Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SCN1A	0	genome.wustl.edu	37	2	166866229	166866229	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	2	166866229	166866229	C	G	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.4002	p.R1334S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	tier1	-	-	53	0	0.00	52	20	27.78
KIAA1147	0	genome.wustl.edu	37	7	141385377	141385377	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	7	141385377	141385377	C	G	SNP	KIAA1147	ENST00000536163	human	ensembl	74_37	-1	known	missense	c.428	p.S143T	1.000	pfam_DUF2347	pfam_DUF2347	-	no_errors	KIAA1147	HGNC	ENSG00000257093	tier1	-	-	37	0	0.00	17	14	45.16
SLC8A3	0	genome.wustl.edu	37	14	70634566	70634566	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	14	70634566	70634566	C	T	SNP	SLC8A3	ENST00000381269	human	ensembl	74_37	-1	known	missense	c.574	p.G192R	1.000	pfam_NaCa_Exmemb,tigrfam_Na_Ca_Ex	pfam_NaCa_Exmemb,pfam_Calx_beta,smart_Calx_beta,prints_Na_Ca_Ex,tigrfam_Na_Ca_Ex	-	no_errors	SLC8A3	HGNC	ENSG00000100678	tier1	-	-	14	0	0.00	12	11	47.83
HRCT1	0	genome.wustl.edu	37	9	35906348	35906350	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	9	35906348	35906350	CTG	-	DEL	HRCT1	ENST00000354323	human	ensembl	74_37	+1	known	in_frame_del	c.64_66	p.L25in_frame_del	0.168:0.493:0.516	NULL	NULL	-	no_errors	HRCT1	HGNC	ENSG00000196196	tier1			45	0	0.00	42	5	10.64
KCNA1	0	genome.wustl.edu	37	12	5021427	5021427	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	12	5021427	5021427	C	G	SNP	KCNA1	ENST00000382545	human	ensembl	74_37	+1	known	missense	c.883	p.R295G	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv1.1,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv1.3	-	no_errors	KCNA1	HGNC	ENSG00000111262	tier1	-	-	11	0	0.00	6	4	40.00
EXD2	0	genome.wustl.edu	37	14	69708329	69708329	+	RNA	SNP	C	C	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	14	69708329	69708329	C	A	SNP	EXD2	ENST00000492815	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	EXD2	HGNC	ENSG00000081177	tier1	-	-	23	0	0.00	9	4	30.77
NOC2L	0	genome.wustl.edu	37	1	892517	892517	+	Nonsense_Mutation	SNP	C	C	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	1	892517	892517	C	A	SNP	NOC2L	ENST00000327044	human	ensembl	74_37	-1	known	nonsense	c.316	p.E106*	0.085	NULL	pfam_Noc2,superfamily_ARM-type_fold	-	no_errors	NOC2L	HGNC	ENSG00000188976	tier1	-	-	47	0	0.00	47	5	9.62
MCM9	0	genome.wustl.edu	37	6	119137129	119137129	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	6	119137129	119137129	G	T	SNP	MCM9	ENST00000316316	human	ensembl	74_37	-1	known	missense	c.2290	p.H764N	0.001	NULL	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,prints_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase	-	no_errors	MCM9	HGNC	ENSG00000111877	tier1	-	-	29	0	0.00	39	5	11.36
ENSG00000255193	0	genome.wustl.edu	37	11	23752351	23752351	+	RNA	SNP	A	A	G			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	11	23752351	23752351	A	G	SNP	ENSG00000255193	ENST00000534068	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-945A11.1	Clone_based_vega_gene	ENSG00000255193	tier1	-	-	26	0	0.00	15	10	40.00
TMEM255B	0	genome.wustl.edu	37	13	114514919	114514919	+	RNA	SNP	A	A	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	13	114514919	114514919	A	T	SNP	TMEM255B	ENST00000467169	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	TMEM255B	HGNC	ENSG00000184497	tier1	rs199809562	-	62	0	0.00	50	5	9.09
ATP10A	0	genome.wustl.edu	37	15	25924869	25924869	+	Silent	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	15	25924869	25924869	C	T	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	silent	c.4119	p.V1373	0.003	NULL	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190	tier1	-	-	32	0	0.00	14	6	30.00
GON4L	0	genome.wustl.edu	37	1	155785777	155785777	+	RNA	DEL	A	A	-			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	1	155785777	155785777	A	-	DEL	GON4L	ENST00000471341	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GON4L	HGNC	ENSG00000116580	tier1			19	0	0.00	27	8	22.86
LAMP3	0	genome.wustl.edu	37	3	182841970	182841970	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	3	182841970	182841970	G	T	SNP	LAMP3	ENST00000265598	human	ensembl	74_37	-1	known	missense	c.1150	p.L384I	0.997	pfam_Lysosome-assoc_membr_glycop	pfam_Lysosome-assoc_membr_glycop,prints_Lysosome-assoc_membr_glycop	-	no_errors	LAMP3	HGNC	ENSG00000078081	tier1	-	-	49	0	0.00	44	4	8.33
SYNGR4	0	genome.wustl.edu	37	19	48879439	48879439	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	19	48879439	48879439	T	C	SNP	SYNGR4	ENST00000344846	human	ensembl	74_37	+1	known	missense	c.569	p.L190P	1.000	pirsf_Synaptogyrin	pfam_Marvel,pirsf_Synaptogyrin	-	no_errors	SYNGR4	HGNC	ENSG00000105467	tier1	-	-	33	0	0.00	59	6	9.23
TJP2	0	genome.wustl.edu	37	9	71867755	71867755	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	9	71867755	71867755	G	A	SNP	TJP2	ENST00000539225	human	ensembl	74_37	+1	known	missense	c.3439	p.D1147N	0.997	NULL	pfam_PDZ,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin-like,prints_ZonOcculS2,prints_ZonOcculdens	-	no_errors	TJP2	HGNC	ENSG00000119139	tier1	-	-	67	0	0.00	80	10	11.11
RB1	0	genome.wustl.edu	37	13	48947563	48947563	+	Nonsense_Mutation	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	13	48947563	48947563	C	T	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	nonsense	c.1150	p.Q384*	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1	-	-	25	0	0.00	17	20	54.05
KRT14	0	genome.wustl.edu	37	17	39739670	39739670	+	Frame_Shift_Del	DEL	C	C	-			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	17	39739670	39739670	C	-	DEL	KRT14	ENST00000167586	human	ensembl	74_37	-1	known	frame_shift_del	c.1091	p.G364fs	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT14	HGNC	ENSG00000186847	tier1			75	0	0.00	83	13	13.54
LCE2C	0	genome.wustl.edu	37	1	152648741	152648741	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	1	152648741	152648741	C	T	SNP	LCE2C	ENST00000368783	human	ensembl	74_37	+1	known	missense	c.250	p.R84C	0.000	NULL	NULL	-	no_errors	LCE2C	HGNC	ENSG00000187180	tier1	-	-	114	0	0.00	115	41	26.28
SLC4A9	0	genome.wustl.edu	37	5	139741642	139741642	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	5	139741642	139741642	A	C	SNP	SLC4A9	ENST00000230993	human	ensembl	74_37	+1	known	missense	c.674	p.E225A	1.000	pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A9	HGNC	ENSG00000113073	tier1	-	-	47	0	0.00	51	5	8.93
PET112	0	genome.wustl.edu	37	4	152600965	152600965	+	Silent	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	4	152600965	152600965	C	T	SNP	PET112	ENST00000263985	human	ensembl	74_37	-1	known	silent	c.1410	p.Q470	1.000	pfam_Asn/Gln_amidotransferase,superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Asn/Gln_amidotransferase,tigrfam_Apn/Gln-ADT_bsu	pfam_Asn/Gln-tRNA_Trfase_suB/E_cat,pfam_Asn/Gln_amidotransferase,superfamily_Asn/Gln_tRNA_amidoTrfrase-rel,smart_Asn/Gln_amidotransferase,tigrfam_Apn/Gln-ADT_bsu	-	no_errors	PET112	HGNC	ENSG00000059691	tier1	-	-	36	0	0.00	39	6	13.33
CCDC116	0	genome.wustl.edu	37	22	21989038	21989038	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	22	21989038	21989038	C	A	SNP	CCDC116	ENST00000292779	human	ensembl	74_37	+1	known	missense	c.686	p.T229N	0.054	NULL	NULL	-	no_errors	CCDC116	HGNC	ENSG00000161180	tier1	-	-	27	0	0.00	18	14	43.75
MYO5C	0	genome.wustl.edu	37	15	52571854	52571854	+	Silent	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	15	52571854	52571854	G	T	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	silent	c.156	p.V52	0.001	superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	tier1	-	-	28	0	0.00	32	4	11.11
CNNM2	0	genome.wustl.edu	37	10	104679747	104679747	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	10	104679747	104679747	G	A	SNP	CNNM2	ENST00000369878	human	ensembl	74_37	+1	known	missense	c.1510	p.D504N	1.000	NULL	pfam_DUF21,superfamily_cNMP-bd-like	-	no_errors	CNNM2	HGNC	ENSG00000148842	tier1	-	-	77	0	0.00	22	27	55.10
RYR1	0	genome.wustl.edu	37	19	38951109	38951109	+	Nonsense_Mutation	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	19	38951109	38951109	C	T	SNP	RYR1	ENST00000359596	human	ensembl	74_37	+1	known	nonsense	c.2455	p.R819*	0.985	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,superfamily_MG_RAP_rcpt_1,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_MIR_motif	-	no_errors	RYR1	HGNC	ENSG00000196218	tier1	rs193922774	-	42	0	0.00	28	19	40.43
ENSG00000218739	0	genome.wustl.edu	37	2	37426890	37426890	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	2	37426890	37426890	G	A	SNP	ENSG00000218739	ENST00000392061	human	ensembl	74_37	+1	novel	missense	c.43	p.G15R	1.000	NULL	NULL	-	no_errors	AC007390.5	Clone_based_vega_gene	ENSG00000218739	tier1	-	-	66	0	0.00	45	27	37.50
FAM86DP	0	genome.wustl.edu	37	3	75471410	75471410	+	RNA	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	3	75471410	75471410	G	A	SNP	FAM86DP	ENST00000459803	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FAM86DP	HGNC	ENSG00000244026	tier1	-	-	98	0	0.00	98	10	9.26
TBKBP1	0	genome.wustl.edu	37	17	45776002	45776002	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	17	45776002	45776002	G	T	SNP	TBKBP1	ENST00000361722	human	ensembl	74_37	+1	known	missense	c.495	p.L165F	1.000	NULL	NULL	-	no_errors	TBKBP1	HGNC	ENSG00000198933	tier1	-	-	50	0	0.00	80	8	9.09
ENSG00000216136	0	genome.wustl.edu	37	3	96152165	96152165	+	RNA	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	3	96152165	96152165	G	T	SNP	ENSG00000216136	ENST00000401317	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.014	-	-	-	no_errors	AC108697.1	Clone_based_ensembl_gene	ENSG00000216136	tier1	-	-	32	0	0.00	38	4	9.52
COL4A1	0	genome.wustl.edu	37	13	110857840	110857840	+	Splice_Site	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	13	110857840	110857840	C	T	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	splice_site	c.903+1	e16+1	0.998	-	-	-	no_errors	COL4A1	HGNC	ENSG00000187498	tier1	-	-	65	0	0.00	51	29	36.25
ZNF511	0	genome.wustl.edu	37	10	135123312	135123312	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	10	135123312	135123312	G	A	SNP	ZNF511	ENST00000368554	human	ensembl	74_37	+1	known	missense	c.65	p.C22Y	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	ZNF511	HGNC	ENSG00000198546	tier1	-	-	47	0	0.00	29	4	12.12
CPNE7	0	genome.wustl.edu	37	16	89663123	89663123	+	RNA	SNP	T	T	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	16	89663123	89663123	T	C	SNP	CPNE7	ENST00000564421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CPNE7	HGNC	ENSG00000178773	tier1	-	-	33	0	0.00	37	29	43.94
TBC1D1	0	genome.wustl.edu	37	4	38140081	38140082	+	RNA	INS	-	-	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	4	38140081	38140082	-	A	INS	TBC1D1	ENST00000407365	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TBC1D1	HGNC	ENSG00000065882	tier1			20	0	0.00	19	4	17.39
TPTE2P2	0	genome.wustl.edu	37	13	52793775	52793776	+	RNA	INS	-	-	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	13	52793775	52793776	-	A	INS	TPTE2P2	ENST00000606973	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.003	-	-	-	no_errors	TPTE2P2	HGNC	ENSG00000272281	tier1			21	0	0.00	34	3	8.11
CORIN	0	genome.wustl.edu	37	4	47809025	47809025	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	4	47809025	47809025	A	C	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	missense	c.103	p.S35A	0.982	pirsf_Peptidase_S1A_corin	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244	tier1	-	-	51	0	0.00	41	24	36.92
BBIP1	0	genome.wustl.edu	37	10	112667566	112667566	+	Silent	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	10	112667566	112667566	G	T	SNP	BBIP1	ENST00000454061	human	ensembl	74_37	-1	putative	silent	c.66	p.I22	0.085	NULL	NULL	-	no_errors	BBIP1	HGNC	ENSG00000214413	tier1	-	-	43	0	0.00	26	3	10.34
ITGA6	0	genome.wustl.edu	37	2	173340339	173340339	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	2	173340339	173340339	G	T	SNP	ITGA6	ENST00000264106	human	ensembl	74_37	+1	known	missense	c.1312	p.A438S	1.000	pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409	tier1	-	-	34	0	0.00	45	4	8.00
MYOF	0	genome.wustl.edu	37	10	95139652	95139652	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	10	95139652	95139652	C	T	SNP	MYOF	ENST00000359263	human	ensembl	74_37	-1	known	missense	c.1969	p.V657M	0.995	NULL	pfam_C2_dom,pfam_Ferlin_B-domain,pfam_FerIin-domain,pfam_Ferlin_A-domain,superfamily_C2_dom,smart_C2_dom,smart_Peroxin/Ferlin,pfscan_C2_dom	-	no_errors	MYOF	HGNC	ENSG00000138119	tier1	-	-	35	0	0.00	35	4	10.26
ENSG00000221307	0	genome.wustl.edu	37	12	8476956	8476956	+	RNA	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	12	8476956	8476956	G	A	SNP	ENSG00000221307	ENST00000408380	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.279	-	-	-	no_errors	AC092745.1	Clone_based_ensembl_gene	ENSG00000221307	tier1	-	-	132	1	0.75	125	16	11.35
ABR	0	genome.wustl.edu	37	17	994962	994962	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	17	994962	994962	G	T	SNP	ABR	ENST00000302538	human	ensembl	74_37	-1	known	nonsense	c.474	p.C158*	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RhoGAP_dom,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_DH-domain,superfamily_C2_dom,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,smart_RhoGAP_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom,pfscan_DH-domain	-	no_errors	ABR	HGNC	ENSG00000159842	tier1	-	-	28	0	0.00	32	4	11.11
RRP8	0	genome.wustl.edu	37	11	6621898	6621898	+	Splice_Site	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	11	6621898	6621898	C	T	SNP	RRP8	ENST00000254605	human	ensembl	74_37	-1	known	splice_site	c.1154+1	e5+1	1.000	-	-	-	no_errors	RRP8	HGNC	ENSG00000132275	tier1	-	-	29	0	0.00	39	4	9.30
FAM111B	0	genome.wustl.edu	37	11	58892377	58892377	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	11	58892377	58892377	A	-	DEL	FAM111B	ENST00000343597	human	ensembl	74_37	+1	known	frame_shift_del	c.807	p.K272fs	0.000	NULL	superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111B	HGNC	ENSG00000189057	tier1			24	0	0.00	19	3	13.64
KIAA1731	0	genome.wustl.edu	37	11	93431161	93431161	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	11	93431161	93431161	G	C	SNP	KIAA1731	ENST00000411936	human	ensembl	74_37	+1	known	missense	c.3083	p.G1028A	0.002	NULL	NULL	-	no_errors	KIAA1731	HGNC	ENSG00000166004	tier1	-	-	25	0	0.00	29	8	21.05
ENSG00000233434	0	genome.wustl.edu	37	9	67925159	67925159	+	Silent	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	9	67925159	67925159	G	T	SNP	ENSG00000233434	ENST00000543078	human	ensembl	74_37	-1	novel	silent	c.52	p.R18	0.148	NULL	NULL	-	no_errors	BX649567.1	Clone_based_ensembl_gene	ENSG00000233434	tier1	-	-	64	0	0.00	69	6	8.00
ENSG00000221280	0	genome.wustl.edu	37	12	118604652	118604653	+	RNA	INS	-	-	ACAC			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	12	118604652	118604653	-	ACAC	INS	ENSG00000221280	ENST00000408353	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	AC026366.1	Clone_based_ensembl_gene	ENSG00000221280	tier1			10	0	0.00	8	4	33.33
TAAR6	0	genome.wustl.edu	37	6	132891510	132891510	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	6	132891510	132891510	A	T	SNP	TAAR6	ENST00000275198	human	ensembl	74_37	+1	known	missense	c.50	p.N17I	0.004	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_TAAR_fam	-	no_errors	TAAR6	HGNC	ENSG00000146383	tier1	-	-	58	0	0.00	62	7	10.14
ZNF691	0	genome.wustl.edu	37	1	43316717	43316717	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	1	43316717	43316717	G	A	SNP	ZNF691	ENST00000397044	human	ensembl	74_37	+1	known	missense	c.181	p.G61S	0.011	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF691	HGNC	ENSG00000164011	tier1	-	-	31	0	0.00	24	19	44.19
NINL	0	genome.wustl.edu	37	20	25443278	25443279	+	RNA	INS	-	-	TTTGTTTTGT			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	20	25443278	25443279	-	TTTGTTTTGT	INS	NINL	ENST00000496509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.013	-	-	-	no_errors	NINL	HGNC	ENSG00000101004	tier1			NA	NA	NA	NA	NA	NA
CECR5-AS1	0	genome.wustl.edu	37	22	17646166	17646166	+	RNA	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	22	17646166	17646166	C	T	SNP	CECR5-AS1	ENST00000329743	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CECR5-AS1	HGNC	ENSG00000185837	tier1	-	-	27	0	0.00	35	4	10.26
SYT6	0	genome.wustl.edu	37	1	114682311	114682311	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	1	114682311	114682311	C	A	SNP	SYT6	ENST00000393296	human	ensembl	74_37	-1	known	missense	c.438	p.Q146H	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	SYT6	HGNC	ENSG00000134207	tier1	-	-	36	0	0.00	46	4	8.00
TNC	0	genome.wustl.edu	37	9	117825327	117825327	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	9	117825327	117825327	T	C	SNP	TNC	ENST00000350763	human	ensembl	74_37	-1	known	missense	c.3902	p.N1301S	0.996	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNC	HGNC	ENSG00000041982	tier1	-	-	35	0	0.00	30	30	50.00
TM4SF18	0	genome.wustl.edu	37	3	149051132	149051132	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	3	149051132	149051132	A	-	DEL	TM4SF18	ENST00000296059	human	ensembl	74_37	-1	known	frame_shift_del	c.38	p.L13fs	0.992	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF18	HGNC	ENSG00000163762	tier1			34	0	0.00	32	23	41.82
MIR519A2	0	genome.wustl.edu	37	19	54265614	54265614	+	RNA	SNP	T	T	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	19	54265614	54265614	T	C	SNP	MIR519A2	ENST00000384990	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MIR519A2	HGNC	ENSG00000269842	tier1	-	-	114	0	0.00	76	47	38.21
C12orf45	0	genome.wustl.edu	37	12	105380151	105380151	+	Silent	SNP	C	C	G			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	12	105380151	105380151	C	G	SNP	C12orf45	ENST00000552951	human	ensembl	74_37	+1	known	silent	c.21	p.P7	0.000	NULL	NULL	-	no_errors	C12orf45	HGNC	ENSG00000151131	tier1	-	-	190	0	0.00	83	54	39.42
CCDC14	0	genome.wustl.edu	37	3	123650246	123650246	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	3	123650246	123650246	G	T	SNP	CCDC14	ENST00000488653	human	ensembl	74_37	-1	known	missense	c.1698	p.N566K	1.000	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	tier1	-	-	39	0	0.00	52	6	10.34
ADARB2	0	genome.wustl.edu	37	10	1284348	1284348	+	Nonsense_Mutation	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	10	1284348	1284348	G	A	SNP	ADARB2	ENST00000381312	human	ensembl	74_37	-1	known	nonsense	c.1207	p.Q403*	0.989	smart_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736	tier1	-	-	67	0	0.00	36	5	12.20
NANOG	0	genome.wustl.edu	37	12	7947686	7947686	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	12	7947686	7947686	G	T	SNP	NANOG	ENST00000229307	human	ensembl	74_37	+1	known	missense	c.913	p.V305L	0.090	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	NANOG	HGNC	ENSG00000111704	tier1	-	-	76	0	0.00	54	14	20.59
CDH18	0	genome.wustl.edu	37	5	19473140	19473140	+	RNA	DEL	T	T	-			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	5	19473140	19473140	T	-	DEL	CDH18	ENST00000510297	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CDH18	HGNC	ENSG00000145526	tier1			9	0	0.00	5	5	50.00
RYR2	0	genome.wustl.edu	37	1	237947932	237947932	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	1	237947932	237947932	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.12938	p.R4313H	0.017	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	tier1	-	-	28	0	0.00	41	13	24.07
TULP3	0	genome.wustl.edu	37	12	3031436	3031436	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	12	3031436	3031436	G	T	SNP	TULP3	ENST00000448120	human	ensembl	74_37	+1	known	missense	c.262	p.G88C	1.000	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP3	HGNC	ENSG00000078246	tier1	-	-	62	0	0.00	30	13	30.23
NPY2R	0	genome.wustl.edu	37	4	156135160	156135160	+	Silent	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	4	156135160	156135160	G	T	SNP	NPY2R	ENST00000329476	human	ensembl	74_37	+1	known	silent	c.69	p.G23	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY2_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NPFF_rcpt	-	no_errors	NPY2R	HGNC	ENSG00000185149	tier1	-	-	33	0	0.00	46	5	9.80
FAM129C	0	genome.wustl.edu	37	19	17654235	17654235	+	Missense_Mutation	SNP	T	T	G			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	19	17654235	17654235	T	G	SNP	FAM129C	ENST00000335393	human	ensembl	74_37	+1	known	missense	c.1532	p.V511G	0.999	NULL	smart_Pleckstrin_homology	-	no_errors	FAM129C	HGNC	ENSG00000167483	tier1	-	-	91	0	0.00	101	9	8.18
TP53	0	genome.wustl.edu	37	17	7578555	7578555	+	Splice_Site	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	17	7578555	7578555	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.376-1	e4-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	17	0	0.00	5	14	73.68
GPR156	0	genome.wustl.edu	37	3	119886364	119886364	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	3	119886364	119886364	C	T	SNP	GPR156	ENST00000315843	human	ensembl	74_37	-1	known	missense	c.1960	p.V654I	0.000	NULL	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GPR156	HGNC	ENSG00000175697	tier1	-	-	40	0	0.00	43	11	20.37
ERVW-1	0	genome.wustl.edu	37	7	92099781	92099781	+	RNA	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	7	92099781	92099781	G	A	SNP	ERVW-1	ENST00000604270	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.220	-	-	-	no_errors	ERVW-1	HGNC	ENSG00000242950	tier1	-	-	24	0	0.00	11	16	59.26
ZNF594	0	genome.wustl.edu	37	17	5087237	5087237	+	Silent	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	17	5087237	5087237	G	T	SNP	ZNF594	ENST00000399604	human	ensembl	74_37	-1	known	silent	c.315	p.G105	0.756	smart_Znf_C2H2-like	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF594	HGNC	ENSG00000180626	tier1	-	-	34	0	0.00	32	4	11.11
CTAG2	0	genome.wustl.edu	37	X	153881533	153881533	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	X	153881533	153881533	C	T	SNP	CTAG2	ENST00000369585	human	ensembl	74_37	-1	known	missense	c.257	p.R86H	0.000	NULL	pfam_EKC/KEOPS_Pcc1	-	no_errors	CTAG2	HGNC	ENSG00000126890	tier1	-	-	22	0	0.00	21	12	36.36
PYGB	0	genome.wustl.edu	37	20	25260953	25260953	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	20	25260953	25260953	C	T	SNP	PYGB	ENST00000216962	human	ensembl	74_37	+1	known	missense	c.1144	p.P382S	1.000	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	pfam_Glyco_trans_35,pirsf_Glyco_trans_35,tigrfam_Glycg_phsphrylas	-	no_errors	PYGB	HGNC	ENSG00000100994	tier1	-	-	38	0	0.00	42	4	8.70
WSCD2	0	genome.wustl.edu	37	12	108589816	108589816	+	Silent	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	12	108589816	108589816	C	T	SNP	WSCD2	ENST00000261400	human	ensembl	74_37	+1	known	silent	c.207	p.D69	0.016	NULL	pfam_WSC_carb-bd,superfamily_P-loop_NTPase,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd	-	no_errors	WSCD2	HGNC	ENSG00000075035	tier1	-	-	32	0	0.00	35	11	23.91
GPR113	0	genome.wustl.edu	37	2	26539786	26539786	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	2	26539786	26539786	T	C	SNP	GPR113	ENST00000333478	human	ensembl	74_37	-1	known	missense	c.319	p.T107A	0.295	NULL	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR113	HGNC	ENSG00000173567	tier1	-	-	39	0	0.00	24	19	44.19
HMGXB4	0	genome.wustl.edu	37	22	35661544	35661544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	22	35661544	35661544	A	-	DEL	HMGXB4	ENST00000216106	human	ensembl	74_37	+1	known	frame_shift_del	c.1163	p.K391fs	1.000	superfamily_HMG_box_dom	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	HMGXB4	HGNC	ENSG00000100281	tier1			33	0	0.00	29	3	9.38
C16orf62	0	genome.wustl.edu	37	16	19584522	19584522	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	16	19584522	19584522	G	T	SNP	C16orf62	ENST00000438132	human	ensembl	74_37	+1	known	nonsense	c.634	p.E212*	1.000	NULL	NULL	-	no_errors	C16orf62	HGNC	ENSG00000103544	tier1	-	-	42	0	0.00	25	23	47.92
LILRB1	0	genome.wustl.edu	37	19	55144624	55144624	+	Silent	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	19	55144624	55144624	G	A	SNP	LILRB1	ENST00000324602	human	ensembl	74_37	+1	known	silent	c.1116	p.T372	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB1	HGNC	ENSG00000104972	tier1	-	-	62	0	0.00	34	24	41.38
SLC16A9	0	genome.wustl.edu	37	10	61413832	61413832	+	Missense_Mutation	SNP	T	T	G			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	10	61413832	61413832	T	G	SNP	SLC16A9	ENST00000395347	human	ensembl	74_37	-1	known	missense	c.952	p.I318L	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A9	HGNC	ENSG00000165449	tier1	-	-	27	0	0.00	7	15	68.18
NLRP9	0	genome.wustl.edu	37	19	56241270	56241270	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	19	56241270	56241270	T	C	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.1921	p.S641G	0.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	tier1	-	-	41	0	0.00	28	5	15.15
SLC6A17	0	genome.wustl.edu	37	1	110714757	110714757	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	1	110714757	110714757	G	T	SNP	SLC6A17	ENST00000331565	human	ensembl	74_37	+1	known	missense	c.362	p.G121V	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A17	HGNC	ENSG00000197106	tier1	-	-	51	0	0.00	29	4	12.12
COG7	0	genome.wustl.edu	37	16	23430054	23430054	+	Silent	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	16	23430054	23430054	G	A	SNP	COG7	ENST00000307149	human	ensembl	74_37	-1	known	silent	c.1104	p.S368	0.000	pfam_COG7	pfam_COG7	-	no_errors	COG7	HGNC	ENSG00000168434	tier1	-	-	22	0	0.00	22	4	15.38
POLA1	0	genome.wustl.edu	37	X	24760226	24760226	+	Silent	SNP	T	T	C			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	X	24760226	24760226	T	C	SNP	POLA1	ENST00000379068	human	ensembl	74_37	+1	known	silent	c.2454	p.P818	1.000	pfam_DNA-dir_DNA_pol_B_multi_dom,smart_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	tier1	-	-	226	0	0.00	232	22	8.66
ENSG00000221279	0	genome.wustl.edu	37	7	110568408	110568413	+	RNA	DEL	CACACA	CACACA	-			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	CACACA	CACACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	7	110568408	110568413	CACACA	-	DEL	ENSG00000221279	ENST00000408352	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.003:0.009:0.052:0.060:0.063	-	-	-	no_errors	AC005161.1	Clone_based_ensembl_gene	ENSG00000221279	tier1			NA	NA	NA	NA	NA	NA
RALGAPB	0	genome.wustl.edu	37	20	37137749	37137749	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	20	37137749	37137749	T	A	SNP	RALGAPB	ENST00000262879	human	ensembl	74_37	+1	known	missense	c.770	p.F257Y	1.000	NULL	superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPB	HGNC	ENSG00000170471	tier1	-	-	86	0	0.00	71	20	21.98
FANK1	0	genome.wustl.edu	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	10	127585221	127585221	C	T	SNP	FANK1	ENST00000368693	human	ensembl	74_37	+1	known	nonsense	c.10	p.Q4*	0.999	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Fibronectin_type3,prints_Ankyrin_rpt	-	no_errors	FANK1	HGNC	ENSG00000203780	tier1	rs202109621	-	107	0	0.00	92	9	8.91
CASP5	0	genome.wustl.edu	37	11	104878040	104878041	+	Frame_Shift_Ins	INS	-	-	T			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	11	104878040	104878041	-	T	INS	CASP5	ENST00000393141	human	ensembl	74_37	-1	known	frame_shift_ins	c.242_241	p.T81fs	0.000:0.000	pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,pirsf_Caspase_IL-1_beta,pfscan_CARD	pfam_Pept_C14_caspase,pfam_CARD,superfamily_DEATH-like_dom,smart_CARD,smart_Pept_C14A_p45_core,pirsf_Caspase_IL-1_beta,pfscan_CARD,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14A_p45_core	-	no_errors	CASP5	HGNC	ENSG00000137757	tier1			31	0	0.00	44	7	13.73
RABGAP1L	0	genome.wustl.edu	37	1	174200309	174200309	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	1	174200309	174200309	C	A	SNP	RABGAP1L	ENST00000251507	human	ensembl	74_37	+1	known	missense	c.358	p.P120T	1.000	NULL	pfam_Rab-GTPase-TBC_dom,pfam_Kinesin-like,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1L	HGNC	ENSG00000152061	tier1	-	-	21	0	0.00	29	14	32.56
MUC17	0	genome.wustl.edu	37	7	100677255	100677255	+	Frame_Shift_Del	DEL	C	C	-			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	7	100677255	100677255	C	-	DEL	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	frame_shift_del	c.2558	p.S854fs	0.001	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876	tier1			54	0	0.00	56	34	37.78
KIAA0754	0	genome.wustl.edu	37	1	39877426	39877426	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HP-01A-11D-A387-09	TCGA-3B-A9HP-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	bd65431f-eb47-461e-bf3f-5bcbe231c50d	d674737f-2b83-480d-9de2-ee333824475e	1	39877426	39877426	G	A	SNP	KIAA0754	ENST00000530275	human	ensembl	74_37	+1	known	missense	c.1081	p.A361T	0.062	NULL	NULL	-	no_errors	KIAA0754	HGNC	ENSG00000255103	tier1	-	-	28	0	0.00	32	4	11.11
