Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCC6P1	0	genome.wustl.edu	37	16	18586150	18586150	+	RNA	SNP	A	A	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	16	18586150	18586150	A	T	SNP	ABCC6P1	ENST00000546162	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ABCC6P1	HGNC	ENSG00000256340	tier1	-	-	41	0	0.00	57	40	41.24
RPL41	0	genome.wustl.edu	37	12	56511286	56511286	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	56511286	56511286	A	T	SNP	RPL41	ENST00000501597	human	ensembl	74_37	+1	known	missense	c.56	p.K19M	1.000	pfam_Ribosomal_L41	pfam_Ribosomal_L41	-	no_errors	RPL41	HGNC	ENSG00000229117	tier1	-	-	51	0	0.00	18	48	72.73
HIST1H3B	0	genome.wustl.edu	37	6	26032209	26032209	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	6	26032209	26032209	C	G	SNP	HIST1H3B	ENST00000244661	human	ensembl	74_37	-1	known	missense	c.80	p.R27P	1.000	superfamily_Histone-fold,prints_Histone_H3	pfam_Histone_core_D,superfamily_Histone-fold,smart_Histone_H3,prints_Histone_H3	-	no_errors	HIST1H3B	HGNC	ENSG00000124693	tier1	-	-	14	0	0.00	44	9	16.98
AHCTF1	0	genome.wustl.edu	37	1	247051817	247051817	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	1	247051817	247051817	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	74_37	-1	known	missense	c.2174	p.G725E	1.000	NULL	superfamily_Quinonprotein_ADH-like_supfam	-	no_errors	AHCTF1	HGNC	ENSG00000153207	tier1	-	-	29	0	0.00	26	6	18.75
SLITRK6	0	genome.wustl.edu	37	13	86369914	86369914	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	13	86369914	86369914	C	T	SNP	SLITRK6	ENST00000400286	human	ensembl	74_37	-1	known	missense	c.730	p.D244N	1.000	smart_Cys-rich_flank_reg_C	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	tier1	-	-	33	0	0.00	30	4	11.76
DIP2B	0	genome.wustl.edu	37	12	51126229	51126229	+	Silent	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	51126229	51126229	C	T	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	silent	c.3891	p.S1297	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	tier1	-	-	47	0	0.00	766	111	12.64
ELN	0	genome.wustl.edu	37	7	73483018	73483018	+	Silent	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	7	73483018	73483018	G	A	SNP	ELN	ENST00000358929	human	ensembl	74_37	+1	known	silent	c.2367	p.R789	1.000	prints_Tropoelastin	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	tier1	-	-	42	0	0.00	35	4	10.26
DACH2	0	genome.wustl.edu	37	X	85769347	85769347	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	X	85769347	85769347	C	T	SNP	DACH2	ENST00000373125	human	ensembl	74_37	+1	known	missense	c.593	p.T198I	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC	ENSG00000126733	tier1	-	-	18	0	0.00	5	21	80.77
CEP164	0	genome.wustl.edu	37	11	117222572	117222572	+	Silent	SNP	A	A	G			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	11	117222572	117222572	A	G	SNP	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	silent	c.261	p.P87	0.006	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274	tier1	-	-	43	0	0.00	39	4	9.30
TMEM150B	0	genome.wustl.edu	37	19	55824327	55824327	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	19	55824327	55824327	A	C	SNP	TMEM150B	ENST00000326652	human	ensembl	74_37	-1	known	missense	c.602	p.V201G	0.808	pfam_Frag1/DRAM/Sfk1	pfam_Frag1/DRAM/Sfk1	-	no_errors	TMEM150B	HGNC	ENSG00000180061	tier1	-	-	44	0	0.00	60	55	47.41
FGF13	0	genome.wustl.edu	37	X	137717813	137717813	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	X	137717813	137717813	G	T	SNP	FGF13	ENST00000370603	human	ensembl	74_37	-1	known	missense	c.436	p.L146I	1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF13	HGNC	ENSG00000129682	tier1	-	-	21	0	0.00	6	5	41.67
GXYLT1	0	genome.wustl.edu	37	12	42512817	42512817	+	Silent	SNP	A	A	G			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	42512817	42512817	A	G	SNP	GXYLT1	ENST00000398675	human	ensembl	74_37	-1	known	silent	c.471	p.H157	0.063	NULL	pfam_Glyco_trans_8	-	no_errors	GXYLT1	HGNC	ENSG00000151233	tier1	rs201566551	-	50	0	0.00	60	9	13.04
SLC6A12	0	genome.wustl.edu	37	12	308037	308037	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	308037	308037	C	T	SNP	SLC6A12	ENST00000359674	human	ensembl	74_37	-1	known	missense	c.772	p.V258I	0.168	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_betaine	-	no_errors	SLC6A12	HGNC	ENSG00000111181	tier1	-	-	35	0	0.00	28	5	15.15
TCEB3	0	genome.wustl.edu	37	1	24078271	24078271	+	Silent	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	1	24078271	24078271	G	A	SNP	TCEB3	ENST00000418390	human	ensembl	74_37	+1	known	silent	c.1254	p.E418	0.942	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub,pfscan_F-box_dom	-	no_errors	TCEB3	HGNC	ENSG00000011007	tier1	-	-	24	0	0.00	20	8	28.57
TTN	0	genome.wustl.edu	37	2	179641959	179641959	+	Silent	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	2	179641959	179641959	G	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.4731	p.V1577	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	37	0	0.00	37	16	30.19
OR8K3	0	genome.wustl.edu	37	11	56085826	56085826	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	11	56085826	56085826	C	T	SNP	OR8K3	ENST00000312711	human	ensembl	74_37	+1	known	missense	c.44	p.T15M	0.330	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8K3	HGNC	ENSG00000181689	tier1	rs149952066	-	34	0	0.00	14	18	56.25
OR5H1	0	genome.wustl.edu	37	3	97852060	97852060	+	Silent	SNP	A	A	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	3	97852060	97852060	A	T	SNP	OR5H1	ENST00000354565	human	ensembl	74_37	+1	known	silent	c.519	p.I173	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	tier1	-	-	54	0	0.00	36	13	26.53
DCAF8L2	0	genome.wustl.edu	37	X	27766740	27766740	+	Silent	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	X	27766740	27766740	C	T	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	silent	c.1728	p.D576	0.031	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186	tier1	-	-	20	0	0.00	16	8	32.00
RN7SL319P	0	genome.wustl.edu	37	15	76077689	76077690	+	RNA	INS	-	-	G			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	15	76077689	76077690	-	G	INS	RN7SL319P	ENST00000480656	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.981:0.985	-	-	-	no_errors	RN7SL319P	HGNC	ENSG00000241807	tier1			14	0	0.00	23	11	32.35
LRP1B	0	genome.wustl.edu	37	2	141625271	141625271	+	Silent	SNP	G	G	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	2	141625271	141625271	G	C	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.4467	p.T1489	0.996	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	66	0	0.00	59	53	47.32
TNS3	0	genome.wustl.edu	37	7	47385934	47385934	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	7	47385934	47385934	G	-	DEL	TNS3	ENST00000311160	human	ensembl	74_37	-1	known	frame_shift_del	c.2302	p.L768fs	0.000	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_dom,smart_Tyr_Pase_cat,smart_SH2,smart_PTB/PI_dom,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	tier1			21	0	0.00	13	7	35.00
AP3D1	0	genome.wustl.edu	37	19	2129123	2129123	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	19	2129123	2129123	T	C	SNP	AP3D1	ENST00000355272	human	ensembl	74_37	-1	known	missense	c.772	p.K258E	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	pfam_BLV_receptor,pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_complex_dsu	-	no_errors	AP3D1	HGNC	ENSG00000065000	tier1	-	-	41	0	0.00	67	55	45.08
KRT1	0	genome.wustl.edu	37	12	53069189	53069190	+	In_Frame_Ins	INS	-	-	GCC			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	53069189	53069190	-	GCC	INS	KRT1	ENST00000252244	human	ensembl	74_37	-1	known	in_frame_ins	c.1723_1722	p.574in_frame_insG	0.358:0.643	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	tier1			31	0	0.00	243	26	9.67
ANK3	0	genome.wustl.edu	37	10	62021640	62021640	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	10	62021640	62021640	C	A	SNP	ANK3	ENST00000280772	human	ensembl	74_37	-1	known	missense	c.775	p.A259S	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK3	HGNC	ENSG00000151150	tier1	-	-	35	0	0.00	25	8	24.24
SCARNA22	0	genome.wustl.edu	37	4	1976385	1976385	+	RNA	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	4	1976385	1976385	C	T	SNP	SCARNA22	ENST00000503991	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SCARNA22	HGNC	ENSG00000249784	tier1	-	-	48	0	0.00	99	23	18.85
FBN3	0	genome.wustl.edu	37	19	8171060	8171060	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	19	8171060	8171060	G	A	SNP	FBN3	ENST00000270509	human	ensembl	74_37	-1	known	missense	c.4745	p.T1582M	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pirsf_FBN,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,pfam_TB_dom,pfam_EG-like_dom,superfamily_TB_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pirsf_FBN,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	tier1	-	-	23	0	0.00	33	14	29.79
WHSC1	0	genome.wustl.edu	37	4	1977056	1977056	+	Silent	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	4	1977056	1977056	C	T	SNP	WHSC1	ENST00000382891	human	ensembl	74_37	+1	known	silent	c.3550	p.L1184	0.936	smart_SET_dom,pfscan_SET_dom	pfam_PWWP_dom,pfam_SET_dom,pfam_Znf_PHD-finger,pfam_HMG_box_dom,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_PWWP_dom,smart_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_AWS,smart_SET_dom,smart_Post-SET_dom,pfscan_AWS,pfscan_PWWP_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_RING,pfscan_HMG_box_dom	-	no_errors	WHSC1	HGNC	ENSG00000109685	tier1	-	-	56	0	0.00	84	16	16.00
SYNE1	0	genome.wustl.edu	37	6	152485354	152485354	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	6	152485354	152485354	T	C	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.23734	p.I7912V	0.997	pfam_Spectrin_repeat,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	tier1	-	-	51	0	0.00	69	22	24.18
PA2G4	0	genome.wustl.edu	37	12	56501332	56501332	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	56501332	56501332	G	A	SNP	PA2G4	ENST00000303305	human	ensembl	74_37	+1	known	missense	c.421	p.D141N	1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	-	no_errors	PA2G4	HGNC	ENSG00000170515	tier1	-	-	38	0	0.00	42	69	62.16
CLEC1A	0	genome.wustl.edu	37	12	10228209	10228209	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	10228209	10228209	T	C	SNP	CLEC1A	ENST00000315330	human	ensembl	74_37	-1	known	missense	c.437	p.D146G	0.978	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	CLEC1A	HGNC	ENSG00000150048	tier1	-	-	29	0	0.00	16	9	36.00
ZNF443	0	genome.wustl.edu	37	19	12541977	12541977	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	19	12541977	12541977	A	G	SNP	ZNF443	ENST00000301547	human	ensembl	74_37	-1	known	missense	c.1009	p.Y337H	0.156	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF443	HGNC	ENSG00000180855	tier1	-	-	84	0	0.00	185	58	23.87
RXRA	0	genome.wustl.edu	37	9	137330688	137330689	+	RNA	INS	-	-	GCTGGCTG			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	9	137330688	137330689	-	GCTGGCTG	INS	RXRA	ENST00000356384	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007:0.001	-	-	-	no_errors	RXRA	HGNC	ENSG00000186350	tier1			NA	NA	NA	NA	NA	NA
MAP1A	0	genome.wustl.edu	37	15	43815590	43815590	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	15	43815590	43815590	C	T	SNP	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	missense	c.1919	p.A640V	0.668	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	tier1	-	-	19	0	0.00	13	11	45.83
DOCK2	0	genome.wustl.edu	37	5	169494557	169494557	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	5	169494557	169494557	C	T	SNP	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	missense	c.4511	p.T1504M	0.003	pfam_DOCK_C	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	tier1	rs201320169	GMAF=0.0005	51	0	0.00	60	24	28.57
MYLK3	0	genome.wustl.edu	37	16	46766264	46766264	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	16	46766264	46766264	C	A	SNP	MYLK3	ENST00000394809	human	ensembl	74_37	-1	known	missense	c.1318	p.V440F	0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MYLK3	HGNC	ENSG00000140795	tier1	-	-	36	0	0.00	66	22	25.00
ANO4	0	genome.wustl.edu	37	12	101490347	101490347	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	101490347	101490347	G	T	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	missense	c.1772	p.S591I	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	tier1	-	-	38	0	0.00	45	4	8.16
NUP188	0	genome.wustl.edu	37	9	131730948	131730948	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	9	131730948	131730948	A	G	SNP	NUP188	ENST00000372577	human	ensembl	74_37	+1	known	missense	c.749	p.N250S	1.000	pfam_Nucleoporin_Nup188	pfam_Nucleoporin_Nup188,superfamily_ARM-type_fold	-	no_errors	NUP188	HGNC	ENSG00000095319	tier1	-	-	29	0	0.00	27	19	41.30
PA2G4	0	genome.wustl.edu	37	12	56501326	56501327	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	56501326	56501327	AA	-	DEL	PA2G4	ENST00000303305	human	ensembl	74_37	+1	known	frame_shift_del	c.415_416	p.K139fs	1.000:1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	-	no_errors	PA2G4	HGNC	ENSG00000170515	tier1			37	0	0.00	64	69	51.88
DOCK7	0	genome.wustl.edu	37	1	62961254	62961254	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	1	62961254	62961254	G	T	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	nonsense	c.4995	p.Y1665*	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	tier1	-	-	27	0	0.00	39	4	9.30
PDGFD	0	genome.wustl.edu	37	11	103866875	103866875	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	11	103866875	103866875	C	T	SNP	PDGFD	ENST00000393158	human	ensembl	74_37	-1	known	missense	c.428	p.R143K	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFD	HGNC	ENSG00000170962	tier1	-	-	53	0	0.00	35	4	10.26
LY75	0	genome.wustl.edu	37	2	160721358	160721358	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	2	160721358	160721358	G	A	SNP	LY75	ENST00000554112	human	ensembl	74_37	-1	known	missense	c.2191	p.R731C	0.019	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	tier1	-	-	49	0	0.00	63	7	10.00
ZC3H12C	0	genome.wustl.edu	37	11	110035683	110035683	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	11	110035683	110035683	G	A	SNP	ZC3H12C	ENST00000278590	human	ensembl	74_37	+1	known	missense	c.1873	p.D625N	0.995	NULL	pfam_RNase_Zc3h12	-	no_errors	ZC3H12C	HGNC	ENSG00000149289	tier1	-	-	31	0	0.00	8	8	50.00
MYO5B	0	genome.wustl.edu	37	18	47431107	47431107	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	18	47431107	47431107	G	A	SNP	MYO5B	ENST00000285039	human	ensembl	74_37	-1	known	missense	c.2506	p.R836C	0.002	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5B	HGNC	ENSG00000167306	tier1	-	-	67	0	0.00	47	41	46.59
FLRT2	0	genome.wustl.edu	37	14	86089224	86089224	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	14	86089224	86089224	A	C	SNP	FLRT2	ENST00000330753	human	ensembl	74_37	+1	known	missense	c.1366	p.K456Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3	-	no_errors	FLRT2	HGNC	ENSG00000185070	tier1	-	-	27	0	0.00	9	6	40.00
PRPF18	0	genome.wustl.edu	37	10	13642315	13642315	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	10	13642315	13642315	G	T	SNP	PRPF18	ENST00000378572	human	ensembl	74_37	+1	known	missense	c.216	p.E72D	0.993	NULL	pfam_Prp18,pfam_PRP4-like,superfamily_Prp18,smart_SFM	-	no_errors	PRPF18	HGNC	ENSG00000165630	tier1	-	-	40	0	0.00	36	4	10.00
FGF13	0	genome.wustl.edu	37	X	137717812	137717861	+	Frame_Shift_Del	DEL	AGTTCCTGCAACAAAAGTAAATAAACAAAAGTTCAGTGTTTATAGCTATG	AGTTCCTGCAACAAAAGTAAATAAACAAAAGTTCAGTGTTTATAGCTATG	-			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	AGTTCCTGCAACAAAAGTAAATAAACAAAAGTTCAGTGTTTATAGCTATG	AGTTCCTGCAACAAAAGTAAATAAACAAAAGTTCAGTGTTTATAGCTATG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	X	137717812	137717861	AGTTCCTGCAACAAAAGTAAATAAACAAAAGTTCAGTGTTTATAGCTATG	-	DEL	FGF13	ENST00000370603	human	ensembl	74_37	-1	known	frame_shift_del	c.437_433	p.E145fs	1.000:1.000:1.000:1.000:1.000	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam	pfam_Fibroblast_GF_fam,superfamily_Cytokine_IL1-like,smart_Fibroblast_GF_fam,prints_IL-1_fam/FGF_fam,prints_Fibroblast_GF_fam	-	no_errors	FGF13	HGNC	ENSG00000129682	tier1			NA	NA	NA	NA	NA	NA
LOC101927832	0	genome.wustl.edu	37	3	142720221	142720222	+	RNA	INS	-	-	GGACAACGA			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	3	142720221	142720222	-	GGACAACGA	INS	LOC101927832	ENST00000595248	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.015	-	-	-	no_errors	RP11-372E1.6	Clone_based_vega_gene	ENSG00000241570	tier1			NA	NA	NA	NA	NA	NA
OCM2	0	genome.wustl.edu	37	7	97616381	97616381	+	Silent	SNP	T	T	G			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	7	97616381	97616381	T	G	SNP	OCM2	ENST00000257627	human	ensembl	74_37	-1	known	silent	c.282	p.G94	0.997	smart_EF_hand_dom,pfscan_EF_hand_dom	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	OCM2	HGNC	ENSG00000135175	tier1	-	-	73	0	0.00	53	31	36.90
RBAK	0	genome.wustl.edu	37	7	5103562	5103562	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	7	5103562	5103562	A	G	SNP	RBAK	ENST00000353796	human	ensembl	74_37	+1	known	missense	c.475	p.R159G	0.016	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587	tier1	-	-	41	0	0.00	57	10	14.93
MAPK6	0	genome.wustl.edu	37	15	52356317	52356317	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	15	52356317	52356317	A	T	SNP	MAPK6	ENST00000261845	human	ensembl	74_37	+1	known	missense	c.1286	p.D429V	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_MAPK_ERK3/4	-	no_errors	MAPK6	HGNC	ENSG00000069956	tier1	-	-	53	0	0.00	27	45	62.50
PRB3	0	genome.wustl.edu	37	12	11420585	11420585	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	11420585	11420585	G	A	SNP	PRB3	ENST00000381842	human	ensembl	74_37	-1	known	missense	c.598	p.R200C	0.000	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870	tier1	-	-	46	0	0.00	64	11	14.67
ENSG00000244327	0	genome.wustl.edu	37	3	142184164	142184164	+	RNA	DEL	A	A	-			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	3	142184164	142184164	A	-	DEL	ENSG00000244327	ENST00000460977	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-383G6.3	Clone_based_vega_gene	ENSG00000244327	tier1			29	0	0.00	17	3	15.00
TMEM57	0	genome.wustl.edu	37	1	25773365	25773365	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	1	25773365	25773365	G	T	SNP	TMEM57	ENST00000374343	human	ensembl	74_37	+1	known	missense	c.193	p.V65F	1.000	pfam_Macoilin	pfam_Macoilin,superfamily_Prefoldin	-	no_errors	TMEM57	HGNC	ENSG00000204178	tier1	-	-	47	0	0.00	57	16	21.92
STAB2	0	genome.wustl.edu	37	12	104099506	104099506	+	Splice_Site	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	104099506	104099506	G	T	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	splice_site	c.3996+1	e37+1	1.000	-	-	-	no_errors	STAB2	HGNC	ENSG00000136011	tier1	-	-	46	0	0.00	34	4	10.53
CDH7	0	genome.wustl.edu	37	18	63489324	63489324	+	Silent	SNP	C	C	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	18	63489324	63489324	C	A	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	silent	c.633	p.I211	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	tier1	-	-	35	0	0.00	27	10	27.03
TRAK1	0	genome.wustl.edu	37	3	42265243	42265243	+	RNA	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	3	42265243	42265243	G	A	SNP	TRAK1	ENST00000487159	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TRAK1	HGNC	ENSG00000182606	tier1	-	-	11	0	0.00	22	11	33.33
GPRIN1	0	genome.wustl.edu	37	5	176026016	176026016	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	5	176026016	176026016	C	T	SNP	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	missense	c.820	p.A274T	0.000	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	tier1	-	-	63	0	0.00	24	38	61.29
PA2G4	0	genome.wustl.edu	37	12	56501329	56501330	+	Frame_Shift_Ins	INS	-	-	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	12	56501329	56501330	-	C	INS	PA2G4	ENST00000303305	human	ensembl	74_37	+1	known	frame_shift_ins	c.418_419	p.D141fs	1.000:1.000	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	pfam_Pept_M24_structural-domain,superfamily_Pept_M24_structural-domain,tigrfam_Pap_1	-	no_errors	PA2G4	HGNC	ENSG00000170515	tier1			35	0	0.00	45	69	60.53
PRPS1	0	genome.wustl.edu	37	X	106884290	106884299	+	Frame_Shift_Del	DEL	GAAGACTGCA	GAAGACTGCA	-			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	GAAGACTGCA	GAAGACTGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	X	106884290	106884299	GAAGACTGCA	-	DEL	PRPS1	ENST00000372419	human	ensembl	74_37	+1	known	frame_shift_del	c.465_474	p.K156fs	0.007:0.002:0.001:0.000:0.000:0.000:0.000:0.000:0.080:0.156	NULL	tigrfam_Rib-P_diPkinase	-	no_errors	PRPS1	HGNC	ENSG00000147224	tier1			NA	NA	NA	NA	NA	NA
SFMBT2	0	genome.wustl.edu	37	10	7326112	7326112	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	10	7326112	7326112	G	T	SNP	SFMBT2	ENST00000361972	human	ensembl	74_37	-1	known	missense	c.526	p.P176T	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	tier1	-	-	41	0	0.00	37	4	9.76
PDGFD	0	genome.wustl.edu	37	11	103866883	103866883	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	11	103866883	103866883	T	C	SNP	PDGFD	ENST00000393158	human	ensembl	74_37	-1	known	missense	c.420	p.I140M	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_PDGF/VEGF_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_PDGF/VEGF_dom	-	no_errors	PDGFD	HGNC	ENSG00000170962	tier1	-	-	54	0	0.00	35	4	10.26
PAPD7	0	genome.wustl.edu	37	5	6753031	6753031	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	5	6753031	6753031	C	G	SNP	PAPD7	ENST00000230859	human	ensembl	74_37	+1	known	missense	c.1315	p.P439A	0.978	NULL	pfam_PAP_assoc,pfam_Nucleotidyltransferase	-	no_errors	PAPD7	HGNC	ENSG00000112941	tier1	-	-	54	0	0.00	98	25	20.33
CP	0	genome.wustl.edu	37	3	148923962	148923962	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	3	148923962	148923962	G	T	SNP	CP	ENST00000264613	human	ensembl	74_37	-1	known	missense	c.1201	p.P401T	0.777	superfamily_Cupredoxin	pfam_Cu-oxidase_2,pfam_Cu-oxidase_3,pfam_Cu-oxidase,superfamily_Cupredoxin	-	no_errors	CP	HGNC	ENSG00000047457	tier1	-	-	31	0	0.00	42	4	8.70
DPP6	0	genome.wustl.edu	37	7	154598776	154598776	+	Silent	SNP	C	C	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	7	154598776	154598776	C	T	SNP	DPP6	ENST00000377770	human	ensembl	74_37	+1	known	silent	c.1620	p.S540	0.841	pfam_Peptidase_S9B	pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_PD40	-	no_errors	DPP6	HGNC	ENSG00000130226	tier1	-	-	17	0	0.00	23	6	20.69
MAX	0	genome.wustl.edu	37	14	65544060	65544060	+	Splice_Site	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	14	65544060	65544060	G	T	SNP	MAX	ENST00000394606	human	ensembl	74_37	-1	known	splice_site	c.312+2	e5+2	1.000	-	-	-	no_errors	MAX	HGNC	ENSG00000125952	tier1	-	-	34	0	0.00	18	3	14.29
AFP	0	genome.wustl.edu	37	4	74303891	74303891	+	Silent	SNP	G	G	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	4	74303891	74303891	G	C	SNP	AFP	ENST00000395792	human	ensembl	74_37	+1	known	silent	c.138	p.L46	1.000	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP	pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,pirsf_Serum_albumin/AFP,prints_Alpha-fetoprotein,prints_ALB/AFP/VDB	-	no_errors	AFP	HGNC	ENSG00000081051	tier1	-	-	25	0	0.00	37	15	28.85
ITSN1	0	genome.wustl.edu	37	21	35195916	35195916	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	21	35195916	35195916	G	A	SNP	ITSN1	ENST00000381285	human	ensembl	74_37	+1	known	missense	c.3142	p.G1048R	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_SH3_domain,pfam_SH3_2,pfam_DH-domain,pfam_C2_dom,superfamily_DH-domain,superfamily_C2_dom,superfamily_SH3_domain,superfamily_P-loop_NTPase,smart_EPS15_homology,smart_EF_hand_dom,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,smart_C2_dom,pfscan_EF_hand_dom,pfscan_EPS15_homology,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_p67phox	-	no_errors	ITSN1	HGNC	ENSG00000205726	tier1	-	-	69	0	0.00	80	48	37.50
SYNE1	0	genome.wustl.edu	37	6	152651745	152651745	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	6	152651745	152651745	G	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	missense	c.14075	p.A4692D	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	tier1	-	-	8	0	0.00	8	4	33.33
TUBB2B	0	genome.wustl.edu	37	6	3225580	3225580	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	6	3225580	3225580	G	A	SNP	TUBB2B	ENST00000259818	human	ensembl	74_37	-1	known	missense	c.743	p.A248V	1.000	superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Gamma_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285	tier1	-	-	17	0	0.00	28	7	20.00
ENSG00000196096	0	genome.wustl.edu	37	2	214142637	214142638	+	RNA	INS	-	-	CTTCACGGCAGCC			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	2	214142637	214142638	-	CTTCACGGCAGCC	INS	ENSG00000196096	ENST00000360083	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005:0.003	-	-	-	no_errors	AC079610.2	Clone_based_vega_gene	ENSG00000196096	tier1			NA	NA	NA	NA	NA	NA
GP6	0	genome.wustl.edu	37	19	55530046	55530046	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	19	55530046	55530046	G	C	SNP	GP6	ENST00000310373	human	ensembl	74_37	-1	known	nonsense	c.698	p.S233*	0.000	NULL	smart_Ig_sub,smart_Ig_sub2	-	no_errors	GP6	HGNC	ENSG00000088053	tier1	-	-	40	0	0.00	49	18	26.87
ENSG00000257931	0	genome.wustl.edu	37	14	19969052	19969053	+	RNA	INS	-	-	T			TCGA-DX-A1KW-01A-22D-A24N-09	TCGA-DX-A1KW-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	63db50d6-5ef2-44d0-9906-26eae74ecf44	02de8a64-bd6d-46da-9fc5-81d2a543e25b	14	19969052	19969053	-	T	INS	ENSG00000257931	ENST00000547399	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.098:0.090	-	-	-	no_errors	CTD-2311B13.7	Clone_based_vega_gene	ENSG00000257931	tier1			8	0	0.00	5	3	37.50
