Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000272231	0	genome.wustl.edu	37	12	74293700	74293707	+	RNA	DEL	ACACACAC	ACACACAC	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	ACACACAC	ACACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	12	74293700	74293707	ACACACAC	-	DEL	ENSG00000272231	ENST00000606199	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.011:0.011:0.017:0.021:0.026:0.029:0.033:0.036	-	-	-	no_errors	AC136188.1	Clone_based_ensembl_gene	ENSG00000272231	tier1			NA	NA	NA	NA	NA	NA
FOXE1	0	genome.wustl.edu	37	9	100616701	100616706	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	GCCGCC	GCCGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	9	100616701	100616706	GCCGCC	-	DEL	FOXE1	ENST00000375123	human	ensembl	74_37	+1	known	in_frame_del	c.505_510	p.AA172in_frame_del	0.602:0.620:0.614:0.750:0.779:0.753	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXE1	HGNC	ENSG00000178919	tier1			NA	NA	NA	NA	NA	NA
ENSG00000234978	0	genome.wustl.edu	37	1	142803240	142803240	+	RNA	SNP	G	G	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	1	142803240	142803240	G	A	SNP	ENSG00000234978	ENST00000423385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	RP11-423O2.5	Clone_based_vega_gene	ENSG00000234978	tier1	rs76010818	-	46	0	0.00	68	12	15.00
AXIN2	0	genome.wustl.edu	37	17	63533733	63533735	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	17	63533733	63533735	TGG	-	DEL	AXIN2	ENST00000307078	human	ensembl	74_37	-1	known	in_frame_del	c.1421_1419	p.H474in_frame_del	0.471:0.843:0.868	NULL	pfam_DIX,pfam_RGS_dom,pfam_Axin_b-cat-bd,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,smart_DIX,pfscan_DIX,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	AXIN2	HGNC	ENSG00000168646	tier1			24	0	0.00	12	3	20.00
RBPJ	0	genome.wustl.edu	37	4	26364118	26364118	+	RNA	SNP	G	G	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	4	26364118	26364118	G	A	SNP	RBPJ	ENST00000511401	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBPJ	HGNC	ENSG00000168214	tier1	-	-	39	0	0.00	31	35	53.03
POLE	0	genome.wustl.edu	37	12	133220099	133220100	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	12	133220099	133220100	CA	-	DEL	POLE	ENST00000320574	human	ensembl	74_37	-1	known	frame_shift_del	c.4338_4337	p.V1446fs	1.000:1.000	NULL	pfam_DNA_pol_e_suA_C,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_3'-5'_exonuclease_PolB-like,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	-	no_errors	POLE	HGNC	ENSG00000177084	tier1			59	0	0.00	22	4	15.38
PSMC6	0	genome.wustl.edu	37	14	53176455	53176455	+	RNA	DEL	T	T	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	14	53176455	53176455	T	-	DEL	PSMC6	ENST00000554952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.141	-	-	-	no_errors	PSMC6	HGNC	ENSG00000100519	tier1			11	0	0.00	28	7	20.00
ATRX	0	genome.wustl.edu	37	X	76938581	76938581	+	Nonsense_Mutation	SNP	C	C	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	X	76938581	76938581	C	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	nonsense	c.2167	p.E723*	0.125	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	26	0	0.00	21	33	61.11
BRAT1	0	genome.wustl.edu	37	7	2581443	2581443	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	7	2581443	2581443	G	A	SNP	BRAT1	ENST00000340611	human	ensembl	74_37	-1	known	missense	c.1043	p.A348V	0.002	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	BRAT1	HGNC	ENSG00000106009	tier1	-	-	104	0	0.00	22	49	69.01
IGF1R	0	genome.wustl.edu	37	15	99456289	99456289	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	15	99456289	99456289	A	G	SNP	IGF1R	ENST00000268035	human	ensembl	74_37	+1	known	missense	c.1606	p.T536A	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	tier1	-	-	35	0	0.00	26	25	49.02
POU2F1	0	genome.wustl.edu	37	1	167385485	167385485	+	RNA	DEL	A	A	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	1	167385485	167385485	A	-	DEL	POU2F1	ENST00000367865	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.980	-	-	-	no_errors	POU2F1	HGNC	ENSG00000143190	tier1			13	0	0.00	12	3	20.00
FAM65A	0	genome.wustl.edu	37	16	67575479	67575479	+	Nonsense_Mutation	SNP	G	G	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	16	67575479	67575479	G	A	SNP	FAM65A	ENST00000422602	human	ensembl	74_37	+1	known	nonsense	c.1008	p.W336*	1.000	NULL	superfamily_ARM-type_fold,superfamily_HR1_rho-bd	-	no_errors	FAM65A	HGNC	ENSG00000039523	tier1	-	-	36	0	0.00	3	21	87.50
MYH11	0	genome.wustl.edu	37	16	15797882	15797882	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	16	15797882	15797882	T	C	SNP	MYH11	ENST00000396324	human	ensembl	74_37	-1	known	missense	c.5906	p.D1969G	0.817	NULL	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH11	HGNC	ENSG00000133392	tier1	rs112999816	-	68	0	0.00	47	79	62.70
PLCH1	0	genome.wustl.edu	37	3	155215120	155215120	+	Missense_Mutation	SNP	A	A	G			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	3	155215120	155215120	A	G	SNP	PLCH1	ENST00000340059	human	ensembl	74_37	-1	known	missense	c.1847	p.I616T	0.956	pfam_PLipase_C_Pinositol-sp_Y,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_Pinositol-sp_Y,pfscan_PLipase_C_Pinositol-sp_Y	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_Pleckstrin_homology,smart_EF_hand_dom,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCH1	HGNC	ENSG00000114805	tier1	-	-	34	0	0.00	76	50	39.68
HLA-DRB6	0	genome.wustl.edu	37	6	32522507	32522526	+	RNA	DEL	CACTTGGCAGGTGTAAACCT	CACTTGGCAGGTGTAAACCT	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	CACTTGGCAGGTGTAAACCT	CACTTGGCAGGTGTAAACCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	6	32522507	32522526	CACTTGGCAGGTGTAAACCT	-	DEL	HLA-DRB6	ENST00000411500	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:0.995:0.983:0.993:1.000:1.000:1.000:1.000:0.998:0.995:0.995:0.994:0.998:1.000:0.999:1.000:1.000:1.000:1.000	-	-	-	no_errors	HLA-DRB6	HGNC	ENSG00000229391	tier1			NA	NA	NA	NA	NA	NA
SLC38A10	0	genome.wustl.edu	37	17	79257271	79257271	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	17	79257271	79257271	C	T	SNP	SLC38A10	ENST00000374759	human	ensembl	74_37	-1	known	missense	c.295	p.A99T	0.998	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A10	HGNC	ENSG00000157637	tier1	-	-	48	0	0.00	44	6	12.00
GPSM2	0	genome.wustl.edu	37	1	109444543	109444543	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	1	109444543	109444543	C	T	SNP	GPSM2	ENST00000264126	human	ensembl	74_37	+1	known	missense	c.929	p.A310V	0.995	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_GoLoco_motif,pfam_TPR_1,pfam_TPR-4,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM2	HGNC	ENSG00000121957	tier1	-	-	37	0	0.00	27	27	50.00
KRT71	0	genome.wustl.edu	37	12	52942539	52942539	+	Silent	SNP	G	G	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	12	52942539	52942539	G	T	SNP	KRT71	ENST00000267119	human	ensembl	74_37	-1	known	silent	c.759	p.A253	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT71	HGNC	ENSG00000139648	tier1	-	-	45	0	0.00	40	4	9.09
HSPBP1	0	genome.wustl.edu	37	19	55790886	55790887	+	In_Frame_Ins	INS	-	-	GCCGCCGCC			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	19	55790886	55790887	-	GCCGCCGCC	INS	HSPBP1	ENST00000255631	human	ensembl	74_37	-1	known	in_frame_ins	c.91_90	p.30in_frame_insGGG	0.883:0.989	NULL	superfamily_ARM-type_fold	-	no_errors	HSPBP1	HGNC	ENSG00000133265	tier1			NA	NA	NA	NA	NA	NA
MEI1	0	genome.wustl.edu	37	22	42154406	42154406	+	Silent	SNP	G	G	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	22	42154406	42154406	G	T	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	silent	c.1989	p.L663	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077	tier1	-	-	16	0	0.00	8	19	70.37
OR5P2	0	genome.wustl.edu	37	11	7818383	7818384	+	In_Frame_Ins	INS	-	-	ATATGGTTACCAGGTAGATGC			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	11	7818383	7818384	-	ATATGGTTACCAGGTAGATGC	INS	OR5P2	ENST00000329434	human	ensembl	74_37	-1	known	in_frame_ins	c.107_106	p.36in_frame_insCIYLVTI	0.001:0.001	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	tier1			NA	NA	NA	NA	NA	NA
SPATA31A6	0	genome.wustl.edu	37	9	43627588	43627588	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	9	43627588	43627588	C	T	SNP	SPATA31A6	ENST00000332857	human	ensembl	74_37	-1	known	missense	c.1099	p.A367T	0.001	NULL	NULL	-	no_errors	SPATA31A6	HGNC	ENSG00000185775	tier1	-	-	222	0	0.00	15	155	91.18
NCAN	0	genome.wustl.edu	37	19	19338775	19338775	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	19	19338775	19338775	G	T	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.2346	p.W782C	0.003	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287	tier1	-	-	50	0	0.00	33	4	10.81
PHRF1	0	genome.wustl.edu	37	11	605246	605246	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	11	605246	605246	G	T	SNP	PHRF1	ENST00000264555	human	ensembl	74_37	+1	known	missense	c.1280	p.G427V	1.000	NULL	pfam_Znf_PHD-finger,pfam_Znf_C3HC4_RING-type,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_PHD,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	PHRF1	HGNC	ENSG00000070047	tier1	-	-	32	0	0.00	9	9	50.00
CCDC162P	0	genome.wustl.edu	37	6	109630754	109630754	+	RNA	SNP	A	A	C			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	6	109630754	109630754	A	C	SNP	CCDC162P	ENST00000506861	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CCDC162P	HGNC	ENSG00000203799	tier1	-	-	32	0	0.00	23	37	61.67
HP	0	genome.wustl.edu	37	16	72093094	72093095	+	Frame_Shift_Ins	INS	-	-	CTGAGCA			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	16	72093094	72093095	-	CTGAGCA	INS	HP	ENST00000569639	human	ensembl	74_37	+1	putative	frame_shift_ins	c.272_273	p.*93fs	0.001:0.000	NULL	superfamily_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	HP	HGNC	ENSG00000257017	tier1			NA	NA	NA	NA	NA	NA
NLRC5	0	genome.wustl.edu	37	16	57057759	57057759	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	16	57057759	57057759	C	A	SNP	NLRC5	ENST00000262510	human	ensembl	74_37	+1	known	missense	c.418	p.Q140K	0.999	NULL	pfam_Leu-rich_rpt,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_NACHT_NTPase	-	no_errors	NLRC5	HGNC	ENSG00000140853	tier1	-	-	43	0	0.00	40	4	9.09
ENSG00000269688	0	genome.wustl.edu	37	19	39336125	39336125	+	RNA	SNP	G	G	C			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	19	39336125	39336125	G	C	SNP	ENSG00000269688	ENST00000600473	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC008982.2	Clone_based_vega_gene	ENSG00000269688	tier1	-	-	19	0	0.00	14	10	41.67
CENPV	0	genome.wustl.edu	37	17	16256372	16256372	+	Nonsense_Mutation	SNP	C	C	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	17	16256372	16256372	C	A	SNP	CENPV	ENST00000299736	human	ensembl	74_37	-1	known	nonsense	c.379	p.E127*	0.913	NULL	pfam_GFA/CENP-V,superfamily_Mss4-like	-	no_errors	CENPV	HGNC	ENSG00000166582	tier1	-	-	22	0	0.00	12	4	25.00
LTBP3	0	genome.wustl.edu	37	11	65325326	65325334	+	In_Frame_Del	DEL	CAGCAGCAG	CAGCAGCAG	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	CAGCAGCAG	CAGCAGCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	11	65325326	65325334	CAGCAGCAG	-	DEL	LTBP3	ENST00000301873	human	ensembl	74_37	-1	known	in_frame_del	c.105_97	p.LLL33in_frame_del	0.996:0.996:0.995:0.995:0.994:0.994:0.993:0.995:0.997	NULL	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	LTBP3	HGNC	ENSG00000168056	tier1			NA	NA	NA	NA	NA	NA
KRTAP10-9	0	genome.wustl.edu	37	21	46047916	46047916	+	Nonsense_Mutation	SNP	C	C	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	21	46047916	46047916	C	A	SNP	KRTAP10-9	ENST00000397911	human	ensembl	74_37	+1	known	nonsense	c.828	p.C276*	0.081	NULL	NULL	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	tier1	-	-	107	0	0.00	50	45	47.37
TTI1	0	genome.wustl.edu	37	20	36625225	36625225	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	20	36625225	36625225	G	T	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	nonsense	c.2924	p.S975*	1.000	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407	tier1	-	-	54	0	0.00	38	4	9.52
TP53	0	genome.wustl.edu	37	17	7577551	7577551	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	17	7577551	7577551	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.730	p.G244S	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	47	0	0.00	4	34	89.47
KLHL26	0	genome.wustl.edu	37	19	18775148	18775148	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	19	18775148	18775148	C	T	SNP	KLHL26	ENST00000300976	human	ensembl	74_37	+1	known	missense	c.161	p.A54V	1.000	superfamily_BTB/POZ_fold,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL26	HGNC	ENSG00000167487	tier1	-	-	69	0	0.00	44	4	8.33
CEP135	0	genome.wustl.edu	37	4	56865763	56865763	+	Silent	SNP	T	T	C			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	4	56865763	56865763	T	C	SNP	CEP135	ENST00000257287	human	ensembl	74_37	+1	known	silent	c.2232	p.D744	1.000	NULL	superfamily_Prefoldin,superfamily_EB1_C	-	no_errors	CEP135	HGNC	ENSG00000174799	tier1	-	-	74	0	0.00	102	30	22.73
USP30-AS1	0	genome.wustl.edu	37	12	109490426	109490427	+	RNA	INS	-	-	CGGCGG			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	12	109490426	109490427	-	CGGCGG	INS	USP30-AS1	ENST00000478808	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	USP30-AS1	HGNC	ENSG00000256262	tier1			NA	NA	NA	NA	NA	NA
BOLL	0	genome.wustl.edu	37	2	198650830	198650830	+	RNA	SNP	C	C	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	2	198650830	198650830	C	A	SNP	BOLL	ENST00000486206	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.799	-	-	-	no_errors	BOLL	HGNC	ENSG00000152430	tier1	-	-	48	0	0.00	33	4	10.81
SSPO	0	genome.wustl.edu	37	7	149477097	149477097	+	RNA	SNP	G	G	C			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	7	149477097	149477097	G	C	SNP	SSPO	ENST00000262089	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	tier1	-	-	63	0	0.00	48	7	12.73
TDRD3	0	genome.wustl.edu	37	13	61103259	61103260	+	Frame_Shift_Ins	INS	-	-	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	13	61103259	61103260	-	A	INS	TDRD3	ENST00000535286	human	ensembl	74_37	+1	known	frame_shift_ins	c.1900_1901	p.I636fs	1.000:1.000	NULL	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	tier1			73	0	0.00	108	14	11.48
SNED1	0	genome.wustl.edu	37	2	242002240	242002240	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	2	242002240	242002240	C	A	SNP	SNED1	ENST00000310397	human	ensembl	74_37	+1	known	missense	c.2290	p.H764N	0.998	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Fibronectin_type3,pfam_Nidogen_extracell_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_Fibronectin_type3,superfamily_Sushi_SCR_CCP,smart_Nidogen_extracell_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Fibronectin_type3,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Sushi_SCR_CCP	-	no_errors	SNED1	HGNC	ENSG00000162804	tier1	-	-	68	0	0.00	20	4	16.67
GBA2	0	genome.wustl.edu	37	9	35740529	35740529	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	9	35740529	35740529	G	T	SNP	GBA2	ENST00000545786	human	ensembl	74_37	-1	known	missense	c.1141	p.P381T	1.000	pfam_GBA2_N,pirsf_Beta_glucosidase_GBA2-type	pfam_Glucosylceramidase,pfam_GBA2_N,superfamily_6-hairpin_glycosidase-like,pirsf_Beta_glucosidase_GBA2-type	-	no_errors	GBA2	HGNC	ENSG00000070610	tier1	-	-	32	0	0.00	26	4	13.33
C3orf27	0	genome.wustl.edu	37	3	128292319	128292320	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	3	128292319	128292320	TC	-	DEL	C3orf27	ENST00000356020	human	ensembl	74_37	-1	known	frame_shift_del	c.254_253	p.D85fs	0.075:0.076	NULL	NULL	-	no_errors	C3orf27	HGNC	ENSG00000198685	tier1			38	0	0.00	37	4	9.76
YLPM1	0	genome.wustl.edu	37	14	75265723	75265723	+	Silent	SNP	C	C	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	14	75265723	75265723	C	A	SNP	YLPM1	ENST00000325680	human	ensembl	74_37	+1	known	silent	c.3723	p.L1241	0.858	NULL	superfamily_P-loop_NTPase	-	no_errors	YLPM1	HGNC	ENSG00000119596	tier1	-	-	37	0	0.00	28	4	12.50
GAN	0	genome.wustl.edu	37	16	81391444	81391444	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	16	81391444	81391444	G	T	SNP	GAN	ENST00000568107	human	ensembl	74_37	+1	known	missense	c.881	p.C294F	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	GAN	HGNC	ENSG00000261609	tier1	-	-	27	0	0.00	39	4	9.30
DCAF17	0	genome.wustl.edu	37	2	172291384	172291384	+	RNA	SNP	G	G	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	2	172291384	172291384	G	A	SNP	DCAF17	ENST00000490217	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DCAF17	HGNC	ENSG00000115827	tier1	-	-	17	0	0.00	8	5	38.46
MMP3	0	genome.wustl.edu	37	11	102708089	102708089	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	11	102708089	102708089	G	C	SNP	MMP3	ENST00000299855	human	ensembl	74_37	-1	known	missense	c.1273	p.Q425E	0.000	pirsf_Pept_M10A_Metazoans,pfam_Hemopexin-like_repeat,superfamily_Hemopexin-like_dom,smart_Hemopexin-like_repeat	pirsf_Pept_M10A_Metazoans,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin-like_repeat,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin-like_dom,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin-like_repeat,prints_Pept_M10A	-	no_errors	MMP3	HGNC	ENSG00000149968	tier1	-	-	12	0	0.00	41	14	25.45
CCSAP	0	genome.wustl.edu	37	1	229460176	229460176	+	RNA	SNP	T	T	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	1	229460176	229460176	T	A	SNP	CCSAP	ENST00000483092	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CCSAP	HGNC	ENSG00000154429	tier1	-	-	66	0	0.00	70	11	13.58
SEC31B	0	genome.wustl.edu	37	10	102258919	102258919	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	10	102258919	102258919	G	C	SNP	SEC31B	ENST00000370345	human	ensembl	74_37	-1	known	missense	c.1582	p.Q528E	0.760	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC	ENSG00000075826	tier1	-	-	19	0	0.00	22	16	42.11
ROS1	0	genome.wustl.edu	37	6	117737431	117737431	+	Missense_Mutation	SNP	G	G	C			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	6	117737431	117737431	G	C	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	missense	c.218	p.A73G	0.990	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	tier1	-	-	29	0	0.00	28	30	51.72
ADAM2	0	genome.wustl.edu	37	8	39613417	39613417	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	8	39613417	39613417	C	T	SNP	ADAM2	ENST00000265708	human	ensembl	74_37	-1	known	missense	c.1627	p.G543R	1.000	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM2	HGNC	ENSG00000104755	tier1	-	-	106	0	0.00	131	128	49.42
PFKFB4	0	genome.wustl.edu	37	3	48581056	48581056	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	3	48581056	48581056	C	T	SNP	PFKFB4	ENST00000232375	human	ensembl	74_37	-1	known	missense	c.335	p.R112H	0.462	pfam_6Phosfructo_kin,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB4	HGNC	ENSG00000114268	tier1	rs147704999	-	25	0	0.00	13	19	59.38
TMEM25	0	genome.wustl.edu	37	11	118406329	118406336	+	Frame_Shift_Del	DEL	AGTGTGGA	AGTGTGGA	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	AGTGTGGA	AGTGTGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	11	118406329	118406336	AGTGTGGA	-	DEL	TMEM25	ENST00000533102	human	ensembl	74_37	+1	known	frame_shift_del	c.1131_1138	p.V378fs	0.003:0.003:0.001:0.002:0.000:0.000:0.001:0.000	NULL	pfam_CD80_C2-set,pfscan_Ig-like_dom	-	no_errors	TMEM25	HGNC	ENSG00000149582	tier1			NA	NA	NA	NA	NA	NA
KCNH2	0	genome.wustl.edu	37	7	150655495	150655503	+	In_Frame_Del	DEL	CGCCCGCGC	CGCCCGCGC	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	CGCCCGCGC	CGCCCGCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	7	150655495	150655503	CGCCCGCGC	-	DEL	KCNH2	ENST00000262186	human	ensembl	74_37	-1	known	in_frame_del	c.568_560	p.GAG187in_frame_del	0.728:0.003:0.030:0.030:0.005:0.007:0.000:0.000:0.006	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118	tier1			NA	NA	NA	NA	NA	NA
JAK3	0	genome.wustl.edu	37	19	17951086	17951086	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	19	17951086	17951086	G	A	SNP	JAK3	ENST00000458235	human	ensembl	74_37	-1	known	missense	c.1207	p.R403C	0.960	smart_SH2,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_FERM_domain,pfscan_Prot_kinase_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	tier1	-	-	19	0	0.00	25	13	34.21
KCNH7	0	genome.wustl.edu	37	2	163279793	163279793	+	Missense_Mutation	SNP	G	G	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	2	163279793	163279793	G	A	SNP	KCNH7	ENST00000328032	human	ensembl	74_37	-1	known	missense	c.2186	p.A729V	0.158	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_PAS,superfamily_cNMP-bd-like,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH7	HGNC	ENSG00000184611	tier1	-	-	38	0	0.00	75	10	11.76
RANBP2	0	genome.wustl.edu	37	2	109384558	109384558	+	Silent	SNP	T	T	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	2	109384558	109384558	T	A	SNP	RANBP2	ENST00000283195	human	ensembl	74_37	+1	known	silent	c.7563	p.V2521	0.971	NULL	pfam_Ran_bind_dom,pfam_Znf_RanBP2,pfam_IR1-M,pfam_Cyclophilin-like_PPIase_dom,pfam_TPR_1,superfamily_Cyclophilin-like_PPIase_dom,smart_TPR_repeat,smart_Ran_bind_dom,smart_Znf_RanBP2,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Znf_RanBP2,pfscan_Cyclophilin-like_PPIase_dom,pfscan_Ran_bind_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	RANBP2	HGNC	ENSG00000153201	tier1	-	-	169	0	0.00	150	122	44.85
PPIEL	0	genome.wustl.edu	37	1	39990865	39990865	+	RNA	SNP	C	C	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	1	39990865	39990865	C	A	SNP	PPIEL	ENST00000331856	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-69E11.4	Clone_based_vega_gene	ENSG00000182109	tier1	-	-	73	0	0.00	50	33	39.76
TRPA1	0	genome.wustl.edu	37	8	72935420	72935458	+	RNA	DEL	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC	-			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	8	72935420	72935458	GCATAGGTTTTAACCTCGGTCCCTTCTGAATGTAGGAAC	-	DEL	TRPA1	ENST00000520596	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.002:0.002:0.000:0.000:0.000:0.000:0.000:0.001:0.002:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	TRPA1	HGNC	ENSG00000104321	tier1			NA	NA	NA	NA	NA	NA
TRIML1	0	genome.wustl.edu	37	4	189063511	189063511	+	Nonsense_Mutation	SNP	G	G	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	4	189063511	189063511	G	T	SNP	TRIML1	ENST00000332517	human	ensembl	74_37	+1	known	nonsense	c.610	p.E204*	0.823	NULL	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIML1	HGNC	ENSG00000184108	tier1	-	-	39	0	0.00	28	22	44.00
PAXIP1	0	genome.wustl.edu	37	7	154760424	154760424	+	Missense_Mutation	SNP	G	G	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	7	154760424	154760424	G	T	SNP	PAXIP1	ENST00000397192	human	ensembl	74_37	-1	known	missense	c.1487	p.A496D	0.999	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	tier1	-	-	34	0	0.00	27	4	12.90
CELP	0	genome.wustl.edu	37	9	135962585	135962586	+	RNA	INS	-	-	GCCCCATCCCCCCTACGGGGGACTCTGGGGCC			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	9	135962585	135962586	-	GCCCCATCCCCCCTACGGGGGACTCTGGGGCC	INS	CELP	ENST00000411440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.130:0.000	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	tier1			NA	NA	NA	NA	NA	NA
TLL1	0	genome.wustl.edu	37	4	166910546	166910546	+	Silent	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	4	166910546	166910546	C	T	SNP	TLL1	ENST00000061240	human	ensembl	74_37	+1	known	silent	c.183	p.G61	0.996	pirsf_BMP_1/tolloid-like	pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_BMP_1/tolloid-like,pfscan_CUB_dom,pfscan_EG-like_dom,prints_Peptidase_M12A	-	no_errors	TLL1	HGNC	ENSG00000038295	tier1	-	-	23	0	0.00	63	54	46.15
RUSC1	0	genome.wustl.edu	37	1	155295207	155295207	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	1	155295207	155295207	C	T	SNP	RUSC1	ENST00000368352	human	ensembl	74_37	+1	known	missense	c.1634	p.P545L	1.000	pfam_Run,pfscan_Run	pfam_Run,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Run,smart_SH3_domain,pfscan_Run,pfscan_SH3_domain	-	no_errors	RUSC1	HGNC	ENSG00000160753	tier1	-	-	20	0	0.00	12	13	52.00
SSX7	0	genome.wustl.edu	37	X	52681341	52681341	+	Missense_Mutation	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	X	52681341	52681341	C	T	SNP	SSX7	ENST00000298181	human	ensembl	74_37	-1	known	missense	c.241	p.G81R	0.000	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	SSX7	HGNC	ENSG00000187754	tier1	-	-	109	0	0.00	56	116	67.05
NTSR1	0	genome.wustl.edu	37	20	61340995	61340995	+	Missense_Mutation	SNP	T	T	C			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	20	61340995	61340995	T	C	SNP	NTSR1	ENST00000370501	human	ensembl	74_37	+1	known	missense	c.436	p.F146L	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NT_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_NT1_rcpt,prints_GPCR_Rhodpsn,prints_NT_rcpt	-	no_errors	NTSR1	HGNC	ENSG00000101188	tier1	-	-	53	0	0.00	25	11	30.56
RP1	0	genome.wustl.edu	37	8	55541768	55541768	+	Missense_Mutation	SNP	C	C	A			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	8	55541768	55541768	C	A	SNP	RP1	ENST00000220676	human	ensembl	74_37	+1	known	missense	c.5326	p.L1776I	0.963	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1	HGNC	ENSG00000104237	tier1	-	-	22	0	0.00	25	23	47.92
SATL1	0	genome.wustl.edu	37	X	84363261	84363261	+	Silent	SNP	C	C	T			TCGA-3B-A9I1-01A-11D-A38Z-09	TCGA-3B-A9I1-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7b3b4785-3d62-4dd2-8051-2ce017c9e248	4843c7f9-2185-4436-b5a9-7526d6aca0c9	X	84363261	84363261	C	T	SNP	SATL1	ENST00000509231	human	ensembl	74_37	-1	known	silent	c.714	p.K238	0.000	NULL	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788	tier1	-	-	22	0	0.00	39	20	33.90
