Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FAM115C	0	genome.wustl.edu	37	7	143417404	143417405	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	7	143417404	143417405	CT	-	DEL	FAM115C	ENST00000441159	human	ensembl	74_37	+1	known	frame_shift_del	c.1252_1253	p.Q420fs	0.084:0.101	NULL	NULL	-	no_errors	FAM115C	HGNC	ENSG00000170379	tier1			15	0	0.00	13	9	40.91
MT-RNR2	0	genome.wustl.edu	37	MT	2665	2665	+	RNA	SNP	T	T	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	MT	2665	2665	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	646	0	0.00	356	46	11.41
TNPO3	0	genome.wustl.edu	37	7	128619088	128619088	+	Silent	SNP	A	A	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	7	128619088	128619088	A	C	SNP	TNPO3	ENST00000393245	human	ensembl	74_37	-1	known	silent	c.2112	p.V704	0.991	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,superfamily_ARM-type_fold	-	no_errors	TNPO3	HGNC	ENSG00000064419	tier1	-	-	41	0	0.00	34	5	12.82
CXorf27	0	genome.wustl.edu	37	X	37850229	37850229	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	X	37850229	37850229	G	T	SNP	CXorf27	ENST00000341016	human	ensembl	74_37	+1	known	missense	c.137	p.S46I	0.000	superfamily_Histone-fold	superfamily_Histone-fold	-	no_errors	CXorf27	HGNC	ENSG00000187516	tier1	-	-	19	0	0.00	71	15	17.24
AMT	0	genome.wustl.edu	37	3	49459474	49459474	+	Silent	SNP	A	A	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	3	49459474	49459474	A	T	SNP	AMT	ENST00000399379	human	ensembl	74_37	-1	known	silent	c.99	p.T33	0.000	NULL	NULL	-	no_errors	AMT	HGNC	ENSG00000145020	tier1	-	-	51	0	0.00	2	15	88.24
CD63	0	genome.wustl.edu	37	12	56120701	56120701	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	12	56120701	56120701	G	A	SNP	CD63	ENST00000550050	human	ensembl	74_37	-1	known	missense	c.302	p.P101L	1.000	NULL	pfam_Tetraspanin/Peripherin,prints_Tetraspanin	-	no_errors	CD63	HGNC	ENSG00000135404	tier1	-	-	40	0	0.00	20	13	39.39
GCNT2	0	genome.wustl.edu	37	6	10529549	10529549	+	Silent	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	6	10529549	10529549	C	A	SNP	GCNT2	ENST00000379597	human	ensembl	74_37	+1	known	silent	c.405	p.A135	0.000	pfam_Glyco_trans_14	pfam_Glyco_trans_14	-	no_errors	GCNT2	HGNC	ENSG00000111846	tier1	-	-	37	0	0.00	25	5	16.67
CELSR2	0	genome.wustl.edu	37	1	109804139	109804139	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	109804139	109804139	G	A	SNP	CELSR2	ENST00000271332	human	ensembl	74_37	+1	known	missense	c.4186	p.A1396T	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR2	HGNC	ENSG00000143126	tier1	-	-	82	0	0.00	33	9	21.43
COL11A2	0	genome.wustl.edu	37	6	33131576	33131576	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	6	33131576	33131576	A	G	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.5090	p.V1697A	1.000	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	tier1	-	-	91	0	0.00	27	16	36.36
POLR3C	0	genome.wustl.edu	37	1	145594902	145594902	+	RNA	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	145594902	145594902	G	T	SNP	POLR3C	ENST00000489436	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	POLR3C	HGNC	ENSG00000186141	tier1	-	-	18	0	0.00	52	17	24.64
LINS	0	genome.wustl.edu	37	15	101113767	101113767	+	Nonstop_Mutation	SNP	T	T	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	15	101113767	101113767	T	G	SNP	LINS	ENST00000561308	human	ensembl	74_37	-1	known	nonstop	c.1311	p.*437Y	0.001	NULL	NULL	-	no_errors	LINS	HGNC	ENSG00000140471	tier1	-	-	50	0	0.00	23	3	11.54
SYNE1	0	genome.wustl.edu	37	6	152466656	152466656	+	Silent	SNP	T	T	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	6	152466656	152466656	T	C	SNP	SYNE1	ENST00000423061	human	ensembl	74_37	-1	known	silent	c.24798	p.V8266	1.000	NULL	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	tier1	-	-	72	0	0.00	20	10	33.33
HLA-V	0	genome.wustl.edu	37	6	29765087	29765087	+	RNA	DEL	T	T	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	6	29765087	29765087	T	-	DEL	HLA-V	ENST00000457107	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	HLA-V	HGNC	ENSG00000181126	tier1			48	0	0.00	20	3	13.04
TP53BP1	0	genome.wustl.edu	37	15	43739389	43739389	+	RNA	SNP	A	A	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	15	43739389	43739389	A	G	SNP	TP53BP1	ENST00000414758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TP53BP1	HGNC	ENSG00000067369	tier1	-	-	14	0	0.00	9	6	40.00
CCDC176	0	genome.wustl.edu	37	14	74512807	74512808	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	14	74512807	74512808	AG	-	DEL	CCDC176	ENST00000394009	human	ensembl	74_37	+1	known	frame_shift_del	c.621_622	p.R209fs	1.000:1.000	NULL	NULL	-	no_errors	CCDC176	HGNC	ENSG00000119636	tier1			36	0	0.00	21	2	8.70
ENSG00000271959	0	genome.wustl.edu	37	8	142445804	142445804	+	RNA	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	8	142445804	142445804	C	T	SNP	ENSG00000271959	ENST00000606664	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-3064M3.7	Clone_based_vega_gene	ENSG00000271959	tier1	-	-	36	0	0.00	51	10	16.39
CTDSP2	0	genome.wustl.edu	37	12	58223339	58223340	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	12	58223339	58223340	AC	-	DEL	CTDSP2	ENST00000398073	human	ensembl	74_37	-1	known	frame_shift_del	c.105_104	p.R35fs	0.992:1.000	NULL	pfam_NIF,superfamily_HAD-like_dom,smart_NIF,pfscan_NIF,tigrfam_Dullard_phosphatase	-	no_errors	CTDSP2	HGNC	ENSG00000175215	tier1			99	0	0.00	41	38	48.10
TP53TG3D	0	genome.wustl.edu	37	16	32265770	32265770	+	Silent	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	16	32265770	32265770	C	T	SNP	TP53TG3D	ENST00000563025	human	ensembl	74_37	+1	known	silent	c.294	p.C98	0.026	NULL	NULL	-	no_errors	TP53TG3D	HGNC	ENSG00000205456	tier1	-	-	210	0	0.00	41	40	49.38
OR52N5	0	genome.wustl.edu	37	11	5799652	5799652	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	5799652	5799652	A	-	DEL	OR52N5	ENST00000317093	human	ensembl	74_37	-1	known	frame_shift_del	c.213	p.F71fs	0.971	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR52N5	HGNC	ENSG00000181009	tier1			34	0	0.00	18	3	14.29
TCHHL1	0	genome.wustl.edu	37	1	152059914	152059914	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	152059914	152059914	T	A	SNP	TCHHL1	ENST00000368806	human	ensembl	74_37	-1	known	missense	c.244	p.N82Y	0.974	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	tier1	-	-	83	0	0.00	134	15	10.07
SEMA5A	0	genome.wustl.edu	37	5	9054348	9054348	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	5	9054348	9054348	C	A	SNP	SEMA5A	ENST00000382496	human	ensembl	74_37	-1	known	missense	c.2540	p.W847L	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semap_dom,pfam_Thrombospondin_1_rpt,superfamily_Semap_dom,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Thrombospondin_1_rpt,pfscan_Semap_dom,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	tier1	-	-	34	0	0.00	18	8	30.77
SULT2A1	0	genome.wustl.edu	37	19	48386833	48386833	+	Splice_Site	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	19	48386833	48386833	C	A	SNP	SULT2A1	ENST00000222002	human	ensembl	74_37	-1	known	splice_site	c.345+1	e2+1	1.000	-	-	-	no_errors	SULT2A1	HGNC	ENSG00000105398	tier1	-	-	83	0	0.00	35	24	40.68
SLC32A1	0	genome.wustl.edu	37	20	37356949	37356949	+	Silent	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	20	37356949	37356949	C	T	SNP	SLC32A1	ENST00000217420	human	ensembl	74_37	+1	known	silent	c.1245	p.R415	0.998	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC32A1	HGNC	ENSG00000101438	tier1	-	-	76	0	0.00	41	20	32.79
IGF2R	0	genome.wustl.edu	37	6	160482875	160482875	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	6	160482875	160482875	C	G	SNP	IGF2R	ENST00000356956	human	ensembl	74_37	+1	known	missense	c.3497	p.S1166C	0.921	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	tier1	-	-	100	0	0.00	31	27	46.55
SLIT3	0	genome.wustl.edu	37	5	168151482	168151482	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	5	168151482	168151482	C	G	SNP	SLIT3	ENST00000519560	human	ensembl	74_37	-1	known	missense	c.2278	p.E760Q	1.000	NULL	pfam_EG-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347	tier1	-	-	58	0	0.00	29	17	36.96
MATK	0	genome.wustl.edu	37	19	3779407	3779407	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	19	3779407	3779407	C	A	SNP	MATK	ENST00000395045	human	ensembl	74_37	-1	known	missense	c.973	p.V325L	0.769	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	MATK	HGNC	ENSG00000007264	tier1	-	-	46	0	0.00	7	9	56.25
VSTM2L	0	genome.wustl.edu	37	20	36561976	36561976	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	20	36561976	36561976	G	C	SNP	VSTM2L	ENST00000373461	human	ensembl	74_37	+1	known	missense	c.327	p.E109D	0.962	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	VSTM2L	HGNC	ENSG00000132821	tier1	-	-	23	0	0.00	11	11	50.00
CNTNAP3	0	genome.wustl.edu	37	9	39174372	39174372	+	RNA	SNP	T	T	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	39174372	39174372	T	A	SNP	CNTNAP3	ENST00000377653	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.776	-	-	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	tier1	rs200822754	-	42	0	0.00	14	3	16.67
RYR2	0	genome.wustl.edu	37	1	237666727	237666727	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	237666727	237666727	T	-	DEL	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	frame_shift_del	c.2529	p.Y844fs	0.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	tier1			56	0	0.00	17	2	10.53
CAMTA1	0	genome.wustl.edu	37	1	7805021	7805021	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	7805021	7805021	A	G	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	missense	c.4309	p.M1437V	1.000	NULL	pfam_CG-1_dom,pfam_IPT,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,superfamily_P-loop_NTPase,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA1	HGNC	ENSG00000171735	tier1	-	-	49	0	0.00	13	12	48.00
C9orf147	0	genome.wustl.edu	37	9	115248931	115248931	+	RNA	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	115248931	115248931	G	A	SNP	C9orf147	ENST00000463223	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C9orf147	HGNC	ENSG00000230185	tier1	-	-	44	0	0.00	15	8	34.78
ADORA3	0	genome.wustl.edu	37	1	112045735	112045735	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	112045735	112045735	T	C	SNP	ADORA3	ENST00000369716	human	ensembl	74_37	-1	known	missense	c.242	p.Y81C	0.992	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Adeno_A3_rcpt,prints_GPCR_Rhodpsn	-	no_errors	ADORA3	HGNC	ENSG00000121933	tier1	-	-	74	0	0.00	24	5	17.24
MCM5	0	genome.wustl.edu	37	22	35804413	35804413	+	Silent	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	22	35804413	35804413	G	A	SNP	MCM5	ENST00000216122	human	ensembl	74_37	+1	known	silent	c.609	p.G203	0.971	superfamily_NA-bd_OB-fold,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM5,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM5	HGNC	ENSG00000100297	tier1	-	-	109	0	0.00	62	30	32.61
MUC5B	0	genome.wustl.edu	37	11	1271465	1271465	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	1271465	1271465	A	G	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.13364	p.E4455G	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	tier1	-	-	123	0	0.00	34	26	42.62
BPIFB4	0	genome.wustl.edu	37	20	31671211	31671211	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	20	31671211	31671211	G	T	SNP	BPIFB4	ENST00000375483	human	ensembl	74_37	+1	known	nonsense	c.208	p.G70*	0.470	NULL	pfam_Lipid-bd_serum_glycop_N,pfam_Lipid-bd_serum_glycop_C,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	BPIFB4	HGNC	ENSG00000186191	tier1	-	-	46	0	0.00	29	9	23.68
OR51B6	0	genome.wustl.edu	37	11	5372976	5372976	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	5372976	5372976	T	A	SNP	OR51B6	ENST00000380219	human	ensembl	74_37	+1	known	missense	c.239	p.L80Q	0.168	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR51B6	HGNC	ENSG00000176239	tier1	-	-	88	0	0.00	23	26	53.06
ENSG00000215954	0	genome.wustl.edu	37	11	112118610	112118617	+	RNA	DEL	ACACACAC	ACACACAC	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	ACACACAC	ACACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	112118610	112118617	ACACACAC	-	DEL	ENSG00000215954	ENST00000401135	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.028:0.021:0.024:0.025:0.042:0.052:0.057:0.059	-	-	-	no_errors	AP002884.1	Clone_based_ensembl_gene	ENSG00000215954	tier1			NA	NA	NA	NA	NA	NA
STAG1	0	genome.wustl.edu	37	3	136152441	136152441	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	3	136152441	136152441	G	T	SNP	STAG1	ENST00000383202	human	ensembl	74_37	-1	known	missense	c.1607	p.A536D	1.000	superfamily_ARM-type_fold	pfam_STAG,superfamily_ARM-type_fold	-	no_errors	STAG1	HGNC	ENSG00000118007	tier1	-	-	40	0	0.00	32	4	11.11
POLD1	0	genome.wustl.edu	37	19	50909545	50909545	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	19	50909545	50909545	G	C	SNP	POLD1	ENST00000440232	human	ensembl	74_37	+1	known	missense	c.1349	p.S450T	1.000	pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLD1	HGNC	ENSG00000062822	tier1	-	-	123	0	0.00	71	14	16.47
ATXN3L	0	genome.wustl.edu	37	X	13337747	13337747	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	X	13337747	13337747	C	T	SNP	ATXN3L	ENST00000380622	human	ensembl	74_37	-1	known	missense	c.307	p.G103S	0.029	pfam_Josephin,pfscan_Josephin	pfam_Josephin,pfam_Ubiquitin-int_motif,smart_Ubiquitin-int_motif,prints_Josephin,pfscan_Josephin,pfscan_Ubiquitin-int_motif	-	no_errors	ATXN3L	HGNC	ENSG00000123594	tier1	rs199861470	-	22	0	0.00	12	3	20.00
SLFN5	0	genome.wustl.edu	37	17	33592430	33592430	+	Silent	SNP	T	T	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	17	33592430	33592430	T	G	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	silent	c.2199	p.P733	0.037	superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750	tier1	-	-	80	0	0.00	32	7	17.95
KCNK4	0	genome.wustl.edu	37	11	64064689	64064689	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	64064689	64064689	G	T	SNP	KCNK4	ENST00000394525	human	ensembl	74_37	+1	known	missense	c.412	p.V138F	1.000	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl_TASK	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK4	HGNC	ENSG00000182450	tier1	-	-	55	0	0.00	19	11	36.67
FAM47A	0	genome.wustl.edu	37	X	34149685	34149685	+	Silent	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	X	34149685	34149685	C	T	SNP	FAM47A	ENST00000346193	human	ensembl	74_37	-1	known	silent	c.711	p.P237	0.109	NULL	NULL	-	no_errors	FAM47A	HGNC	ENSG00000185448	tier1	-	-	97	0	0.00	83	93	52.84
B3GNT7	0	genome.wustl.edu	37	2	232262748	232262748	+	Silent	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	2	232262748	232262748	G	A	SNP	B3GNT7	ENST00000287590	human	ensembl	74_37	+1	known	silent	c.318	p.P106	0.405	NULL	pfam_Glyco_trans_31,pfam_Fringe-like	-	no_errors	B3GNT7	HGNC	ENSG00000156966	tier1	-	-	53	0	0.00	24	4	14.29
CTCFL	0	genome.wustl.edu	37	20	56073701	56073701	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	20	56073701	56073701	A	T	SNP	CTCFL	ENST00000423479	human	ensembl	74_37	-1	known	missense	c.1897	p.F633I	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCFL	HGNC	ENSG00000124092	tier1	-	-	59	0	0.00	36	15	29.41
ENSG00000221280	0	genome.wustl.edu	37	12	118604652	118604653	+	RNA	INS	-	-	ACAC			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	12	118604652	118604653	-	ACAC	INS	ENSG00000221280	ENST00000408353	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	AC026366.1	Clone_based_ensembl_gene	ENSG00000221280	tier1			13	0	0.00	9	2	18.18
CAPZA1	0	genome.wustl.edu	37	1	113202197	113202202	+	RNA	DEL	TCTCTC	TCTCTC	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	TCTCTC	TCTCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	113202197	113202202	TCTCTC	-	DEL	CAPZA1	ENST00000466066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.008:0.000:0.000:0.000:0.000	-	-	-	no_errors	CAPZA1	HGNC	ENSG00000116489	tier1			NA	NA	NA	NA	NA	NA
FADS2	0	genome.wustl.edu	37	11	61615735	61615735	+	Silent	SNP	G	G	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	61615735	61615735	G	C	SNP	FADS2	ENST00000278840	human	ensembl	74_37	+1	known	silent	c.723	p.L241	0.997	pfam_Fatty_acid_desaturase-1,pirsf_Fatty_acid/sphinglp_desaturase	pfam_Fatty_acid_desaturase-1,pfam_Cyt_B5-like_heme/steroid-bd,superfamily_Cyt_B5-like_heme/steroid-bd,pirsf_Fatty_acid/sphinglp_desaturase,pfscan_Cyt_B5-like_heme/steroid-bd	-	no_errors	FADS2	HGNC	ENSG00000134824	tier1	-	-	111	0	0.00	31	15	32.61
BAZ2A	0	genome.wustl.edu	37	12	57011222	57011222	+	Silent	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	12	57011222	57011222	G	A	SNP	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	silent	c.99	p.L33	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	tier1	-	-	71	0	0.00	21	14	40.00
KDM6B	0	genome.wustl.edu	37	17	7752697	7752697	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	17	7752697	7752697	C	T	SNP	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	missense	c.3091	p.R1031C	0.933	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510	tier1	-	-	59	0	0.00	41	34	45.33
LOC149134	0	genome.wustl.edu	37	1	246954133	246954133	+	RNA	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	246954133	246954133	C	T	SNP	LOC149134	ENST00000419361	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-439E19.3	Clone_based_vega_gene	ENSG00000227953	tier1	-	-	83	0	0.00	4	13	76.47
DCT	0	genome.wustl.edu	37	13	95121205	95121205	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	13	95121205	95121205	G	C	SNP	DCT	ENST00000446125	human	ensembl	74_37	-1	known	missense	c.390	p.I130M	1.000	superfamily_Unchr_di-copper_centre	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	DCT	HGNC	ENSG00000080166	tier1	-	-	63	0	0.00	46	17	26.98
SLC1A3	0	genome.wustl.edu	37	5	36680650	36680651	+	Frame_Shift_Ins	INS	-	-	AACAACTTTG			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	5	36680650	36680651	-	AACAACTTTG	INS	SLC1A3	ENST00000265113	human	ensembl	74_37	+1	known	frame_shift_ins	c.1248_1249	p.E420fs	0.746:1.000	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A3	HGNC	ENSG00000079215	tier1			NA	NA	NA	NA	NA	NA
DPF3	0	genome.wustl.edu	37	14	73190401	73190401	+	Silent	SNP	C	C	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	14	73190401	73190401	C	G	SNP	DPF3	ENST00000366353	human	ensembl	74_37	-1	known	silent	c.630	p.G210	0.989	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	DPF3	HGNC	ENSG00000205683	tier1	-	-	145	0	0.00	16	26	61.90
FKBP7	0	genome.wustl.edu	37	2	179330469	179330469	+	RNA	DEL	A	A	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	2	179330469	179330469	A	-	DEL	FKBP7	ENST00000464248	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FKBP7	HGNC	ENSG00000079150	tier1			19	0	0.00	22	6	21.43
ENSG00000265289	0	genome.wustl.edu	37	17	28386420	28386420	+	RNA	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	17	28386420	28386420	C	A	SNP	ENSG00000265289	ENST00000583250	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	AC104984.4	Clone_based_vega_gene	ENSG00000265289	tier1	-	-	19	0	0.00	2	6	75.00
PHKA1	0	genome.wustl.edu	37	X	71819704	71819704	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	X	71819704	71819704	G	T	SNP	PHKA1	ENST00000373539	human	ensembl	74_37	-1	known	missense	c.3085	p.H1029N	0.987	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	tier1	-	-	26	0	0.00	27	4	12.90
OBSCN	0	genome.wustl.edu	37	1	228463525	228463525	+	Silent	SNP	C	C	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	228463525	228463525	C	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.6018	p.T2006	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	54	0	0.00	6	14	70.00
COL14A1	0	genome.wustl.edu	37	8	121293244	121293244	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	8	121293244	121293244	A	G	SNP	COL14A1	ENST00000297848	human	ensembl	74_37	+1	known	missense	c.3770	p.N1257S	1.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	tier1	rs115441480	-	90	0	0.00	65	10	13.33
ENSG00000203279	0	genome.wustl.edu	37	9	100000739	100000739	+	RNA	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	100000739	100000739	C	A	SNP	ENSG00000203279	ENST00000366109	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-498P14.5	Clone_based_vega_gene	ENSG00000203279	tier1	-	-	63	0	0.00	25	21	45.65
GPER1	0	genome.wustl.edu	37	7	1132439	1132439	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	7	1132439	1132439	G	A	SNP	GPER1	ENST00000297469	human	ensembl	74_37	+1	known	missense	c.1075	p.V359I	0.009	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPER1	HGNC	ENSG00000164850	tier1	-	-	74	0	0.00	62	11	15.07
PTPRM	0	genome.wustl.edu	37	18	7888142	7888142	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	18	7888142	7888142	G	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.235	p.G79W	0.963	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	tier1	-	-	39	0	0.00	9	3	25.00
C3orf52	0	genome.wustl.edu	37	3	111849124	111849124	+	RNA	DEL	A	A	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	3	111849124	111849124	A	-	DEL	C3orf52	ENST00000467942	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	C3orf52	HGNC	ENSG00000114529	tier1			19	0	0.00	20	4	16.67
IGFN1	0	genome.wustl.edu	37	1	201175746	201175746	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	201175746	201175746	G	T	SNP	IGFN1	ENST00000335211	human	ensembl	74_37	+1	known	missense	c.1725	p.R575S	0.947	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGFN1	HGNC	ENSG00000163395	tier1	-	-	34	0	0.00	19	4	17.39
PNLDC1	0	genome.wustl.edu	37	6	160238167	160238167	+	Silent	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	6	160238167	160238167	C	T	SNP	PNLDC1	ENST00000610273	human	ensembl	74_37	+1	known	silent	c.1108	p.L370	0.886	superfamily_RNaseH-like_dom	pfam_RNase_CAF1,superfamily_RNaseH-like_dom	-	no_errors	PNLDC1	HGNC	ENSG00000146453	tier1	-	-	106	0	0.00	78	27	25.71
GPR31	0	genome.wustl.edu	37	6	167571125	167571125	+	Silent	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	6	167571125	167571125	C	T	SNP	GPR31	ENST00000366834	human	ensembl	74_37	-1	known	silent	c.195	p.A65	0.004	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR31	HGNC	ENSG00000120436	tier1	-	-	57	0	0.00	18	11	37.93
ENSG00000203279	0	genome.wustl.edu	37	9	100000738	100000738	+	RNA	SNP	T	T	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	100000738	100000738	T	A	SNP	ENSG00000203279	ENST00000366109	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	RP11-498P14.5	Clone_based_vega_gene	ENSG00000203279	tier1	-	-	62	0	0.00	25	21	45.65
LAMA1	0	genome.wustl.edu	37	18	7032079	7032079	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	18	7032079	7032079	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.2260	p.H754Y	0.025	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	tier1	-	-	51	0	0.00	8	3	27.27
CYP4F8	0	genome.wustl.edu	37	19	15730502	15730502	+	RNA	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	19	15730502	15730502	C	T	SNP	CYP4F8	ENST00000441682	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CYP4F8	HGNC	ENSG00000186526	tier1	rs61746468	-	176	1	0.56	123	13	9.56
ACAD10	0	genome.wustl.edu	37	12	112174704	112174704	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	12	112174704	112174704	T	A	SNP	ACAD10	ENST00000455480	human	ensembl	74_37	+1	known	missense	c.1703	p.L568H	0.000	superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_AcylCo_DH/oxidase_C,pfam_Acyl-CoA_DH_2_C,pfam_AcylCoA_DH/ox_N,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_HAD-like_dom,superfamily_AcylCoA_DH/oxidase_NM_dom,superfamily_Kinase-like_dom,superfamily_AcylCo_DH/oxidase_C,superfamily_HAD-like_dom,prints_HAD-SF_hydro_IA,tigrfam_HAD-SF_ppase_IA/epoxid_hydro_N,tigrfam_HAD-SF_hydro_IA	-	no_errors	ACAD10	HGNC	ENSG00000111271	tier1	-	-	52	0	0.00	15	23	60.53
RIMS2	0	genome.wustl.edu	37	8	104933942	104933942	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	8	104933942	104933942	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.2126	p.I709S	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	tier1	-	-	134	0	0.00	63	88	58.28
SERPINB10	0	genome.wustl.edu	37	18	61584739	61584739	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	18	61584739	61584739	A	-	DEL	SERPINB10	ENST00000238508	human	ensembl	74_37	+1	known	frame_shift_del	c.218	p.R76fs	0.998	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINB10	HGNC	ENSG00000242550	tier1			52	0	0.00	24	3	11.11
GLI1	0	genome.wustl.edu	37	12	57865299	57865299	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	12	57865299	57865299	C	T	SNP	GLI1	ENST00000228682	human	ensembl	74_37	+1	known	nonsense	c.2776	p.Q926*	0.967	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI1	HGNC	ENSG00000111087	tier1	-	-	23	0	0.00	4	9	69.23
BRD1	0	genome.wustl.edu	37	22	50181108	50181108	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	22	50181108	50181108	C	G	SNP	BRD1	ENST00000216267	human	ensembl	74_37	-1	known	missense	c.2394	p.R798S	1.000	NULL	pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP_dom,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,prints_Bromodomain,pfscan_PWWP_dom,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	BRD1	HGNC	ENSG00000100425	tier1	-	-	51	0	0.00	32	16	33.33
UBE2Q2P1	0	genome.wustl.edu	37	15	85081824	85081824	+	RNA	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	15	85081824	85081824	G	T	SNP	UBE2Q2P1	ENST00000339094	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	UBE2Q2P1	HGNC	ENSG00000189136	tier1	-	-	40	0	0.00	24	3	11.11
ZAR1L	0	genome.wustl.edu	37	13	32886050	32886050	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	13	32886050	32886050	C	T	SNP	ZAR1L	ENST00000345108	human	ensembl	74_37	-1	known	missense	c.13	p.V5I	0.130	NULL	NULL	-	no_errors	ZAR1L	HGNC	ENSG00000189167	tier1	-	-	85	0	0.00	7	17	70.83
MED12L	0	genome.wustl.edu	37	3	151075070	151075070	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	3	151075070	151075070	A	G	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.2626	p.T876A	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	tier1	-	-	142	0	0.00	34	60	63.83
AADAT	0	genome.wustl.edu	37	4	170983085	170983085	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	4	170983085	170983085	C	-	DEL	AADAT	ENST00000509167	human	ensembl	74_37	-1	known	frame_shift_del	c.1206	p.R403fs	0.993	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase	-	no_errors	AADAT	HGNC	ENSG00000109576	tier1			56	0	0.00	13	2	13.33
ACTN1	0	genome.wustl.edu	37	14	69350935	69350935	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	14	69350935	69350935	T	A	SNP	ACTN1	ENST00000394419	human	ensembl	74_37	-1	known	missense	c.1585	p.M529L	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN1	HGNC	ENSG00000072110	tier1	-	-	144	0	0.00	9	33	78.57
ITGB4	0	genome.wustl.edu	37	17	73753572	73753572	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	17	73753572	73753572	G	T	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	missense	c.5405	p.S1802I	0.998	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470	tier1	-	-	35	0	0.00	20	3	13.04
ANKRD40	0	genome.wustl.edu	37	17	48776876	48776876	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	17	48776876	48776876	G	A	SNP	ANKRD40	ENST00000285243	human	ensembl	74_37	-1	known	missense	c.662	p.S221F	1.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD40	HGNC	ENSG00000154945	tier1	-	-	135	0	0.00	42	22	34.38
PFKFB2	0	genome.wustl.edu	37	1	207228190	207228192	+	RNA	DEL	TTA	TTA	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	TTA	TTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	207228190	207228192	TTA	-	DEL	PFKFB2	ENST00000468857	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.682:0.629:0.168	-	-	-	no_errors	PFKFB2	HGNC	ENSG00000123836	tier1			42	0	0.00	4	6	60.00
ARHGEF12	0	genome.wustl.edu	37	11	120331407	120331407	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	120331407	120331407	G	T	SNP	ARHGEF12	ENST00000356641	human	ensembl	74_37	+1	known	missense	c.2497	p.V833F	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,superfamily_PDZ,smart_PDZ,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF12	HGNC	ENSG00000196914	tier1	-	-	35	0	0.00	16	3	15.79
FREM1	0	genome.wustl.edu	37	9	14842509	14842509	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	14842509	14842509	A	C	SNP	FREM1	ENST00000380881	human	ensembl	74_37	-1	known	missense	c.1546	p.L516V	1.000	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	tier1	-	-	56	0	0.00	13	4	23.53
SORCS3	0	genome.wustl.edu	37	10	106917026	106917026	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	10	106917026	106917026	C	T	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.1613	p.P538L	0.954	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	tier1	-	-	47	0	0.00	15	4	21.05
ENTPD8	0	genome.wustl.edu	37	9	140331717	140331717	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	140331717	140331717	C	T	SNP	ENTPD8	ENST00000371506	human	ensembl	74_37	-1	known	missense	c.289	p.E97K	0.945	pfam_GDA1_CD39_NTPase	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD8	HGNC	ENSG00000188833	tier1	-	-	23	0	0.00	14	3	17.65
LRRC49	0	genome.wustl.edu	37	15	71276481	71276483	+	In_Frame_Del	DEL	CAA	CAA	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	CAA	CAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	15	71276481	71276483	CAA	-	DEL	LRRC49	ENST00000260382	human	ensembl	74_37	+1	known	in_frame_del	c.1054_1056	p.Q354in_frame_del	1.000:1.000:0.997	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC49	HGNC	ENSG00000137821	tier1			46	0	0.00	25	3	10.71
KRTAP5-7	0	genome.wustl.edu	37	11	71238609	71238609	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	71238609	71238609	G	A	SNP	KRTAP5-7	ENST00000398536	human	ensembl	74_37	+1	known	missense	c.263	p.G88D	0.478	NULL	NULL	-	no_errors	KRTAP5-7	HGNC	ENSG00000244411	tier1	-	-	181	0	0.00	103	11	9.65
ATR	0	genome.wustl.edu	37	3	142279108	142279108	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	3	142279108	142279108	T	-	DEL	ATR	ENST00000350721	human	ensembl	74_37	-1	known	frame_shift_del	c.1538	p.N513fs	0.288	superfamily_ARM-type_fold	pfam_PI3/4_kinase_cat_dom,pfam_PIK-rel_kinase_FAT,pfam_UME,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_UME,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_HEAT_type_2,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATR	HGNC	ENSG00000175054	tier1			54	0	0.00	17	29	63.04
UBXN1	0	genome.wustl.edu	37	11	62445877	62445877	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	62445877	62445877	G	A	SNP	UBXN1	ENST00000294119	human	ensembl	74_37	-1	known	missense	c.224	p.S75F	0.018	NULL	pfam_UBX,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_UBX,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_UBX	-	no_errors	UBXN1	HGNC	ENSG00000162191	tier1	-	-	83	0	0.00	61	19	23.75
PIWIL1	0	genome.wustl.edu	37	12	130831088	130831088	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	12	130831088	130831088	G	T	SNP	PIWIL1	ENST00000245255	human	ensembl	74_37	+1	known	missense	c.490	p.D164Y	1.000	superfamily_PAZ_dom	pfam_Piwi,pfam_PAZ_dom,pfam_GAGE,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	PIWIL1	HGNC	ENSG00000125207	tier1	-	-	64	0	0.00	25	3	10.71
DDC	0	genome.wustl.edu	37	7	50607642	50607642	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	7	50607642	50607642	C	T	SNP	DDC	ENST00000357936	human	ensembl	74_37	-1	known	missense	c.286	p.G96R	0.998	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	pfam_PyrdxlP-dep_de-COase,pfam_ArAA_b-elim_lyase/Thr_aldolase,superfamily_PyrdxlP-dep_Trfase,prints_Aromatic_deC	-	no_errors	DDC	HGNC	ENSG00000132437	tier1	-	-	62	0	0.00	23	15	39.47
HCK	0	genome.wustl.edu	37	20	30659487	30659487	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	20	30659487	30659487	T	C	SNP	HCK	ENST00000375852	human	ensembl	74_37	+1	known	missense	c.85	p.F29L	0.992	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	HCK	HGNC	ENSG00000101336	tier1	-	-	118	0	0.00	65	25	27.78
CSTF2	0	genome.wustl.edu	37	X	100093229	100093229	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	X	100093229	100093229	C	A	SNP	CSTF2	ENST00000415585	human	ensembl	74_37	+1	known	missense	c.1673	p.A558D	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CSTF2	HGNC	ENSG00000101811	tier1	-	-	25	0	0.00	10	3	23.08
GINS4	0	genome.wustl.edu	37	8	41387793	41387793	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	8	41387793	41387793	A	-	DEL	GINS4	ENST00000276533	human	ensembl	74_37	+1	known	frame_shift_del	c.72	p.E25fs	1.000	pirsf_GINS_Sld5	pfam_GINS_complex,pirsf_GINS_Sld5	-	no_errors	GINS4	HGNC	ENSG00000147536	tier1			44	0	0.00	25	8	24.24
ENSG00000215953	0	genome.wustl.edu	37	5	84823943	84823944	+	RNA	DEL	CA	CA	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	5	84823943	84823944	CA	-	DEL	ENSG00000215953	ENST00000401134	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.030:0.032	-	-	-	no_errors	AC026700.1	Clone_based_ensembl_gene	ENSG00000215953	tier1			51	0	0.00	21	6	22.22
SATL1	0	genome.wustl.edu	37	X	84349150	84349150	+	Silent	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	X	84349150	84349150	G	A	SNP	SATL1	ENST00000509231	human	ensembl	74_37	-1	known	silent	c.1860	p.V620	0.990	superfamily_Acyl_CoA_acyltransferase	superfamily_Acyl_CoA_acyltransferase	-	no_errors	SATL1	HGNC	ENSG00000184788	tier1	-	-	57	0	0.00	165	18	9.78
PIK3R4	0	genome.wustl.edu	37	3	130454733	130454733	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	3	130454733	130454733	C	T	SNP	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	missense	c.847	p.D283N	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	tier1	-	-	59	0	0.00	45	17	27.42
ENSG00000256249	0	genome.wustl.edu	37	12	123200108	123200108	+	RNA	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	12	123200108	123200108	G	A	SNP	ENSG00000256249	ENST00000543611	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-324E6.6	Clone_based_vega_gene	ENSG00000256249	tier1	-	-	134	0	0.00	47	31	39.74
UNC80	0	genome.wustl.edu	37	2	210705324	210705324	+	Silent	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	2	210705324	210705324	G	A	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	silent	c.3315	p.L1105	0.994	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406	tier1	-	-	61	0	0.00	23	7	23.33
PRR9	0	genome.wustl.edu	37	1	153190623	153190623	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	153190623	153190623	G	C	SNP	PRR9	ENST00000368744	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	1.000	NULL	NULL	-	no_errors	PRR9	HGNC	ENSG00000203783	tier1	-	-	68	0	0.00	137	19	12.10
WRN	0	genome.wustl.edu	37	8	30924631	30924631	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	8	30924631	30924631	G	T	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	missense	c.587	p.R196L	1.000	pfam_3'-5'_exonuclease_dom,superfamily_RNaseH-like_dom,smart_3'-5'_exonuclease_dom	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	tier1	-	-	75	0	0.00	45	18	28.12
FMNL2	0	genome.wustl.edu	37	2	153482063	153482063	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	2	153482063	153482063	A	G	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1949	p.E650G	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	53	0	0.00	13	25	65.79
HSDL2	0	genome.wustl.edu	37	9	115171212	115171212	+	Silent	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	115171212	115171212	C	T	SNP	HSDL2	ENST00000398805	human	ensembl	74_37	+1	novel	silent	c.306	p.A102	1.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH	pfam_SCP2_sterol-bd_dom,pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,superfamily_SCP2_sterol-bd_dom,prints_Glc/ribitol_DH	-	no_errors	HSDL2	HGNC	ENSG00000119471	tier1	-	-	57	0	0.00	38	19	33.33
DNM1	0	genome.wustl.edu	37	9	131008703	131008703	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	131008703	131008703	G	T	SNP	DNM1	ENST00000372923	human	ensembl	74_37	+1	known	missense	c.1702	p.D568Y	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin_SF	-	no_errors	DNM1	HGNC	ENSG00000106976	tier1	-	-	96	0	0.00	44	4	8.33
IRGC	0	genome.wustl.edu	37	19	44223832	44223832	+	Silent	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	19	44223832	44223832	C	T	SNP	IRGC	ENST00000244314	human	ensembl	74_37	+1	known	silent	c.1122	p.G374	0.000	NULL	pfam_Interferon-induced_GTPase,superfamily_P-loop_NTPase	-	no_errors	IRGC	HGNC	ENSG00000124449	tier1	-	-	133	0	0.00	87	36	29.03
LRRC9	0	genome.wustl.edu	37	14	60524696	60524696	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	14	60524696	60524696	G	T	SNP	LRRC9	ENST00000445360	human	ensembl	74_37	+1	novel	missense	c.4232	p.S1411I	0.779	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC9	HGNC	ENSG00000131951	tier1	-	-	68	0	0.00	19	3	13.64
ARHGAP24	0	genome.wustl.edu	37	4	86643057	86643057	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	4	86643057	86643057	G	A	SNP	ARHGAP24	ENST00000395184	human	ensembl	74_37	+1	known	missense	c.200	p.G67E	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP24	HGNC	ENSG00000138639	tier1	rs144785317	-	121	0	0.00	56	5	8.20
NLRP11	0	genome.wustl.edu	37	19	56329269	56329269	+	Splice_Site	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	19	56329269	56329269	C	T	SNP	NLRP11	ENST00000443188	human	ensembl	74_37	-1	known	splice_site	c.271+1	e1+1	0.359	-	-	-	no_errors	NLRP11	HGNC	ENSG00000179873	tier1	-	-	34	0	0.00	13	6	31.58
OAZ2	0	genome.wustl.edu	37	15	64995295	64995295	+	RNA	SNP	T	T	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	15	64995295	64995295	T	C	SNP	OAZ2	ENST00000559665	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	OAZ2	HGNC	ENSG00000180304	tier1	-	-	100	0	0.00	19	22	53.66
ADAM21P1	0	genome.wustl.edu	37	14	70713565	70713565	+	RNA	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	14	70713565	70713565	G	T	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.035	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	tier1	-	-	105	1	0.94	7	29	80.56
LINC00052	0	genome.wustl.edu	37	15	88121520	88121521	+	RNA	DEL	TC	TC	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	15	88121520	88121521	TC	-	DEL	LINC00052	ENST00000560153	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018:0.021	-	-	-	no_errors	LINC00052	HGNC	ENSG00000259527	tier1			85	0	0.00	37	4	9.76
UNC45B	0	genome.wustl.edu	37	17	33491118	33491118	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	17	33491118	33491118	C	A	SNP	UNC45B	ENST00000268876	human	ensembl	74_37	+1	known	missense	c.1084	p.L362I	1.000	pfam_UNC-45/Ring3	pfam_UNC-45/Ring3,superfamily_ARM-type_fold,smart_TPR_repeat,smart_Armadillo,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	UNC45B	HGNC	ENSG00000141161	tier1	-	-	51	0	0.00	27	14	34.15
C15orf61	0	genome.wustl.edu	37	15	67813895	67813895	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	15	67813895	67813895	G	C	SNP	C15orf61	ENST00000342683	human	ensembl	74_37	+1	known	missense	c.309	p.Q103H	0.997	NULL	NULL	-	no_errors	C15orf61	HGNC	ENSG00000189227	tier1	-	-	63	0	0.00	32	9	20.93
ATM	0	genome.wustl.edu	37	11	108192088	108192088	+	Silent	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	11	108192088	108192088	C	T	SNP	ATM	ENST00000278616	human	ensembl	74_37	+1	known	silent	c.6513	p.P2171	0.001	pfam_PIK-rel_kinase_FAT,superfamily_ARM-type_fold,pfscan_PIK_FAT	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	tier1	-	-	79	0	0.00	39	4	9.30
GARNL3	0	genome.wustl.edu	37	9	130005414	130005414	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	130005414	130005414	G	A	SNP	GARNL3	ENST00000429629	human	ensembl	74_37	+1	known	missense	c.29	p.G10E	1.000	NULL	NULL	-	no_errors	GARNL3	HGNC	ENSG00000136895	tier1	-	-	64	0	0.00	33	5	13.16
TMEM78	0	genome.wustl.edu	37	1	229385670	229385671	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	229385670	229385671	TC	-	DEL	TMEM78	ENST00000323223	human	ensembl	74_37	+1	known	frame_shift_del	c.229_230	p.F79fs	0.029:0.021	NULL	NULL	-	no_errors	TMEM78	HGNC	ENSG00000177800	tier1			15	0	0.00	7	3	30.00
EPHA8	0	genome.wustl.edu	37	1	22925406	22925406	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	22925406	22925406	T	C	SNP	EPHA8	ENST00000166244	human	ensembl	74_37	+1	known	missense	c.2254	p.S752P	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA8	HGNC	ENSG00000070886	tier1	-	-	77	0	0.00	30	18	37.50
MARK1	0	genome.wustl.edu	37	1	220825491	220825491	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	220825491	220825491	G	A	SNP	MARK1	ENST00000366917	human	ensembl	74_37	+1	known	missense	c.1735	p.G579S	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KA1_dom,superfamily_Kinase-like_dom,superfamily_KA1/Ssp2_C,superfamily_UBA-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_UBA/transl_elong_EF1B_N_euk,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom	-	no_errors	MARK1	HGNC	ENSG00000116141	tier1	-	-	63	0	0.00	32	8	20.00
ARSD	0	genome.wustl.edu	37	X	2825157	2825158	+	RNA	INS	-	-	AAAA			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	X	2825157	2825158	-	AAAA	INS	ARSD	ENST00000495294	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.277:0.277	-	-	-	no_errors	ARSD	HGNC	ENSG00000006756	tier1			10	0	0.00	12	2	14.29
DHRS13	0	genome.wustl.edu	37	17	27225817	27225817	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	17	27225817	27225817	C	G	SNP	DHRS13	ENST00000378895	human	ensembl	74_37	-1	known	missense	c.776	p.R259T	0.001	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH	-	no_errors	DHRS13	HGNC	ENSG00000167536	tier1	-	-	72	0	0.00	41	20	32.79
CA3	0	genome.wustl.edu	37	8	86351943	86351943	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	8	86351943	86351943	C	A	SNP	CA3	ENST00000285381	human	ensembl	74_37	+1	known	missense	c.37	p.P13T	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA3	HGNC	ENSG00000164879	tier1	-	-	43	0	0.00	39	13	25.00
NEURL4	0	genome.wustl.edu	37	17	7230036	7230036	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	17	7230036	7230036	C	T	SNP	NEURL4	ENST00000399464	human	ensembl	74_37	-1	known	missense	c.1086	p.M362I	1.000	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl_sf,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	tier1	-	-	29	0	0.00	50	9	15.25
ENSG00000222732	0	genome.wustl.edu	37	5	171706280	171706280	+	RNA	SNP	G	G	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	5	171706280	171706280	G	C	SNP	ENSG00000222732	ENST00000410800	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC008671.1	Clone_based_ensembl_gene	ENSG00000222732	tier1	-	-	57	0	0.00	25	17	39.53
SMG7	0	genome.wustl.edu	37	1	183520047	183520047	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	183520047	183520047	G	C	SNP	SMG7	ENST00000507469	human	ensembl	74_37	+1	known	missense	c.3157	p.D1053H	1.000	NULL	pfam_EST1	-	no_errors	SMG7	HGNC	ENSG00000116698	tier1	-	-	56	0	0.00	95	9	8.65
RFX6	0	genome.wustl.edu	37	6	117249984	117249984	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	6	117249984	117249984	C	A	SNP	RFX6	ENST00000332958	human	ensembl	74_37	+1	known	missense	c.2461	p.H821N	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX6	HGNC	ENSG00000185002	tier1	-	-	94	0	0.00	2	20	90.91
RECK	0	genome.wustl.edu	37	9	36108140	36108140	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	36108140	36108140	A	G	SNP	RECK	ENST00000377966	human	ensembl	74_37	+1	known	missense	c.1744	p.I582V	1.000	NULL	pfam_Kazal_dom,superfamily_Prot_inh_PMP,smart_Kazal_dom	-	no_errors	RECK	HGNC	ENSG00000122707	tier1	rs199710956	-	105	0	0.00	48	5	9.43
CHRNB4	0	genome.wustl.edu	37	15	78921713	78921713	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	15	78921713	78921713	T	A	SNP	CHRNB4	ENST00000261751	human	ensembl	74_37	-1	known	missense	c.934	p.T312S	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNB4	HGNC	ENSG00000117971	tier1	-	-	83	0	0.00	33	17	34.00
ENSG00000216004	0	genome.wustl.edu	37	10	72975564	72975571	+	RNA	DEL	GTGTGTGT	GTGTGTGT	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	GTGTGTGT	GTGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	10	72975564	72975571	GTGTGTGT	-	DEL	ENSG00000216004	ENST00000401185	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.024:0.453:0.476:0.522:0.594:0.095:0.090:0.011	-	-	-	no_errors	AL359832.1	Clone_based_ensembl_gene	ENSG00000216004	tier1			NA	NA	NA	NA	NA	NA
CHSY3	0	genome.wustl.edu	37	5	129521365	129521365	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	5	129521365	129521365	C	T	SNP	CHSY3	ENST00000305031	human	ensembl	74_37	+1	known	missense	c.2530	p.P844S	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHSY3	HGNC	ENSG00000198108	tier1	-	-	44	0	0.00	12	8	40.00
DFNB31	0	genome.wustl.edu	37	9	117240969	117240969	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	9	117240969	117240969	T	A	SNP	DFNB31	ENST00000362057	human	ensembl	74_37	-1	known	missense	c.701	p.Y234F	1.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	DFNB31	HGNC	ENSG00000095397	tier1	-	-	96	0	0.00	55	29	34.52
PCDHGA8	0	genome.wustl.edu	37	5	140773965	140773965	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	5	140773965	140773965	C	A	SNP	PCDHGA8	ENST00000398604	human	ensembl	74_37	+1	known	missense	c.1585	p.Q529K	0.051	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA8	HGNC	ENSG00000253767	tier1	-	-	86	0	0.00	18	15	45.45
MIR205HG	0	genome.wustl.edu	37	1	209605637	209605648	+	RNA	DEL	AGCAGCAGCAGC	AGCAGCAGCAGC	-			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	AGCAGCAGCAGC	AGCAGCAGCAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	209605637	209605648	AGCAGCAGCAGC	-	DEL	MIR205HG	ENST00000366437	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	MIR205HG	HGNC	ENSG00000230937	tier1			NA	NA	NA	NA	NA	NA
MNDA	0	genome.wustl.edu	37	1	158813136	158813136	+	Silent	SNP	T	T	G			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	1	158813136	158813136	T	G	SNP	MNDA	ENST00000368141	human	ensembl	74_37	+1	known	silent	c.333	p.L111	0.001	NULL	pfam_HIN200/IF120x,pfam_DAPIN,pfscan_DAPIN,pfscan_HIN200/IF120x	-	no_errors	MNDA	HGNC	ENSG00000163563	tier1	-	-	31	0	0.00	54	9	14.29
NPHS1	0	genome.wustl.edu	37	19	36330257	36330257	+	Silent	SNP	G	G	T			TCGA-DX-A1KY-01A-11D-A24N-09	TCGA-DX-A1KY-10A-01D-A24N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	65d03611-7930-43a7-a751-a6a0e2854593	89c21466-106d-42dd-bdff-dce05eb7cb32	19	36330257	36330257	G	T	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	silent	c.2991	p.T997	0.963	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270	tier1	-	-	68	0	0.00	42	8	16.00
