Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TTLL2	0	genome.wustl.edu	37	6	167754992	167754992	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	6	167754992	167754992	C	A	SNP	TTLL2	ENST00000239587	human	ensembl	74_37	+1	known	missense	c.1604	p.T535N	0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL2	HGNC	ENSG00000120440	tier1	-	-	42	0	0.00	37	9	19.57
ACAD10	0	genome.wustl.edu	37	12	112167686	112167686	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	112167686	112167686	G	A	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	missense	c.1413	p.M471I	1.000	pfam_Aminoglycoside_PTrfase,superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271	tier1	-	-	35	0	0.00	735	79	9.69
ENSG00000251199	0	genome.wustl.edu	37	4	135248568	135248568	+	RNA	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	4	135248568	135248568	C	T	SNP	ENSG00000251199	ENST00000504728	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-400D2.2	Clone_based_vega_gene	ENSG00000251199	tier1	-	-	38	0	0.00	31	10	24.39
ZC3H14	0	genome.wustl.edu	37	14	89069266	89069266	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	14	89069266	89069266	G	A	SNP	ZC3H14	ENST00000251038	human	ensembl	74_37	+1	known	missense	c.1609	p.E537K	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H14	HGNC	ENSG00000100722	tier1	-	-	30	0	0.00	50	11	18.03
LOC100288152	0	genome.wustl.edu	37	5	475338	475355	+	RNA	DEL	GGAAAGTTAGGGTCACCG	GGAAAGTTAGGGTCACCG	-			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	GGAAAGTTAGGGTCACCG	GGAAAGTTAGGGTCACCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	5	475338	475355	GGAAAGTTAGGGTCACCG	-	DEL	LOC100288152	ENST00000607286	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.003:0.004:0.003:0.002:0.001:0.001:0.000:0.000:0.000:0.000:0.001:0.002:0.002:0.003:0.010:0.018:0.018	-	-	-	no_errors	CTD-2228K2.7	Clone_based_vega_gene	ENSG00000225138	tier1			NA	NA	NA	NA	NA	NA
PGLYRP2	0	genome.wustl.edu	37	19	15580569	15580569	+	Silent	SNP	A	A	G			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	19	15580569	15580569	A	G	SNP	PGLYRP2	ENST00000292609	human	ensembl	74_37	-1	known	silent	c.1515	p.S505	0.283	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	pfam_Amidase_domain,superfamily_Amidase_domain,smart_PGRP_domain_met/bac,smart_Amidase_domain	-	no_errors	PGLYRP2	HGNC	ENSG00000161031	tier1	-	-	11	0	0.00	8	7	43.75
FEZF1	0	genome.wustl.edu	37	7	121944152	121944152	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	7	121944152	121944152	C	T	SNP	FEZF1	ENST00000442488	human	ensembl	74_37	-1	known	missense	c.340	p.A114T	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF1	HGNC	ENSG00000128610	tier1	-	-	33	0	0.00	23	6	20.00
FCGR2A	0	genome.wustl.edu	37	1	161476328	161476328	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	1	161476328	161476328	G	A	SNP	FCGR2A	ENST00000271450	human	ensembl	74_37	+1	known	missense	c.311	p.C104Y	0.966	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCGR2A	HGNC	ENSG00000143226	tier1	-	-	55	0	0.00	194	77	28.41
ZNF25	0	genome.wustl.edu	37	10	38239494	38239495	+	RNA	INS	-	-	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	10	38239494	38239495	-	T	INS	ZNF25	ENST00000374633	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004:0.003	-	-	-	no_errors	ZNF25	HGNC	ENSG00000175395	tier1			19	0	0.00	17	6	26.09
PRB4	0	genome.wustl.edu	37	12	11461420	11461420	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	11461420	11461420	G	A	SNP	PRB4	ENST00000279575	human	ensembl	74_37	-1	known	missense	c.497	p.P166L	0.002	NULL	NULL	-	no_errors	PRB4	HGNC	ENSG00000230657	tier1	-	-	54	0	0.00	76	24	24.00
OOEP	0	genome.wustl.edu	37	6	74078539	74078539	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	6	74078539	74078539	C	G	SNP	OOEP	ENST00000370359	human	ensembl	74_37	-1	known	missense	c.418	p.D140H	0.000	NULL	NULL	-	no_errors	OOEP	HGNC	ENSG00000203907	tier1	-	-	71	0	0.00	94	11	10.48
GRAMD1A	0	genome.wustl.edu	37	19	35491326	35491327	+	RNA	INS	-	-	GCCCT			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	19	35491326	35491327	-	GCCCT	INS	GRAMD1A	ENST00000603669	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.780:0.776	-	-	-	no_errors	GRAMD1A	HGNC	ENSG00000089351	tier1			NA	NA	NA	NA	NA	NA
PAN2	0	genome.wustl.edu	37	12	56712911	56712911	+	Nonsense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	56712911	56712911	G	A	SNP	PAN2	ENST00000425394	human	ensembl	74_37	-1	known	nonsense	c.3337	p.R1113*	1.000	pfam_Exonuclease_RNaseT/DNA_pol3,superfamily_RNaseH-like_dom,smart_Exonuclease	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19/C67,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19/C67	-	no_errors	PAN2	HGNC	ENSG00000135473	tier1	-	-	42	0	0.00	55	5	8.33
PXDNL	0	genome.wustl.edu	37	8	52321402	52321402	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	8	52321402	52321402	G	C	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2782	p.P928A	0.001	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485	tier1	-	-	40	0	0.00	48	54	52.94
EEA1	0	genome.wustl.edu	37	12	93246049	93246049	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	93246049	93246049	C	T	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	missense	c.544	p.E182K	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	tier1	-	-	52	0	0.00	307	189	38.10
KANK3	0	genome.wustl.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	TCGCTGTCGCCA	-			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	TCGCTGTCGCCA	TCGCTGTCGCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	19	8398950	8398961	TCGCTGTCGCCA	-	DEL	KANK3	ENST00000593649	human	ensembl	74_37	-1	known	in_frame_del	c.1478_1467	p.DGDS489in_frame_del	0.002:0.046:0.028:0.025:0.017:0.004:0.003:0.002:0.000:0.001:0.003:0.001	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	KANK3	HGNC	ENSG00000186994	tier1			NA	NA	NA	NA	NA	NA
ARID3A	0	genome.wustl.edu	37	19	929874	929874	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	19	929874	929874	G	T	SNP	ARID3A	ENST00000263620	human	ensembl	74_37	+1	known	missense	c.346	p.D116Y	0.290	NULL	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID3A	HGNC	ENSG00000116017	tier1	-	-	57	0	0.00	31	9	22.50
ENSG00000261863	0	genome.wustl.edu	37	17	4513974	4513975	+	RNA	INS	-	-	AAAG			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	17	4513974	4513975	-	AAAG	INS	ENSG00000261863	ENST00000573270	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006:0.005	-	-	-	no_errors	RP11-141J13.5	Clone_based_vega_gene	ENSG00000261863	tier1			10	0	0.00	7	8	53.33
PXDNL	0	genome.wustl.edu	37	8	52321291	52321291	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	8	52321291	52321291	G	C	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2893	p.L965V	0.921	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485	tier1	-	-	42	0	0.00	52	53	50.48
CISH	0	genome.wustl.edu	37	3	50645149	50645149	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	3	50645149	50645149	G	T	SNP	CISH	ENST00000443053	human	ensembl	74_37	-1	known	missense	c.717	p.S239R	1.000	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	CISH	HGNC	ENSG00000114737	tier1	-	-	50	0	0.00	46	10	17.86
PXDNL	0	genome.wustl.edu	37	8	52321892	52321892	+	Silent	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	8	52321892	52321892	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	silent	c.2292	p.P764	0.218	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485	tier1	-	-	8	0	0.00	6	8	57.14
RAB3GAP1	0	genome.wustl.edu	37	2	135884187	135884188	+	Frame_Shift_Ins	INS	-	-	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	2	135884187	135884188	-	T	INS	RAB3GAP1	ENST00000264158	human	ensembl	74_37	+1	known	frame_shift_ins	c.934_935	p.R313fs	1.000:1.000	NULL	NULL	-	no_errors	RAB3GAP1	HGNC	ENSG00000115839	tier1			69	0	0.00	79	28	26.17
PXDNL	0	genome.wustl.edu	37	8	52322097	52322097	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	8	52322097	52322097	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2087	p.S696F	0.996	NULL	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485	tier1	-	-	77	0	0.00	46	62	57.41
TRPM2	0	genome.wustl.edu	37	21	45821738	45821738	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	21	45821738	45821738	C	G	SNP	TRPM2	ENST00000300482	human	ensembl	74_37	+1	known	missense	c.2496	p.I832M	0.999	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	tier1	-	-	75	0	0.00	305	158	34.05
UGGT2	0	genome.wustl.edu	37	13	96511890	96511890	+	Silent	SNP	T	T	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	13	96511890	96511890	T	A	SNP	UGGT2	ENST00000376747	human	ensembl	74_37	-1	known	silent	c.3780	p.P1260	0.656	pfam_Glyco_trans_8	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	tier1	-	-	59	0	0.00	121	29	19.33
MARCH9	0	genome.wustl.edu	37	12	58150839	58150839	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	58150839	58150839	T	A	SNP	MARCH9	ENST00000266643	human	ensembl	74_37	+1	known	missense	c.485	p.L162Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH9	HGNC	ENSG00000139266	tier1	-	-	91	0	0.00	91	156	62.90
PXDNL	0	genome.wustl.edu	37	8	52321601	52321601	+	Silent	SNP	G	G	C			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	8	52321601	52321601	G	C	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	silent	c.2583	p.L861	1.000	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485	tier1	-	-	62	0	0.00	41	58	58.59
LOC441666	0	genome.wustl.edu	37	10	42832380	42832380	+	RNA	SNP	A	A	G			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	10	42832380	42832380	A	G	SNP	LOC441666	ENST00000609841	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-313J2.1	Clone_based_vega_gene	ENSG00000215146	tier1	rs140179806	-	55	0	0.00	102	13	11.30
FARP1	0	genome.wustl.edu	37	13	99043120	99043120	+	Silent	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	13	99043120	99043120	G	A	SNP	FARP1	ENST00000376586	human	ensembl	74_37	+1	known	silent	c.1074	p.K358	0.994	pfam_FERM-adjacent	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_FERM_PH-like_C,pfam_FERM_N,pfam_FERM-adjacent,pfam_FERM_central,superfamily_DH-domain,superfamily_FERM_central,smart_Band_41_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_FERM_domain,pfscan_Pleckstrin_homology,pfscan_DH-domain,prints_Band_41_fam,prints_Ez/rad/moesin_like	-	no_errors	FARP1	HGNC	ENSG00000152767	tier1	-	-	41	0	0.00	73	13	15.12
RXRA	0	genome.wustl.edu	37	9	137331937	137331938	+	RNA	INS	-	-	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	9	137331937	137331938	-	A	INS	RXRA	ENST00000356384	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.998	-	-	-	no_errors	RXRA	HGNC	ENSG00000186350	tier1			31	0	0.00	36	5	12.20
NOS1	0	genome.wustl.edu	37	12	117662836	117662836	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	117662836	117662836	C	G	SNP	NOS1	ENST00000317775	human	ensembl	74_37	-1	known	missense	c.3811	p.D1271H	1.000	pfam_OxRdtase_FAD/NAD-bd,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,pfam_PDZ,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,superfamily_PDZ,smart_PDZ,pirsf_NOS_euk,pfscan_PDZ,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS1	HGNC	ENSG00000089250	tier1	-	-	35	0	0.00	197	19	8.80
KDM4B	0	genome.wustl.edu	37	19	5082456	5082456	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	19	5082456	5082456	G	A	SNP	KDM4B	ENST00000159111	human	ensembl	74_37	+1	known	missense	c.859	p.A287T	1.000	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4B	HGNC	ENSG00000127663	tier1	-	-	113	1	0.88	100	23	18.70
FCGR2A	0	genome.wustl.edu	37	1	161476426	161476426	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	1	161476426	161476426	G	A	SNP	FCGR2A	ENST00000536731	human	ensembl	74_37	+1	known	missense	c.409	p.G137R	0.000	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	FCGR2A	HGNC	ENSG00000143226	tier1	-	-	38	0	0.00	119	56	31.82
KRTAP6-1	0	genome.wustl.edu	37	21	31986098	31986098	+	Silent	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	21	31986098	31986098	G	A	SNP	KRTAP6-1	ENST00000329122	human	ensembl	74_37	-1	known	silent	c.126	p.F42	0.000	NULL	NULL	-	no_errors	KRTAP6-1	HGNC	ENSG00000184724	tier1	-	-	36	0	0.00	85	29	25.44
FCGR2A	0	genome.wustl.edu	37	1	161476226	161476226	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	1	161476226	161476226	G	A	SNP	FCGR2A	ENST00000271450	human	ensembl	74_37	+1	known	missense	c.209	p.S70N	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCGR2A	HGNC	ENSG00000143226	tier1	-	-	62	0	0.00	216	84	27.91
GGT1	0	genome.wustl.edu	37	22	25019094	25019094	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	22	25019094	25019094	G	C	SNP	GGT1	ENST00000248923	human	ensembl	74_37	+1	known	missense	c.754	p.D252H	1.000	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031	tier1	-	-	60	0	0.00	115	17	12.88
ENSG00000265194	0	genome.wustl.edu	37	9	21861902	21861903	+	RNA	INS	-	-	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	9	21861902	21861903	-	T	INS	ENSG00000265194	ENST00000581788	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-70L8.4	Clone_based_vega_gene	ENSG00000265194	tier1			10	0	0.00	31	5	13.89
ATP1A3	0	genome.wustl.edu	37	19	42482338	42482338	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	19	42482338	42482338	C	T	SNP	ATP1A3	ENST00000302102	human	ensembl	74_37	-1	known	missense	c.1771	p.D591N	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A3	HGNC	ENSG00000105409	tier1	-	-	51	0	0.00	49	68	58.12
ANAPC4	0	genome.wustl.edu	37	4	25384985	25384985	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	4	25384985	25384985	T	A	SNP	ANAPC4	ENST00000510092	human	ensembl	74_37	+1	known	missense	c.338	p.M113K	1.000	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	superfamily_WD40_repeat_dom,pirsf_APC4_metazoa	-	no_errors	ANAPC4	HGNC	ENSG00000053900	tier1	-	-	31	0	0.00	35	6	14.63
PTPRVP	0	genome.wustl.edu	37	1	202156135	202156136	+	RNA	INS	-	-	CCTCGCT			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	1	202156135	202156136	-	CCTCGCT	INS	PTPRVP	ENST00000482597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.022:0.016	-	-	-	no_errors	PTPRVP	HGNC	ENSG00000243323	tier1			NA	NA	NA	NA	NA	NA
KIF19	0	genome.wustl.edu	37	17	72347018	72347018	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	17	72347018	72347018	G	A	SNP	KIF19	ENST00000389916	human	ensembl	74_37	+1	known	missense	c.1561	p.E521K	0.991	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF19	HGNC	ENSG00000196169	tier1	rs143225781	GMAF=0	64	0	0.00	48	10	17.24
PXDNL	0	genome.wustl.edu	37	8	52321309	52321309	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	8	52321309	52321309	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2875	p.H959Y	0.997	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,prints_Haem_peroxidase_animal_subgr,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485	tier1	-	-	53	0	0.00	56	55	49.55
PTGES	0	genome.wustl.edu	37	9	132501706	132501707	+	RNA	INS	-	-	ACACAT			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	9	132501706	132501707	-	ACACAT	INS	PTGES	ENST00000481476	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PTGES	HGNC	ENSG00000148344	tier1			NA	NA	NA	NA	NA	NA
EEA1	0	genome.wustl.edu	37	12	93244995	93244995	+	Silent	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	93244995	93244995	C	T	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	silent	c.690	p.L230	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	tier1	-	-	63	0	0.00	321	234	42.16
GOLGA8M	0	genome.wustl.edu	37	15	28951305	28951305	+	Silent	SNP	T	T	C			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	15	28951305	28951305	T	C	SNP	GOLGA8M	ENST00000340249	human	ensembl	74_37	-1	known	silent	c.588	p.V196	0.572	NULL	NULL	-	no_errors	GOLGA8M	HGNC	ENSG00000188626	tier1	-	-	12	0	0.00	13	5	26.32
PRPF4B	0	genome.wustl.edu	37	6	4059123	4059124	+	RNA	INS	-	-	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	6	4059123	4059124	-	A	INS	PRPF4B	ENST00000466185	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.004	-	-	-	no_errors	PRPF4B	HGNC	ENSG00000112739	tier1			14	0	0.00	23	3	11.54
OR4F6	0	genome.wustl.edu	37	15	102346298	102346298	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	15	102346298	102346298	A	T	SNP	OR4F6	ENST00000328882	human	ensembl	74_37	+1	known	missense	c.376	p.I126L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4F6	HGNC	ENSG00000184140	tier1	-	-	50	0	0.00	146	25	14.62
CXADRP3	0	genome.wustl.edu	37	18	14478406	14478406	+	RNA	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	18	14478406	14478406	G	A	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766	tier1	-	-	41	0	0.00	31	10	24.39
DPPA3P2	0	genome.wustl.edu	37	14	36840954	36840954	+	RNA	SNP	A	A	G			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	14	36840954	36840954	A	G	SNP	DPPA3P2	ENST00000557188	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	DPPA3P2	HGNC	ENSG00000188831	tier1	-	-	54	0	0.00	133	24	15.29
MARCH9	0	genome.wustl.edu	37	12	58150836	58150836	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	58150836	58150836	T	C	SNP	MARCH9	ENST00000266643	human	ensembl	74_37	+1	known	missense	c.482	p.V161A	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH9	HGNC	ENSG00000139266	tier1	-	-	90	0	0.00	88	167	65.23
LOC642361	0	genome.wustl.edu	37	10	81586763	81586764	+	RNA	INS	-	-	TCGCCTCGCC			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	10	81586763	81586764	-	TCGCCTCGCC	INS	LOC642361	ENST00000605920	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.302:0.319	-	-	-	no_errors	RP11-182L21.6	Clone_based_vega_gene	ENSG00000272447	tier1			NA	NA	NA	NA	NA	NA
LYPD8	0	genome.wustl.edu	37	1	248885201	248885218	+	RNA	DEL	TGAAAACAATCACAAAGT	TGAAAACAATCACAAAGT	-			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	TGAAAACAATCACAAAGT	TGAAAACAATCACAAAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	1	248885201	248885218	TGAAAACAATCACAAAGT	-	DEL	LYPD8	ENST00000436484	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.058:0.046:0.026:0.024:0.016:0.010:0.006:0.002:0.001:0.002:0.002:0.003:0.011:0.024:0.029:0.029:0.025:0.028	-	-	-	no_errors	XX-CR54.3	Clone_based_vega_gene	ENSG00000232694	tier1			NA	NA	NA	NA	NA	NA
HMGB1P5	0	genome.wustl.edu	37	3	22424338	22424338	+	RNA	DEL	A	A	-			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	3	22424338	22424338	A	-	DEL	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967	tier1			12	0	0.00	26	4	13.33
PXDNL	0	genome.wustl.edu	37	8	52321456	52321456	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	8	52321456	52321456	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	missense	c.2728	p.L910F	0.845	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485	tier1	-	-	40	0	0.00	42	48	53.33
PXDNL	0	genome.wustl.edu	37	8	52321339	52321339	+	Nonsense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	8	52321339	52321339	G	A	SNP	PXDNL	ENST00000356297	human	ensembl	74_37	-1	known	nonsense	c.2845	p.Q949*	0.880	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like_dom	-	no_errors	PXDNL	HGNC	ENSG00000147485	tier1	-	-	53	0	0.00	53	61	53.51
CISH	0	genome.wustl.edu	37	3	50645127	50645127	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	3	50645127	50645127	C	T	SNP	CISH	ENST00000443053	human	ensembl	74_37	-1	known	missense	c.739	p.V247I	0.151	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_SH2,pfam_SOCS_C,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2,prints_SH2	-	no_errors	CISH	HGNC	ENSG00000114737	tier1	-	-	56	0	0.00	51	7	12.07
TTN	0	genome.wustl.edu	37	2	179474099	179474099	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	2	179474099	179474099	G	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.44234	p.P14745Q	1.000	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	20	0	0.00	60	11	15.49
AOX2P	0	genome.wustl.edu	37	2	201619758	201619761	+	RNA	DEL	TGTG	TGTG	-			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	TGTG	TGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	2	201619758	201619761	TGTG	-	DEL	AOX2P	ENST00000472376	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.002:0.002	-	-	-	no_errors	AOX2P	HGNC	ENSG00000243478	tier1			8	0	0.00	14	3	17.65
SECISBP2	0	genome.wustl.edu	37	9	91964806	91964806	+	Silent	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	9	91964806	91964806	C	T	SNP	SECISBP2	ENST00000375807	human	ensembl	74_37	+1	known	silent	c.1854	p.H618	0.000	NULL	pfam_Ribosomal_L7Ae/L30e/S12e/Gad45	-	no_errors	SECISBP2	HGNC	ENSG00000187742	tier1	-	-	33	0	0.00	54	17	23.94
MUC2	0	genome.wustl.edu	37	11	1098695	1098695	+	Silent	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	11	1098695	1098695	C	T	SNP	MUC2	ENST00000441003	human	ensembl	74_37	+1	known	silent	c.7065	p.C2355	0.647	pfam_Unchr_dom_Cys-rich,smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,superfamily_Prot_inh_PMP,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC2	HGNC	ENSG00000198788	tier1	-	-	92	0	0.00	74	12	13.95
COBL	0	genome.wustl.edu	37	7	51096630	51096630	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	7	51096630	51096630	G	T	SNP	COBL	ENST00000395542	human	ensembl	74_37	-1	known	missense	c.2409	p.D803E	0.807	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfam_WH2_dom,smart_WH2_dom,pfscan_WH2_dom	-	no_errors	COBL	HGNC	ENSG00000106078	tier1	-	-	25	0	0.00	30	4	11.76
SEMA5B	0	genome.wustl.edu	37	3	122631054	122631054	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	3	122631054	122631054	G	A	SNP	SEMA5B	ENST00000451055	human	ensembl	74_37	-1	known	missense	c.3023	p.T1008M	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5B	HGNC	ENSG00000082684	tier1	-	-	44	0	0.00	25	5	16.67
EEA1	0	genome.wustl.edu	37	12	93246073	93246073	+	Splice_Site	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	93246073	93246073	C	T	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	splice_site	c.521-1	e8-1	1.000	-	-	-	no_errors	EEA1	HGNC	ENSG00000102189	tier1	-	-	37	0	0.00	262	159	37.68
SHC3	0	genome.wustl.edu	37	9	91690129	91690129	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	9	91690129	91690129	C	A	SNP	SHC3	ENST00000375835	human	ensembl	74_37	-1	known	missense	c.624	p.M208I	0.989	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC3	HGNC	ENSG00000148082	tier1	-	-	41	0	0.00	70	11	13.58
ACVR1B	0	genome.wustl.edu	37	12	52385793	52385793	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	52385793	52385793	C	T	SNP	ACVR1B	ENST00000426655	human	ensembl	74_37	+1	known	missense	c.1408	p.P470S	0.002	pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ACVR1B	HGNC	ENSG00000135503	tier1	-	-	35	0	0.00	52	18	25.71
PCDHA6	0	genome.wustl.edu	37	5	140209016	140209016	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	5	140209016	140209016	A	C	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.1340	p.D447A	1.000	superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	tier1	-	-	204	0	0.00	133	36	21.30
PRR5L	0	genome.wustl.edu	37	11	36472837	36472837	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	11	36472837	36472837	C	A	SNP	PRR5L	ENST00000378867	human	ensembl	74_37	+1	known	missense	c.664	p.L222I	0.998	NULL	pfam_HbrB	-	no_errors	PRR5L	HGNC	ENSG00000135362	tier1	-	-	52	0	0.00	91	13	12.50
MAGEB18	0	genome.wustl.edu	37	X	26158106	26158106	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	X	26158106	26158106	C	T	SNP	MAGEB18	ENST00000325250	human	ensembl	74_37	+1	known	missense	c.1004	p.T335M	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB18	HGNC	ENSG00000176774	tier1	-	-	19	0	0.00	11	22	66.67
RNF212	0	genome.wustl.edu	37	4	1087327	1087328	+	In_Frame_Ins	INS	-	-	CTGCCCAGGCTGGAGCCAGCC			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	4	1087327	1087328	-	CTGCCCAGGCTGGAGCCAGCC	INS	RNF212	ENST00000333673	human	ensembl	74_37	-1	known	in_frame_ins	c.722_721	p.S241in_frame_insWLAPAWAA	0.085:0.000	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	tier1			NA	NA	NA	NA	NA	NA
PREX2	0	genome.wustl.edu	37	8	68992747	68992747	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	8	68992747	68992747	G	A	SNP	PREX2	ENST00000288368	human	ensembl	74_37	+1	known	missense	c.1712	p.G571E	1.000	superfamily_PDZ	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	tier1	-	-	51	0	0.00	326	47	12.60
SEMA5A	0	genome.wustl.edu	37	5	9202171	9202171	+	Silent	SNP	C	C	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	5	9202171	9202171	C	A	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	silent	c.828	p.L276	0.821	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	tier1	-	-	17	0	0.00	77	18	18.75
DUSP10	0	genome.wustl.edu	37	1	221875157	221875158	+	RNA	DEL	AA	AA	-			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	1	221875157	221875158	AA	-	DEL	DUSP10	ENST00000468085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DUSP10	HGNC	ENSG00000143507	tier1			16	0	0.00	24	3	11.11
PRSS1	0	genome.wustl.edu	37	7	142460394	142460394	+	Silent	SNP	T	T	C			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	7	142460394	142460394	T	C	SNP	PRSS1	ENST00000311737	human	ensembl	74_37	+1	known	silent	c.567	p.L189	0.939	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS1	HGNC	ENSG00000204983	tier1	-	-	53	0	0.00	86	20	18.52
ZFPM1	0	genome.wustl.edu	37	16	88594452	88594452	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	16	88594452	88594452	G	T	SNP	ZFPM1	ENST00000319555	human	ensembl	74_37	+1	known	missense	c.518	p.W173L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZFPM1	HGNC	ENSG00000179588	tier1	-	-	70	0	0.00	41	15	26.79
MDGA2	0	genome.wustl.edu	37	14	48143965	48143965	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	14	48143965	48143965	G	T	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.35	p.A12D	1.000	NULL	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781	tier1	-	-	50	0	0.00	37	4	9.76
GLIPR2	0	genome.wustl.edu	37	9	36162776	36162777	+	RNA	INS	-	-	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	9	36162776	36162777	-	T	INS	GLIPR2	ENST00000474050	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GLIPR2	HGNC	ENSG00000122694	tier1			19	0	0.00	23	3	11.54
ULK1	0	genome.wustl.edu	37	12	132399938	132399938	+	Silent	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	132399938	132399938	G	A	SNP	ULK1	ENST00000321867	human	ensembl	74_37	+1	known	silent	c.1581	p.E527	0.312	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK1	HGNC	ENSG00000177169	tier1	-	-	105	0	0.00	828	147	15.06
COBLL1	0	genome.wustl.edu	37	2	165551295	165551296	+	Frame_Shift_Ins	INS	-	-	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	2	165551295	165551296	-	A	INS	COBLL1	ENST00000194871	human	ensembl	74_37	-1	known	frame_shift_ins	c.2922_2921	p.L974fs	0.958:0.972	NULL	pfam_Cordon-bleu_ubiquitin_domain,pfscan_WH2_dom	-	no_errors	COBLL1	HGNC	ENSG00000082438	tier1			24	0	0.00	43	6	12.24
PITPNM3	0	genome.wustl.edu	37	17	6381307	6381307	+	Silent	SNP	G	G	A			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	17	6381307	6381307	G	A	SNP	PITPNM3	ENST00000262483	human	ensembl	74_37	-1	known	silent	c.888	p.I296	1.000	NULL	pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD	-	no_errors	PITPNM3	HGNC	ENSG00000091622	tier1	-	-	79	0	0.00	82	15	15.31
EEA1	0	genome.wustl.edu	37	12	93246699	93246699	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	12	93246699	93246699	G	C	SNP	EEA1	ENST00000322349	human	ensembl	74_37	-1	known	missense	c.509	p.T170S	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	tier1	-	-	49	0	0.00	366	213	36.79
ABTB2	0	genome.wustl.edu	37	11	34175853	34175853	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	11	34175853	34175853	G	T	SNP	ABTB2	ENST00000435224	human	ensembl	74_37	-1	known	missense	c.2839	p.L947I	1.000	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016	tier1	-	-	35	0	0.00	42	4	8.70
FTMT	0	genome.wustl.edu	37	5	121188023	121188023	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	5	121188023	121188023	A	T	SNP	FTMT	ENST00000321339	human	ensembl	74_37	+1	known	missense	c.365	p.E122V	1.000	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin-like_SF,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867	tier1	-	-	74	0	0.00	63	9	12.50
AFAP1L2	0	genome.wustl.edu	37	10	116064626	116064626	+	Frame_Shift_Del	DEL	T	T	-			TCGA-3B-A9HO-01A-11D-A387-09	TCGA-3B-A9HO-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	90f9cecc-40c1-4294-b6d8-29c0874a1228	3d9eb4b8-91f4-43d2-aaea-3a72e603ca41	10	116064626	116064626	T	-	DEL	AFAP1L2	ENST00000545353	human	ensembl	74_37	-1	known	frame_shift_del	c.1295	p.H432fs	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L2	HGNC	ENSG00000169129	tier1			66	0	0.00	30	7	18.92
