Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000188971	0	genome.wustl.edu	37	2	69693504	69693504	+	RNA	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	2	69693504	69693504	G	T	SNP	ENSG00000188971	ENST00000339092	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-427H3.3	Clone_based_vega_gene	ENSG00000188971	tier1	-	-	35	0	0.00	29	3	9.38
TP63	0	genome.wustl.edu	37	3	189604233	189604233	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	3	189604233	189604233	A	G	SNP	TP63	ENST00000264731	human	ensembl	74_37	+1	known	missense	c.1400	p.N467S	1.000	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_SAM_2,superfamily_p53-like_TF_DNA-bd,superfamily_SAM/pointed,superfamily_p53_tetrameristn,smart_SAM,prints_p53_tumour_suppressor	-	no_errors	TP63	HGNC	ENSG00000073282	tier1	-	-	104	0	0.00	84	13	13.27
SERPINB6	0	genome.wustl.edu	37	6	2948672	2948672	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	6	2948672	2948672	C	T	SNP	SERPINB6	ENST00000335686	human	ensembl	74_37	-1	known	missense	c.991	p.A331T	0.903	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB6	HGNC	ENSG00000124570	tier1	-	-	35	0	0.00	35	5	12.50
ST3GAL5	0	genome.wustl.edu	37	2	86090503	86090503	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	2	86090503	86090503	A	G	SNP	ST3GAL5	ENST00000377332	human	ensembl	74_37	-1	known	missense	c.188	p.L63S	0.979	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST3GAL5	HGNC	ENSG00000115525	tier1	-	-	116	0	0.00	78	44	35.77
EXOC3L1	0	genome.wustl.edu	37	16	67220479	67220479	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	16	67220479	67220479	G	T	SNP	EXOC3L1	ENST00000314586	human	ensembl	74_37	-1	known	missense	c.1366	p.L456M	1.000	pfam_Sec6	pfam_Sec6	-	no_errors	EXOC3L1	HGNC	ENSG00000179044	tier1	-	-	46	0	0.00	45	4	8.00
TDRD7	0	genome.wustl.edu	37	9	100235889	100235889	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	9	100235889	100235889	A	G	SNP	TDRD7	ENST00000355295	human	ensembl	74_37	+1	known	missense	c.2060	p.E687G	1.000	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD7	HGNC	ENSG00000196116	tier1	-	-	77	0	0.00	87	20	18.69
DMTF1	0	genome.wustl.edu	37	7	86783765	86783765	+	RNA	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	7	86783765	86783765	G	T	SNP	DMTF1	ENST00000580710	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DMTF1	HGNC	ENSG00000135164	tier1	-	-	59	0	0.00	43	4	8.51
CORO7-PAM16	0	genome.wustl.edu	37	16	4411430	4411430	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	16	4411430	4411430	G	A	SNP	CORO7-PAM16	ENST00000572467	human	ensembl	74_37	-1	known	missense	c.1619	p.T540M	1.000	smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_DUF1900,pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	CORO7-PAM16	HGNC	ENSG00000103426	tier1	rs200682379	GMAF=0.0005	133	0	0.00	75	40	34.78
ZNF174	0	genome.wustl.edu	37	16	3458760	3458760	+	Silent	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	16	3458760	3458760	G	T	SNP	ZNF174	ENST00000268655	human	ensembl	74_37	+1	known	silent	c.1065	p.T355	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF174	HGNC	ENSG00000103343	tier1	-	-	40	0	0.00	40	4	9.09
SLC35G1	0	genome.wustl.edu	37	10	95658334	95658334	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	10	95658334	95658334	A	G	SNP	SLC35G1	ENST00000427197	human	ensembl	74_37	+1	known	missense	c.185	p.K62R	1.000	NULL	pfam_DMT	-	no_errors	SLC35G1	HGNC	ENSG00000176273	tier1	-	-	66	0	0.00	29	16	35.56
TRAK2	0	genome.wustl.edu	37	2	202284069	202284069	+	RNA	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	2	202284069	202284069	G	A	SNP	TRAK2	ENST00000451703	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.450	-	-	-	no_errors	TRAK2	HGNC	ENSG00000115993	tier1	-	-	42	0	0.00	42	4	8.70
BPIFC	0	genome.wustl.edu	37	22	32843215	32843215	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	22	32843215	32843215	A	T	SNP	BPIFC	ENST00000300399	human	ensembl	74_37	-1	known	missense	c.358	p.F120I	0.001	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFC	HGNC	ENSG00000184459	tier1	-	-	91	0	0.00	56	33	37.08
C20orf112	0	genome.wustl.edu	37	20	31099150	31099150	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	20	31099150	31099150	C	G	SNP	C20orf112	ENST00000201961	human	ensembl	74_37	-1	known	missense	c.417	p.Q139H	1.000	NULL	NULL	-	no_errors	C20orf112	HGNC	ENSG00000197183	tier1	-	-	81	0	0.00	61	19	23.75
PRH2	0	genome.wustl.edu	37	12	11082885	11082885	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	12	11082885	11082885	G	A	SNP	PRH2	ENST00000381847	human	ensembl	74_37	+1	known	missense	c.82	p.V28I	0.000	NULL	NULL	-	no_errors	PRH2	HGNC	ENSG00000134551	tier1	-	-	77	0	0.00	40	13	24.53
ANP32BP1	0	genome.wustl.edu	37	15	75614908	75614908	+	RNA	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	15	75614908	75614908	G	A	SNP	ANP32BP1	ENST00000564205	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.170	-	-	-	no_errors	ANP32BP1	HGNC	ENSG00000259790	tier1	-	-	69	0	0.00	54	16	22.86
KLHDC7B	0	genome.wustl.edu	37	22	50986680	50986680	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	22	50986680	50986680	C	T	SNP	KLHDC7B	ENST00000395676	human	ensembl	74_37	+1	known	missense	c.85	p.P29S	0.004	NULL	pfam_Kelch_1,smart_Kelch_1	-	no_errors	KLHDC7B	HGNC	ENSG00000130487	tier1	-	-	88	0	0.00	58	26	30.95
ZNF607	0	genome.wustl.edu	37	19	38189646	38189646	+	Silent	SNP	T	T	C			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	19	38189646	38189646	T	C	SNP	ZNF607	ENST00000355202	human	ensembl	74_37	-1	known	silent	c.1386	p.S462	0.053	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF607	HGNC	ENSG00000198182	tier1	-	-	76	0	0.00	74	24	24.49
CEP290	0	genome.wustl.edu	37	12	88496697	88496697	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	12	88496697	88496697	T	C	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.2915	p.N972S	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	tier1	-	-	88	0	0.00	51	25	32.89
BCHE	0	genome.wustl.edu	37	3	165548792	165548792	+	Silent	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	3	165548792	165548792	G	T	SNP	BCHE	ENST00000264381	human	ensembl	74_37	-1	known	silent	c.30	p.I10	0.000	NULL	pfam_CarbesteraseB,pfam_AChE_tetra,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	BCHE	HGNC	ENSG00000114200	tier1	-	-	52	0	0.00	33	4	10.81
ESPNP	0	genome.wustl.edu	37	1	17026022	17026024	+	RNA	DEL	GGC	GGC	-			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	GGC	GGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	1	17026022	17026024	GGC	-	DEL	ESPNP	ENST00000492551	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:0.992	-	-	-	no_errors	ESPNP	HGNC	ENSG00000268869	tier1			19	0	0.00	21	2	8.70
ENSG00000262903	0	genome.wustl.edu	37	17	3560153	3560153	+	RNA	SNP	T	T	C			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	17	3560153	3560153	T	C	SNP	ENSG00000262903	ENST00000575741	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-235E17.6	Clone_based_vega_gene	ENSG00000262903	tier1	-	-	37	0	0.00	11	17	60.71
GBA	0	genome.wustl.edu	37	1	155206233	155206233	+	Missense_Mutation	SNP	A	A	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	1	155206233	155206233	A	T	SNP	GBA	ENST00000327247	human	ensembl	74_37	-1	known	missense	c.1027	p.Y343N	0.998	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_30,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_30	-	no_errors	GBA	HGNC	ENSG00000177628	tier1	-	-	113	0	0.00	63	27	30.00
TSNAX	0	genome.wustl.edu	37	1	231700641	231700641	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	1	231700641	231700641	G	A	SNP	TSNAX	ENST00000366639	human	ensembl	74_37	+1	known	missense	c.863	p.G288D	1.000	NULL	pfam_Translin,superfamily_Translin	-	no_errors	TSNAX	HGNC	ENSG00000116918	tier1	-	-	47	0	0.00	45	4	8.16
DNM1P34	0	genome.wustl.edu	37	15	75594814	75594814	+	RNA	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	15	75594814	75594814	G	A	SNP	DNM1P34	ENST00000567292	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	DNM1P34	HGNC	ENSG00000260357	tier1	-	-	177	0	0.00	124	60	32.61
GATA3	0	genome.wustl.edu	37	10	8105992	8105992	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	10	8105992	8105992	C	A	SNP	GATA3	ENST00000379328	human	ensembl	74_37	+1	known	missense	c.815	p.T272N	1.000	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	tier1	-	-	98	0	0.00	25	24	48.98
SDF4	0	genome.wustl.edu	37	1	1164253	1164255	+	RNA	DEL	ATC	ATC	-			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	ATC	ATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	1	1164253	1164255	ATC	-	DEL	SDF4	ENST00000459994	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.000:0.000	-	-	-	no_errors	SDF4	HGNC	ENSG00000078808	tier1			18	0	0.00	7	2	22.22
F2R	0	genome.wustl.edu	37	5	76028937	76028937	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	5	76028937	76028937	G	T	SNP	F2R	ENST00000319211	human	ensembl	74_37	+1	known	missense	c.887	p.C296F	0.757	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thrmbn_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Thrmbn_rcpt,prints_GPCR_Rhodpsn,prints_Protea_act_rcpt	-	no_errors	F2R	HGNC	ENSG00000181104	tier1	-	-	57	0	0.00	59	27	31.40
OR6C1	0	genome.wustl.edu	37	12	55714741	55714741	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	12	55714741	55714741	C	T	SNP	OR6C1	ENST00000379668	human	ensembl	74_37	+1	known	missense	c.358	p.R120C	1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C1	HGNC	ENSG00000205330	tier1	rs143845104	-	92	0	0.00	63	32	33.68
ACO2	0	genome.wustl.edu	37	22	41916174	41916174	+	Splice_Site	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	22	41916174	41916174	G	T	SNP	ACO2	ENST00000216254	human	ensembl	74_37	+1	known	splice_site	c.1033-1	e9-1	1.000	-	-	-	no_errors	ACO2	HGNC	ENSG00000100412	tier1	-	-	55	0	0.00	45	4	8.16
XRRA1	0	genome.wustl.edu	37	11	74656098	74656099	+	RNA	INS	-	-	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	11	74656098	74656099	-	T	INS	XRRA1	ENST00000524430	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.997:0.998	-	-	-	no_errors	XRRA1	HGNC	ENSG00000166435	tier1			42	0	0.00	26	4	13.33
TCIRG1	0	genome.wustl.edu	37	11	67818126	67818126	+	Silent	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	11	67818126	67818126	G	A	SNP	TCIRG1	ENST00000265686	human	ensembl	74_37	+1	known	silent	c.2409	p.L803	1.000	pfam_V-ATPase_116kDa_su	pfam_V-ATPase_116kDa_su	-	no_errors	TCIRG1	HGNC	ENSG00000110719	tier1	-	-	85	0	0.00	45	4	8.16
PODXL2	0	genome.wustl.edu	37	3	127379364	127379369	+	In_Frame_Del	DEL	GAAGAG	GAAGAG	-			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	GAAGAG	GAAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	3	127379364	127379369	GAAGAG	-	DEL	PODXL2	ENST00000342480	human	ensembl	74_37	+1	known	in_frame_del	c.493_498	p.EE168in_frame_del	0.461:0.426:0.115:0.869:0.885:0.889	NULL	pfam_CD34/Podocalyxin	-	no_errors	PODXL2	HGNC	ENSG00000114631	tier1			NA	NA	NA	NA	NA	NA
CNN2	0	genome.wustl.edu	37	19	1036080	1036080	+	Silent	SNP	G	G	C			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	19	1036080	1036080	G	C	SNP	CNN2	ENST00000562958	human	ensembl	74_37	+1	novel	silent	c.405	p.G135	0.002	superfamily_CH-domain	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN2	HGNC	ENSG00000064666	tier1	-	-	64	0	0.00	66	12	15.19
PTGES	0	genome.wustl.edu	37	9	132501706	132501707	+	RNA	INS	-	-	ACACAT			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	9	132501706	132501707	-	ACACAT	INS	PTGES	ENST00000481476	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PTGES	HGNC	ENSG00000148344	tier1			NA	NA	NA	NA	NA	NA
TJP1	0	genome.wustl.edu	37	15	29996494	29996494	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	15	29996494	29996494	C	G	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	missense	c.5084	p.S1695T	1.000	pfam_ZU5,smart_ZU5,pfscan_ZU5	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	tier1	-	-	49	0	0.00	49	8	14.04
FGF5	0	genome.wustl.edu	37	4	81209881	81209881	+	RNA	SNP	A	A	G			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	4	81209881	81209881	A	G	SNP	FGF5	ENST00000503413	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	FGF5	HGNC	ENSG00000138675	tier1	-	-	24	0	0.00	13	8	38.10
TNRC18	0	genome.wustl.edu	37	7	5430009	5430011	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	7	5430009	5430011	AAG	-	DEL	TNRC18	ENST00000399434	human	ensembl	74_37	-1	putative	in_frame_del	c.372_370	p.L124in_frame_del	0.694:0.670:0.633	NULL	NULL	-	no_errors	TNRC18	HGNC	ENSG00000182095	tier1			29	0	0.00	32	4	11.11
MUC17	0	genome.wustl.edu	37	7	100677114	100677114	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	7	100677114	100677114	C	A	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.2417	p.P806H	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876	tier1	-	-	110	0	0.00	77	32	29.36
KIAA1211	0	genome.wustl.edu	37	4	57180682	57180682	+	Silent	SNP	C	C	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	4	57180682	57180682	C	T	SNP	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	silent	c.1014	p.D338	0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	tier1	-	-	37	0	0.00	17	5	21.74
C1orf173	0	genome.wustl.edu	37	1	75037267	75037267	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	1	75037267	75037267	G	C	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.4127	p.S1376C	0.005	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	tier1	-	-	34	0	0.00	24	15	37.50
SCAND3	0	genome.wustl.edu	37	6	28543139	28543139	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	6	28543139	28543139	C	T	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.1343	p.S448N	0.954	pfam_Integrase_cat-core,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	tier1	-	-	50	0	0.00	40	4	9.09
CTNNA2	0	genome.wustl.edu	37	2	80816439	80816439	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	2	80816439	80816439	C	T	SNP	CTNNA2	ENST00000361291	human	ensembl	74_37	+1	known	missense	c.2120	p.A707V	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC	ENSG00000066032	tier1	-	-	103	0	0.00	33	21	38.89
DIP2A	0	genome.wustl.edu	37	21	47924314	47924314	+	Silent	SNP	G	G	C			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	21	47924314	47924314	G	C	SNP	DIP2A	ENST00000318711	human	ensembl	74_37	+1	known	silent	c.699	p.V233	0.036	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2A	HGNC	ENSG00000160305	tier1	-	-	85	0	0.00	82	22	21.15
PRMT2	0	genome.wustl.edu	37	21	48083368	48083368	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	21	48083368	48083368	G	A	SNP	PRMT2	ENST00000355680	human	ensembl	74_37	+1	known	missense	c.1171	p.G391S	0.995	pfam_Arg_MeTrfase	pfam_SH3_domain,pfam_Arg_MeTrfase,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310	tier1	-	-	41	0	0.00	37	18	32.73
MMP2	0	genome.wustl.edu	37	16	55519559	55519559	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	16	55519559	55519559	G	T	SNP	MMP2	ENST00000219070	human	ensembl	74_37	+1	known	missense	c.702	p.K234N	1.000	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_Pept_M10_metallopeptidase,pfam_FN_type2_col-bd,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Kringle-like,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_FN_type2_col-bd,smart_Hemopexin-like_repeat,pfscan_FN_type2_col-bd,prints_Pept_M10A	-	no_errors	MMP2	HGNC	ENSG00000087245	tier1	-	-	77	0	0.00	42	4	8.70
ATF6B	0	genome.wustl.edu	37	6	32095994	32095994	+	RNA	SNP	C	C	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	6	32095994	32095994	C	T	SNP	ATF6B	ENST00000468502	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ATF6B	HGNC	ENSG00000213676	tier1	-	-	69	0	0.00	76	20	20.83
LOC100507002	0	genome.wustl.edu	37	17	63097118	63097118	+	RNA	SNP	C	C	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	17	63097118	63097118	C	A	SNP	LOC100507002	ENST00000582940	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	RP11-160O5.1	Clone_based_vega_gene	ENSG00000263470	tier1	-	-	45	0	0.00	9	7	43.75
MRPL42	0	genome.wustl.edu	37	12	93894747	93894748	+	RNA	INS	-	-	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	12	93894747	93894748	-	A	INS	MRPL42	ENST00000552938	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002:0.008	-	-	-	no_errors	MRPL42	HGNC	ENSG00000198015	tier1			12	0	0.00	12	3	20.00
GCC1	0	genome.wustl.edu	37	7	127231635	127231636	+	RNA	INS	-	-	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	7	127231635	127231636	-	T	INS	GCC1	ENST00000473728	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.929:0.928	-	-	-	no_errors	GCC1	HGNC	ENSG00000179562	tier1			39	0	0.00	37	6	13.95
NPAS3	0	genome.wustl.edu	37	14	34269971	34269971	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	14	34269971	34269971	G	A	SNP	NPAS3	ENST00000356141	human	ensembl	74_37	+1	known	missense	c.2458	p.A820T	0.998	NULL	pfam_PAS_fold_3,pfam_PAS_fold,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NPAS3	HGNC	ENSG00000151322	tier1	-	-	22	0	0.00	21	5	19.23
HINFP	0	genome.wustl.edu	37	11	119005179	119005179	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	11	119005179	119005179	G	T	SNP	HINFP	ENST00000350777	human	ensembl	74_37	+1	known	missense	c.1525	p.A509S	0.875	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HINFP	HGNC	ENSG00000172273	tier1	-	-	39	0	0.00	19	3	13.64
FOXJ2	0	genome.wustl.edu	37	12	8205396	8205396	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	12	8205396	8205396	G	A	SNP	FOXJ2	ENST00000162391	human	ensembl	74_37	+1	known	missense	c.1675	p.G559S	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	tier1	-	-	35	0	0.00	19	4	17.39
MAP1S	0	genome.wustl.edu	37	19	17838873	17838873	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	19	17838873	17838873	C	T	SNP	MAP1S	ENST00000324096	human	ensembl	74_37	+1	known	missense	c.2680	p.R894C	0.070	NULL	NULL	-	no_errors	MAP1S	HGNC	ENSG00000130479	tier1	-	-	63	0	0.00	107	19	15.08
TTLL11	0	genome.wustl.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	9	124855330	124855331	-	TGGCCT	INS	TTLL11	ENST00000321582	human	ensembl	74_37	-1	known	in_frame_ins	c.368_367	p.123in_frame_insKA	0.000:0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL11	HGNC	ENSG00000175764	tier1			NA	NA	NA	NA	NA	NA
PLEKHG5	0	genome.wustl.edu	37	1	6529183	6529188	+	In_Frame_Del	DEL	TCCTCC	TCCTCC	-			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	TCCTCC	TCCTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	1	6529183	6529188	TCCTCC	-	DEL	PLEKHG5	ENST00000537245	human	ensembl	74_37	-1	known	in_frame_del	c.2405_2400	p.EE801in_frame_del	0.152:0.271:0.391:0.513:0.634:0.754	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG5	HGNC	ENSG00000171680	tier1			NA	NA	NA	NA	NA	NA
DIS3L2	0	genome.wustl.edu	37	2	232995569	232995570	+	RNA	INS	-	-	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	2	232995569	232995570	-	A	INS	DIS3L2	ENST00000470087	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DIS3L2	HGNC	ENSG00000144535	tier1			22	0	0.00	11	4	26.67
EOMES	0	genome.wustl.edu	37	3	27763427	27763428	+	In_Frame_Ins	INS	-	-	CGGCGC			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	3	27763427	27763428	-	CGGCGC	INS	EOMES	ENST00000449599	human	ensembl	74_37	-1	known	in_frame_ins	c.359_358	p.120in_frame_insGA	0.116:0.075	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	EOMES	HGNC	ENSG00000163508	tier1			NA	NA	NA	NA	NA	NA
ROBO3	0	genome.wustl.edu	37	11	124750448	124750453	+	In_Frame_Del	DEL	CGGAGT	CGGAGT	-			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	CGGAGT	CGGAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	11	124750448	124750453	CGGAGT	-	DEL	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	in_frame_del	c.4093_4098	p.RS1367in_frame_del	1.000:1.000:0.988:0.987:1.000:0.999	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134	tier1			NA	NA	NA	NA	NA	NA
ENSG00000253389	0	genome.wustl.edu	37	8	41519192	41519192	+	RNA	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	8	41519192	41519192	G	T	SNP	ENSG00000253389	ENST00000520418	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.016	-	-	-	no_errors	RP11-930P14.1	Clone_based_vega_gene	ENSG00000253389	tier1	-	-	27	0	0.00	13	3	18.75
ASF1A	0	genome.wustl.edu	37	6	119222020	119222020	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	6	119222020	119222020	G	A	SNP	ASF1A	ENST00000229595	human	ensembl	74_37	+1	known	missense	c.199	p.A67T	1.000	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	pfam_Histone_chaperone_ASF1-like,superfamily_Histone_chaperone_ASF1-like	-	no_errors	ASF1A	HGNC	ENSG00000111875	tier1	-	-	69	0	0.00	42	4	8.70
RBM39	0	genome.wustl.edu	37	20	34292643	34292643	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	20	34292643	34292643	G	T	SNP	RBM39	ENST00000253363	human	ensembl	74_37	-1	known	nonsense	c.1439	p.S480*	1.000	smart_RRM_dom_euk,smart_RRM_dom,tigrfam_CC1_SF	pfam_RRM_dom,smart_RRM_dom,smart_RRM_dom_euk,pfscan_RRM_dom,tigrfam_CC1_SF	-	no_errors	RBM39	HGNC	ENSG00000131051	tier1	-	-	24	0	0.00	15	3	16.67
FCRL5	0	genome.wustl.edu	37	1	157491063	157491063	+	Silent	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	1	157491063	157491063	G	T	SNP	FCRL5	ENST00000356953	human	ensembl	74_37	-1	known	silent	c.2259	p.V753	0.916	pfscan_Ig-like_dom	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL5	HGNC	ENSG00000143297	tier1	-	-	39	0	0.00	43	4	8.51
IGDCC4	0	genome.wustl.edu	37	15	65674744	65674744	+	RNA	SNP	T	T	A			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	15	65674744	65674744	T	A	SNP	IGDCC4	ENST00000558048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	IGDCC4	HGNC	ENSG00000103742	tier1	-	-	56	0	0.00	72	9	11.11
LINC00615	0	genome.wustl.edu	37	12	91340253	91340253	+	RNA	DEL	T	T	-			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	12	91340253	91340253	T	-	DEL	LINC00615	ENST00000546725	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.148	-	-	-	no_errors	LINC00615	HGNC	ENSG00000196243	tier1			39	0	0.00	46	8	14.81
SLCO1B1	0	genome.wustl.edu	37	12	21331641	21331641	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	12	21331641	21331641	T	C	SNP	SLCO1B1	ENST00000256958	human	ensembl	74_37	+1	known	missense	c.613	p.S205P	0.090	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B1	HGNC	ENSG00000134538	tier1	-	-	101	0	0.00	72	8	10.00
MCM3	0	genome.wustl.edu	37	6	52141140	52141140	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	6	52141140	52141140	C	T	SNP	MCM3	ENST00000596288	human	ensembl	74_37	-1	known	missense	c.1435	p.A479T	1.000	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_Mcm3	-	no_errors	MCM3	HGNC	ENSG00000112118	tier1	rs188062670	GMAF=0	47	0	0.00	40	4	9.09
CELSR2	0	genome.wustl.edu	37	1	109803769	109803769	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	1	109803769	109803769	G	T	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.4064	p.C1355F	1.000	superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	tier1	-	-	70	0	0.00	45	4	8.16
CORIN	0	genome.wustl.edu	37	4	47645273	47645273	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	4	47645273	47645273	G	T	SNP	CORIN	ENST00000273857	human	ensembl	74_37	-1	known	nonsense	c.1958	p.S653*	1.000	pirsf_Peptidase_S1A_corin,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pirsf_Peptidase_S1A_corin,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_Frizzled_dom,superfamily_Trypsin-like_Pept_dom,superfamily_Frizzled_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_Frizzled_dom,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_Frizzled_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	CORIN	HGNC	ENSG00000145244	tier1	-	-	62	0	0.00	34	4	10.53
PDE4DIP	0	genome.wustl.edu	37	1	144856959	144856959	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	1	144856959	144856959	G	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.6526	p.H2176N	0.985	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	tier1	-	-	525	0	0.00	410	62	13.11
TESK1	0	genome.wustl.edu	37	9	35607308	35607309	+	RNA	DEL	TG	TG	-			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	9	35607308	35607309	TG	-	DEL	TESK1	ENST00000463897	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	TESK1	HGNC	ENSG00000107140	tier1			36	0	0.00	24	3	11.11
CRIM1	0	genome.wustl.edu	37	2	36583692	36583692	+	Frame_Shift_Del	DEL	G	G	-			TCGA-3B-A9HR-01A-11D-A387-09	TCGA-3B-A9HR-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4355e545-4c5a-46c9-9bfa-a862afc22ae2	f3905e19-7e5a-43f6-8bd5-778ea63193c5	2	36583692	36583692	G	-	DEL	CRIM1	ENST00000280527	human	ensembl	74_37	+1	known	frame_shift_del	c.257	p.L88fs	1.000	smart_IGFBP-like	pfam_VWF_C,pfam_Antistasin-like,superfamily_Hirudin/antistatin,smart_IGFBP-like,smart_VWC_out,smart_VWF_C,pfscan_VWF_C	-	no_errors	CRIM1	HGNC	ENSG00000150938	tier1			50	0	0.00	42	4	8.70
