Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
OBSCN	0	genome.wustl.edu	37	1	228560353	228560353	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	1	228560353	228560353	G	C	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.21874	p.A7292P	0.020	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	168	0	0.00	88	8	8.33
RPA3-AS1	0	genome.wustl.edu	37	7	7712942	7712950	+	RNA	DEL	AGCAGCAGC	AGCAGCAGC	-			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	AGCAGCAGC	AGCAGCAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	7	7712942	7712950	AGCAGCAGC	-	DEL	RPA3-AS1	ENST00000463725	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.000:0.000:0.000:0.000:0.008:0.006:0.005:0.005	-	-	-	no_errors	RPA3-AS1	HGNC	ENSG00000219545	tier1			NA	NA	NA	NA	NA	NA
VMO1	0	genome.wustl.edu	37	17	4688713	4688713	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	17	4688713	4688713	C	T	SNP	VMO1	ENST00000328739	human	ensembl	74_37	-1	known	missense	c.553	p.G185S	0.044	pfam_VOMI,superfamily_VOMI	pfam_VOMI,superfamily_VOMI	-	no_errors	VMO1	HGNC	ENSG00000182853	tier1	-	-	132	0	0.00	51	15	22.73
TMEM184A	0	genome.wustl.edu	37	7	1585573	1585573	+	RNA	DEL	C	C	-			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	7	1585573	1585573	C	-	DEL	TMEM184A	ENST00000449955	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.028	-	-	-	no_errors	TMEM184A	HGNC	ENSG00000164855	tier1			35	0	0.00	21	3	12.50
ZNF804B	0	genome.wustl.edu	37	7	88965547	88965547	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	7	88965547	88965547	G	T	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.3251	p.G1084V	0.865	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	tier1	-	-	9	0	0.00	31	14	31.11
MOGAT3	0	genome.wustl.edu	37	7	100841961	100841961	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	7	100841961	100841961	C	T	SNP	MOGAT3	ENST00000440203	human	ensembl	74_37	-1	known	missense	c.439	p.V147M	0.000	pfam_DAGAT	pfam_DAGAT	-	no_errors	MOGAT3	HGNC	ENSG00000106384	tier1	-	-	162	0	0.00	63	15	19.23
MPEG1	0	genome.wustl.edu	37	11	58979797	58979797	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	11	58979797	58979797	C	T	SNP	MPEG1	ENST00000361050	human	ensembl	74_37	-1	known	missense	c.542	p.R181H	0.068	pfam_MACPF,smart_MACPF	pfam_MACPF,smart_MACPF	-	no_errors	MPEG1	HGNC	ENSG00000197629	tier1	-	-	34	0	0.00	21	5	19.23
SULF1	0	genome.wustl.edu	37	8	70476322	70476322	+	Nonsense_Mutation	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	8	70476322	70476322	C	T	SNP	SULF1	ENST00000260128	human	ensembl	74_37	+1	known	nonsense	c.112	p.R38*	1.000	pirsf_Extracellular_sulfatase	pfam_Sulfatase,pfam_Extracellular_sulfatase_C,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core,pirsf_Extracellular_sulfatase	-	no_errors	SULF1	HGNC	ENSG00000137573	tier1	-	-	71	0	0.00	63	41	39.42
TMEM132D	0	genome.wustl.edu	37	12	129569287	129569287	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	12	129569287	129569287	G	T	SNP	TMEM132D	ENST00000389441	human	ensembl	74_37	-1	known	missense	c.18	p.S6R	0.002	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	tier1	-	-	65	0	0.00	46	4	8.00
SLC12A3	0	genome.wustl.edu	37	16	56921864	56921864	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	16	56921864	56921864	A	G	SNP	SLC12A3	ENST00000438926	human	ensembl	74_37	+1	known	missense	c.2206	p.N736D	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	tier1	-	-	139	0	0.00	85	13	13.27
PRKRIR	0	genome.wustl.edu	37	11	76062812	76062812	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	11	76062812	76062812	T	C	SNP	PRKRIR	ENST00000260045	human	ensembl	74_37	-1	known	missense	c.1382	p.N461S	0.933	superfamily_RNaseH-like_dom	pfam_Znf_C2CH,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_C2CH,pfscan_Znf_C2CH	-	no_errors	PRKRIR	HGNC	ENSG00000137492	tier1	-	-	44	0	0.00	26	34	56.67
MYCT1	0	genome.wustl.edu	37	6	153019226	153019226	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	6	153019226	153019226	C	G	SNP	MYCT1	ENST00000367245	human	ensembl	74_37	+1	known	missense	c.189	p.N63K	1.000	NULL	NULL	-	no_errors	MYCT1	HGNC	ENSG00000120279	tier1	-	-	56	0	0.00	31	24	43.64
PTPRF	0	genome.wustl.edu	37	1	44088569	44088569	+	RNA	DEL	A	A	-			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	1	44088569	44088569	A	-	DEL	PTPRF	ENST00000496447	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PTPRF	HGNC	ENSG00000142949	tier1			33	0	0.00	23	4	14.81
HCCS	0	genome.wustl.edu	37	X	11136723	11136723	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	X	11136723	11136723	G	T	SNP	HCCS	ENST00000321143	human	ensembl	74_37	+1	known	missense	c.504	p.W168C	1.000	pfam_Cyt_C/C1_haem_lyase	pfam_Cyt_C/C1_haem_lyase	-	no_errors	HCCS	HGNC	ENSG00000004961	tier1	-	-	92	0	0.00	84	19	18.45
TLR1	0	genome.wustl.edu	37	4	38802484	38802484	+	RNA	SNP	G	G	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	4	38802484	38802484	G	C	SNP	TLR1	ENST00000505744	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TLR1	HGNC	ENSG00000174125	tier1	-	-	63	0	0.00	76	36	32.14
FBLN1	0	genome.wustl.edu	37	22	45921483	45921483	+	Silent	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	22	45921483	45921483	C	T	SNP	FBLN1	ENST00000327858	human	ensembl	74_37	+1	known	silent	c.246	p.I82	1.000	smart_Anaphylatoxin/fibulin,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin	pfam_EGF-like_Ca-bd_dom,pfam_Anaphylatoxin/fibulin,smart_Anaphylatoxin/fibulin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_Fibulin-1,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN1	HGNC	ENSG00000077942	tier1	-	-	67	0	0.00	23	4	14.81
YARS	0	genome.wustl.edu	37	1	33282793	33282793	+	Missense_Mutation	SNP	A	A	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	1	33282793	33282793	A	C	SNP	YARS	ENST00000373477	human	ensembl	74_37	-1	known	missense	c.53	p.L18R	1.000	tigrfam_Tyr-tRNA-ligase	pfam_aa-tRNA-synth_Ic,pfam_tRNA-bd_dom,superfamily_NA-bd_OB-fold,prints_Tyr-tRNA-ligase,pfscan_tRNA-bd_dom,tigrfam_Tyr-tRNA-ligase	-	no_errors	YARS	HGNC	ENSG00000134684	tier1	-	-	265	0	0.00	112	29	20.57
ENSG00000257433	0	genome.wustl.edu	37	12	48111281	48111281	+	RNA	SNP	T	T	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	12	48111281	48111281	T	C	SNP	ENSG00000257433	ENST00000547799	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP1-197B17.3	Clone_based_vega_gene	ENSG00000257433	tier1	-	-	35	0	0.00	33	6	15.38
ARAP2	0	genome.wustl.edu	37	4	36149219	36149219	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	4	36149219	36149219	C	A	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	missense	c.3150	p.M1050I	0.931	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	tier1	-	-	27	0	0.00	46	24	34.29
OR13C4	0	genome.wustl.edu	37	9	107288554	107288554	+	Silent	SNP	T	T	G			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	9	107288554	107288554	T	G	SNP	OR13C4	ENST00000277216	human	ensembl	74_37	-1	known	silent	c.937	p.R313	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C4	HGNC	ENSG00000148136	tier1	-	-	47	0	0.00	70	22	23.91
PNPLA6	0	genome.wustl.edu	37	19	7618810	7618810	+	Silent	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	19	7618810	7618810	C	T	SNP	PNPLA6	ENST00000414982	human	ensembl	74_37	+1	known	silent	c.2340	p.S780	1.000	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA6	HGNC	ENSG00000032444	tier1	-	-	66	0	0.00	23	4	14.81
RBBP7	0	genome.wustl.edu	37	X	16875809	16875809	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	X	16875809	16875809	C	A	SNP	RBBP7	ENST00000380087	human	ensembl	74_37	-1	known	missense	c.505	p.D169Y	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_Histone-bd_RBBP4_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RBBP7	HGNC	ENSG00000102054	tier1	-	-	62	0	0.00	40	60	60.00
RGL4	0	genome.wustl.edu	37	22	24036039	24036039	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	22	24036039	24036039	C	T	SNP	RGL4	ENST00000290691	human	ensembl	74_37	+1	known	missense	c.790	p.R264C	0.917	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	-	no_errors	RGL4	HGNC	ENSG00000159496	tier1	-	-	53	0	0.00	45	4	8.16
PRKG1	0	genome.wustl.edu	37	10	52751154	52751154	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	10	52751154	52751154	G	T	SNP	PRKG1	ENST00000401604	human	ensembl	74_37	+1	known	nonsense	c.16	p.E6*	1.000	pirsf_cGMP-dependent_protein_kinase	pirsf_cGMP-dependent_protein_kinase,pfam_Prot_kinase_dom,pfam_cNMP-bd_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,prints_cGMP_dep_kinase,prints_cAMP/cGMP_kin,pfscan_cNMP-bd_dom,pfscan_Prot_kinase_dom	-	no_errors	PRKG1	HGNC	ENSG00000185532	tier1	-	-	316	0	0.00	128	38	22.89
RNF212	0	genome.wustl.edu	37	4	1087327	1087328	+	In_Frame_Ins	INS	-	-	CTGCCCAGGCTGGAGCCAGCC			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	4	1087327	1087328	-	CTGCCCAGGCTGGAGCCAGCC	INS	RNF212	ENST00000333673	human	ensembl	74_37	-1	known	in_frame_ins	c.722_721	p.S241in_frame_insWLAPAWAA	0.085:0.000	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	tier1			NA	NA	NA	NA	NA	NA
PCDHB3	0	genome.wustl.edu	37	5	140481682	140481682	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	5	140481682	140481682	C	G	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1449	p.N483K	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	tier1	-	-	356	0	0.00	145	42	22.46
MESDC2	0	genome.wustl.edu	37	15	81281996	81281996	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	15	81281996	81281996	G	A	SNP	MESDC2	ENST00000261758	human	ensembl	74_37	-1	known	missense	c.137	p.P46L	0.002	NULL	pfam_Mesoderm_development_cand-2	-	no_errors	MESDC2	HGNC	ENSG00000117899	tier1	-	-	160	0	0.00	58	28	32.56
DNM1P46	0	genome.wustl.edu	37	15	100340186	100340186	+	RNA	SNP	C	C	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	15	100340186	100340186	C	A	SNP	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.981	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	tier1	rs200975818	-	46	0	0.00	50	5	9.09
USH2A	0	genome.wustl.edu	37	1	216246286	216246286	+	Silent	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	1	216246286	216246286	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	silent	c.5802	p.S1934	0.007	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	rs149776188	GMAF=0.0005	22	0	0.00	74	12	13.95
DNMT3A	0	genome.wustl.edu	37	2	25536823	25536824	+	Frame_Shift_Del	DEL	CC	CC	-			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	2	25536823	25536824	CC	-	DEL	DNMT3A	ENST00000264709	human	ensembl	74_37	-1	known	frame_shift_del	c.31_30	p.D11fs	1.000:1.000	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3A	HGNC	ENSG00000119772	tier1			172	0	0.00	63	26	29.21
SLC22A10	0	genome.wustl.edu	37	11	63078478	63078479	+	Frame_Shift_Ins	INS	-	-	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	11	63078478	63078479	-	A	INS	SLC22A10	ENST00000332793	human	ensembl	74_37	+1	known	frame_shift_ins	c.1600_1599	p.N537fs	0.014:0.007	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A10	HGNC	ENSG00000184999	tier1			25	0	0.00	25	3	10.71
OR13C4	0	genome.wustl.edu	37	9	107288553	107288553	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	9	107288553	107288553	C	G	SNP	OR13C4	ENST00000277216	human	ensembl	74_37	-1	known	missense	c.938	p.R313T	0.000	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR13C4	HGNC	ENSG00000148136	tier1	-	-	49	0	0.00	70	22	23.91
SVIL	0	genome.wustl.edu	37	10	29821886	29821886	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	10	29821886	29821886	A	-	DEL	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	frame_shift_del	c.1410	p.S472fs	0.000	NULL	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	tier1			32	0	0.00	41	6	12.77
CEPT1	0	genome.wustl.edu	37	1	111690319	111690320	+	RNA	INS	-	-	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	1	111690319	111690320	-	A	INS	CEPT1	ENST00000460443	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.005	-	-	-	no_errors	CEPT1	HGNC	ENSG00000134255	tier1			38	0	0.00	31	3	8.82
C9orf78	0	genome.wustl.edu	37	9	132596000	132596001	+	RNA	INS	-	-	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	9	132596000	132596001	-	A	INS	C9orf78	ENST00000461762	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.062:0.115	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819	tier1			43	0	0.00	33	4	10.81
ZNF804B	0	genome.wustl.edu	37	7	88965546	88965546	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	7	88965546	88965546	G	C	SNP	ZNF804B	ENST00000333190	human	ensembl	74_37	+1	known	missense	c.3250	p.G1084R	0.912	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	tier1	-	-	9	0	0.00	30	14	31.82
SPTBN4	0	genome.wustl.edu	37	19	41008344	41008344	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	19	41008344	41008344	G	A	SNP	SPTBN4	ENST00000352632	human	ensembl	74_37	+1	known	missense	c.1133	p.S378N	1.000	pirsf_Spectrin_bsu,pfam_Spectrin_repeat	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTBN4	HGNC	ENSG00000160460	tier1	-	-	29	0	0.00	19	4	17.39
DOPEY2	0	genome.wustl.edu	37	21	37610931	37610931	+	Silent	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	21	37610931	37610931	C	T	SNP	DOPEY2	ENST00000399151	human	ensembl	74_37	+1	known	silent	c.2808	p.S936	0.659	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	tier1	-	-	72	0	0.00	42	4	8.70
MBOAT1	0	genome.wustl.edu	37	6	20124785	20124785	+	Frame_Shift_Del	DEL	A	A	-			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	6	20124785	20124785	A	-	DEL	MBOAT1	ENST00000324607	human	ensembl	74_37	-1	known	frame_shift_del	c.761	p.L254fs	0.906	pfam_MBOAT_fam	pfam_MBOAT_fam	-	no_errors	MBOAT1	HGNC	ENSG00000172197	tier1			41	0	0.00	33	3	8.33
ACHE	0	genome.wustl.edu	37	7	100491025	100491025	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	7	100491025	100491025	G	A	SNP	ACHE	ENST00000302913	human	ensembl	74_37	-1	known	missense	c.829	p.R277C	0.986	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Cholinesterase	-	no_errors	ACHE	HGNC	ENSG00000087085	tier1	-	-	51	0	0.00	27	5	15.62
UNKL	0	genome.wustl.edu	37	16	1444179	1444179	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	16	1444179	1444179	G	C	SNP	UNKL	ENST00000397462	human	ensembl	74_37	-1	known	missense	c.1451	p.T484S	0.978	pfam_Znf_CCCH,smart_Znf_CCCH	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	UNKL	HGNC	ENSG00000059145	tier1	-	-	150	0	0.00	115	25	17.86
TMEM139	0	genome.wustl.edu	37	7	142983670	142983670	+	Silent	SNP	G	G	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	7	142983670	142983670	G	C	SNP	TMEM139	ENST00000359333	human	ensembl	74_37	+1	known	silent	c.399	p.G133	0.000	NULL	NULL	-	no_errors	TMEM139	HGNC	ENSG00000178826	tier1	-	-	115	0	0.00	82	15	15.46
ATRX	0	genome.wustl.edu	37	X	76890128	76890128	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	X	76890128	76890128	C	T	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.4766	p.G1589E	1.000	pfam_SNF2_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	119	0	0.00	51	41	44.57
CCDC168	0	genome.wustl.edu	37	13	103383736	103383736	+	Silent	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	13	103383736	103383736	C	T	SNP	CCDC168	ENST00000322527	human	ensembl	74_37	-1	known	silent	c.5424	p.R1808	0.000	NULL	NULL	-	no_errors	CCDC168	HGNC	ENSG00000175820	tier1	-	-	25	0	0.00	36	33	47.14
PRIMPOL	0	genome.wustl.edu	37	4	185599415	185599415	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	4	185599415	185599415	C	G	SNP	PRIMPOL	ENST00000314970	human	ensembl	74_37	+1	known	missense	c.874	p.L292V	0.302	pfam_DNA_primase_S	pfam_DNA_primase_UL52/UL70_Herpvir,pfam_DNA_primase_S	-	no_errors	PRIMPOL	HGNC	ENSG00000164306	tier1	-	-	107	1	0.91	86	49	36.30
RSL24D1	0	genome.wustl.edu	37	15	55483213	55483213	+	Silent	SNP	A	A	G			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	15	55483213	55483213	A	G	SNP	RSL24D1	ENST00000260443	human	ensembl	74_37	-1	known	silent	c.228	p.N76	1.000	NULL	pfam_Ribosomal_L24e_rel,smart_TRASH_dom	-	no_errors	RSL24D1	HGNC	ENSG00000137876	tier1	-	-	52	0	0.00	38	13	25.49
PNISR	0	genome.wustl.edu	37	6	99848035	99848036	+	RNA	INS	-	-	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	6	99848035	99848036	-	A	INS	PNISR	ENST00000481229	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.988:0.986	-	-	-	no_errors	PNISR	HGNC	ENSG00000132424	tier1			30	0	0.00	33	4	10.81
NPAP1	0	genome.wustl.edu	37	15	24921704	24921704	+	Silent	SNP	G	G	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	15	24921704	24921704	G	A	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	silent	c.690	p.A230	0.001	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823	tier1	rs146878373	-	95	0	0.00	67	9	11.84
ALS2	0	genome.wustl.edu	37	2	202589136	202589136	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	2	202589136	202589136	G	A	SNP	ALS2	ENST00000264276	human	ensembl	74_37	-1	known	missense	c.3394	p.R1132C	1.000	pfam_MORN,smart_MORN	pfam_Reg_chr_condens,pfam_MORN,pfam_VPS9,pfam_DH-domain,superfamily_RCC1/BLIP-II,superfamily_DH-domain,smart_MORN,pfscan_VPS9,pfscan_Reg_chr_condens,pfscan_DH-domain,prints_Reg_chr_condens	-	no_errors	ALS2	HGNC	ENSG00000003393	tier1	rs149670991	GMAF=0.0005	94	0	0.00	51	32	38.55
MFAP4	0	genome.wustl.edu	37	17	19288435	19288435	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	17	19288435	19288435	G	A	SNP	MFAP4	ENST00000395592	human	ensembl	74_37	-1	known	missense	c.569	p.A190V	0.125	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	MFAP4	HGNC	ENSG00000166482	tier1	-	-	48	0	0.00	44	4	8.33
DNMT3A	0	genome.wustl.edu	37	2	25536821	25536822	+	Frame_Shift_Ins	INS	-	-	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	2	25536821	25536822	-	A	INS	DNMT3A	ENST00000264709	human	ensembl	74_37	-1	known	frame_shift_ins	c.33_32	p.T12fs	1.000:1.000	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3A	HGNC	ENSG00000119772	tier1			177	0	0.00	64	13	16.88
CPZ	0	genome.wustl.edu	37	4	8621215	8621215	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	4	8621215	8621215	G	C	SNP	CPZ	ENST00000360986	human	ensembl	74_37	+1	known	missense	c.1830	p.L610F	0.000	NULL	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Frizzled_dom	-	no_errors	CPZ	HGNC	ENSG00000109625	tier1	-	-	43	0	0.00	36	7	16.28
AMER3	0	genome.wustl.edu	37	2	131520382	131520382	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	2	131520382	131520382	C	T	SNP	AMER3	ENST00000321420	human	ensembl	74_37	+1	known	missense	c.737	p.S246L	0.999	pfam_Uncharacterised_FAM123	pfam_Uncharacterised_FAM123	-	no_errors	AMER3	HGNC	ENSG00000178171	tier1	-	-	94	0	0.00	14	12	46.15
CNOT4	0	genome.wustl.edu	37	7	135047671	135047671	+	Missense_Mutation	SNP	T	T	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	7	135047671	135047671	T	A	SNP	CNOT4	ENST00000541284	human	ensembl	74_37	-1	known	missense	c.2108	p.D703V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,pfscan_Znf_RING,pfscan_RRM_dom	-	no_errors	CNOT4	HGNC	ENSG00000080802	tier1	-	-	50	0	0.00	49	7	12.28
GUCY2D	0	genome.wustl.edu	37	17	7918813	7918813	+	Silent	SNP	G	G	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	17	7918813	7918813	G	T	SNP	GUCY2D	ENST00000254854	human	ensembl	74_37	+1	known	silent	c.2937	p.L979	1.000	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_ANF_lig-bd_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Haem_no_assoc-bd,superfamily_Peripla_BP_I,superfamily_A/G_cyclase,superfamily_Kinase-like_dom,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_A/G_cyclase,pfscan_Prot_kinase_dom,pfscan_A/G_cyclase,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	GUCY2D	HGNC	ENSG00000132518	tier1	-	-	97	0	0.00	33	7	17.50
LOC150051	0	genome.wustl.edu	37	21	32931869	32931870	+	RNA	DEL	GC	GC	-			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	21	32931869	32931870	GC	-	DEL	LOC150051	ENST00000433071	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	AP000251.3	Clone_based_vega_gene	ENSG00000237594	tier1			34	0	0.00	20	3	13.04
NLGN4X	0	genome.wustl.edu	37	X	6069226	6069226	+	Silent	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	X	6069226	6069226	C	T	SNP	NLGN4X	ENST00000381093	human	ensembl	74_37	-1	known	silent	c.282	p.P94	0.000	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3,prints_Neuroligin	-	no_errors	NLGN4X	HGNC	ENSG00000146938	tier1	-	-	74	0	0.00	23	29	54.72
TP53	0	genome.wustl.edu	37	17	7578464	7578464	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	17	7578464	7578464	G	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.466	p.R156G	0.010	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	42	0	0.00	10	9	47.37
ANKLE1	0	genome.wustl.edu	37	19	17394750	17394750	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	19	17394750	17394750	G	T	SNP	ANKLE1	ENST00000394458	human	ensembl	74_37	+1	known	nonsense	c.1177	p.E393*	0.000	superfamily_LEM/LEM-like_dom,pfscan_LEM_dom	pfam_Ankyrin_rpt,pfam_LEM_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_LEM/LEM-like_dom,superfamily_Lactate_DH/Glyco_Ohase_4_C,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_LEM_dom	-	no_errors	ANKLE1	HGNC	ENSG00000160117	tier1	-	-	44	0	0.00	18	4	18.18
NFS1	0	genome.wustl.edu	37	20	34263057	34263057	+	Frame_Shift_Del	DEL	C	C	-			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	20	34263057	34263057	C	-	DEL	NFS1	ENST00000374092	human	ensembl	74_37	-1	known	frame_shift_del	c.858	p.Q287fs	0.981	pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	pfam_Aminotrans_V/Cys_dSase,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase,pirsf_Cysteine_dSase_NifS,tigrfam_Cys_deSase	-	no_errors	NFS1	HGNC	ENSG00000244005	tier1			29	0	0.00	18	2	10.00
ZNF658	0	genome.wustl.edu	37	9	40772812	40772812	+	Silent	SNP	T	T	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	9	40772812	40772812	T	C	SNP	ZNF658	ENST00000377626	human	ensembl	74_37	-1	known	silent	c.2463	p.T821	0.999	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF658	HGNC	ENSG00000196409	tier1	-	-	109	1	0.91	144	104	41.94
VAC14	0	genome.wustl.edu	37	16	70820149	70820149	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	16	70820149	70820149	C	T	SNP	VAC14	ENST00000261776	human	ensembl	74_37	-1	known	missense	c.224	p.G75D	1.000	superfamily_ARM-type_fold	pfam_VAC14_Fig4p-bd,pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	VAC14	HGNC	ENSG00000103043	tier1	-	-	74	0	0.00	58	12	17.14
C2orf78	0	genome.wustl.edu	37	2	74043560	74043560	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	2	74043560	74043560	G	A	SNP	C2orf78	ENST00000409561	human	ensembl	74_37	+1	novel	missense	c.2210	p.R737Q	0.022	NULL	NULL	-	no_errors	C2orf78	HGNC	ENSG00000187833	tier1	-	-	34	0	0.00	21	28	57.14
SLIT2	0	genome.wustl.edu	37	4	20597435	20597435	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	4	20597435	20597435	T	C	SNP	SLIT2	ENST00000504154	human	ensembl	74_37	+1	known	missense	c.3298	p.C1100R	1.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_Leu-rich_rpt,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Fol_N,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT2	HGNC	ENSG00000145147	tier1	-	-	70	0	0.00	81	38	31.93
CEL	0	genome.wustl.edu	37	9	135946410	135946410	+	Missense_Mutation	SNP	C	C	G			TCGA-3B-A9HX-01A-11D-A38Z-09	TCGA-3B-A9HX-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1fe4e8f7-b729-4f00-9d09-a95a23e97fe3	385e008c-dae7-4b29-9287-16863463e7c6	9	135946410	135946410	C	G	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	missense	c.1530	p.H510Q	0.007	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	-	-	191	0	0.00	100	29	22.48
