.2	-	5	1835	c.1686G>A	c.(1684-1686)GAG>GAA	p.E562E	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGTAGGGCTTCTCTCCAGCAT	0.383			NA											3	63					0	0	0.004672	0	0
TSHZ3	57616	broad.mit.edu	37	19	31768367	31768367	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:31768367C>T	uc002nsy.3	-	2	2397	c.2332G>A	c.(2332-2334)GAC>AAC	p.D778N		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	778					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					AAATAGCGGTCGAGGTGGTCT	0.572			NA											7	34					0	0	0.00308	0	0
RHPN2	85415	broad.mit.edu	37	19	33490580	33490580	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:33490580C>T	uc002nuf.2	-	10	1203	c.1137G>A	c.(1135-1137)GAG>GAA	p.E379E	RHPN2_uc010xro.1_Silent_p.E228E|RHPN2_uc002nue.2_Silent_p.E109E	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	379	BRO1.				signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					ACAGGCACTTCTCCTGGTGGT	0.582			NA											6	57					0	0	0.001168	0	0
MAG	4099	broad.mit.edu	37	19	35791212	35791212	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:35791212T>A	uc002nyy.1	+	6	1024	c.875T>A	c.(874-876)CTG>CAG	p.L292Q	MAG_uc002nyx.1_Missense_Mutation_p.L292Q|MAG_uc010eds.1_Missense_Mutation_p.L267Q|MAG_uc002nyz.1_Missense_Mutation_p.L292Q	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	292	Ig-like C2-type 2.|Extracellular (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			CTCCTGGAGCTGGAGGAGGTG	0.682			NA											8	13					0	0	0.004482	0	0
NPHS1	4868	broad.mit.edu	37	19	36333395	36333395	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:36333395T>C	uc002oby.2	-	18	2392	c.2392A>G	c.(2392-2394)ACG>GCG	p.T798A		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	798	Ig-like C2-type 7.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGGCGCCCCGTTGGTCCCCTG	0.622			NA											7	75					0	0	0.006214	0	0
NPHS1	4868	broad.mit.edu	37	19	36339557	36339557	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:36339557C>A	uc002oby.2	-	9	1152	c.1152G>T	c.(1150-1152)ATG>ATT	p.M384I		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	384	Ig-like C2-type 4.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTGTCTCCTCCATGGGCAGCA	0.632			NA											6	17					1.12685e-05	1.35871e-05	0.004482	1	0
HKR1	284459	broad.mit.edu	37	19	37854448	37854448	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:37854448G>T	uc002ogb.2	+	6	2020	c.1751G>T	c.(1750-1752)TGT>TTT	p.C584F	HKR1_uc002ofx.2_Missense_Mutation_p.C300F|HKR1_uc002ofy.2_Missense_Mutation_p.C300F|HKR1_uc002oga.2_Missense_Mutation_p.C566F|HKR1_uc010xto.1_Missense_Mutation_p.C566F|HKR1_uc002ogc.2_Missense_Mutation_p.C565F|HKR1_uc010xtp.1_Missense_Mutation_p.C523F|HKR1_uc002ogd.2_Missense_Mutation_p.C523F	NM_181786	NP_861451	P10072	HKR1_HUMAN	GLI-Kruppel family member HKR1	584	C2H2-type 11.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGCAGGGAGTGTGGGCAAGGC	0.532			NA											11	22					3.07112e-06	3.74932e-06	0.010729	1	0
ZNF527	84503	broad.mit.edu	37	19	37879792	37879792	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:37879792G>A	uc010efk.1	+	5	952	c.841G>A	c.(841-843)GAT>AAT	p.D281N	ZNF527_uc002ogf.3_Missense_Mutation_p.D249N|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	281	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGAATGTGGTGATGCCTTTAG	0.383			NA											33	133					0	0	0.004289	0	0
RASGRP4	115727	broad.mit.edu	37	19	38901791	38901791	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:38901791G>T	uc002oir.2	-	15	2030	c.1816C>A	c.(1816-1818)CCT>ACT	p.P606T	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Missense_Mutation_p.P537T|RASGRP4_uc010xub.1_Missense_Mutation_p.P572T|RASGRP4_uc010xuc.1_Missense_Mutation_p.P514T|RASGRP4_uc010xud.1_Missense_Mutation_p.P509T|RASGRP4_uc010xue.1_Missense_Mutation_p.P417T|RASGRP4_uc010egb.2_Missense_Mutation_p.P592T	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	606					activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GATGGGACAGGAGCTCCGGGG	0.612			NA											16	20					1.66031e-10	2.41424e-10	0.003954	1	0
IL28A	282616	broad.mit.edu	37	19	39759454	39759454	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:39759454T>A	uc002oku.1	+	2	200	c.148T>A	c.(148-150)TCT>ACT	p.S50T		NM_172138	NP_742150	Q8IZJ0	IL28A_HUMAN	interleukin 28A precursor	50					response to virus	extracellular space	cytokine activity			ovary(1)|skin(1)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;5.39e-26)|all cancers(26;4.1e-23)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CAAGTCCCTGTCTCCACAGGA	0.632			NA											11	15					0	0	0.001855	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580582	40580582	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:40580582C>T	uc002omy.2	-	6	1992	c.1767G>A	c.(1765-1767)GAG>GAA	p.E589E	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Silent_p.E589E|ZNF780A_uc010xvh.1_Silent_p.E590E	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	589	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					CTTTCCCACACTCCTTACATT	0.393			NA											4	147					0	0	0.004482	0	0
SPTBN4	57731	broad.mit.edu	37	19	41062044	41062044	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:41062044G>T	uc002ony.2	+	25	5225	c.5139G>T	c.(5137-5139)AAG>AAT	p.K1713N	SPTBN4_uc002onx.2_Missense_Mutation_p.K1713N|SPTBN4_uc002onz.2_Missense_Mutation_p.K1713N|SPTBN4_uc010egx.2_Missense_Mutation_p.K456N|SPTBN4_uc002ooa.2_Missense_Mutation_p.K389N	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1713	Spectrin 14.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			TGGCGCTCAAGGAGCTGGGTG	0.647			NA											12	12					6.40141e-05	7.41349e-05	0.010729	1	0
CYP2A7	1549	broad.mit.edu	37	19	41388078	41388078	+	Missense_Mutation	SNP	G	G	A	rs149348812		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:41388078G>A	uc002opm.2	-	1	580	c.38C>T	c.(37-39)GCC>GTC	p.A13V	CYP2A7_uc002opo.2_Intron|CYP2A7_uc002opn.2_Missense_Mutation_p.A13V	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	13						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			AGTCAGGCAGGCCAGCAAGGC	0.572			NA											3	64					0	0	0.00308	0	0
CYP2A7	1549	broad.mit.edu	37	19	41388100	41388100	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:41388100G>T	uc002opm.2	-	1	558	c.16C>A	c.(16-18)CTG>ATG	p.L6M	CYP2A7_uc002opo.2_Intron|CYP2A7_uc002opn.2_Missense_Mutation_p.L6M	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	6						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			ACCAGAAGCAGCCCTGAGGCC	0.567			NA											3	61					0.000157383	0.000179081	0.00308	1	0
PSG6	5675	broad.mit.edu	37	19	43414963	43414963	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:43414963C>T	uc002ovj.1	-	3	527	c.475G>A	c.(475-477)GAG>AAG	p.E159K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.E166K|PSG6_uc002ovi.2_Missense_Mutation_p.E160K|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.E159K|PSG6_uc002ovg.1_Missense_Mutation_p.E159K	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	159	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TCCATGACCTCCCTGGGGTTT	0.532			NA											14	176					0	0	0.007413	0	0
IRGQ	126298	broad.mit.edu	37	19	44097349	44097349	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:44097349T>C	uc002oww.2	-	2	819	c.701A>G	c.(700-702)GAC>GGC	p.D234G	IRGQ_uc010eiv.2_Missense_Mutation_p.D234G	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	234							protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				AAGGCCCACGTCAGCCTTGCC	0.687			NA											7	37					0	0	0.008291	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45731239	45731239	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:45731239G>A	uc002pay.1	-	4	327	c.286C>T	c.(286-288)CTG>TTG	p.L96L		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	96										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		TACCTCTGCAGGAACTCTGCC	0.622			NA											6	26					0	0	0.004482	0	0
PTGIR	5739	broad.mit.edu	37	19	47127112	47127112	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:47127112G>C	uc002pex.2	-	2	484	c.371C>G	c.(370-372)CCC>CGC	p.P124R		NM_000960	NP_000951	P43119	PI2R_HUMAN	prostaglandin I2 (prostacyclin) receptor (IP)	124	Cytoplasmic (Potential).				cell-cell signaling|G-protein signaling, coupled to cyclic nucleotide second messenger|platelet activation	integral to plasma membrane	G-protein coupled receptor activity|guanyl-nucleotide exchange factor activity				0		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000327)|all cancers(93;0.000641)|Epithelial(262;0.0174)|GBM - Glioblastoma multiforme(486;0.0331)	Dinoprost Tromethamine(DB01160)|Dinoprostone(DB00917)|Epoprostenol(DB01240)|Iloprost(DB01088)|Misoprostol(DB00929)	GTAGAGGTAGGGGTGGCTCAG	0.692			NA											12	11					0	0	0.001855	0	0
C5AR1	728	broad.mit.edu	37	19	47824025	47824025	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:47824025G>T	uc002pgj.1	+	2	1040	c.991G>T	c.(991-993)GAG>TAG	p.E331*		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	331	Cytoplasmic (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		CGTGGTTAGGGAGAGCAAGTC	0.622			NA											10	37					1.76689e-08	2.40791e-08	0.006214	1	0
SHANK1	50944	broad.mit.edu	37	19	51192119	51192119	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:51192119C>T	uc002psx.1	-	16	2173	c.2154G>A	c.(2152-2154)ATG>ATA	p.M718I	SHANK1_uc002psw.1_Missense_Mutation_p.M102I	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	718	PDZ.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GGAAGTCTCCCATTCGCAGTC	0.647			NA											4	3					0	0	0.000602	0	0
ZNF347	84671	broad.mit.edu	37	19	53644353	53644353	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:53644353C>A	uc002qbb.1	-	5	1797	c.1728G>T	c.(1726-1728)AAG>AAT	p.K576N	ZNF347_uc010eql.1_Missense_Mutation_p.K577N|ZNF347_uc002qbc.1_Missense_Mutation_p.K577N	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	576	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		GAGTGAAGACCTTGCCACACT	0.413	Melanoma(64;205 1597 17324 45721)		NA											36	134					1.30998e-17	2.18082e-17	0.005524	1	0
KIR2DL1	3802	broad.mit.edu	37	19	55294961	55294961	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:55294961T>C	uc002qhb.1	+	7	879	c.841T>C	c.(841-843)TCT>CCT	p.S281P	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_5'Flank|KIR2DL3_uc010erw.1_Missense_Mutation_p.S282P|KIR2DL1_uc002qgz.1_Missense_Mutation_p.S191P|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.S307P	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	281	Cytoplasmic (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GGACCAAGAGTCTGCAGGAAA	0.507	GBM(72;624 1217 3963 34152 38303)		NA											6	106					0	0	0.004482	0	0
NLRP5	126206	broad.mit.edu	37	19	56539104	56539104	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:56539104A>G	uc002qmj.2	+	7	1505	c.1505A>G	c.(1504-1506)CAC>CGC	p.H502R	NLRP5_uc002qmi.2_Missense_Mutation_p.H483R	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	502	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		ACAGGCCTGCACGCCGCTTTT	0.632			NA											5	17					0	0	0.000602	0	0
GALP	85569	broad.mit.edu	37	19	56688566	56688566	+	Splice_Site	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:56688566T>C	uc002qmo.1	+	2	169	c.87_splice	c.e2+2	p.R29_splice	GALP_uc010eti.2_Splice_Site_p.R29_splice	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor						neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		GCCCACCGGGTAACGCCTCCC	0.592			NA											4	19					0	0	0.001984	0	0
ALLC	55821	broad.mit.edu	37	2	3749982	3749982	+	Silent	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:3749982T>C	uc010ewt.2	+	12	1166	c.1005T>C	c.(1003-1005)GAT>GAC	p.D335D	ALLC_uc002qyf.2_Silent_p.D106D	NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	354							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		ATCTGTTCGATAGCCTGACCC	0.587			NA								HNSCC(21;0.051)			4	16					0	0	0.001984	0	0
ZNF512	84450	broad.mit.edu	37	2	27840351	27840351	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:27840351G>T	uc002rla.2	+	13	1395	c.1308G>T	c.(1306-1308)GTG>GTT	p.V436V	ZNF512_uc010ylv.1_Silent_p.V357V|ZNF512_uc010ylw.1_Silent_p.V407V|ZNF512_uc002rlb.2_Silent_p.V357V|ZNF512_uc010ylx.1_Silent_p.V357V|ZNF512_uc002rlc.2_Silent_p.V357V|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_Silent_p.V329V	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	436					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GAAACTTTGTGGCTGGAAAAT	0.383			NA											17	29					5.03518e-11	7.43229e-11	0.007413	1	0
SLC4A1AP	22950	broad.mit.edu	37	2	27907997	27907997	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:27907997G>A	uc002rlk.3	+	10	2251	c.1969G>A	c.(1969-1971)GAA>AAA	p.E657K		NM_018158	NP_060628	Q9BWU0	NADAP_HUMAN	solute carrier family 4 (anion exchanger),	657	Glu-rich.					cytoplasm|nucleus	double-stranded RNA binding|protein binding				0	Acute lymphoblastic leukemia(172;0.155)					ggaagaggaagaagagaaaga	0.363			NA											8	11					0	0	0.00308	0	0
ABCG5	64240	broad.mit.edu	37	2	44053653	44053653	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:44053653C>T	uc002rtn.2	-	6	782	c.642G>A	c.(640-642)ATG>ATA	p.M214I	ABCG5_uc002rtm.2_Intron|ABCG5_uc002rto.2_Intron|ABCG5_uc002rtp.2_Intron	NM_022436	NP_071881	Q9H222	ABCG5_HUMAN	ATP-binding cassette sub-family G member 5	214	ABC transporter.|Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				CATCAAACAGCATGACCTCTG	0.502			NA											30	77					0	0	0.004289	0	0
BCL11A	53335	broad.mit.edu	37	2	60687643	60687643	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:60687643A>G	uc002sae.1	-	4	2632	c.2404T>C	c.(2404-2406)TGT>CGT	p.C802R	BCL11A_uc002sab.2_Intron|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Intron|BCL11A_uc010ypj.1_Intron|BCL11A_uc002sad.1_Missense_Mutation_p.C650R|BCL11A_uc002saf.1_Missense_Mutation_p.C768R	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	802	C2H2-type 6.				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CAAATTTCACATTTGTAAACG	0.438			NA	T	IGH@	B-CLL								13	29					0	0	0.00245	0	0
CTNNA2	1496	broad.mit.edu	37	2	80874880	80874881	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:80874880_80874881CC>AA	uc010ysh.1	+	18	2750_2751	c.2745_2746CC>AA	c.(2743-2748)CCCCTT>CCAATT	p.L916I	CTNNA2_uc010yse.1_Missense_Mutation_p.L868I|CTNNA2_uc010ysf.1_Missense_Mutation_p.L868I|CTNNA2_uc010ysg.1_Missense_Mutation_p.L823I|CTNNA2_uc010ysi.1_Missense_Mutation_p.L500I|CTNNA2_uc010ysj.1_Missense_Mutation_p.L197I	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	916					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AGAAGAAGCCCCTTGTGAAGAG	0.47			NA											34	60					0	0	0.004672	0	0
SH3RF3	344558	broad.mit.edu	37	2	109964268	109964268	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:109964268G>A	uc010ywt.1	+	2	712	c.712G>A	c.(712-714)GGC>AGC	p.G238S		NM_001099289	NP_001092759	Q8TEJ3	SH3R3_HUMAN	SH3 domain containing ring finger 3	238	SH3 1.						zinc ion binding			ovary(1)	1						CGAGCTGCACGGCACACAGGG	0.582			NA											13	26					0	0	0.006122	0	0
FAM123C	205147	broad.mit.edu	37	2	131521341	131521341	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:131521341C>A	uc002trw.2	+	2	1886	c.1696C>A	c.(1696-1698)CAG>AAG	p.Q566K	FAM123C_uc010fmv.2_Missense_Mutation_p.Q566K|FAM123C_uc010fms.1_Missense_Mutation_p.Q566K|FAM123C_uc010fmt.1_Missense_Mutation_p.Q566K|FAM123C_uc010fmu.1_Missense_Mutation_p.Q566K	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	566										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		ACCCAGCAGGCAGGAGCTGTG	0.692			NA											3	11					6.4e-05	7.41349e-05	0.004672	1	0
LOC401010	401010	broad.mit.edu	37	2	132200831	132200831	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:132200831C>A	uc002tst.2	-	1	1637	c.1171G>T	c.(1171-1173)GAG>TAG	p.E391*		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						AGCGCCAGCTCCGGGAAGCCG	0.642			NA											10	9					3.27435e-08	4.34111e-08	0.00245	1	0
GPR39	2863	broad.mit.edu	37	2	133174748	133174748	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:133174748C>T	uc002ttl.2	+	1	602	c.133C>T	c.(133-135)CTT>TTT	p.L45F		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	45	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						CGTGATGGGCCTTCTGGGGAA	0.522			NA											13	41					0	0	0.013537	0	0
LCT	3938	broad.mit.edu	37	2	136567006	136567006	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:136567006C>T	uc002tuu.1	-	8	2922	c.2911G>A	c.(2911-2913)GTG>ATG	p.V971M		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	971	3.|Extracellular (Potential).|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity	p.V971L(1)		ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TAGGCCTTCACCTTCAAAGCT	0.498			NA											20	65					0	0	0.003954	0	0
LRP1B	53353	broad.mit.edu	37	2	141709435	141709435	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:141709435C>A	uc002tvj.1	-	19	3934	c.2962G>T	c.(2962-2964)GAC>TAC	p.D988Y	LRP1B_uc010fnl.1_Missense_Mutation_p.D170Y	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	988	Extracellular (Potential).|LDL-receptor class A 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTGCCAGAGTCGCAGTGCCAT	0.453	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			6	55					5.9392e-07	7.54961e-07	0.001168	1	0
LRP1B	53353	broad.mit.edu	37	2	141819784	141819784	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:141819784C>G	uc002tvj.1	-	8	2044	c.1072G>C	c.(1072-1074)GGG>CGG	p.G358R	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	358	Extracellular (Potential).|LDL-receptor class B 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CGGTTCATCCCATCCATGTCA	0.428	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			28	29					0	0	0.010818	0	0
NEB	4703	broad.mit.edu	37	2	152408338	152408338	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:152408338C>A	uc010fnx.2	-	101	14946	c.14755G>T	c.(14755-14757)GTG>TTG	p.V4919L	NEB_uc002txr.2_Missense_Mutation_p.V1342L	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4919	Nebulin 134.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ACACTGTGCACATAGTCATAG	0.483			NA											12	24					7.03913e-09	9.82126e-09	0.013537	1	0
KCNJ3	3760	broad.mit.edu	37	2	155555453	155555453	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:155555453C>A	uc002tyv.1	+	1	361	c.166C>A	c.(166-168)CAG>AAG	p.Q56K	KCNJ3_uc010zce.1_Missense_Mutation_p.Q56K	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	56	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	GTGCAATGTACAGCACGGCAA	0.622			NA											15	15					4.93089e-13	7.58399e-13	0.00245	1	0
NR4A2	4929	broad.mit.edu	37	2	157184479	157184479	+	Missense_Mutation	SNP	T	T	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:157184479T>G	uc002tyz.3	-	5	1464	c.1042A>C	c.(1042-1044)AAA>CAA	p.K348Q	NR4A2_uc002tyx.3_Missense_Mutation_p.K285Q|NR4A2_uc010zcf.1_Missense_Mutation_p.K348Q|NR4A2_uc010zcg.1_5'UTR	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	348	Pro-rich.				cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						CTCTTCGGTTTCGAGGGCAAA	0.622			NA											4	4					0	0	0.001168	0	0
FAP	2191	broad.mit.edu	37	2	163074507	163074507	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:163074507G>C	uc002ucd.2	-	9	959	c.751C>G	c.(751-753)CCA>GCA	p.P251A	FAP_uc010zct.1_Missense_Mutation_p.P226A|FAP_uc010fpd.2_Intron|FAP_uc010fpe.1_Missense_Mutation_p.P218A	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	251	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						TTTGGGTATGGAATATTTATT	0.343			NA											10	85					0	0	0.00245	0	0
STK39	27347	broad.mit.edu	37	2	169020276	169020276	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:169020276T>C	uc002uea.2	-	4	705	c.545A>G	c.(544-546)TAT>TGT	p.Y182C		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	182	Protein kinase.				response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						TCTGTGTAGATAGTCTAAGCC	0.378			NA											4	52					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179642637	179642637	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:179642637G>T	uc010zfg.1	-	25	4498	c.4274C>A	c.(4273-4275)GCA>GAA	p.A1425E	TTN_uc010zfh.1_Missense_Mutation_p.A1379E|TTN_uc010zfi.1_Missense_Mutation_p.A1379E|TTN_uc010zfj.1_Missense_Mutation_p.A1379E|TTN_uc002unb.2_Missense_Mutation_p.A1425E|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1425							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGACATCCTTGCAGGTGACAT	0.507			NA											17	33					2.4624e-09	3.50234e-09	0.008871	1	0
NCKAP1	10787	broad.mit.edu	37	2	183853815	183853815	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:183853815C>A	uc002upc.2	-	9	1292	c.890G>T	c.(889-891)CGG>CTG	p.R297L	NCKAP1_uc002upb.2_Missense_Mutation_p.R303L	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1	297					apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			AACTTCATCCCGAAAGAGAGA	0.408			NA											12	13					1.3612e-06	1.69716e-06	0.003163	1	0
AOX1	316	broad.mit.edu	37	2	201534333	201534333	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:201534333C>T	uc002uvx.2	+	34	3935	c.3834C>T	c.(3832-3834)TCC>TCT	p.S1278S	AOX1_uc010zhf.1_Silent_p.S834S|AOX1_uc010fsu.2_Silent_p.S644S	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	1278					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	TGGGGTGTTCCGTGTTTTTCG	0.483			NA											11	220					0	0	0.00245	0	0
FAM126B	285172	broad.mit.edu	37	2	201888717	201888717	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:201888717G>A	uc002uws.3	-	3	204	c.16C>T	c.(16-18)CGT>TGT	p.R6C	FAM126B_uc002uwu.2_5'UTR|FAM126B_uc002uwv.2_Missense_Mutation_p.R6C|FAM126B_uc002uww.1_Missense_Mutation_p.R6C	NM_173822	NP_776183	Q8IXS8	F126B_HUMAN	hypothetical protein LOC285172	6						intracellular				ovary(1)	1						ACAACACAACGGTCAGTTCCC	0.323			NA											26	40					0	0	0.012213	0	0
MARCH4	57574	broad.mit.edu	37	2	217142435	217142435	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:217142435G>T	uc002vgb.2	-	3	2592	c.825C>A	c.(823-825)ATC>ATA	p.I275I		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	275	Helical; (Potential).					Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		TCCCGTAGCAGATCTGGAAGA	0.562			NA											38	135					1.96642e-18	3.33041e-18	0.006999	1	0
DOCK10	55619	broad.mit.edu	37	2	225717798	225717798	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:225717798T>C	uc010fwz.1	-	17	2169	c.1930A>G	c.(1930-1932)ATG>GTG	p.M644V	DOCK10_uc002vob.2_Missense_Mutation_p.M638V	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	644							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TGAGCCATCATGTTGAAAGGC	0.323			NA											15	47					0	0	0.00278	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446778	226446778	+	Silent	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:226446778T>C	uc002voe.2	+	4	820	c.645T>C	c.(643-645)CAT>CAC	p.H215H	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	215										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TCAAAAAGCATGGGCCCCGGA	0.572			NA											8	126					0	0	0.006214	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447461	226447461	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:226447461G>T	uc002voe.2	+	4	1503	c.1328G>T	c.(1327-1329)GGG>GTG	p.G443V	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Missense_Mutation_p.G213V	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	443	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GTCAGCATGGGGAGGTCCCTG	0.632			NA											19	19					8.10497e-08	1.06253e-07	0.010504	1	0
GIGYF2	26058	broad.mit.edu	37	2	233675975	233675975	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:233675975G>T	uc002vti.3	+	19	2257	c.1920G>T	c.(1918-1920)TTG>TTT	p.L640F	GIGYF2_uc010zmj.1_Missense_Mutation_p.L640F|GIGYF2_uc002vtg.2_Missense_Mutation_p.L634F|GIGYF2_uc002vtj.3_Missense_Mutation_p.L661F|GIGYF2_uc002vtk.3_Missense_Mutation_p.L640F|GIGYF2_uc002vth.3_Missense_Mutation_p.L634F|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.L471F|GIGYF2_uc002vtq.3_5'UTR	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	640	Gln-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		CACAGGTTTTGGCCCAACAGC	0.428			NA											14	46					1.99824e-07	2.56791e-07	0.00499	1	0
NEU2	4759	broad.mit.edu	37	2	233899170	233899170	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:233899170G>T	uc010zmn.1	+	2	546	c.546G>T	c.(544-546)CGG>CGT	p.R182R		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	182							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		ACGCCTACCGGAAACTTCACC	0.652			NA											11	19					4.68919e-08	6.17498e-08	0.008291	1	0
KLHL30	377007	broad.mit.edu	37	2	239057702	239057702	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:239057702G>T	uc002vxr.1	+	6	1373	c.1340G>T	c.(1339-1341)CGC>CTC	p.R447L		NM_198582	NP_940984	Q0D2K2	KLH30_HUMAN	kelch-like 30	465	Kelch 4.										0		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		TCCTCGCCTCGCTGTGCTGCA	0.652			NA											7	24					8.12818e-05	9.35779e-05	0.001984	1	0
KIF1A	547	broad.mit.edu	37	2	241666337	241666337	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:241666337G>T	uc002vzy.2	-	37	3871	c.3725C>A	c.(3724-3726)GCT>GAT	p.A1242D	KIF1A_uc010fzk.2_Missense_Mutation_p.A1343D|KIF1A_uc002vzz.1_Missense_Mutation_p.A1351D|KIF1A_uc002vzw.2_5'Flank|KIF1A_uc002vzx.2_5'Flank	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1242					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		GTCCCACGCAGCCTCAAATTG	0.532			NA											6	6					0.00116845	0.00127269	0.001168	1	0
TMC2	117532	broad.mit.edu	37	20	2596792	2596792	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:2596792G>T	uc002wgf.1	+	15	1897	c.1882G>T	c.(1882-1884)GCT>TCT	p.A628S	TMC2_uc002wgg.1_Missense_Mutation_p.A612S	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	628	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						GCCTTCATATGCTGAGTTTGA	0.343			NA											9	61					2.74318e-10	3.97897e-10	0.006214	1	0
FASTKD5	60493	broad.mit.edu	37	20	3128579	3128579	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:3128579T>C	uc002whz.2	-	2	1449	c.1138A>G	c.(1138-1140)ATA>GTA	p.I380V	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	380					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						TGAGGAGCTATCTCTCCAATC	0.443			NA											12	77					0	0	0.001855	0	0
PLCB1	23236	broad.mit.edu	37	20	8698344	8698344	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:8698344C>G	uc002wnb.2	+	14	1365	c.1362C>G	c.(1360-1362)AGC>AGG	p.S454R	PLCB1_uc010zrb.1_Missense_Mutation_p.S353R|PLCB1_uc002wna.2_Missense_Mutation_p.S454R|PLCB1_uc002wnc.1_Missense_Mutation_p.S353R|PLCB1_uc002wnd.1_Missense_Mutation_p.S31R	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	454	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CTCTTCCAAGCCCTATGGATT	0.408			NA											45	77					0	0	0.01441	0	0
PLCB1	23236	broad.mit.edu	37	20	8745828	8745828	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:8745828C>T	uc002wnb.2	+	26	2756	c.2753C>T	c.(2752-2754)TCG>TTG	p.S918L	PLCB1_uc010zrb.1_Missense_Mutation_p.S817L|PLCB1_uc002wna.2_Missense_Mutation_p.S918L|PLCB1_uc002wnc.1_Missense_Mutation_p.S817L|PLCB1_uc002wnd.1_Missense_Mutation_p.S495L	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	918					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						CAACAGAAATCGTTTGTGAAA	0.398			NA											22	32					0	0	0.00632	0	0
PAK7	57144	broad.mit.edu	37	20	9538263	9538263	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:9538263C>T	uc002wnl.2	-	8	2280	c.1735G>A	c.(1735-1737)GAT>AAT	p.D579N	PAK7_uc002wnk.2_Missense_Mutation_p.D579N|PAK7_uc002wnj.2_Missense_Mutation_p.D579N|PAK7_uc010gby.1_Missense_Mutation_p.D579N	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	579	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ACCCGGCCATCGCTTGTCAGG	0.443			NA											17	72					0	0	0.010504	0	0
TMEM90B	79953	broad.mit.edu	37	20	24645992	24645992	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:24645992C>G	uc002wtw.1	+	4	1262	c.629C>G	c.(628-630)GCC>GGC	p.A210G		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	210	Extracellular (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						ACCAACAAAGCCGTGGCCAAG	0.567			NA											36	163					0	0	0.01441	0	0
FRG1B	284802	broad.mit.edu	37	20	29625877	29625877	+	Missense_Mutation	SNP	G	G	A	rs7266938	by1000genomes	TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:29625877G>A	uc010ztl.1	+	2	63	c.31G>A	c.(31-33)GCC>ACC	p.A11T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTACAGAATCGCCCTGAAATC	0.353			NA											4	54					0	0	0.000602	0	0
FRG1B	284802	broad.mit.edu	37	20	29628243	29628243	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:29628243T>C	uc010ztl.1	+	3	187	c.155T>C	c.(154-156)TTG>TCG	p.L52S	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.L4S					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGGCTTTGTTGGCCTCAAAT	0.353			NA											6	92					0	0	0.006214	0	0
FRG1B	284802	broad.mit.edu	37	20	29628245	29628245	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:29628245G>A	uc010ztl.1	+	3	189	c.157G>A	c.(157-159)GCC>ACC	p.A53T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.A5T					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GGCTTTGTTGGCCTCAAATAG	0.353			NA											6	92					0	0	0.008291	0	0
ZNFX1	57169	broad.mit.edu	37	20	47887258	47887258	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:47887258C>A	uc002xui.2	-	3	1338	c.1091G>T	c.(1090-1092)AGC>ATC	p.S364I		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	364							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GATAGCAGTGCTGTCGTATTT	0.478			NA											34	87					0.000159656	0.000181315	0.004878	1	0
BMP7	655	broad.mit.edu	37	20	55746136	55746136	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:55746136G>C	uc010gip.1	-	7	1704	c.1175C>G	c.(1174-1176)CCC>CGC	p.P392R	BMP7_uc010giq.1_Missense_Mutation_p.P326R	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	392					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			GCAGGGCTTGGGCACCGTTTC	0.532			NA											38	40					0	0	0.01441	0	0
GNAS	2778	broad.mit.edu	37	20	57480483	57480483	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:57480483C>T	uc002xzw.2	+	6	2692	c.2407C>T	c.(2407-2409)CGT>TGT	p.R803C	GNAS_uc002xzt.2_3'UTR|GNAS_uc010gjq.2_Missense_Mutation_p.R101C|GNAS_uc002xzx.2_Missense_Mutation_p.R101C|GNAS_uc010gjr.2_Missense_Mutation_p.R51C|GNAS_uc002xzy.2_Missense_Mutation_p.R86C|GNAS_uc002yaa.2_Missense_Mutation_p.R146C|GNAS_uc010zzt.1_Missense_Mutation_p.R161C|GNAS_uc002yab.2_Intron|GNAS_uc002yad.2_Missense_Mutation_p.R51C|GNAS_uc002yae.2_Missense_Mutation_p.R85C	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	160					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			TGAAGGAGTGCGTGCCTGCTA	0.468	Colon(117;935 1597 6045 8307 46442)		NA	Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			6	117					0	0	0.00308	0	0
OGFR	11054	broad.mit.edu	37	20	61444144	61444144	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:61444144G>T	uc002ydj.2	+	7	1212	c.1177G>T	c.(1177-1179)GAG>TAG	p.E393*	OGFR_uc002ydk.2_Nonsense_Mutation_p.E376*|OGFR_uc002ydl.2_Nonsense_Mutation_p.E341*|uc011aam.1_3'UTR	NM_007346	NP_031372	Q9NZT2	OGFR_HUMAN	opioid growth factor receptor	393					regulation of cell growth	cytoplasm|membrane|nucleus	opioid receptor activity				0	Breast(26;3.65e-08)					GAGCCGGCGGGAGCAGCCGCC	0.652			NA											11	11					3.07112e-06	3.74932e-06	0.010729	1	0
TPTE	7179	broad.mit.edu	37	21	10921972	10921972	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr21:10921972C>A	uc002yip.1	-	18	1419	c.1051G>T	c.(1051-1053)GCC>TCC	p.A351S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.A333S|TPTE_uc002yir.1_Missense_Mutation_p.A313S|TPTE_uc010gkv.1_Missense_Mutation_p.A213S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	351	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATAAGGAAGGCACAAACCATA	0.338			NA											14	39					1.99824e-07	2.56791e-07	0.00499	1	0
TMPRSS15	5651	broad.mit.edu	37	21	19732101	19732101	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr21:19732101C>A	uc002ykw.2	-	8	884	c.853G>T	c.(853-855)GGT>TGT	p.G285C		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	285	Extracellular (Potential).|CUB 1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GATCCTACACCTTCATAAATA	0.259			NA											11	28					1.08611e-07	1.41122e-07	0.010729	1	0
TIAM1	7074	broad.mit.edu	37	21	32624181	32624181	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr21:32624181C>T	uc002yow.1	-	6	1760	c.1288G>A	c.(1288-1290)GCA>ACA	p.A430T	TIAM1_uc011adk.1_Missense_Mutation_p.A430T|TIAM1_uc011adl.1_Missense_Mutation_p.A430T|TIAM1_uc002yox.1_Missense_Mutation_p.A38T	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	430					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GTGCCCTGTGCGGCGGTCAGC	0.662			NA											22	57					0	0	0.007291	0	0
ITSN1	6453	broad.mit.edu	37	21	35122620	35122620	+	Silent	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr21:35122620T>C	uc002yta.1	+	6	787	c.519T>C	c.(517-519)GCT>GCC	p.A173A	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Silent_p.A173A|ITSN1_uc010gmg.2_Silent_p.A136A|ITSN1_uc010gmh.2_RNA|ITSN1_uc002ysw.2_Silent_p.A173A|ITSN1_uc010gmi.2_Silent_p.A136A|ITSN1_uc010gmj.2_Silent_p.A57A|ITSN1_uc002ysy.2_Silent_p.A173A|ITSN1_uc002ysx.2_Silent_p.A136A|ITSN1_uc002ytb.1_Silent_p.A173A|ITSN1_uc002ytc.1_Silent_p.A173A|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Silent_p.A136A|ITSN1_uc010gml.2_RNA|ITSN1_uc002ytj.2_Silent_p.A173A|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Silent_p.A107A	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	173					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						CTGCATTTGCTCATCCTGGTA	0.443			NA											17	108					0	0	0.014323	0	0
SH3BGR	6450	broad.mit.edu	37	21	40871829	40871829	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr21:40871829C>T	uc002yya.2	+	4	636	c.582C>T	c.(580-582)GCC>GCT	p.A194A	SH3BGR_uc002yxz.2_Silent_p.A83A	NM_007341	NP_031367	P55822	SH3BG_HUMAN	SH3-binding domain and glutamic acid-rich	194	Glu-rich (acidic).				protein complex assembly	cytosol	SH3 domain binding|SH3/SH2 adaptor activity				0		all_cancers(19;1.16e-23)|all_epithelial(19;1.22e-20)|Prostate(19;2.55e-06)|Breast(209;0.0133)		STAD - Stomach adenocarcinoma(101;0.00151)		TCCCTGAAGCCCAGGAGAAGA	0.483			NA											13	61					0	0	0.001855	0	0
THOC5	8563	broad.mit.edu	37	22	29908010	29908010	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr22:29908010C>A	uc003afr.2	-	19	2132	c.1797G>T	c.(1795-1797)CGG>CGT	p.R599R	THOC5_uc003afq.2_Silent_p.R260R|THOC5_uc003afs.2_Silent_p.R599R|THOC5_uc003aft.2_Silent_p.R599R|THOC5_uc003afu.2_Silent_p.R599R|THOC5_uc010gvo.2_Silent_p.R343R	NM_001002878	NP_001002878	Q13769	THOC5_HUMAN	THO complex 5	599					intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			breast(3)	3						TGGGTCTTACCCGAATGTTGT	0.572			NA											9	31					7.48243e-07	9.4702e-07	0.006214	1	0
ZMAT5	55954	broad.mit.edu	37	22	30136662	30136662	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr22:30136662T>A	uc003agm.2	-	5	499	c.248A>T	c.(247-249)CAG>CTG	p.Q83L	ZMAT5_uc003agn.2_Missense_Mutation_p.Q83L	NM_019103	NP_061976	Q9UDW3	ZMAT5_HUMAN	zinc finger, matrin type 5	83					mRNA processing	cytoplasm|U12-type spliceosomal complex	nucleic acid binding|zinc ion binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(5;0.000597)|all cancers(5;0.0534)|Epithelial(10;0.0574)			GCTCAGCTCCTGCAGGTCTCG	0.632			NA											6	8					0	0	0.00308	0	0
SLC5A1	6523	broad.mit.edu	37	22	32464549	32464549	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr22:32464549C>A	uc003amc.2	+	5	671	c.439C>A	c.(439-441)CTT>ATT	p.L147I	SLC5A1_uc011alz.1_Missense_Mutation_p.L20I	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	147	Helical; (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						CTACCTTTCCCTTCTGTCCCT	0.582			NA											11	51					7.93312e-07	9.95462e-07	0.00245	1	0
RFPL2	10739	broad.mit.edu	37	22	32589087	32589087	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr22:32589087C>T	uc003amg.3	-	4	1294	c.358G>A	c.(358-360)GTC>ATC	p.V120I	RFPL2_uc003ame.3_Missense_Mutation_p.V59I|RFPL2_uc003amf.3_Missense_Mutation_p.V30I|RFPL2_uc003amh.3_Missense_Mutation_p.V30I	NM_001098527	NP_001091997	O75678	RFPL2_HUMAN	ret finger protein-like 2 isoform 2	120	RING-type; degenerate.						zinc ion binding			skin(1)	1						TTGAGGCAGACGGCGCATCCA	0.532			NA											3	64					0	0	0.004672	0	0
ISX	91464	broad.mit.edu	37	22	35480424	35480424	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr22:35480424G>T	uc003anj.2	+	3	1381	c.430G>T	c.(430-432)GGC>TGC	p.G144C	ISX_uc011amg.1_Missense_Mutation_p.G132C	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	144						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GGAGAAGATTGGCAACCTGGG	0.547			NA											4	14					0.00116845	0.00127269	0.001168	1	0
FBLN1	2192	broad.mit.edu	37	22	45937139	45937139	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr22:45937139C>A	uc003bgj.1	+	9	1100	c.953C>A	c.(952-954)CCG>CAG	p.P318Q	FBLN1_uc003bgg.1_Missense_Mutation_p.P318Q|FBLN1_uc003bgh.2_Missense_Mutation_p.P318Q|FBLN1_uc010gzz.2_Missense_Mutation_p.P356Q|FBLN1_uc003bgi.1_Missense_Mutation_p.P318Q	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	318	EGF-like 4; calcium-binding (Potential).				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		ATCAGTGCCCCGTGCCCTATC	0.527			NA											12	47					7.93312e-07	9.95462e-07	0.00245	1	0
HDAC11	79885	broad.mit.edu	37	3	13546094	13546094	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:13546094C>G	uc003bxy.2	+	10	1088	c.955C>G	c.(955-957)CTG>GTG	p.L319V	HDAC11_uc010heb.2_3'UTR|HDAC11_uc011aux.1_Missense_Mutation_p.L127V|HDAC11_uc011auy.1_Missense_Mutation_p.L268V	NM_024827	NP_079103	Q96DB2	HDA11_HUMAN	histone deacetylase 11 isoform 1	319	Histone deacetylase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex|plasma membrane	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding			ovary(2)	2						CATACTTAATCTGTTTGGCCT	0.622			NA											5	37					0	0	0.001168	0	0
COLQ	8292	broad.mit.edu	37	3	15531057	15531057	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:15531057G>A	uc003bzx.2	-	2	320	c.194C>T	c.(193-195)CCA>CTA	p.P65L	HACL1_uc011avr.1_RNA|COLQ_uc003bzv.2_Missense_Mutation_p.P55L|COLQ_uc003bzz.2_Missense_Mutation_p.P65L|COLQ_uc010heo.2_Missense_Mutation_p.P65L|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_5'UTR|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	65	PRAD.				acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						TCTGAAGAATGGTGGTGGGAA	0.562			NA											4	27					0	0	0.000602	0	0
DCP1A	55802	broad.mit.edu	37	3	53326317	53326317	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:53326317G>A	uc003dgs.3	-	7	1258	c.1165C>T	c.(1165-1167)CTC>TTC	p.L389F	DCP1A_uc003dgt.3_RNA	NM_018403	NP_060873	Q9NPI6	DCP1A_HUMAN	DCP1 decapping enzyme homolog A	389					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus	hydrolase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000164)|KIRC - Kidney renal clear cell carcinoma(197;0.00525)|Kidney(197;0.00579)|OV - Ovarian serous cystadenocarcinoma(275;0.0647)		ACGCTTGGGAGGGATGTGCCA	0.542			NA											24	58					0	0	0.00333	0	0
CADPS	8618	broad.mit.edu	37	3	62751566	62751566	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:62751566C>A	uc003dll.2	-	2	895	c.535G>T	c.(535-537)GCT>TCT	p.A179S	CADPS_uc003dlm.2_Missense_Mutation_p.A179S|CADPS_uc003dln.2_Missense_Mutation_p.A179S	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	179					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		CTCTGCACAGCGTTCATGAAG	0.522			NA											25	20					5.77227e-19	9.8045e-19	0.008361	1	0
MAGI1	9223	broad.mit.edu	37	3	65438997	65438997	+	Silent	SNP	T	T	C	rs147479917		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:65438997T>C	uc003dmn.2	-	6	1504	c.978A>G	c.(976-978)ACA>ACG	p.T326T	MAGI1_uc003dmm.2_Silent_p.T326T|MAGI1_uc003dmo.2_Silent_p.T326T|MAGI1_uc003dmp.2_Silent_p.T326T|MAGI1_uc010hny.2_Silent_p.T211T|MAGI1_uc003dmr.2_Silent_p.T327T	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	326	WW 1.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		CTAACCAAGATGTTGTTTTCG	0.413			NA											37	20					0	0	0.010771	0	0
EPHA6	285220	broad.mit.edu	37	3	96962882	96962883	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:96962882_96962883GG>TT	uc010how.1	+	5	1400_1401	c.1357_1358GG>TT	c.(1357-1359)GGG>TTG	p.G453L	EPHA6_uc003drp.1_Missense_Mutation_p.G453L	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	358	Fibronectin type-III 1.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGACACAGGAGGGAGAAAAGAT	0.465			NA											4	7					0	0	0.004672	0	0
GPR128	84873	broad.mit.edu	37	3	100365486	100365486	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:100365486C>T	uc003duc.2	+	10	1452	c.1184C>T	c.(1183-1185)ACA>ATA	p.T395I	GPR128_uc011bhc.1_Missense_Mutation_p.T96I	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	395	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						GACTGGGACACATATGGCTGT	0.388	Pancreas(87;185 1975 7223 18722)		NA											20	16					0	0	0.014323	0	0
POPDC2	64091	broad.mit.edu	37	3	119367247	119367247	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:119367247C>G	uc003ecx.1	-	3	1003	c.869G>C	c.(868-870)TGT>TCT	p.C290S	POPDC2_uc010hqw.1_Missense_Mutation_p.C290S|POPDC2_uc003ecy.1_Missense_Mutation_p.C108S	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	290						integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		AGCTGGCTCACAGACTTCCTC	0.602			NA											33	37					0	0	0.00623	0	0
COL6A6	131873	broad.mit.edu	37	3	130284056	130284056	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:130284056C>A	uc010htl.2	+	3	911	c.880C>A	c.(880-882)CAG>AAG	p.Q294K		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	294	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AGAGGTTCTCCAGCATATACA	0.453			NA											15	16					8.60227e-14	1.34425e-13	0.004007	1	0
A4GNT	51146	broad.mit.edu	37	3	137849858	137849858	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:137849858A>T	uc003ers.2	-	2	443	c.241T>A	c.(241-243)TGG>AGG	p.W81R		NM_016161	NP_057245	Q9UNA3	A4GCT_HUMAN	alpha-1,4-N-acetylglucosaminyltransferase	81	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	acetylglucosaminyltransferase activity|galactosyltransferase activity			central_nervous_system(1)	1						ACCACAGGCCACTCAGGATAA	0.493			NA											19	18					0	0	0.00278	0	0
DHX36	170506	broad.mit.edu	37	3	154042092	154042092	+	Silent	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:154042092T>A	uc003ezy.3	-	1	195	c.114A>T	c.(112-114)GGA>GGT	p.G38G	DHX36_uc010hvq.2_Silent_p.G38G|DHX36_uc003ezz.3_Silent_p.G38G	NM_020865	NP_065916	Q9H2U1	DHX36_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 36	38	Gly-rich.					cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CGCCGCCGCCTCCTCCGGAGC	0.706			NA											17	9					0	0	0.012319	0	0
BDH1	622	broad.mit.edu	37	3	197273292	197273292	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr3:197273292C>A	uc003fxr.2	-	3	425	c.23G>T	c.(22-24)AGA>ATA	p.R8I	BDH1_uc003fxs.2_Missense_Mutation_p.R8I|BDH1_uc003fxt.2_Intron|BDH1_uc003fxu.2_Missense_Mutation_p.R8I	NM_203314	NP_976059	Q02338	BDH_HUMAN	3-hydroxybutyrate dehydrogenase, type 1	8					cellular lipid metabolic process|ketone body biosynthetic process|ketone body catabolic process	mitochondrial matrix	3-hydroxybutyrate dehydrogenase activity			ovary(1)	1	all_cancers(143;3.35e-10)|Ovarian(172;0.0418)|Breast(254;0.0437)	Lung NSC(153;0.118)	Epithelial(36;3.52e-24)|all cancers(36;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(49;2.32e-19)|LUSC - Lung squamous cell carcinoma(58;1.02e-06)|Lung(62;1.34e-06)	GBM - Glioblastoma multiforme(93;0.0977)	NADH(DB00157)	TGACAGGGGTCTGGAGAGGCG	0.537			NA											26	24					2.09667e-21	3.62432e-21	0.003755	1	0
ZNF518B	85460	broad.mit.edu	37	4	10445615	10445616	+	Missense_Mutation	DNP	CC	CC	AA	rs80340183		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:10445615_10445616CC>AA	uc003gmn.2	-	3	2824_2825	c.2337_2338GG>TT	c.(2335-2340)AGGGTT>AGTTTT	p.779_780RV>SF		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	779_780					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						GAATTAAGAACCCTCAACACAG	0.465			NA											4	34					0	0	0.004672	0	0
SLIT2	9353	broad.mit.edu	37	4	20530694	20530694	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:20530694G>C	uc003gpr.1	+	16	1789	c.1585G>C	c.(1585-1587)GAG>CAG	p.E529Q	SLIT2_uc003gps.1_Missense_Mutation_p.E521Q	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	529	LRRNT 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CAAAATCCCGGAGCACATTCC	0.443			NA											17	55					0	0	0.008871	0	0
GBA3	57733	broad.mit.edu	37	4	22749343	22749343	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:22749343G>T	uc003gqp.3	+	3	802	c.711G>T	c.(709-711)GTG>GTT	p.V237V	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Silent_p.V238V	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	237					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						CCAACTCAGTGTCTGACCAGG	0.433			NA											12	111					1.5842e-08	2.19466e-08	0.001855	1	0
SEL1L3	23231	broad.mit.edu	37	4	25780734	25780734	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:25780734A>C	uc003gru.3	-	16	2701	c.2549T>G	c.(2548-2550)CTG>CGG	p.L850R	SEL1L3_uc003grv.2_Missense_Mutation_p.L257R	NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	850	Sel1-like 7.					integral to membrane	binding				0						GAATGTCTCCAGGTTGCCTGT	0.453			NA											12	66					0	0	0.010729	0	0
KDR	3791	broad.mit.edu	37	4	55962478	55962478	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:55962478G>T	uc003has.2	-	19	2948	c.2646C>A	c.(2644-2646)CTC>CTA	p.L882L	KDR_uc003hat.1_Silent_p.L882L	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	882	Protein kinase.|Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	GTTCAGACATGAGAGCTCGAT	0.463			NA	Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			22	60					3.08376e-08	4.0977e-08	0.00333	1	0
POLR2B	5431	broad.mit.edu	37	4	57891066	57891066	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:57891066G>T	uc003hcl.1	+	22	3022	c.2979G>T	c.(2977-2979)AAG>AAT	p.K993N	POLR2B_uc011cae.1_Missense_Mutation_p.K986N|POLR2B_uc011caf.1_Missense_Mutation_p.K918N|POLR2B_uc003hcm.1_Missense_Mutation_p.K486N	NM_000938	NP_000929	P30876	RPB2_HUMAN	DNA directed RNA polymerase II polypeptide B	993					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(2)	2	Glioma(25;0.08)|all_neural(26;0.181)					CGGCTAACAAGGGTGAAATTG	0.338			NA											30	60					2.49991e-28	4.50754e-28	0.003271	1	0
TMPRSS11A	339967	broad.mit.edu	37	4	68797728	68797728	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:68797728G>T	uc003hdr.1	-	4	433	c.312C>A	c.(310-312)AAC>AAA	p.N104K	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.N101K	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	104	SEA.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						TGACTACTTGGTTCTTGATAT	0.353	NSCLC(26;2 894 10941 14480 22546)		NA											4	35					2.0095e-06	2.47388e-06	0.001984	1	0
UGT2B15	7366	broad.mit.edu	37	4	69533895	69533895	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:69533895T>A	uc011cal.1	-	2	774	c.736A>T	c.(736-738)ACA>TCA	p.T246S		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	246					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TCAAATAATGTAGTGGGTCTT	0.368			NA											24	33					0	0	0.004878	0	0
COPS4	51138	broad.mit.edu	37	4	83996468	83996468	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:83996468C>T	uc003hoa.2	+	10	1245	c.1106C>T	c.(1105-1107)ACG>ATG	p.T369M	COPS4_uc003hob.2_Silent_p.N418N|COPS4_uc010ijw.2_Missense_Mutation_p.T401M|COPS4_uc010ijx.2_Missense_Mutation_p.R341C	NM_016129	NP_057213	Q9BT78	CSN4_HUMAN	COP9 signalosome subunit 4	369					cullin deneddylation	cytoplasm|signalosome	protein binding			kidney(1)	1		Hepatocellular(203;0.114)				GCCCTGCCAACGTGGGATAAG	0.373			NA											13	30					0	0	0.00245	0	0
CDS1	1040	broad.mit.edu	37	4	85560101	85560101	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:85560101G>C	uc011ccv.1	+	9	1333	c.835G>C	c.(835-837)GGA>CGA	p.G279R	CDS1_uc010ike.1_Missense_Mutation_p.G83R	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	279	Helical; (Potential).				signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		GACTTGGGAAGGATTCATTGG	0.279			NA											6	10					0	0	0.004482	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95194771	95194771	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:95194771C>G	uc003htc.3	+	12	1831	c.1576C>G	c.(1576-1578)CTA>GTA	p.L526V	SMARCAD1_uc003htb.3_Missense_Mutation_p.L526V|SMARCAD1_uc003htd.3_Missense_Mutation_p.L526V|SMARCAD1_uc010ila.2_Missense_Mutation_p.L389V|SMARCAD1_uc011cdw.1_Missense_Mutation_p.L96V	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	526	ATP (By similarity).|Helicase ATP-binding.				chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		TTTTTAGGGCCTAGGAAAAAC	0.313			NA											3	7					0	0	0.004672	0	0
AGXT2L1	64850	broad.mit.edu	37	4	109663733	109663733	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:109663733G>T	uc003hzc.2	-	13	1588	c.1407C>A	c.(1405-1407)GAC>GAA	p.D469E	AGXT2L1_uc010imc.2_Missense_Mutation_p.D463E|AGXT2L1_uc011cfm.1_Missense_Mutation_p.D429E|AGXT2L1_uc011cfn.1_Missense_Mutation_p.D396E|AGXT2L1_uc011cfo.1_Missense_Mutation_p.D411E	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	469					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		CAGTGGTGCTGTCCCTAAGCA	0.488			NA											8	47					0.000274275	0.000309087	0.004482	1	0
COL25A1	84570	broad.mit.edu	37	4	109753571	109753571	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:109753571C>A	uc003hze.1	-	31	2206	c.1675G>T	c.(1675-1677)GGA>TGA	p.G559*	COL25A1_uc003hzg.2_Nonsense_Mutation_p.G559*|COL25A1_uc003hzd.2_RNA|COL25A1_uc003hzf.2_Nonsense_Mutation_p.G356*	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	559	Extracellular (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		CCATGGGGTCCCATAGGACCA	0.393			NA											5	15					0.00198382	0.00214883	0.001984	1	0
ANK2	287	broad.mit.edu	37	4	114279924	114279924	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:114279924C>G	uc003ibe.3	+	38	10250	c.10150C>G	c.(10150-10152)CCA>GCA	p.P3384A	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.P686A|ANK2_uc011cgb.1_Missense_Mutation_p.P3399A	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3351					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AAGCATCGCACCAGATAATAG	0.463			NA											13	69					0	0	0.00245	0	0
FHDC1	85462	broad.mit.edu	37	4	153896290	153896290	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:153896290C>T	uc003inf.2	+	11	1922	c.1847C>T	c.(1846-1848)TCA>TTA	p.S616L		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	616					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					AACCCACCCTCAGCACAGGCG	0.657			NA											10	63					0	0	0.003163	0	0
DCHS2	54798	broad.mit.edu	37	4	155287395	155287395	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:155287395C>T	uc003inw.2	-	5	661	c.661G>A	c.(661-663)GTG>ATG	p.V221M	DCHS2_uc003inx.2_Missense_Mutation_p.V815M	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	221	Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AGGGACGACACGTTTCCTGGA	0.458			NA											5	21					0	0	0.001168	0	0
RXFP1	59350	broad.mit.edu	37	4	159520580	159520580	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:159520580C>T	uc003ipz.2	+	4	471	c.389C>T	c.(388-390)GCA>GTA	p.A130V	RXFP1_uc010iqj.1_5'UTR|RXFP1_uc011cja.1_Missense_Mutation_p.A49V|RXFP1_uc010iqo.2_Missense_Mutation_p.A130V|RXFP1_uc011cjb.1_Missense_Mutation_p.A76V|RXFP1_uc010iqk.2_5'UTR|RXFP1_uc011cjc.1_Missense_Mutation_p.A49V|RXFP1_uc011cjd.1_Missense_Mutation_p.A49V|RXFP1_uc010iql.2_5'UTR|RXFP1_uc011cje.1_Missense_Mutation_p.A157V|RXFP1_uc010iqm.2_Missense_Mutation_p.A97V|RXFP1_uc011cjf.1_5'UTR|RXFP1_uc010iqn.2_Missense_Mutation_p.A76V	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	130	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		AATGTGACTGCAATGTAAGTA	0.373			NA											4	17					0	0	0.009096	0	0
FSTL5	56884	broad.mit.edu	37	4	162459355	162459355	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:162459355G>C	uc003iqh.2	-	10	1711	c.1275C>G	c.(1273-1275)ATC>ATG	p.I425M	FSTL5_uc003iqi.2_Missense_Mutation_p.I424M|FSTL5_uc010iqv.2_Missense_Mutation_p.I424M	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	425	Ig-like 2.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		AAAGAGAAGAGATGTCTTCAT	0.423			NA											24	93					0	0	0.005443	0	0
TLL1	7092	broad.mit.edu	37	4	166795155	166795155	+	Silent	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:166795155T>C	uc003irh.1	+	1	746	c.99T>C	c.(97-99)TAT>TAC	p.Y33Y	TLL1_uc011cjn.1_Silent_p.Y33Y|TLL1_uc011cjo.1_5'UTR	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	33					cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		GCCTCGATTATGATTACACTT	0.542			NA											55	77					0	0	0.01441	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	143307	143307	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:143307G>T	uc003jak.2	+	2	605	c.555G>T	c.(553-555)CAG>CAT	p.Q185H		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	185					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		TCCCCAGCCAGGTGCCCAAGC	0.672			NA											29	25					1.88708e-17	3.12382e-17	0.008361	1	0
CCDC127	133957	broad.mit.edu	37	5	205459	205459	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:205459C>A	uc003jam.1	-	3	836	c.736G>T	c.(736-738)GAA>TAA	p.E246*		NM_145265	NP_660308	Q96BQ5	CC127_HUMAN	coiled-coil domain containing 127	246											0			all cancers(22;0.0236)|Lung(60;0.113)			TTCTTCAGTTCGACAACGAGT	0.438			NA											83	47					6.44939e-38	1.19599e-37	0.01441	1	0
SLC12A7	10723	broad.mit.edu	37	5	1057703	1057703	+	Missense_Mutation	SNP	G	G	A	rs140477969		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:1057703G>A	uc003jbu.2	-	22	2975	c.2909C>T	c.(2908-2910)GCG>GTG	p.A970V		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	970	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	CGTAGGCGGCGCTTGGGTCCT	0.632			NA											54	187					0	0	0.01441	0	0
CLPTM1L	81037	broad.mit.edu	37	5	1323984	1323984	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:1323984C>A	uc003jch.2	-	12	1244	c.1198G>T	c.(1198-1200)GCC>TCC	p.A400S	CLPTM1L_uc003jcg.2_Missense_Mutation_p.A231S	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like	400	Cytoplasmic (Potential).				apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		TACTTCATGGCCTGCAGGGAA	0.532			NA											57	32					2.02627e-32	3.69905e-32	0.01441	1	0
KIAA0947	23379	broad.mit.edu	37	5	5463945	5463945	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:5463945G>T	uc003jdm.3	+	13	4720	c.4498G>T	c.(4498-4500)GGT>TGT	p.G1500C		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1500										ovary(1)|central_nervous_system(1)	2						TTCAAGCAGTGGTCAGAGCAC	0.458			NA											3	50					0.00024832	0.000280918	0.009096	1	0
MTRR	4552	broad.mit.edu	37	5	7873601	7873601	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:7873601C>T	uc003jed.2	+	3	356	c.326C>T	c.(325-327)CCG>CTG	p.P109L	MTRR_uc010itn.1_Intron|MTRR_uc003jee.3_Missense_Mutation_p.P82L|MTRR_uc003jef.3_RNA|MTRR_uc003jeg.3_Intron|MTRR_uc010ito.2_RNA	NM_024010	NP_076915	Q9UBK8	MTRR_HUMAN	methionine synthase reductase isoform 2	109	Flavodoxin-like.				methionine biosynthetic process	cytosol	[methionine synthase] reductase activity|flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding			ovary(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)|L-Methionine(DB00134)	CAAACACTGCCGGTTGATTTC	0.458			NA											22	123					0	0	0.005443	0	0
ANKH	56172	broad.mit.edu	37	5	14769250	14769250	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:14769250C>A	uc003jfm.3	-	2	478	c.147G>T	c.(145-147)CTG>CTT	p.L49L		NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	49	Cytoplasmic (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						CGTAGCTGGCCAGCATCTCGA	0.522			NA											6	52					5.9392e-07	7.54961e-07	0.001168	1	0
MARCH11	441061	broad.mit.edu	37	5	16091127	16091127	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:16091127G>C	uc003jfo.2	-	3	970	c.757C>G	c.(757-759)CTG>GTG	p.L253V	MARCH11_uc010itw.1_Missense_Mutation_p.L9V	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	253	Helical; (Potential).					cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						ATTAAGAACAGGGATCCTAGG	0.448			NA											13	9					0	0	0.00499	0	0
CDH18	1016	broad.mit.edu	37	5	19520842	19520842	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:19520842A>G	uc003jgc.2	-	9	1813	c.1436T>C	c.(1435-1437)CTG>CCG	p.L479P	CDH18_uc003jgd.2_Missense_Mutation_p.L479P|CDH18_uc011cnm.1_Missense_Mutation_p.L479P	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	479	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					ATTGACATCCAGAACTCTAAT	0.408			NA											32	231					0	0	0.00623	0	0
C7	730	broad.mit.edu	37	5	40955492	40955492	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:40955492C>T	uc003jmh.2	+	10	1211	c.1097C>T	c.(1096-1098)ACC>ATC	p.T366I	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	366	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				TGTATAGGAACCCAGAACAAT	0.333			NA											22	132					0	0	0.005443	0	0
PIK3R1	5295	broad.mit.edu	37	5	67576452	67576452	+	Nonsense_Mutation	SNP	T	T	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:67576452T>G	uc003jva.2	+	6	1291	c.731T>G	c.(730-732)TTA>TGA	p.L244*	PIK3R1_uc003jvb.2_Nonsense_Mutation_p.L244*	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	244	Rho-GAP.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	CAGTATTTGTTAAAACATTTC	0.383			NA	Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			5	48					0	0	0.001984	0	0
WDR36	134430	broad.mit.edu	37	5	110428091	110428091	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:110428091G>A	uc003kpd.2	+	1	222	c.105G>A	c.(103-105)CTG>CTA	p.L35L	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	35					response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		TAGACACGCTGAAGGGACTGG	0.632			NA											30	16					0	0	0.010818	0	0
CAMK4	814	broad.mit.edu	37	5	110679794	110679794	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:110679794G>T	uc011cvj.1	+	3	333	c.234G>T	c.(232-234)AAG>AAT	p.K78N	CAMK4_uc003kpf.2_Missense_Mutation_p.K78N|CAMK4_uc010jbv.2_5'UTR	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	78	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		AAGTGTTAAAGAAAACAGTAA	0.438			NA											6	19					2.0095e-06	2.47388e-06	0.001984	1	0
ISOC1	51015	broad.mit.edu	37	5	128430635	128430635	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:128430635G>A	uc003kva.2	+	1	194	c.176G>A	c.(175-177)GGC>GAC	p.G59D		NM_016048	NP_057132	Q96CN7	ISOC1_HUMAN	isochorismatase domain containing 1	59						peroxisome	catalytic activity				0		all_cancers(142;0.0813)|Prostate(80;0.0865)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.138)|OV - Ovarian serous cystadenocarcinoma(64;0.164)		AGCCTGTACGGCGACCAGATC	0.637			NA											15	7					0	0	0.00499	0	0
BRD8	10902	broad.mit.edu	37	5	137495798	137495798	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:137495798C>T	uc003lcf.1	-	19	2547	c.2492G>A	c.(2491-2493)CGA>CAA	p.R831Q	BRD8_uc003lcc.1_RNA|BRD8_uc011cyl.1_Missense_Mutation_p.R610Q|BRD8_uc003lcg.2_Missense_Mutation_p.R904Q|BRD8_uc003lci.2_Missense_Mutation_p.R834Q|BRD8_uc003lch.2_Missense_Mutation_p.R725Q|BRD8_uc011cym.1_Missense_Mutation_p.R815Q|BRD8_uc010jer.1_Missense_Mutation_p.R800Q|BRD8_uc011cyn.1_Missense_Mutation_p.R790Q	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	831					cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			ATCTCTCCCTCGAAGACTTTT	0.502			NA											12	87					0	0	0.003163	0	0
PSD2	84249	broad.mit.edu	37	5	139218323	139218323	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:139218323C>A	uc003leu.1	+	13	2139	c.1934C>A	c.(1933-1935)CCC>CAC	p.P645H		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	645					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTGTCGGCCCCTGCTGCCC	0.622			NA											14	22					1.01871e-10	1.48499e-10	0.008871	1	0
PSD2	84249	broad.mit.edu	37	5	139218355	139218355	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:139218355C>A	uc003leu.1	+	13	2171	c.1966C>A	c.(1966-1968)CAG>AAG	p.Q656K		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	656	Potential.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCGCCTCTGCCAGGTACATGT	0.652			NA											17	19					1.9806e-07	2.5621e-07	0.014323	1	0
PCDHB12	56124	broad.mit.edu	37	5	140589465	140589465	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:140589465G>T	uc003liz.2	+	1	1175	c.986G>T	c.(985-987)GGA>GTA	p.G329V	PCDHB12_uc011dak.1_5'UTR	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	329	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGACTTTTTGGAAAATCTACA	0.408			NA											23	14					3.08376e-08	4.0977e-08	0.00333	1	0
PCDHGA5	56110	broad.mit.edu	37	5	140743982	140743982	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:140743982G>A	uc003lju.1	+	1	85	c.85G>A	c.(85-87)GGG>AGG	p.G29R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.G29R	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	29					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCAGGATCCGGGCAGATCCG	0.662			NA											10	9					0	0	0.006214	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140753830	140753830	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:140753830G>A	uc003ljy.1	+	1	180	c.180G>A	c.(178-180)GCG>GCA	p.A60A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Silent_p.A60A	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	60	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGAGTTGGCGGAGCACGGAG	0.602			NA											14	19					0	0	0.003163	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768185	140768185	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:140768185A>C	uc003lkc.1	+	1	734	c.734A>C	c.(733-735)GAC>GCC	p.D245A	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Missense_Mutation_p.D245A	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	245	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCAGTCAAGACGTATACAGG	0.522			NA											5	170					0	0	0.001984	0	0
RARS	5917	broad.mit.edu	37	5	167943881	167943881	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:167943881C>G	uc003lzx.2	+	13	1592	c.1551C>G	c.(1549-1551)ATC>ATG	p.I517M	RARS_uc011deo.1_Missense_Mutation_p.I311M	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	517					arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		ATGACTACATCTTCTCCTTTG	0.418			NA											29	97					0	0	0.003755	0	0
CDYL	9425	broad.mit.edu	37	6	4735027	4735027	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:4735027C>A	uc003mwi.2	+	3	266	c.135C>A	c.(133-135)AGC>AGA	p.S45R		NM_001143971	NP_001137443	Q9Y232	CDYL1_HUMAN	chromodomain protein, Y chromosome-like isoform	45					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	histone acetyltransferase activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0901)|Lung NSC(90;0.244)		OV - Ovarian serous cystadenocarcinoma(45;0.182)		CAGACCCCAGCATCTCCGTGA	0.468			NA											19	48					2.89027e-11	4.28784e-11	0.014323	1	0
LRRC16A	55604	broad.mit.edu	37	6	25466175	25466175	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:25466175T>A	uc011djw.1	+	9	1065	c.689T>A	c.(688-690)CTG>CAG	p.L230Q	LRRC16A_uc010jpx.2_Missense_Mutation_p.L230Q|LRRC16A_uc010jpy.2_Missense_Mutation_p.L230Q|LRRC16A_uc003nez.1_Missense_Mutation_p.L69Q	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	230					actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						GATCTAAAACTGGTAAGTAAT	0.353			NA											33	57					0	0	0.003271	0	0
LRRC16A	55604	broad.mit.edu	37	6	25466178	25466178	+	Splice_Site	SNP	T	T	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:25466178T>G	uc011djw.1	+	9	1066	c.690_splice	c.e9+2	p.L230_splice	LRRC16A_uc010jpx.2_Splice_Site_p.L230_splice|LRRC16A_uc010jpy.2_Splice_Site_p.L230_splice|LRRC16A_uc003nez.1_Splice_Site_p.L69_splice	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A						actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						CTAAAACTGGTAAGTAATCAA	0.358			NA											32	53					0	0	0.013726	0	0
SLC17A4	10050	broad.mit.edu	37	6	25771161	25771161	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:25771161G>T	uc003nfe.2	+	6	746	c.627G>T	c.(625-627)ATG>ATT	p.M209I	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Intron|SLC17A4_uc003nfg.2_Missense_Mutation_p.M146I|SLC17A4_uc010jqa.2_5'Flank	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	209	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						CAGGGTCAATGCTGGGGTCCT	0.448			NA											11	94					7.93312e-07	9.95462e-07	0.00245	1	0
HIST1H3B	8358	broad.mit.edu	37	6	26031935	26031935	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:26031935C>T	uc003nfs.1	-	1	354	c.354G>A	c.(352-354)GTG>GTA	p.V118V		NM_003537	NP_003528	P68431	H31_HUMAN	histone cluster 1, H3b	118					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(2)	2						GCATAATAGTCACTCGCTTAG	0.512			NA											4	63					0	0	0.009096	0	0
HIST1H2BG	8339	broad.mit.edu	37	6	26216739	26216739	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:26216739C>A	uc003ngz.2	-	1	134	c.133G>T	c.(133-135)GTG>TTG	p.V45L	HIST1H2AE_uc003nha.1_5'Flank	NM_003518	NP_003509	P62807	H2B1C_HUMAN	histone cluster 1, H2bg	45					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			ovary(1)	1		all_hematologic(11;0.196)				TGTTTTAGCACCTTGTACACA	0.527			NA											40	155					6.34439e-16	1.02987e-15	0.01441	1	0
OR2J3	442186	broad.mit.edu	37	6	29080190	29080190	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:29080190C>A	uc011dll.1	+	1	523	c.523C>A	c.(523-525)CGC>AGC	p.R175S		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTGTGGACACCGCCAAGTAGA	0.488			NA											19	38					1.33834e-09	1.90819e-09	0.007413	1	0
LRFN2	57497	broad.mit.edu	37	6	40360552	40360552	+	Silent	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:40360552C>G	uc003oph.1	-	3	1965	c.1500G>C	c.(1498-1500)ACG>ACC	p.T500T		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	500	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCGTGAGTGTCGTGGCTGTGT	0.602			NA											4	14					0	0	0.009096	0	0
CUL9	23113	broad.mit.edu	37	6	43171718	43171718	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:43171718C>T	uc003ouk.2	+	20	4227	c.4152C>T	c.(4150-4152)ACC>ACT	p.T1384T	CUL9_uc003oul.2_Silent_p.T1384T|CUL9_uc010jyk.2_Silent_p.T536T	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	1384					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						AGAACATCACCTCTCCCGGTA	0.567			NA											3	36					0	0	0.004672	0	0
GPR115	221393	broad.mit.edu	37	6	47682410	47682410	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:47682410A>C	uc003oza.1	+	6	1687	c.1429A>C	c.(1429-1431)ACA>CCA	p.T477P	GPR115_uc003oyz.1_Missense_Mutation_p.T534P|GPR115_uc003ozb.1_Missense_Mutation_p.T475P	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	477	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						TGTTGCAGTGACATTTTTCAG	0.408	GBM(22;431 510 9010 26644 32828)		NA											50	150					0	0	0.01441	0	0
PKHD1	5314	broad.mit.edu	37	6	51909840	51909840	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:51909840C>A	uc003pah.1	-	25	2915	c.2639G>T	c.(2638-2640)CGT>CTT	p.R880L	PKHD1_uc003pai.2_Missense_Mutation_p.R880L	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	880	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					ATATACCACACGCGTGGCTGC	0.463			NA											7	20					2.17888e-05	2.56906e-05	0.006214	1	0
FHL5	9457	broad.mit.edu	37	6	97052641	97052641	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:97052641G>T	uc003pos.1	+	4	580	c.175G>T	c.(175-177)GAC>TAC	p.D59Y	FHL5_uc003pot.1_Missense_Mutation_p.D59Y	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	59	LIM zinc-binding 1.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		TTGTTACAAAGACCGGCACTG	0.433			NA											10	27					3.07112e-06	3.74932e-06	0.010729	1	0
C6orf167	253714	broad.mit.edu	37	6	97729166	97729166	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:97729166C>G	uc003ppb.2	-	3	503	c.237G>C	c.(235-237)TGG>TGC	p.W79C	C6orf167_uc011eaf.1_Missense_Mutation_p.W79C|C6orf167_uc010kcn.1_5'UTR|C6orf167_uc010kco.1_5'UTR|C6orf167_uc003ppc.2_Missense_Mutation_p.W79C	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	79					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		TTTCAGTAACCCACTGAATGC	0.318			NA											14	26					0	0	0.001855	0	0
SFRS18	25957	broad.mit.edu	37	6	99860520	99860520	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:99860520G>A	uc003ppo.3	-	4	412	c.184C>T	c.(184-186)CCA>TCA	p.P62S	SFRS18_uc003ppp.3_Missense_Mutation_p.P62S|SFRS18_uc011eag.1_Missense_Mutation_p.P62S|SFRS18_uc003ppr.2_Missense_Mutation_p.P62S|SFRS18_uc003ppt.2_Missense_Mutation_p.P62S|SFRS18_uc003pps.2_Missense_Mutation_p.P62S	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	62						nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		TGTCCATTTGGCATCATTCCT	0.453			NA											3	62					0	0	0.009096	0	0
HEY2	23493	broad.mit.edu	37	6	126080295	126080295	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:126080295T>C	uc003qad.2	+	5	552	c.361T>C	c.(361-363)TTC>CTC	p.F121L	HEY2_uc011ebr.1_Missense_Mutation_p.F75L	NM_012259	NP_036391	Q9UBP5	HEY2_HUMAN	hairy/enhancer-of-split related with YRPW motif	121					negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription initiation from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|Notch signaling pathway|smooth muscle cell differentiation|transcription, DNA-dependent	transcriptional repressor complex	histone deacetylase binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0608)|GBM - Glioblastoma multiforme(226;0.0361)|all cancers(137;0.193)		TGCCATGGACTTCATGAGCAT	0.562			NA											7	59					0	0	0.00308	0	0
C6orf174	387104	broad.mit.edu	37	6	127797417	127797417	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:127797417G>A	uc003qbd.2	-	6	2619	c.1754C>T	c.(1753-1755)GCC>GTC	p.A585V	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	585	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		CTTGAGCTCGGCCTCCCTAGT	0.557			NA											14	30					0	0	0.004007	0	0
KIAA1244	57221	broad.mit.edu	37	6	138655328	138655328	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:138655328G>T	uc003qhu.2	+	33	5345	c.5345G>T	c.(5344-5346)AGG>ATG	p.R1782M		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1782					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		AGGACTGCCAGGGAGTTTGAC	0.562			NA											6	14					2.0095e-06	2.47388e-06	0.001984	1	0
C6orf97	80129	broad.mit.edu	37	6	151857490	151857490	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:151857490G>T	uc003qol.2	+	2	184	c.95G>T	c.(94-96)CGG>CTG	p.R32L		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	32	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		CCGGTCACGCGGGAGCAGTTA	0.423			NA											14	42					1.01871e-10	1.48499e-10	0.008871	1	0
SLC22A1	6580	broad.mit.edu	37	6	160557608	160557608	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:160557608G>T	uc003qtc.2	+	6	1092	c.987G>T	c.(985-987)AAG>AAT	p.K329N	SLC22A1_uc003qtd.2_Missense_Mutation_p.K329N	NM_003057	NP_003048	O15245	S22A1_HUMAN	solute carrier family 22 member 1 isoform a	329	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	organic cation transmembrane transporter activity|protein binding				0		Breast(66;0.000776)|Ovarian(120;0.00556)		OV - Ovarian serous cystadenocarcinoma(65;2.73e-17)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		TCACCGAAAAGCTGAGCCCTT	0.602			NA											33	60					1.41504e-22	2.47526e-22	0.011902	1	0
SDK1	221935	broad.mit.edu	37	7	4089086	4089086	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:4089086G>T	uc003smx.2	+	18	2848	c.2709G>T	c.(2707-2709)CAG>CAT	p.Q903H	SDK1_uc010kso.2_Missense_Mutation_p.Q179H	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	903	Fibronectin type-III 3.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GCATCAACCAGGGATACAAGG	0.602			NA											17	37					1.33834e-09	1.90819e-09	0.007413	1	0
MEOX2	4223	broad.mit.edu	37	7	15725928	15725928	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:15725928C>A	uc003stc.2	-	1	381	c.100G>T	c.(100-102)GAC>TAC	p.D34Y	MEOX2_uc011jxw.1_Missense_Mutation_p.D34Y	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	34					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		GACATATGGTCAGATCTTCCA	0.577	Esophageal Squamous(140;197 1769 16409 18257 29929)		NA											12	20					0.000151284	0.00017315	0.001855	1	0
DNAH11	8701	broad.mit.edu	37	7	21906152	21906152	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:21906152G>C	uc003svc.2	+	72	11613	c.11582G>C	c.(11581-11583)TGG>TCG	p.W3861S		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3861					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GCCAAGCAGTGGAGGAAGTGG	0.423			NA							Kartagener_syndrome				7	100					0	0	0.008291	0	0
TBX20	57057	broad.mit.edu	37	7	35288451	35288451	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:35288451C>A	uc011kas.1	-	3	394	c.383G>T	c.(382-384)AGG>ATG	p.R128M		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	128	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						TGGAAACATCCTCCTGACAGA	0.428			NA											21	45					2.4375e-19	4.17653e-19	0.007291	1	0
VPS41	27072	broad.mit.edu	37	7	38835164	38835164	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:38835164C>A	uc003tgy.2	-	9	644	c.618G>T	c.(616-618)GTG>GTT	p.V206V	VPS41_uc003tgz.2_Silent_p.V181V|VPS41_uc010kxn.2_Intron	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	206					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						CATCCCGGGGCACATTGGTGA	0.458			NA											35	70					7.93934e-33	1.46304e-32	0.00623	1	0
ABCA13	154664	broad.mit.edu	37	7	48319189	48319189	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:48319189G>A	uc003toq.2	+	18	8423	c.8398G>A	c.(8398-8400)GAC>AAC	p.D2800N	ABCA13_uc010kys.1_5'Flank	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2800					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTTATATTTTGACACACCTTT	0.328			NA											9	33					0	0	0.004482	0	0
COBL	23242	broad.mit.edu	37	7	51095726	51095726	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:51095726G>A	uc003tpr.3	-	10	3252	c.3067C>T	c.(3067-3069)CCT>TCT	p.P1023S	COBL_uc003tps.2_Missense_Mutation_p.P1080S|COBL_uc011kcl.1_Missense_Mutation_p.P1023S|COBL_uc003tpp.3_Missense_Mutation_p.P809S|COBL_uc003tpq.3_Missense_Mutation_p.P964S|COBL_uc003tpo.3_Missense_Mutation_p.P565S	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1023	Poly-Pro.									skin(3)|ovary(2)	5	Glioma(55;0.08)					GTGTGTGGAGGGGGTGGGTCT	0.632	NSCLC(189;2119 2138 12223 30818 34679)		NA											14	35					0	0	0.003163	0	0
ZNF479	90827	broad.mit.edu	37	7	57193821	57193821	+	Splice_Site	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:57193821C>A	uc010kzo.2	-	4	438	c.167_splice	c.e4-1	p.G56_splice		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479						regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			ACAGCAATACCTGTTTTATTA	0.328			NA											19	33					1.00905e-13	1.56844e-13	0.008871	1	0
ZNF679	168417	broad.mit.edu	37	7	63726427	63726427	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:63726427G>T	uc003tsx.2	+	5	685	c.416G>T	c.(415-417)GGA>GTA	p.G139V		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	139					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						GTGCAAAAAGGAGGTTGTAAT	0.333			NA											6	17					4.096e-09	5.76985e-09	0.001168	1	0
KCTD7	154881	broad.mit.edu	37	7	66098317	66098317	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:66098317C>A	uc003tve.2	+	2	362	c.200C>A	c.(199-201)TCC>TAC	p.S67Y	RABGEF1_uc003tvf.2_Intron|KCTD7_uc003tvd.3_Missense_Mutation_p.S67Y	NM_153033	NP_694578	Q96MP8	KCTD7_HUMAN	potassium channel tetramerisation domain	67	BTB.					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)	3						ACACGCCTGTCCACACTGCGG	0.572			NA											15	50					0.000958276	0.00105159	0.007413	1	0
WBSCR17	64409	broad.mit.edu	37	7	70885934	70885934	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:70885934C>A	uc003tvy.2	+	5	805	c.805C>A	c.(805-807)CGT>AGT	p.R269S	WBSCR17_uc003tvz.2_5'UTR	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	269	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				AAACCGGAAGCGTGTGATCCT	0.542			NA											133	163					6.91809e-85	1.32052e-84	0.01441	1	0
CALN1	83698	broad.mit.edu	37	7	71488689	71488689	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:71488689C>A	uc003twa.3	-	4	855	c.328G>T	c.(328-330)GGT>TGT	p.G110C	CALN1_uc003twb.3_Missense_Mutation_p.G152C|CALN1_uc003twc.3_Missense_Mutation_p.G110C	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	110	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				CCATCGCGACCTTCTGAAGAC	0.418			NA											42	82					1.67886e-27	2.99942e-27	0.01441	1	0
CLIP2	7461	broad.mit.edu	37	7	73811523	73811523	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:73811523A>C	uc003uam.2	+	14	3167	c.2840A>C	c.(2839-2841)AAG>ACG	p.K947T	CLIP2_uc003uan.2_Missense_Mutation_p.K912T	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	947	Potential.					microtubule associated complex				skin(3)	3						CAGAAACTCAAGGATGACATC	0.642			NA											18	81					0	0	0.010504	0	0
CACNA2D1	781	broad.mit.edu	37	7	81611924	81611924	+	Silent	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:81611924T>A	uc003uhr.1	-	24	2170	c.1914A>T	c.(1912-1914)CCA>CCT	p.P638P		NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	650	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CAAAATTATCTGGCTTCAGGG	0.353			NA											47	73					0	0	0.01441	0	0
C7orf63	79846	broad.mit.edu	37	7	89917641	89917641	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:89917641C>A	uc010lep.2	+	15	2001	c.1750C>A	c.(1750-1752)CTT>ATT	p.L584I	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_Missense_Mutation_p.L259I|C7orf63_uc011khj.1_Missense_Mutation_p.L566I|C7orf63_uc011khk.1_Missense_Mutation_p.L146I	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	584							binding			ovary(1)	1						TAATGTACTTCTTTTTAGTAC	0.303			NA											24	119					1.17739e-12	1.80144e-12	0.005443	1	0
ANKIB1	54467	broad.mit.edu	37	7	92027594	92027594	+	Silent	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:92027594T>C	uc003ulw.2	+	20	2977	c.2601T>C	c.(2599-2601)TCT>TCC	p.S867S	ANKIB1_uc010lew.1_Silent_p.S136S	NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	867	UIM.						protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TGCAAGAGTCTGGGCTGGCCC	0.458			NA											15	18					0	0	0.004007	0	0
HEPACAM2	253012	broad.mit.edu	37	7	92821574	92821574	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:92821574G>T	uc003umm.2	-	9	1401	c.1378C>A	c.(1378-1380)CAT>AAT	p.H460N	HEPACAM2_uc003uml.2_Missense_Mutation_p.H448N|HEPACAM2_uc010lff.2_Silent_p.T439T|HEPACAM2_uc011khy.1_Missense_Mutation_p.H483N	NM_001039372	NP_001034461	A8MVW5	HECA2_HUMAN	HEPACAM family member 2 isoform 1	460	Cytoplasmic (Potential).					integral to membrane				ovary(3)|breast(1)|kidney(1)	5						TACTCTGGATGGTCTTGCTGC	0.458			NA											50	74					1.17673e-23	2.06456e-23	0.01441	1	0
PTCD1	26024	broad.mit.edu	37	7	99022666	99022666	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:99022666C>A	uc003uqh.2	-	6	1620	c.1489G>T	c.(1489-1491)GTG>TTG	p.V497L	PTCD1_uc011kiw.1_Missense_Mutation_p.V546L	NM_015545	NP_056360	O75127	PTCD1_HUMAN	pentatricopeptide repeat domain 1	497										ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			CCGGACTCCACCACCTCGGCC	0.617			NA											49	62					3.93605e-18	6.64706e-18	0.01441	1	0
MUC17	140453	broad.mit.edu	37	7	100685958	100685958	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:100685958T>A	uc003uxp.1	+	3	11314	c.11261T>A	c.(11260-11262)CTT>CAT	p.L3754H	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3754	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATAAGCACCCTTGGGACCACT	0.483			NA											100	166					0	0	0.01441	0	0
TRIM56	81844	broad.mit.edu	37	7	100731715	100731715	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:100731715G>T	uc003uxq.2	+	3	1353	c.1122G>T	c.(1120-1122)CAG>CAT	p.Q374H	TRIM56_uc003uxr.2_Intron	NM_030961	NP_112223	Q9BRZ2	TRI56_HUMAN	tripartite motif-containing 56	374					defense response to virus|interferon-beta production|protein K63-linked ubiquitination|response to type I interferon	cytoplasm	ubiquitin-protein ligase activity|zinc ion binding			kidney(1)|central_nervous_system(1)|skin(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)					AGGAGCAGCAGCCCCAGAAGG	0.642	Ovarian(89;1092 1379 22756 38989 39611)		NA											9	20					0.00621372	0.00664459	0.006214	1	0
SERPINE1	5054	broad.mit.edu	37	7	100773858	100773858	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:100773858C>A	uc003uxt.2	+	3	576	c.428C>A	c.(427-429)ACG>AAG	p.T143K	SERPINE1_uc011kkj.1_Missense_Mutation_p.T128K|SERPINE1_uc003uxu.1_5'Flank	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	143					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	TTCCGGAGCACGGTCAAGCAA	0.532			NA											119	274					1.324e-77	2.51903e-77	0.01441	1	0
RELN	5649	broad.mit.edu	37	7	103216019	103216019	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:103216019A>T	uc003vca.2	-	29	4439	c.4279T>A	c.(4279-4281)TGT>AGT	p.C1427S	RELN_uc010liz.2_Missense_Mutation_p.C1427S	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1427	EGF-like 3.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TCACAGAAACACACTCCTGAA	0.433	NSCLC(146;835 1944 15585 22231 52158)		NA											23	45					0	0	0.009535	0	0
IMMP2L	83943	broad.mit.edu	37	7	110526703	110526703	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:110526703G>C	uc003vfq.1	-	5	797	c.354C>G	c.(352-354)ATC>ATG	p.I118M	IMMP2L_uc010ljr.1_Missense_Mutation_p.I118M	NM_032549	NP_115938	Q96T52	IMP2L_HUMAN	IMP2 inner mitochondrial membrane protease-like	118					protein processing involved in protein targeting to mitochondrion|proteolysis	integral to membrane|mitochondrial inner membrane peptidase complex|nucleus	serine-type peptidase activity				0				UCEC - Uterine corpus endometrioid carcinoma (4;0.053)|Epithelial(3;2.27e-07)|all cancers(3;1.36e-05)|STAD - Stomach adenocarcinoma(3;0.00148)|KIRC - Kidney renal clear cell carcinoma(11;0.0339)|Lung(3;0.0375)|Kidney(11;0.0415)|LUSC - Lung squamous cell carcinoma(290;0.173)		CTTCAACCCAGATGTGACCAC	0.398			NA											17	96					0	0	0.014323	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113519437	113519437	+	Silent	SNP	G	G	C	rs142416047		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:113519437G>C	uc010ljy.1	-	4	1741	c.1710C>G	c.(1708-1710)ACC>ACG	p.T570T		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	570					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TGGGGATTGCGGTATGTTCGC	0.468			NA											29	92					0	0	0.008361	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113558931	113558931	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:113558931G>T	uc010ljy.1	-	1	152	c.121C>A	c.(121-123)CCA>ACA	p.P41T		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	41					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CGTCTACTTGGTTGAGGGGAG	0.373			NA											32	63					4.90274e-10	7.07637e-10	0.00623	1	0
TFEC	22797	broad.mit.edu	37	7	115596827	115596827	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:115596827A>T	uc003vhj.1	-	4	472	c.288T>A	c.(286-288)GAT>GAA	p.D96E	TFEC_uc003vhk.1_Missense_Mutation_p.D67E|TFEC_uc003vhl.3_Missense_Mutation_p.D67E|TFEC_uc011kmw.1_Missense_Mutation_p.D186E|TFEC_uc003vhm.1_RNA	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	96	Necessary for transcriptional transactivation.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			CGCTATACACATCCAAAATAC	0.318			NA											14	34					0	0	0.00245	0	0
MET	4233	broad.mit.edu	37	7	116371799	116371799	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:116371799C>T	uc003vij.2	+	3	1465	c.1278C>T	c.(1276-1278)CGC>CGT	p.R426R	MET_uc010lkh.2_Silent_p.R426R|MET_uc011knc.1_Silent_p.R426R|MET_uc011knd.1_Silent_p.R426R|MET_uc011kne.1_Silent_p.R426R|MET_uc011knf.1_Silent_p.R426R|MET_uc011kng.1_Silent_p.R426R|MET_uc011knh.1_Silent_p.R426R|MET_uc011kni.1_Silent_p.R426R|MET_uc011knj.1_5'UTR|MET_uc010lkg.2_Silent_p.R426R|MET_uc011kna.1_Silent_p.R426R|MET_uc011knb.1_Silent_p.R426R	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	426	Extracellular (Potential).|Sema.				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CTTTGCAGCGCGTTGACTTAT	0.433			NA	Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				13	63					0	0	0.001855	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121650942	121650942	+	Silent	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:121650942A>T	uc003vjy.2	+	12	2237	c.1842A>T	c.(1840-1842)CCA>CCT	p.P614P	PTPRZ1_uc003vjz.2_Silent_p.P614P|PTPRZ1_uc011knt.1_Silent_p.P64P	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	614	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						CCGAAAACCCAGAGACAATAA	0.418			NA											23	35					0	0	0.005443	0	0
SLC13A1	6561	broad.mit.edu	37	7	122787356	122787356	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:122787356G>T	uc003vkm.2	-	7	694	c.669C>A	c.(667-669)GGC>GGA	p.G223G	SLC13A1_uc010lks.2_Silent_p.G99G	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	223						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	TGGTTCTCATGCCTGAGTTCT	0.313			NA											6	14					0.00307968	0.00332356	0.00308	1	0
GRM8	2918	broad.mit.edu	37	7	126173364	126173365	+	Missense_Mutation	DNP	CT	CT	AA			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	CT	CT	-	-	CT	CT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:126173364_126173365CT>AA	uc003vlr.2	-	8	2382_2383	c.2071_2072AG>TT	c.(2071-2073)AGT>TTT	p.S691F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.S691F|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	691	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane		p.S691T(1)		lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	AGATGCTGGACTAATGAACTTG	0.5			NA								HNSCC(24;0.065)			43	53					0	0	0.004672	0	0
LEP	3952	broad.mit.edu	37	7	127894638	127894638	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:127894638A>T	uc003vml.2	+	3	383	c.326A>T	c.(325-327)CAC>CTC	p.H109L	LEP_uc003vmm.2_Missense_Mutation_p.H108L	NM_000230	NP_000221	P41159	LEP_HUMAN	leptin precursor	109					adult feeding behavior|energy reserve metabolic process|negative regulation of appetite|placenta development|positive regulation of developmental growth	extracellular space					0						GATCTTCTTCACGTGCTGGCC	0.567			NA											17	40					0	0	0.007413	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192822	132192823	+	Missense_Mutation	DNP	CC	CC	TA			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:132192822_132192823CC>TA	uc003vra.3	-	2	859_860	c.630_631GG>TA	c.(628-633)GCGGAT>GCTAAT	p.D211N	PLXNA4_uc003vrc.2_Missense_Mutation_p.D211N|PLXNA4_uc003vrb.2_Missense_Mutation_p.D211N	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	211	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						AACATGCCATCCGCCTCAGAGT	0.515			NA											30	90					0	0	0.004672	0	0
AKR1B15	441282	broad.mit.edu	37	7	134260294	134260294	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:134260294G>T	uc011kpr.1	+	7	935	c.636G>T	c.(634-636)CAG>CAT	p.Q212H	AKR1B15_uc011kps.1_Missense_Mutation_p.Q184H	NM_001080538	NP_001074007	C9JRZ8	AK1BF_HUMAN	aldo-keto reductase family 1, member B15	212		NADP (By similarity).					oxidoreductase activity			ovary(1)	1						TGACTAACCAGGTAAATTCTA	0.458			NA											42	110					3.28156e-27	5.84496e-27	0.01441	1	0
CALD1	800	broad.mit.edu	37	7	134552502	134552502	+	Silent	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:134552502T>A	uc003vrz.2	+	3	477	c.18T>A	c.(16-18)CGT>CGA	p.R6R	CALD1_uc003vry.2_Silent_p.R6R|CALD1_uc003vsa.2_Silent_p.R6R|CALD1_uc003vsb.2_Silent_p.R6R|CALD1_uc010lmm.2_Silent_p.R6R|CALD1_uc011kpt.1_5'UTR	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	6					cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						ATTTTGAGCGTCGCAGAGAAC	0.433			NA											20	25					0	0	0.005443	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138406718	138406718	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:138406718C>A	uc003vuf.2	-	18	2301	c.2063G>T	c.(2062-2064)AGC>ATC	p.S688I	ATP6V0A4_uc003vug.2_Missense_Mutation_p.S688I|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.S688I	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	688	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						AGGGCTGGAGCTATCACCTTC	0.552			NA											16	28					1.99824e-07	2.56791e-07	0.00499	1	0
SSPO	23145	broad.mit.edu	37	7	149499006	149499006	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:149499006G>T	uc010lpk.2	+	51	7458	c.7458G>T	c.(7456-7458)CGG>CGT	p.R2486R		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2486	LDL-receptor class A 10.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GTGACCTGCGGCCTGACTGCC	0.687			NA											4	33					0.00116845	0.00127269	0.001168	1	0
LRRC61	65999	broad.mit.edu	37	7	150034263	150034263	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:150034263G>A	uc003wgv.2	+	3	987	c.313G>A	c.(313-315)GCA>ACA	p.A105T	LRRC61_uc003wgx.2_Missense_Mutation_p.A105T|LRRC61_uc003wgw.2_Missense_Mutation_p.A105T|LRRC61_uc003wgz.3_Missense_Mutation_p.A105T	NM_023942	NP_076431	Q9BV99	LRC61_HUMAN	leucine rich repeat containing 61	105	LRR 4.										0			OV - Ovarian serous cystadenocarcinoma(82;0.011)			TCTCAATGCCGCAGGCAACCT	0.642			NA											4	32					0	0	0.000602	0	0
GIMAP6	474344	broad.mit.edu	37	7	150324908	150324908	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:150324908C>A	uc003whn.2	-	3	1202	c.778G>T	c.(778-780)GAG>TAG	p.E260*	GIMAP6_uc003whm.2_Nonsense_Mutation_p.E180*	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	260							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCACGTCCTCAGAGCCTTGG	0.522			NA											33	35					2.38352e-08	3.2407e-08	0.004289	1	0
MLL3	58508	broad.mit.edu	37	7	151859569	151859569	+	Missense_Mutation	SNP	G	G	A	rs138747124		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:151859569G>A	uc003wla.2	-	43	11312	c.11093C>T	c.(11092-11094)ACG>ATG	p.T3698M	MLL3_uc003wkz.2_Missense_Mutation_p.T2759M|MLL3_uc003wky.2_Missense_Mutation_p.T1207M	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	3698			T -> S (in a colorectal cancer sample; somatic mutation).		intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding	p.T3698S(1)		large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATTTGCATACGTCTGTTGATT	0.468	Colon(68;14 1149 1884 27689 34759)		NA	N		medulloblastoma								6	251					0	0	0.00308	0	0
RP1L1	94137	broad.mit.edu	37	8	10466664	10466664	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:10466664G>T	uc003wtc.2	-	4	5173	c.4944C>A	c.(4942-4944)GGC>GGA	p.G1648G		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1648					intracellular signal transduction			p.G1648D(1)		ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCGCCTCCTCGCCCAGCTGGC	0.677			NA											8	15					1.58986e-06	1.97386e-06	0.008291	1	0
MTUS1	57509	broad.mit.edu	37	8	17581246	17581246	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:17581246C>T	uc003wxv.2	-	4	2858	c.2384G>A	c.(2383-2385)CGG>CAG	p.R795Q	MTUS1_uc003wxt.2_5'Flank|MTUS1_uc011kyg.1_5'Flank|MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Intron|MTUS1_uc010lsz.2_Missense_Mutation_p.R795Q	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	795						Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		TCCTGTCCTCCGCAGCGCAGG	0.488			NA											8	32					0	0	0.00308	0	0
UNC5D	137970	broad.mit.edu	37	8	35544126	35544127	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:35544126_35544127GG>TT	uc003xjr.1	+	7	1311_1312	c.983_984GG>TT	c.(982-984)CGG>CTT	p.R328L	UNC5D_uc003xjs.1_Missense_Mutation_p.R323L|UNC5D_uc003xjt.1_Missense_Mutation_p.R97L	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	328	Extracellular (Potential).|TSP type-1 2.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GAACATTTGCGGATCCGGGAGT	0.386			NA											9	48					0	0	0.004672	0	0
KCNU1	157855	broad.mit.edu	37	8	36793211	36793211	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:36793211C>G	uc010lvw.2	+	27	3310	c.3223C>G	c.(3223-3225)CCT>GCT	p.P1075A		NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	1075	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		CACAAATTGTCCTCCCACCAT	0.373			NA											13	44					0	0	0.001855	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587132	42587132	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:42587132G>T	uc003xpi.1	+	5	810	c.682G>T	c.(682-684)GTC>TTC	p.V228F		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	228	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GTATTCCTTCGTCCTGAGACG	0.478			NA											28	19					1.32003e-05	1.58188e-05	0.005443	1	0
TOX	9760	broad.mit.edu	37	8	59764193	59764193	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:59764193T>C	uc003xtw.1	-	4	804	c.583A>G	c.(583-585)ATG>GTG	p.M195V		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	195						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				CTTCCTCCCATATTCAAACCA	0.517	Pancreas(161;610 1969 17913 21374 22725)		NA											7	31					0	0	0.004482	0	0
TRIM55	84675	broad.mit.edu	37	8	67066507	67066507	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:67066507G>T	uc003xvv.2	+	9	1688	c.1462G>T	c.(1462-1464)GCA>TCA	p.A488S	TRIM55_uc003xvu.2_Missense_Mutation_p.A488S|TRIM55_uc003xvw.2_Intron|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	488						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			GGCAGCAGCCGCAGCGAGTGA	0.567			NA											16	25					1.67942e-08	2.31018e-08	0.006122	1	0
CSPP1	79848	broad.mit.edu	37	8	68049813	68049813	+	Silent	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:68049813C>G	uc003xxi.2	+	17	2071	c.2040C>G	c.(2038-2040)CTC>CTG	p.L680L	CSPP1_uc003xxg.1_Silent_p.L672L|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Silent_p.L645L|CSPP1_uc003xxk.2_Silent_p.L351L	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	680						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			GTGCTCCTCTCAGGGATGCAA	0.338			NA											9	21					0	0	0.010729	0	0
TRPA1	8989	broad.mit.edu	37	8	72971673	72971673	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:72971673T>A	uc003xza.2	-	8	1120	c.945A>T	c.(943-945)AGA>AGT	p.R315S		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	315	ANK 8.|Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	ACAATGAAGCTCTGAAAAAAC	0.224			NA											26	27					0	0	0.003755	0	0
LRRCC1	85444	broad.mit.edu	37	8	86025304	86025304	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:86025304G>A	uc003ycw.2	+	4	668	c.514G>A	c.(514-516)GGA>AGA	p.G172R	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_Missense_Mutation_p.M1I|LRRCC1_uc003ycx.2_Missense_Mutation_p.G79R|LRRCC1_uc003ycy.2_Missense_Mutation_p.G152R	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	172					cell division|mitosis	centriole|nucleus					0						GGAGAAAGATGGAGACGATAA	0.323			NA											27	32					0	0	0.010818	0	0
CNGB3	54714	broad.mit.edu	37	8	87641256	87641256	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:87641256G>T	uc003ydx.2	-	12	1417	c.1371C>A	c.(1369-1371)GCC>GCA	p.A457A	CNGB3_uc010maj.2_Silent_p.A319A	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	457	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						CATCCATGCAGGCGCGGAAGT	0.443			NA											33	164					7.04047e-22	1.22425e-21	0.005524	1	0
DCAF4L2	138009	broad.mit.edu	37	8	88885853	88885853	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:88885853G>T	uc003ydz.2	-	1	444	c.347C>A	c.(346-348)CCG>CAG	p.P116Q		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	116										ovary(1)	1						GGTTTTGTGCGGGTATACCCG	0.547			NA											13	72					6.31663e-08	8.29942e-08	0.003163	1	0
CALB1	793	broad.mit.edu	37	8	91081419	91081419	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:91081419C>T	uc003yel.1	-	4	460	c.278G>A	c.(277-279)CGA>CAA	p.R93Q	CALB1_uc011lge.1_Missense_Mutation_p.R36Q	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	93						nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			CTGCTGGCATCGGAAGAGCAG	0.398	Melanoma(46;573 1182 27367 39727 48386)		NA											9	46					0	0	0.010729	0	0
UBR5	51366	broad.mit.edu	37	8	103297392	103297392	+	Nonsense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:103297392G>A	uc003ykr.1	-	40	5692	c.5659C>T	c.(5659-5661)CGA>TGA	p.R1887*	UBR5_uc003yks.1_Nonsense_Mutation_p.R1887*	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1887					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			GCTTCTTCTCGCGCAGTCATC	0.403	Ovarian(131;96 1741 5634 7352 27489)		NA											8	70					0	0	0.004482	0	0
ODF1	4956	broad.mit.edu	37	8	103572795	103572795	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:103572795G>T	uc003ykt.2	+	2	544	c.436G>T	c.(436-438)GGA>TGA	p.G146*		NM_024410	NP_077721	Q14990	ODFP1_HUMAN	outer dense fiber of sperm tails 1	146					cell differentiation|multicellular organismal development|spermatogenesis	outer dense fiber	structural molecule activity			ovary(2)	2	all_cancers(14;2.76e-05)|all_epithelial(15;4.54e-08)|Lung NSC(17;4.08e-05)|all_lung(17;9.15e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000125)|STAD - Stomach adenocarcinoma(118;0.0826)			AGTGAAGGATGGAAAGGTATG	0.468			NA											45	69					9.45407e-15	1.50138e-14	0.01441	1	0
DPYS	1807	broad.mit.edu	37	8	105459732	105459732	+	Splice_Site	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:105459732C>A	uc003yly.3	-	3	553	c.424_splice	c.e3-1	p.V142_splice		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase						protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTTCTTTAACCTAAAAGGAAG	0.338			NA											11	21					0.00136819	0.0014875	0.013537	1	0
RSPO2	340419	broad.mit.edu	37	8	108970395	108970395	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:108970395C>G	uc003yms.2	-	5	1187	c.529G>C	c.(529-531)GTT>CTT	p.V177L	RSPO2_uc003ymq.2_Missense_Mutation_p.V110L|RSPO2_uc003ymr.2_Missense_Mutation_p.V113L	NM_178565	NP_848660	Q6UXX9	RSPO2_HUMAN	R-spondin family, member 2 precursor	177	TSP type-1.				Wnt receptor signaling pathway	extracellular region	heparin binding			skin(3)|ovary(2)|pancreas(1)|lung(1)	7			OV - Ovarian serous cystadenocarcinoma(57;1.55e-09)			GGCTTTTTAACAATTTGCCGT	0.443			NA											46	84					0	0	0.01441	0	0
CSMD3	114788	broad.mit.edu	37	8	113694857	113694857	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:113694857G>T	uc003ynu.2	-	16	2650	c.2491C>A	c.(2491-2493)CAT>AAT	p.H831N	CSMD3_uc003yns.2_Missense_Mutation_p.H103N|CSMD3_uc003ynt.2_Missense_Mutation_p.H791N|CSMD3_uc011lhx.1_Missense_Mutation_p.H727N	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	831	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CATTCATTATGTCCAAATGCT	0.358			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			31	62					2.49991e-28	4.50754e-28	0.003271	1	0
RAD21	5885	broad.mit.edu	37	8	117874087	117874087	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:117874087C>A	uc003yod.2	-	4	655	c.367G>T	c.(367-369)GAC>TAC	p.D123Y		NM_006265	NP_006256	O60216	RAD21_HUMAN	RAD21 homolog	123					apoptosis|cell division|chromosome segregation|double-strand break repair|mitotic metaphase/anaphase transition|mitotic prometaphase|protein localization to chromatin|reciprocal meiotic recombination|regulation of transcription from RNA polymerase II promoter	chromosome, centromeric region|cohesin complex|nuclear chromosome|nucleoplasm	protein binding			lung(1)|skin(1)	2	all_cancers(13;1.21e-21)|Lung NSC(37;0.000134)|Ovarian(258;0.0172)					TACTCTAAGTCAGGCAGTGGC	0.368			NA											50	69					3.53049e-34	6.52639e-34	0.01441	1	0
EXT1	2131	broad.mit.edu	37	8	118817013	118817013	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:118817013G>A	uc003yok.1	-	10	2776	c.2003C>T	c.(2002-2004)CCT>CTT	p.P668L		NM_000127	NP_000118	Q16394	EXT1_HUMAN	exostosin 1	668	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction|skeletal system development	Golgi membrane|integral to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)|lung(2)	4	all_cancers(13;2.36e-26)|Lung NSC(37;5.02e-07)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.012)			TTTGATTGGAGGCAATTTTGT	0.478			NA	Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses|Langer-Giedion_syndrome				9	79					0	0	0.006214	0	0
COL14A1	7373	broad.mit.edu	37	8	121381709	121381709	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:121381709G>C	uc003yox.2	+	47	5561	c.5296G>C	c.(5296-5298)GCC>CCC	p.A1766P	COL14A1_uc003yoz.2_Missense_Mutation_p.A731P	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1766	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ATCATGTTCTGCCTATGGTGT	0.507			NA											39	42					0	0	0.01441	0	0
ATAD2	29028	broad.mit.edu	37	8	124361527	124361527	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:124361527C>G	uc003yqh.3	-	14	1912	c.1804G>C	c.(1804-1806)GAG>CAG	p.E602Q	ATAD2_uc011lii.1_Missense_Mutation_p.E393Q|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.E602Q|MIR548D1_hsa-mir-548d-1|MI0003668_5'Flank	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	602					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			ATTCTTACCTCTTTATCAGGC	0.348			NA											10	58					0	0	0.001855	0	0
TMEM71	137835	broad.mit.edu	37	8	133740100	133740100	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:133740100A>G	uc003ytp.2	-	6	846	c.617T>C	c.(616-618)CTT>CCT	p.L206P	TMEM71_uc003ytm.1_Missense_Mutation_p.L28P|TMEM71_uc003ytn.2_Missense_Mutation_p.L188P|TMEM71_uc003yto.2_Intron	NM_144649	NP_653250	Q6P5X7	TMM71_HUMAN	transmembrane protein 71 isoform 1	207						integral to membrane				ovary(2)	2	all_neural(3;2.72e-06)|Medulloblastoma(3;7.08e-05)|Ovarian(258;0.00438)|Esophageal squamous(12;0.00507)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;4.46e-05)			CTGGGACTGAAGAGACAAGCT	0.463			NA											46	87					0	0	0.01441	0	0
KCNK9	51305	broad.mit.edu	37	8	140630539	140630539	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:140630539C>T	uc003yvf.1	-	2	1151	c.1087G>A	c.(1087-1089)GAC>AAC	p.D363N	KCNK9_uc003yvg.1_Missense_Mutation_p.D363N|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	363	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			CTCTGGTGGTCGGTAAAGCTG	0.468			NA											25	113					0	0	0.010818	0	0
CYP11B1	1584	broad.mit.edu	37	8	143961219	143961219	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:143961219C>A	uc003yxi.2	-	1	18	c.11G>T	c.(10-12)AGG>ATG	p.R4M	CYP11B1_uc003yxj.2_Missense_Mutation_p.R4M|CYP11B1_uc010mey.2_Missense_Mutation_p.R4M	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	4					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	TGCCTTTGCCCTGAGTGCCAT	0.617			NA							Familial_Hyperaldosteronism_type_I				94	156					1.6696e-61	3.1663e-61	0.01441	1	0
DMRT3	58524	broad.mit.edu	37	9	990852	990852	+	Silent	SNP	G	G	A	rs144093358		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:990852G>A	uc003zgw.1	+	2	1304	c.1266G>A	c.(1264-1266)TCG>TCA	p.S422S		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	422					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		TCAGAAGCTCGCCCGTCCTTC	0.557			NA											5	32					0	0	0.001984	0	0
PTPRD	5789	broad.mit.edu	37	9	8486072	8486072	+	Missense_Mutation	SNP	T	T	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:8486072T>A	uc003zkk.2	-	27	3456	c.2745A>T	c.(2743-2745)GAA>GAT	p.E915D	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.E906D|PTPRD_uc003zkm.2_Missense_Mutation_p.E902D|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	915	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TTGGTACTTCTTCTGGAATGG	0.498			NA								TSP Lung(15;0.13)			6	31					0	0	0.001984	0	0
PTPRD	5789	broad.mit.edu	37	9	8517893	8517893	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:8517893C>A	uc003zkk.2	-	20	2209	c.1498G>T	c.(1498-1500)GAT>TAT	p.D500Y	PTPRD_uc003zkp.2_Missense_Mutation_p.D500Y|PTPRD_uc003zkq.2_Missense_Mutation_p.D500Y|PTPRD_uc003zkr.2_Missense_Mutation_p.D494Y|PTPRD_uc003zks.2_Missense_Mutation_p.D490Y|PTPRD_uc003zkl.2_Missense_Mutation_p.D500Y|PTPRD_uc003zkm.2_Missense_Mutation_p.D487Y|PTPRD_uc003zkn.2_Missense_Mutation_p.D500Y|PTPRD_uc003zko.2_Missense_Mutation_p.D497Y	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	500	Fibronectin type-III 2.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AGGGGACCATCTCCAATTGAG	0.463			NA								TSP Lung(15;0.13)			20	43					6.21321e-17	1.02562e-16	0.00278	1	0
CNTLN	54875	broad.mit.edu	37	9	17484328	17484328	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:17484328G>A	uc003zmz.2	+	24	3914	c.3888G>A	c.(3886-3888)GTG>GTA	p.V1296V	CNTLN_uc003zmy.2_Silent_p.V1297V|CNTLN_uc010mio.2_Silent_p.V976V	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	1297	Potential.					centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		ATGTCCATGTGGTAAGGCGAC	0.383			NA											25	34					0	0	0.005443	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18504846	18504846	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:18504846C>G	uc003zne.3	+	2	210	c.83C>G	c.(82-84)TCC>TGC	p.S28C	ADAMTSL1_uc003znb.2_Missense_Mutation_p.S28C|ADAMTSL1_uc003znc.3_Missense_Mutation_p.S28C	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	28						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		ACCGCACGCTCCGAGGAGGAC	0.582			NA											24	49					0	0	0.00632	0	0
SLC24A2	25769	broad.mit.edu	37	9	19576964	19576964	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:19576964C>A	uc003zoa.1	-	5	1248	c.1186G>T	c.(1186-1188)GTG>TTG	p.V396L	SLC24A2_uc003zob.1_Missense_Mutation_p.V379L	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	396	Cytoplasmic (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		TTCTCATCCACATGACATTTC	0.517			NA											30	68					6.97489e-18	1.1678e-17	0.004878	1	0
TEK	7010	broad.mit.edu	37	9	27202926	27202926	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:27202926G>A	uc003zqi.3	+	13	2460	c.2018G>A	c.(2017-2019)CGT>CAT	p.R673H	TEK_uc011lno.1_Missense_Mutation_p.R630H|TEK_uc011lnp.1_Missense_Mutation_p.R526H|TEK_uc003zqj.1_Missense_Mutation_p.R607H	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	673	Extracellular (Potential).|Fibronectin type-III 3.				angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		ATTACTATCCGTTACAAGGTT	0.413			NA											7	57					0	0	0.001984	0	0
LINGO2	158038	broad.mit.edu	37	9	27949151	27949151	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:27949151G>T	uc003zqu.1	-	2	1713	c.1519C>A	c.(1519-1521)CGT>AGT	p.R507S	LINGO2_uc010mjf.1_Missense_Mutation_p.R507S|LINGO2_uc003zqv.1_Missense_Mutation_p.R507S	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	507	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		TAAAGAAAACGATCTGAAGCG	0.463			NA											18	37					1.50039e-11	2.26023e-11	0.012319	1	0
TAF1L	138474	broad.mit.edu	37	9	32631704	32631704	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:32631704T>C	uc003zrg.1	-	1	3964	c.3874A>G	c.(3874-3876)ATG>GTG	p.M1292V	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1292					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TTAGTCCTCATATGTCCAATG	0.463			NA											31	58					0	0	0.003271	0	0
KIAA1539	80256	broad.mit.edu	37	9	35106295	35106295	+	Missense_Mutation	SNP	A	A	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:35106295A>C	uc003zwl.2	-	6	1497	c.1172T>G	c.(1171-1173)GTC>GGC	p.V391G	KIAA1539_uc003zwm.2_Missense_Mutation_p.V391G|KIAA1539_uc003zwn.2_Missense_Mutation_p.V86G|KIAA1539_uc003zwo.2_Missense_Mutation_p.V391G|KIAA1539_uc003zwp.1_Missense_Mutation_p.V391G|KIAA1539_uc010mkk.1_RNA	NM_025182	NP_079458	Q7L5A3	K1539_HUMAN	hypothetical protein LOC80256	391						nucleus				ovary(2)	2	all_epithelial(49;0.217)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AAAGAATGTGACAGTGACAGG	0.532			NA											12	68					0	0	0.001855	0	0
GNE	10020	broad.mit.edu	37	9	36217419	36217419	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:36217419G>A	uc010mlh.2	-	12	2327	c.2112C>T	c.(2110-2112)CCC>CCT	p.P704P	CLTA_uc003zzf.1_Intron|GNE_uc010mlg.2_Silent_p.P630P|GNE_uc011lpl.1_Silent_p.P594P|GNE_uc010mli.2_Silent_p.P735P|GNE_uc010mlj.2_Silent_p.P699P	NM_005476	NP_005467	Q9Y223	GLCNE_HUMAN	UDP-N-acetylglucosamine-2-epimerase/N-	704	UDP-N-acetylglucosamine 2-epimerase.|N-acetylmannosamine kinase.				cell adhesion|lipopolysaccharide biosynthetic process|N-acetylneuraminate metabolic process|UDP-N-acetylglucosamine metabolic process		ATP binding|N-acylmannosamine kinase activity|UDP-N-acetylglucosamine 2-epimerase activity				0			STAD - Stomach adenocarcinoma(86;0.228)			CCAGCAGGGCGGGGTCAACCA	0.557	GBM(184;106 2118 20004 35750 50727)		NA											6	22					0	0	0.00308	0	0
FAM75C1	441452	broad.mit.edu	37	9	90535546	90535546	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:90535546C>A	uc010mqi.2	+	4	753	c.724C>A	c.(724-726)CGG>AGG	p.R242R	FAM75C1_uc004apq.3_Silent_p.R225R	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						TCCTCCCCTGCGGGACTCCAC	0.592			NA											49	132					9.53978e-28	1.70958e-27	0.01441	1	0
C9orf89	84270	broad.mit.edu	37	9	95872911	95872911	+	Missense_Mutation	SNP	G	G	T	rs150588284	byFrequency	TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:95872911G>T	uc004atd.2	+	3	390	c.212G>T	c.(211-213)CGG>CTG	p.R71L	C9orf89_uc004ate.2_RNA|C9orf89_uc004atf.2_RNA	NM_032310	NP_115686	Q96LW7	BINCA_HUMAN	chromosome 9 open reading frame 89	71	CARD.				negative regulation of I-kappaB kinase/NF-kappaB cascade	cytosol|nucleus	CARD domain binding				0						CACCTGCAGCGGAGCGGTGAG	0.512			NA											18	56					8.34094e-07	1.04217e-06	0.008871	1	0
PTCH1	5727	broad.mit.edu	37	9	98241428	98241428	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:98241428C>A	uc004avk.3	-	8	1257	c.1069G>T	c.(1069-1071)GCC>TCC	p.A357S	PTCH1_uc010mro.2_Missense_Mutation_p.A206S|PTCH1_uc010mrp.2_Missense_Mutation_p.A206S|PTCH1_uc010mrq.2_Missense_Mutation_p.A206S|PTCH1_uc004avl.3_Missense_Mutation_p.A206S|PTCH1_uc010mrr.2_Missense_Mutation_p.A291S|PTCH1_uc004avm.3_Missense_Mutation_p.A356S|PTCH1_uc010mrs.1_Missense_Mutation_p.A77S	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	357	Extracellular (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				AGGGCATGGGCGCTGCAGCAC	0.537			NA							Basal_Cell_Nevus_syndrome				12	56					3.45872e-05	4.06174e-05	0.004007	1	0
C9orf102	375748	broad.mit.edu	37	9	98669551	98669551	+	Silent	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:98669551C>T	uc004avt.3	+	4	1207	c.819C>T	c.(817-819)AAC>AAT	p.N273N	C9orf102_uc010mrx.1_RNA|C9orf102_uc011lum.1_Intron|C9orf102_uc010mry.1_Intron|C9orf102_uc010mrz.2_Silent_p.N84N	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	273	Helicase ATP-binding.				DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				ATGAACTTAACAGGTAATGGG	0.299			NA											13	26					0	0	0.004007	0	0
KIAA1529	57653	broad.mit.edu	37	9	100092615	100092615	+	Nonsense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:100092615A>T	uc011lut.1	+	30	3162	c.2389A>T	c.(2389-2391)AAA>TAA	p.K797*	KIAA1529_uc004axe.1_Nonsense_Mutation_p.K797*|KIAA1529_uc004axg.1_Nonsense_Mutation_p.K658*|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_5'UTR|KIAA1529_uc011lus.1_Nonsense_Mutation_p.K615*|KIAA1529_uc010msm.1_RNA|KIAA1529_uc004axf.2_Nonsense_Mutation_p.K658*|KIAA1529_uc011luv.1_Nonsense_Mutation_p.K655*	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				AGCACATGAAAAACCCTCCCA	0.463			NA											7	17					0	0	0.00308	0	0
PPP3R2	5535	broad.mit.edu	37	9	104357194	104357194	+	Missense_Mutation	SNP	C	C	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:104357194C>T	uc004bbr.2	-	1	90	c.19G>A	c.(19-21)GAG>AAG	p.E7K	GRIN3A_uc004bbp.1_Intron|GRIN3A_uc004bbq.1_Intron|PPP3R2_uc010mtf.1_RNA	NM_147180	NP_671709	Q96LZ3	CANB2_HUMAN	protein phosphatase 3 regulatory subunit B, beta	4							calcium ion binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)			Cyclosporine(DB00091)	TAACTGGCCTCGTTTCCCATT	0.592			NA											14	30					0	0	0.006122	0	0
OR13F1	138805	broad.mit.edu	37	9	107266778	107266778	+	Missense_Mutation	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:107266778T>C	uc011lvm.1	+	1	235	c.235T>C	c.(235-237)TCT>CCT	p.S79P		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	79	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						TTCTGCCCTCTCTCCAATGCT	0.507			NA											15	64					0	0	0.006122	0	0
SVEP1	79987	broad.mit.edu	37	9	113173805	113173805	+	Missense_Mutation	SNP	A	A	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:113173805A>T	uc010mtz.2	-	37	6523	c.6186T>A	c.(6184-6186)AAT>AAA	p.N2062K	SVEP1_uc010mty.2_5'UTR	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2062	Sushi 11.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TGCCCTGGGCATTGCAGAGAA	0.502			NA											11	20					0	0	0.010729	0	0
ROD1	9991	broad.mit.edu	37	9	114989795	114989795	+	Silent	SNP	A	A	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:114989795A>C	uc004bfw.2	-	13	1531	c.1344T>G	c.(1342-1344)ACT>ACG	p.T448T	ROD1_uc004bfv.2_Silent_p.T454T|ROD1_uc004bfx.2_Silent_p.T451T|ROD1_uc011lwu.1_Silent_p.T420T|ROD1_uc004bfy.2_Silent_p.T353T|ROD1_uc004bfz.2_Silent_p.T420T	NM_005156	NP_005147	O95758	ROD1_HUMAN	ROD1 regulator of differentiation 1 isoform 1	448					anatomical structure morphogenesis|mRNA processing	nucleus	nucleotide binding|RNA binding			skin(1)	1						TGAAATCCTTAGTCAGACCTT	0.448			NA											10	55					0	0	0.008291	0	0
TNFSF15	9966	broad.mit.edu	37	9	117553073	117553073	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:117553073G>A	uc004bjh.2	-	4	531	c.415C>T	c.(415-417)CTG>TTG	p.L139L	TNFSF15_uc004bjg.2_Silent_p.L80L	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	139	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						GGGATCAGCAGGAATTTGTTG	0.493			NA											12	21					0	0	0.004007	0	0
ASTN2	23245	broad.mit.edu	37	9	119737613	119737613	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:119737613C>A	uc004bjs.1	-	10	1864	c.1763G>T	c.(1762-1764)AGC>ATC	p.S588I	ASTN2_uc004bjr.1_Splice_Site_p.S584_splice|ASTN2_uc004bjt.1_Missense_Mutation_p.S537I	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	588	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						TTGGCCCAAGCTGAAAGTAGA	0.557			NA											13	17					2.31682e-05	2.72622e-05	0.003163	1	0
OR5C1	392391	broad.mit.edu	37	9	125552027	125552027	+	Silent	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:125552027G>A	uc011lzd.1	+	1	816	c.816G>A	c.(814-816)CTG>CTA	p.L272L		NM_001001923	NP_001001923	Q8NGR4	OR5C1_HUMAN	olfactory receptor, family 5, subfamily C,	272	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						GCTATGCCCTGGACACTGACA	0.582			NA											17	45					0	0	0.006122	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136291323	136291323	+	Missense_Mutation	SNP	G	G	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:136291323G>A	uc004cdv.3	+	6	988	c.544G>A	c.(544-546)GAC>AAC	p.D182N	ADAMTS13_uc004cdp.3_5'UTR|ADAMTS13_uc004cdt.1_Missense_Mutation_p.D182N|ADAMTS13_uc004cdu.1_Missense_Mutation_p.D182N|ADAMTS13_uc004cdw.3_Missense_Mutation_p.D182N|ADAMTS13_uc004cdx.3_Missense_Mutation_p.D182N|ADAMTS13_uc004cdy.1_5'Flank|ADAMTS13_uc004cdq.1_Missense_Mutation_p.D182N|ADAMTS13_uc004cds.1_Silent_p.L11L|ADAMTS13_uc004cdr.1_RNA	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	182	Peptidase M12B.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		ACCGAGGTTTGACCTGGAGTT	0.637			NA											21	43					0	0	0.003954	0	0
COL5A1	1289	broad.mit.edu	37	9	137645731	137645731	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:137645731G>T	uc004cfe.2	+	15	2137	c.1755G>T	c.(1753-1755)CCG>CCT	p.P585P		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	585	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGGGCGAGCCGGGAGACGTGG	0.652			NA											18	34					1.64113e-05	1.95468e-05	0.010504	1	0
LCN1	3933	broad.mit.edu	37	9	138416989	138416989	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:138416989C>A	uc004cfz.1	+	6	575	c.517C>A	c.(517-519)CCA>ACA	p.P173T	LCN1_uc004cga.1_Missense_Mutation_p.P173T	NM_002297	NP_002288	P31025	LCN1_HUMAN	lipocalin 1 precursor	173					proteolysis|response to stimulus|sensory perception of taste	extracellular region	cysteine-type endopeptidase inhibitor activity|transporter activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.54e-08)|Epithelial(140;5.25e-08)|all cancers(34;9.27e-07)|READ - Rectum adenocarcinoma(205;0.155)		AACCTGCTCTCCAGGGAGCGA	0.577			NA											15	38					2.94398e-08	3.92978e-08	0.007413	1	0
GLT6D1	360203	broad.mit.edu	37	9	138516186	138516186	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:138516186G>T	uc010nbd.1	-	5	842	c.588C>A	c.(586-588)GCC>GCA	p.A196A		NM_182974	NP_892019	Q7Z4J2	GL6D1_HUMAN	glycosyltransferase 6 domain containing 1	196	Lumenal (Potential).				carbohydrate metabolic process	integral to membrane	transferase activity, transferring hexosyl groups			ovary(1)	1		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;4.3e-07)|Epithelial(140;1.58e-06)|all cancers(34;5.36e-05)		AATACCACCAGGCGTGGAGCT	0.557			NA											9	16					6.40141e-05	7.41349e-05	0.010729	1	0
MAN1B1	11253	broad.mit.edu	37	9	139990728	139990728	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:139990728C>A	uc004cld.2	+	4	540	c.505C>A	c.(505-507)CAG>AAG	p.Q169K	MAN1B1_uc004clc.2_Missense_Mutation_p.Q70K|MAN1B1_uc011meo.1_Missense_Mutation_p.Q70K|MAN1B1_uc011mep.1_Missense_Mutation_p.Q169K|MAN1B1_uc010ncc.2_RNA	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	169	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		ACCTCACCTGCAGATTAGACC	0.572			NA											10	23					6.42651e-13	9.85847e-13	0.010729	1	0
GRIN1	2902	broad.mit.edu	37	9	140040201	140040201	+	Silent	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr9:140040201C>A	uc004clk.2	+	3	747	c.417C>A	c.(415-417)CGC>CGA	p.R139R	GRIN1_uc004cli.1_5'UTR|GRIN1_uc004clj.1_Silent_p.R136R|GRIN1_uc004cll.2_Silent_p.R139R|GRIN1_uc004clm.2_Silent_p.R139R|GRIN1_uc004cln.2_Silent_p.R136R|GRIN1_uc004clo.2_Silent_p.R136R	NM_007327	NP_015566	Q05586	NMDZ1_HUMAN	NMDA receptor 1 isoform NR1-3 precursor	139	Extracellular (Potential).				ionotropic glutamate receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|regulation of excitatory postsynaptic membrane potential|response to ethanol|visual learning	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane|synaptic vesicle|synaptosome	calcium ion binding|calmodulin binding|extracellular-glutamate-gated ion channel activity|glutamate binding|glycine binding			skin(1)	1	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;6.87e-05)|Epithelial(140;0.00095)	L-Glutamic Acid(DB00142)|Orphenadrine(DB01173)	GCTTCCTGCGCACCGTGCCGC	0.682	NSCLC(113;717 1653 2089 20474 37618)		NA											8	40					1.49906e-05	1.7891e-05	0.00245	1	0
MAGEB18	286514	broad.mit.edu	37	X	26157186	26157186	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:26157186G>T	uc004dbq.1	+	2	271	c.84G>T	c.(82-84)ACG>ACT	p.T28T		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	28							protein binding			central_nervous_system(1)	1						TGGGAGCTACGCAGGCCACTG	0.557			NA											9	5					3.09899e-07	3.96508e-07	0.004482	1	0
DMD	1756	broad.mit.edu	37	X	32466621	32466621	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:32466621G>C	uc004dda.1	-	27	3982	c.3738C>G	c.(3736-3738)AAC>AAG	p.N1246K	DMD_uc004dcz.2_Missense_Mutation_p.N1123K|DMD_uc004dcy.1_Missense_Mutation_p.N1242K|DMD_uc004ddb.1_Missense_Mutation_p.N1238K|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1246	Spectrin 8.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				GCCACTGGTAGTTGGTGGTTA	0.413			NA											11	8					0	0	0.001855	0	0
FTSJ1	24140	broad.mit.edu	37	X	48336506	48336506	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:48336506G>T	uc004djo.1	+	2	394	c.71G>T	c.(70-72)CGC>CTC	p.R24L	FTSJ1_uc004djl.2_Missense_Mutation_p.R24L|FTSJ1_uc004djm.2_Missense_Mutation_p.R24L|FTSJ1_uc004djn.1_Missense_Mutation_p.R24L|FTSJ1_uc004djp.1_Missense_Mutation_p.R24L|FTSJ1_uc011mlw.1_Intron	NM_012280	NP_036412	Q9UET6	RRMJ1_HUMAN	FtsJ homolog 1 isoform a	24					RNA methylation|rRNA processing		methyltransferase activity|nucleic acid binding				0						TGGCGTGCTCGCAGCGCCTTC	0.582			NA											6	4					2.7689e-08	3.73865e-08	0.001984	1	0
PFKFB1	5207	broad.mit.edu	37	X	54978518	54978518	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:54978518G>T	uc004dty.1	-	8	737	c.666C>A	c.(664-666)GAC>GAA	p.D222E	PFKFB1_uc010nkd.1_Intron|PFKFB1_uc011mol.1_Missense_Mutation_p.D157E	NM_002625	NP_002616	P16118	F261_HUMAN	6-phosphofructo-2-kinase/fructose-2,	222	6-phosphofructo-2-kinase.				energy reserve metabolic process|fructose 2,6-bisphosphate metabolic process|gluconeogenesis|glycolysis|intracellular protein kinase cascade	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(1)	1						GTGTGCCCACGTCGAAGATCT	0.567			NA											8	7					6.40141e-05	7.41349e-05	0.010729	1	0
DGAT2L6	347516	broad.mit.edu	37	X	69421846	69421846	+	Nonsense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:69421846C>A	uc004dxx.1	+	5	676	c.579C>A	c.(577-579)TGC>TGA	p.C193*		NM_198512	NP_940914	Q6ZPD8	DG2L6_HUMAN	diacylglycerol O-acyltransferase 2-like 6	193					lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)	1						CTCTCTTGTGCCGACCAGGAG	0.537			NA											4	8					1.23904e-05	1.48786e-05	0.000602	1	0
TEX11	56159	broad.mit.edu	37	X	69811632	69811632	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:69811632G>T	uc004dyl.2	-	26	2316	c.2154C>A	c.(2152-2154)TGC>TGA	p.C718*	TEX11_uc004dyk.2_Nonsense_Mutation_p.C393*|TEX11_uc004dym.2_Nonsense_Mutation_p.C703*	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	718							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					GGATGTCATTGCATGTCTGGA	0.383			NA											9	5					2.80697e-09	3.98278e-09	0.010729	1	0
SLC7A3	84889	broad.mit.edu	37	X	70148048	70148048	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:70148048C>A	uc004dyn.2	-	5	925	c.767G>T	c.(766-768)GGA>GTA	p.G256V	SLC7A3_uc004dyo.2_Missense_Mutation_p.G256V	NM_032803	NP_116192	Q8WY07	CTR3_HUMAN	solute carrier family 7 (cationic amino acid	256	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to membrane|plasma membrane				ovary(1)|kidney(1)	2	Renal(35;0.156)				L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	GGTCGCTGCTCCACGGAGAAT	0.512			NA											12	7					0.000308642	0.000346483	0.003163	1	0
APOOL	139322	broad.mit.edu	37	X	84329295	84329295	+	Nonsense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:84329295G>T	uc004eem.2	+	8	630	c.616G>T	c.(616-618)GAA>TAA	p.E206*	APOOL_uc010nmp.2_Intron	NM_198450	NP_940852	Q6UXV4	APOOL_HUMAN	apolipoprotein O-like precursor	206						extracellular region					0						ATCCTCTTCCGAAATAGAAGT	0.393			NA											21	7					2.89027e-11	4.28784e-11	0.014323	1	0
ZNF711	7552	broad.mit.edu	37	X	84523327	84523327	+	Missense_Mutation	SNP	A	A	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:84523327A>G	uc004eeo.2	+	7	1291	c.944A>G	c.(943-945)TAT>TGT	p.Y315C	ZNF711_uc004eep.2_Missense_Mutation_p.Y315C|ZNF711_uc004eeq.2_Missense_Mutation_p.Y361C|ZNF711_uc011mqy.1_5'UTR	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	315					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TCCCGAAGGTATGAAGATTGT	0.303			NA											3	11					0	0	0.000602	0	0
KLHL4	56062	broad.mit.edu	37	X	86887407	86887407	+	Missense_Mutation	SNP	C	C	G			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:86887407C>G	uc004efb.2	+	7	1704	c.1522C>G	c.(1522-1524)CCC>GCC	p.P508A	KLHL4_uc004efa.2_Missense_Mutation_p.P508A	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	508	Kelch 2.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TGTGATGCCTCCCATGTCAAC	0.368			NA											14	6					0	0	0.007413	0	0
GPC3	2719	broad.mit.edu	37	X	132887815	132887815	+	Silent	SNP	T	T	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:132887815T>C	uc004exe.1	-	3	916	c.726A>G	c.(724-726)ACA>ACG	p.T242T	GPC3_uc004exd.1_Silent_p.T114T|GPC3_uc010nrn.1_Silent_p.T242T|GPC3_uc011mvh.1_Silent_p.T226T|GPC3_uc010nro.1_Silent_p.T188T|GPC3_uc010nrp.1_Silent_p.T114T	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	242						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					GGTGATCAGTTGTGTTGATCA	0.473			NA	T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				62	13					0	0	0.01441	0	0
CXorf66	347487	broad.mit.edu	37	X	139038483	139038483	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:139038483G>T	uc004fbb.2	-	3	680	c.658C>A	c.(658-660)CAT>AAT	p.H220N		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	220	Cytoplasmic (Potential).					integral to membrane					0						TTTTGTGGATGAGATGAATAA	0.438			NA											86	30					6.84326e-50	1.2853e-49	0.01441	1	0
PNMA3	29944	broad.mit.edu	37	X	152225685	152225685	+	Silent	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:152225685G>T	uc004fhc.2	+	2	609	c.273G>T	c.(271-273)GTG>GTT	p.V91V	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	91					apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					cctgggaagtgattgtaaaac	0			NA											35	11					2.2871e-25	4.06133e-25	0.007835	1	0
ATP2B3	492	broad.mit.edu	37	X	152807167	152807167	+	Missense_Mutation	SNP	G	G	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:152807167G>T	uc004fht.1	+	3	573	c.447G>T	c.(445-447)GAG>GAT	p.E149D	ATP2B3_uc004fhs.1_Missense_Mutation_p.E149D	NM_001001344	NP_001001344	Q16720	AT2B3_HUMAN	plasma membrane calcium ATPase 3 isoform 3b	149	Extracellular (Potential).				ATP biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ATGAGGGCGAGGCCGAAGCTG	0.612			NA											39	15					6.5261e-18	1.09579e-17	0.00874	1	0
AVPR2	554	broad.mit.edu	37	X	153172069	153172069	+	Missense_Mutation	SNP	G	G	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:153172069G>C	uc004fjh.3	+	3	1074	c.1003G>C	c.(1003-1005)GAG>CAG	p.E335Q	AVPR2_uc004fjg.3_Missense_Mutation_p.E124Q|AVPR2_uc004fji.2_3'UTR	NM_000054	NP_000045	P30518	V2R_HUMAN	arginine vasopressin receptor 2 isoform 1	335	Cytoplasmic (Potential).				activation of adenylate cyclase activity|excretion|G-protein signaling, coupled to cAMP nucleotide second messenger|hemostasis|positive regulation of gene expression|transmembrane transport|water transport	endoplasmic reticulum|endosome|Golgi apparatus|integral to plasma membrane	vasopressin receptor activity			breast(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Conivaptan(DB00872)|Terlipressin(DB02638)|Vasopressin(DB00067)	CGTGTCCTCAGAGCTGCGAAG	0.632			NA											3	71					0	0	0.000602	0	0
KDM5D	8284	broad.mit.edu	37	Y	21883061	21883061	+	Missense_Mutation	SNP	C	C	A			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrY:21883061C>A	uc004fug.2	-	12	1796	c.1508G>T	c.(1507-1509)TGG>TTG	p.W503L	KDM5D_uc011naz.1_Missense_Mutation_p.W534L|KDM5D_uc010nwy.2_Missense_Mutation_p.W446L|KDM5D_uc011nba.1_Missense_Mutation_p.W503L|KDM5D_uc004fuh.2_Missense_Mutation_p.W458L	NM_004653	NP_004644	Q9BY66	KDM5D_HUMAN	jumonji, AT rich interactive domain 1D isoform	503	JmjC.				chromatin modification|spermatogenesis	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1					Vitamin C(DB00126)	CTCAATATGCCAACAAAATGC	0.473			NA											15	10					1.52009e-12	2.31972e-12	0.003163	1	0
MEX3A	92312	broad.mit.edu	37	1	156046687	156046689	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	GAG	GAG	-	-	GAG	GAG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:156046687_156046689delGAG	uc001fnd.3	-	2	1239_1241	c.1239_1241delCTC	c.(1237-1242)TCCTCT>TCT	p.413_414SS>S		NM_001093725	NP_001087194	A1L020	MEX3A_HUMAN	MEX3A protein	413_414	Poly-Ser.					cytoplasmic mRNA processing body|nucleus	RNA binding|zinc ion binding				0	Hepatocellular(266;0.158)|all_neural(408;0.195)					CTTGGCggaagaggaggaggagg	0.64			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
ANKRD45	339416	broad.mit.edu	37	1	173616018	173616019	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	GA	GA	-	-	GA	GA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:173616018_173616019delGA	uc001gja.1	-	3	523_524	c.462_463delTC	c.(460-465)TCTCAGfs	p.S154fs		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	170_171											0						CACTCAGTCTGAGAATATCTAG	0.446			NA											106	155	---	---	---	---	NA	NA	NA	NA	NA
NFASC	23114	broad.mit.edu	37	1	204913465	204913466	+	Frame_Shift_Ins	INS	-	-	T			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr1:204913465_204913466insT	uc001hbj.2	+	3	350_351	c.22_23insT	c.(22-24)CCCfs	p.P8fs	NFASC_uc001hbh.2_Frame_Shift_Ins_p.P8fs|NFASC_uc010pqz.1_Frame_Shift_Ins_p.P8fs|NFASC_uc010pra.1_Frame_Shift_Ins_p.P8fs|NFASC_uc001hbi.2_Frame_Shift_Ins_p.P8fs|NFASC_uc009xbg.1_Frame_Shift_Ins_p.P81fs|NFASC_uc010prb.1_Frame_Shift_Ins_p.P8fs|NFASC_uc010prc.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	8					axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GCCACCGCCGCCCTGGGTCCAT	0.619			NA											14	28	---	---	---	---	NA	NA	NA	NA	NA
OR5L2	26338	broad.mit.edu	37	11	55594697	55594697	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:55594697delG	uc001nhy.1	+	1	3	c.3delG	c.(1-3)ATGfs	p.M1fs		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TTGGAGACATGGGCAAGGAAA	0.398			NA								HNSCC(27;0.073)			49	118	---	---	---	---	NA	NA	NA	NA	NA
MS4A6A	64231	broad.mit.edu	37	11	59943069	59943069	+	Frame_Shift_Del	DEL	C	C	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr11:59943069delC	uc001nor.2	-	5	593	c.355delG	c.(355-357)GTTfs	p.V119fs	MS4A6A_uc001noq.2_Frame_Shift_Del_p.V119fs|MS4A6A_uc001nos.3_Frame_Shift_Del_p.V147fs|MS4A6A_uc009ymv.2_Frame_Shift_Del_p.V119fs|MS4A6A_uc001not.2_Frame_Shift_Del_p.V119fs|MS4A6A_uc010rla.1_Frame_Shift_Del_p.V147fs|MS4A6A_uc010rlb.1_Frame_Shift_Del_p.V74fs	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	119	Helical; (Potential).					integral to membrane	receptor activity				0						ATGCTTCCAACCAGGCTGCTA	0.443			NA											31	53	---	---	---	---	NA	NA	NA	NA	NA
PCDH17	27253	broad.mit.edu	37	13	58299356	58299356	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr13:58299356delG	uc001vhq.1	+	4	4300	c.3408delG	c.(3406-3408)GAGfs	p.E1136fs	PCDH17_uc010aec.1_Frame_Shift_Del_p.E1135fs|PCDH17_uc001vhr.1_Frame_Shift_Del_p.E225fs	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	1136	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		TGGATGCAGAGGAAGTTGTGA	0.493	Melanoma(72;952 1291 1619 12849 33676)		NA											40	296	---	---	---	---	NA	NA	NA	NA	NA
SERPINB7	8710	broad.mit.edu	37	18	61471695	61471695	+	Frame_Shift_Del	DEL	C	C	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr18:61471695delC	uc002ljl.2	+	8	1065	c.969delC	c.(967-969)CACfs	p.H323fs	SERPINB7_uc002ljm.2_Frame_Shift_Del_p.H323fs|SERPINB7_uc010xet.1_Frame_Shift_Del_p.H306fs|SERPINB7_uc010dqg.2_Frame_Shift_Del_p.H323fs	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	323					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				GGATGATGCACAAATCTTACA	0.468			NA											12	8	---	---	---	---	NA	NA	NA	NA	NA
DNMT1	1786	broad.mit.edu	37	19	10254626	10254626	+	Frame_Shift_Del	DEL	C	C	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:10254626delC	uc002mng.2	-	28	3064	c.2884delG	c.(2884-2886)GAGfs	p.E962fs	DNMT1_uc002mnf.2_5'UTR|DNMT1_uc010xlc.1_Frame_Shift_Del_p.E978fs|DNMT1_uc002mnh.2_Frame_Shift_Del_p.E857fs|DNMT1_uc010xld.1_Frame_Shift_Del_p.E962fs	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	962					chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	TCCACGGGCTCCTTCCGTGGG	0.567			NA											14	183	---	---	---	---	NA	NA	NA	NA	NA
CLEC17A	388512	broad.mit.edu	37	19	14694175	14694176	+	In_Frame_Ins	INS	-	-	GGA	rs138602183		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:14694175_14694176insGGA	uc010dzn.1	+	2	127_128	c.50_51insGGA	c.(49-51)ATG>ATGGAG	p.22_23insE	CLEC17A_uc002mzh.1_In_Frame_Ins_p.22_23insE|CLEC17A_uc010xnt.1_RNA|CLEC17A_uc010xnu.1_In_Frame_Ins_p.22_23insE|CLEC17A_uc010dzo.1_In_Frame_Ins_p.22_23insE			Q6ZS10	CL17A_HUMAN	SubName: Full=CLEC17A protein;	22_23	Cytoplasmic (Potential).					cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity				0						GAAGGGACCATGGAGGAGGAGG	0.579			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
LGALS4	3960	broad.mit.edu	37	19	39299514	39299514	+	Frame_Shift_Del	DEL	C	C	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:39299514delC	uc002ojg.2	-	3	423	c.209delG	c.(208-210)GGCfs	p.G70fs	LGALS4_uc010xuj.1_Frame_Shift_Del_p.G70fs	NM_006149	NP_006140	P56470	LEG4_HUMAN	galectin-4	70	Galectin 1.				cell adhesion	cytosol|plasma membrane	sugar binding			ovary(1)|skin(1)	2	all_cancers(60;1.02e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			CTTGTCCCAGCCGTCAAACCG	0.592			NA											44	29	---	---	---	---	NA	NA	NA	NA	NA
GLTSCR1	29998	broad.mit.edu	37	19	48197601	48197601	+	Frame_Shift_Del	DEL	A	A	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:48197601delA	uc002phh.3	+	8	2707	c.2513delA	c.(2512-2514)CAAfs	p.Q838fs	GLTSCR1_uc002phi.3_Frame_Shift_Del_p.Q596fs	NM_015711	NP_056526	Q9NZM4	GSCR1_HUMAN	glioma tumor suppressor candidate region gene 1	838							protein binding			pancreas(3)	3		all_cancers(25;1.8e-07)|all_lung(116;5.73e-06)|Lung NSC(112;9.69e-06)|all_epithelial(76;2.42e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		all cancers(93;0.000358)|OV - Ovarian serous cystadenocarcinoma(262;0.000576)|Epithelial(262;0.0212)|GBM - Glioblastoma multiforme(486;0.0355)		TTTGTCATCCAAAACCAGCTA	0.711			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
SIGLEC5	8778	broad.mit.edu	37	19	52131257	52131257	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:52131257delG	uc002pxe.2	-	5	966	c.827delC	c.(826-828)CCTfs	p.P276fs		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	276	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		CAGGTGTGCAGGGGGGTTGCT	0.602			NA											20	63	---	---	---	---	NA	NA	NA	NA	NA
TTYH1	57348	broad.mit.edu	37	19	54942294	54942296	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	GGA	GGA	-	-	GGA	GGA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr19:54942294_54942296delGGA	uc002qfq.2	+	10	1142_1144	c.1050_1052delGGA	c.(1048-1053)TTGGAG>TTG	p.E352del	TTYH1_uc010yey.1_In_Frame_Del_p.G382del|TTYH1_uc002qfr.2_In_Frame_Del_p.E352del|TTYH1_uc002qft.2_In_Frame_Del_p.E352del|TTYH1_uc002qfu.1_In_Frame_Del_p.E264del	NM_020659	NP_065710	Q9H313	TTYH1_HUMAN	tweety 1 isoform 1	352	Extracellular (Potential).				cell adhesion	chloride channel complex|plasma membrane	chloride channel activity|iron ion transmembrane transporter activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0767)		TGCTGTCCTTGGAGGAGACTCTG	0.453			NA											12	63	---	---	---	---	NA	NA	NA	NA	NA
LTBP1	4052	broad.mit.edu	37	2	33246135	33246135	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:33246135delG	uc002ros.2	+	3	725	c.725delG	c.(724-726)TGGfs	p.W242fs		NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	242					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GCTTCCTCGTGGGGCCCTCCT	0.562			NA											23	81	---	---	---	---	NA	NA	NA	NA	NA
ZNF804A	91752	broad.mit.edu	37	2	185800708	185800708	+	Frame_Shift_Del	DEL	A	A	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr2:185800708delA	uc002uph.2	+	4	1179	c.585delA	c.(583-585)GCAfs	p.A195fs		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	195						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						ATTATACAGCAAAAAATAACC	0.388			NA											12	40	---	---	---	---	NA	NA	NA	NA	NA
EIF2S2	8894	broad.mit.edu	37	20	32693175	32693175	+	Frame_Shift_Del	DEL	T	T	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr20:32693175delT	uc002xaf.2	-	2	361	c.192delA	c.(190-192)AAAfs	p.K64fs	EIF2S2_uc002xag.2_Frame_Shift_Del_p.K64fs|EIF2S2_uc010ges.2_Frame_Shift_Del_p.K39fs	NM_003908	NP_003899	P20042	IF2B_HUMAN	eukaryotic translation initiation factor 2 beta	64						cytosol|eukaryotic translation initiation factor 2 complex	metal ion binding|protein binding|translation initiation factor activity			large_intestine(1)	1						ACCACGCACCTTTTTTCCTAG	0.483			NA											7	185	---	---	---	---	NA	NA	NA	NA	NA
BACH1	571	broad.mit.edu	37	21	30699067	30699067	+	Frame_Shift_Del	DEL	C	C	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr21:30699067delC	uc002ynj.2	+	3	1037	c.922delC	c.(922-924)CCTfs	p.P308fs	BACH1_uc002ynk.2_Frame_Shift_Del_p.P308fs|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	308						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						AGAAGTGACTCCTTTCCCCCA	0.393			NA											33	121	---	---	---	---	NA	NA	NA	NA	NA
HERC5	51191	broad.mit.edu	37	4	89410360	89410363	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	AAGA	AAGA	-	-	AAGA	AAGA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:89410360_89410363delAAGA	uc003hrt.2	+	16	2159_2162	c.2006_2009delAAGA	c.(2005-2010)GAAGAAfs	p.E669fs	HERC5_uc011cdm.1_Frame_Shift_Del_p.E307fs	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	669_670					innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		GCAATTGAGGAAGAAAGAGAGTCT	0.373	Esophageal Squamous(39;887 1012 34045 50514)		NA											9	79	---	---	---	---	NA	NA	NA	NA	NA
MTTP	4547	broad.mit.edu	37	4	100515986	100515986	+	Frame_Shift_Del	DEL	G	G	-	rs140859988		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr4:100515986delG	uc003hvc.3	+	8	1111	c.855delG	c.(853-855)ACGfs	p.T285fs	MTTP_uc011cej.1_Frame_Shift_Del_p.T312fs	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	285	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	CAAAGTACACGGCCATTCCCA	0.468			NA											22	40	---	---	---	---	NA	NA	NA	NA	NA
SNX18	112574	broad.mit.edu	37	5	53814025	53814026	+	Frame_Shift_Ins	INS	-	-	C			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:53814025_53814026insC	uc003jpj.3	+	1	433_434	c.243_244insC	c.(241-246)GTGCCCfs	p.V81fs	SNX18_uc011cqg.1_Frame_Shift_Ins_p.V81fs|SNX18_uc003jpi.3_Frame_Shift_Ins_p.V81fs	NM_052870	NP_443102	Q96RF0	SNX18_HUMAN	sorting nexin 18 isoform b	81_82					cell communication|endocytosis|positive regulation of GTPase activity|protein transport	endomembrane system|endosome membrane|extrinsic to internal side of plasma membrane	phosphatidylinositol binding|protein binding				0		Lung NSC(810;3.46e-05)|Breast(144;0.102)				ACGCCAATGTGCCCCCCGGGGG	0.53			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
LYRM7	90624	broad.mit.edu	37	5	130515787	130515787	+	Splice_Site	DEL	G	G	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr5:130515787delG	uc003kvg.1	+	2	92	c.19_splice	c.e2-1	p.V7_splice		NM_181705	NP_859056	Q5U5X0	LYRM7_HUMAN	Lyrm7 homolog												0		all_cancers(142;0.0377)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TTTCTTAACAGGTTTTACAGC	0.219			NA											28	26	---	---	---	---	NA	NA	NA	NA	NA
KIAA1009	22832	broad.mit.edu	37	6	84896233	84896233	+	Frame_Shift_Del	DEL	A	A	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:84896233delA	uc010kbp.2	-	12	1315	c.1218delT	c.(1216-1218)TTTfs	p.F406fs	KIAA1009_uc003pkj.3_Frame_Shift_Del_p.F330fs|KIAA1009_uc003pkk.2_Frame_Shift_Del_p.F406fs|KIAA1009_uc003pki.3_5'UTR	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	406					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		CATTTTTGTCAAAAAAAAGGT	0.358			NA											8	81	---	---	---	---	NA	NA	NA	NA	NA
PRDM1	639	broad.mit.edu	37	6	106553457	106553457	+	Frame_Shift_Del	DEL	A	A	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr6:106553457delA	uc003prd.2	+	5	1656	c.1422delA	c.(1420-1422)GGAfs	p.G474fs	PRDM1_uc003pre.2_Frame_Shift_Del_p.G340fs	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	474					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CCTCAGATGGAGCCCGGAGGT	0.672			NA	D|N|Mis|F|S		DLBCL								7	73	---	---	---	---	NA	NA	NA	NA	NA
GET4	51608	broad.mit.edu	37	7	931930	931933	+	Frame_Shift_Del	DEL	AAAC	AAAC	-	rs150124099		TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	AAAC	AAAC	-	-	AAAC	AAAC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:931930_931933delAAAC	uc003sjl.1	+	6	713_716	c.621_624delAAAC	c.(619-624)AAAAACfs	p.K207fs	GET4_uc003sjj.1_RNA	NM_015949	NP_057033	Q7L5D6	GET4_HUMAN	hypothetical protein LOC51608	207_208					tail-anchored membrane protein insertion into ER membrane|transport	BAT3 complex	protein binding				0						TCTGTTTAAAAAACAAAAGTAGCG	0.564			NA											37	148	---	---	---	---	NA	NA	NA	NA	NA
NPSR1	387129	broad.mit.edu	37	7	34724296	34724296	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr7:34724296delG	uc003teg.1	+	2	408	c.280delG	c.(280-282)GATfs	p.D94fs	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Frame_Shift_Del_p.D94fs|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Frame_Shift_Del_p.E94fs|NPSR1_uc003tei.1_Frame_Shift_Del_p.D94fs|NPSR1_uc010kww.1_Frame_Shift_Del_p.D94fs|NPSR1_uc011kar.1_Frame_Shift_Del_p.E94fs	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	94	Helical; Name=2; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	GGCCATCACAGGTAAGTAACT	0.383			NA											14	39	---	---	---	---	NA	NA	NA	NA	NA
PIWIL2	55124	broad.mit.edu	37	8	22137081	22137081	+	Frame_Shift_Del	DEL	G	G	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chr8:22137081delG	uc003xbn.2	+	2	330	c.182delG	c.(181-183)AGGfs	p.R61fs	PIWIL2_uc011kzf.1_Frame_Shift_Del_p.R61fs|PIWIL2_uc010ltv.2_Frame_Shift_Del_p.R61fs	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	61					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		AGCACACAGAGGGGGCCAGCA	0.542			NA											8	61	---	---	---	---	NA	NA	NA	NA	NA
IRS4	8471	broad.mit.edu	37	X	107977851	107977851	+	Frame_Shift_Del	DEL	C	C	-			TCGA-97-7937-01A-11D-2167-08	TCGA-97-7937-10A-01D-2167-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9e485f06-af03-4dd7-900d-f1f15293a6a1	ca425b2a-6d19-4c80-ab04-ee76c1d18888	g.chrX:107977851delC	uc004eoc.2	-	1	1757	c.1724delG	c.(1723-1725)GGAfs	p.G575fs		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	575						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						ATCTCCAGGTCCCTGGCCACC	0.617			NA											135	59	---	---	---	---	NA	NA	NA	NA	NA
