Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ETV3	0	genome.wustl.edu	37	1	157105270	157105270	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	1	157105270	157105270	C	T	SNP	ETV3	ENST00000368192	human	ensembl	74_37	-1	known	missense	c.277	p.A93T	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV3	HGNC	ENSG00000117036	tier1	-	-	62	0	0.00	104	11	9.57
ADAM21P1	0	genome.wustl.edu	37	14	70713951	70713951	+	RNA	SNP	G	G	A			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	14	70713951	70713951	G	A	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.732	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	tier1	rs202183568	-	28	0	0.00	50	7	12.28
MT-RNR2	0	genome.wustl.edu	37	MT	2226	2226	+	RNA	SNP	T	T	C			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	MT	2226	2226	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	49	0	0.00	75	8	9.64
TTC23	0	genome.wustl.edu	37	15	99759242	99759242	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	15	99759242	99759242	G	T	SNP	TTC23	ENST00000262074	human	ensembl	74_37	-1	known	missense	c.316	p.Q106K	0.998	smart_TPR_repeat	smart_TPR_repeat	-	no_errors	TTC23	HGNC	ENSG00000103852	tier1	-	-	18	0	0.00	46	15	24.59
MIR548I2	0	genome.wustl.edu	37	4	9557816	9557821	+	RNA	DEL	AGAAGG	AGAAGG	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	AGAAGG	AGAAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	4	9557816	9557821	AGAAGG	-	DEL	MIR548I2	ENST00000408348	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009:0.010:0.011:0.017:0.022:0.026	-	-	-	no_errors	MIR548I2	HGNC	ENSG00000221275	tier1			NA	NA	NA	NA	NA	NA
ALOX12B	0	genome.wustl.edu	37	17	7989357	7989357	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	17	7989357	7989357	G	A	SNP	ALOX12B	ENST00000319144	human	ensembl	74_37	-1	known	missense	c.329	p.T110I	0.921	pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C,prints_LipOase_mml	-	no_errors	ALOX12B	HGNC	ENSG00000179477	tier1	-	-	26	0	0.00	52	5	8.77
ADTRP	0	genome.wustl.edu	37	6	11714728	11714728	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	6	11714728	11714728	G	A	SNP	ADTRP	ENST00000229583	human	ensembl	74_37	-1	known	missense	c.730	p.R244W	0.000	NULL	pfam_Far-17a_AIG1	-	no_errors	ADTRP	HGNC	ENSG00000111863	tier1	-	-	77	0	0.00	111	13	10.48
ENSG00000203849	0	genome.wustl.edu	37	1	142620676	142620678	+	RNA	DEL	ATA	ATA	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	ATA	ATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	1	142620676	142620678	ATA	-	DEL	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.222:0.217:0.212	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849	tier1			19	0	0.00	18	3	14.29
NAGPA	0	genome.wustl.edu	37	16	5077858	5077858	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	16	5077858	5077858	T	C	SNP	NAGPA	ENST00000312251	human	ensembl	74_37	-1	known	missense	c.1163	p.N388S	0.999	pfscan_EG-like_dom	pfam_DUF2233,pfscan_EG-like_dom	-	no_errors	NAGPA	HGNC	ENSG00000103174	tier1	-	-	113	0	0.00	133	12	8.28
CDC7	0	genome.wustl.edu	37	1	91977217	91977217	+	Silent	SNP	T	T	A			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	1	91977217	91977217	T	A	SNP	CDC7	ENST00000234626	human	ensembl	74_37	+1	known	silent	c.399	p.A133	0.984	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDC7	HGNC	ENSG00000097046	tier1	-	-	43	0	0.00	91	10	9.90
KRTAP4-1	0	genome.wustl.edu	37	17	39340970	39340970	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	17	39340970	39340970	C	T	SNP	KRTAP4-1	ENST00000398472	human	ensembl	74_37	-1	known	missense	c.137	p.R46H	0.712	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-1	HGNC	ENSG00000198443	tier1	-	-	114	0	0.00	181	22	10.84
TRAF7	0	genome.wustl.edu	37	16	2225556	2225556	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	16	2225556	2225556	A	G	SNP	TRAF7	ENST00000326181	human	ensembl	74_37	+1	known	missense	c.1559	p.N520S	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_TRAF-like,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_RING,pfscan_Znf_TRAF,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TRAF7	HGNC	ENSG00000131653	tier1	-	-	13	0	0.00	17	6	26.09
SRPX	0	genome.wustl.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	X	38079976	38079978	GCA	-	DEL	SRPX	ENST00000378533	human	ensembl	74_37	-1	known	in_frame_del	c.70_68	p.L23in_frame_del	0.000:0.001:0.002	NULL	pfam_Hyalin,pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Hyalin,pfscan_Sushi_SCR_CCP	-	no_errors	SRPX	HGNC	ENSG00000101955	tier1			10	0	0.00	20	2	9.09
TRPM1	0	genome.wustl.edu	37	15	31294794	31294797	+	Frame_Shift_Del	DEL	TTCT	TTCT	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	TTCT	TTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	15	31294794	31294797	TTCT	-	DEL	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	frame_shift_del	c.4160_4157	p.K1386fs	0.000:0.000:0.002:0.002	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	tier1			34	0	0.00	36	6	14.29
SLC22A18	0	genome.wustl.edu	37	11	2938206	2938206	+	RNA	SNP	A	A	G			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	11	2938206	2938206	A	G	SNP	SLC22A18	ENST00000449603	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	SLC22A18	HGNC	ENSG00000110628	tier1	-	-	40	0	0.00	83	11	11.70
STAB2	0	genome.wustl.edu	37	12	104092880	104092880	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	12	104092880	104092880	G	A	SNP	STAB2	ENST00000388887	human	ensembl	74_37	+1	known	missense	c.3589	p.D1197N	0.018	pfam_FAS1_domain,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_FAS1_domain,pfscan_FAS1_domain	pfam_FAS1_domain,pfam_Link,superfamily_C-type_lectin_fold,superfamily_FAS1_domain,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_FAS1_domain,smart_Link,pfscan_EG-like_dom,pfscan_FAS1_domain,pfscan_Link	-	no_errors	STAB2	HGNC	ENSG00000136011	tier1	-	-	36	0	0.00	77	326	80.89
ENSG00000259596	0	genome.wustl.edu	37	15	22752707	22752715	+	RNA	DEL	CTCTCCTCC	CTCTCCTCC	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	CTCTCCTCC	CTCTCCTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	15	22752707	22752715	CTCTCCTCC	-	DEL	ENSG00000259596	ENST00000560026	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.054:0.077:0.097:0.114:0.128:0.140:0.150:0.157:0.163	-	-	-	no_errors	RP11-566K19.3	Clone_based_vega_gene	ENSG00000259596	tier1			NA	NA	NA	NA	NA	NA
PDLIM3	0	genome.wustl.edu	37	4	186427772	186427772	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	4	186427772	186427772	C	T	SNP	PDLIM3	ENST00000284770	human	ensembl	74_37	-1	known	missense	c.697	p.V233M	1.000	NULL	pfam_PDZ,pfam_Znf_LIM,superfamily_PDZ,smart_PDZ,smart_ZASP,smart_Znf_LIM,pfscan_Znf_LIM,pfscan_PDZ	-	no_errors	PDLIM3	HGNC	ENSG00000154553	tier1	-	-	38	0	0.00	85	17	16.67
KLHL18	0	genome.wustl.edu	37	3	47385390	47385390	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	3	47385390	47385390	G	A	SNP	KLHL18	ENST00000232766	human	ensembl	74_37	+1	known	missense	c.1684	p.G562R	1.000	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL18	HGNC	ENSG00000114648	tier1	-	-	12	0	0.00	37	7	15.91
NPVF	0	genome.wustl.edu	37	7	25266594	25266594	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	7	25266594	25266594	C	A	SNP	NPVF	ENST00000222674	human	ensembl	74_37	-1	known	missense	c.190	p.D64Y	1.000	NULL	NULL	-	no_errors	NPVF	HGNC	ENSG00000105954	tier1	-	-	47	0	0.00	75	11	12.79
ULK4P2	0	genome.wustl.edu	37	15	30888946	30888946	+	RNA	SNP	T	T	A			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	15	30888946	30888946	T	A	SNP	ULK4P2	ENST00000566793	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.164	-	-	-	no_errors	ULK4P2	HGNC	ENSG00000260128	tier1	rs201386313	-	28	0	0.00	53	7	11.67
ENSG00000266651	0	genome.wustl.edu	37	17	16344167	16344167	+	RNA	DEL	A	A	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	17	16344167	16344167	A	-	DEL	ENSG00000266651	ENST00000585048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-138I1.3	Clone_based_vega_gene	ENSG00000266651	tier1			9	0	0.00	10	3	23.08
MON2	0	genome.wustl.edu	37	12	62949949	62949949	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	12	62949949	62949949	G	A	SNP	MON2	ENST00000393630	human	ensembl	74_37	+1	known	missense	c.3389	p.R1130K	1.000	superfamily_ARM-type_fold	pfam_DUF1981_Sec7_assoc,superfamily_ARM-type_fold	-	no_errors	MON2	HGNC	ENSG00000061987	tier1	-	-	14	0	0.00	34	68	66.67
ZDHHC11B	0	genome.wustl.edu	37	5	741736	741736	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	5	741736	741736	G	T	SNP	ZDHHC11B	ENST00000382776	human	ensembl	74_37	-1	known	missense	c.908	p.A303D	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11B	HGNC	ENSG00000206077	tier1	rs61128505	-	25	0	0.00	32	7	17.95
PCOLCE2	0	genome.wustl.edu	37	3	142607822	142607823	+	RNA	INS	-	-	GCTCACACTGGCAGCAGCGCTG			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	3	142607822	142607823	-	GCTCACACTGGCAGCAGCGCTG	INS	PCOLCE2	ENST00000461818	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PCOLCE2	HGNC	ENSG00000163710	tier1			NA	NA	NA	NA	NA	NA
PLEKHG2	0	genome.wustl.edu	37	19	39911414	39911414	+	Silent	SNP	C	C	T			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	19	39911414	39911414	C	T	SNP	PLEKHG2	ENST00000409794	human	ensembl	74_37	+1	known	silent	c.1321	p.L441	0.984	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG2	HGNC	ENSG00000090924	tier1	-	-	33	0	0.00	36	5	12.20
HEG1	0	genome.wustl.edu	37	3	124732419	124732419	+	Silent	SNP	A	A	G			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	3	124732419	124732419	A	G	SNP	HEG1	ENST00000311127	human	ensembl	74_37	-1	known	silent	c.2004	p.S668	0.028	NULL	pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HEG1	HGNC	ENSG00000173706	tier1	rs202026679	-	16	0	0.00	36	8	18.18
ADAM21	0	genome.wustl.edu	37	14	70924450	70924450	+	Silent	SNP	C	C	T			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	14	70924450	70924450	C	T	SNP	ADAM21	ENST00000267499	human	ensembl	74_37	+1	known	silent	c.234	p.V78	0.170	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM21	HGNC	ENSG00000139985	tier1	rs58247196	-	24	0	0.00	40	14	25.93
MYO7A	0	genome.wustl.edu	37	11	76895771	76895792	+	Frame_Shift_Del	DEL	GGAGGCGGGGACACCAGGGCCT	GGAGGCGGGGACACCAGGGCCT	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	GGAGGCGGGGACACCAGGGCCT	GGAGGCGGGGACACCAGGGCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	11	76895771	76895792	GGAGGCGGGGACACCAGGGCCT	-	DEL	MYO7A	ENST00000409893	human	ensembl	74_37	+1	putative	frame_shift_del	c.3514_3535	p.G1172fs	0.000:0.000:0.001:0.001:0.004:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.011:0.011:0.009:0.051:0.048:0.007	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	tier1			NA	NA	NA	NA	NA	NA
CACNA1G	0	genome.wustl.edu	37	17	48646553	48646553	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	17	48646553	48646553	T	C	SNP	CACNA1G	ENST00000359106	human	ensembl	74_37	+1	known	missense	c.382	p.F128L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	tier1	-	-	103	0	0.00	155	16	9.36
LINC00200	0	genome.wustl.edu	37	10	1206620	1206676	+	RNA	DEL	CTGCTGGCTGGCACGTTCGCACGTGGCCATGTCAGCTCCAAGGAGGATGCTGACATC	CTGCTGGCTGGCACGTTCGCACGTGGCCATGTCAGCTCCAAGGAGGATGCTGACATC	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	CTGCTGGCTGGCACGTTCGCACGTGGCCATGTCAGCTCCAAGGAGGATGCTGACATC	CTGCTGGCTGGCACGTTCGCACGTGGCCATGTCAGCTCCAAGGAGGATGCTGACATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	10	1206620	1206676	CTGCTGGCTGGCACGTTCGCACGTGGCCATGTCAGCTCCAAGGAGGATGCTGACATC	-	DEL	LINC00200	ENST00000583117	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.004:0.007:0.006:0.006:0.005:0.003:0.002:0.003:0.003:0.003:0.003:0.004:0.004:0.003:0.004:0.004:0.003:0.003:0.006:0.007:0.007:0.006:0.007:0.007:0.006:0.004:0.003:0.001:0.001:0.001:0.002:0.005:0.007:0.007:0.005:0.003:0.002:0.005:0.006:0.007:0.006:0.004:0.001:0.000:0.000:0.000:0.001:0.001:0.003:0.003:0.005:0.008:0.010:0.010:0.008:0.005	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	tier1			NA	NA	NA	NA	NA	NA
LOC728554	0	genome.wustl.edu	37	5	177303235	177303259	+	RNA	DEL	TGGTGGTGGTACGTTGGTGGTACGT	TGGTGGTGGTACGTTGGTGGTACGT	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	TGGTGGTGGTACGTTGGTGGTACGT	TGGTGGTGGTACGTTGGTGGTACGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	5	177303235	177303259	TGGTGGTGGTACGTTGGTGGTACGT	-	DEL	LOC728554	ENST00000507037	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014:0.010:0.008:0.007:0.002:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.000:0.001:0.001:0.002:0.001:0.001:0.001:0.001:0.004:0.002	-	-	-	no_errors	RP11-423H2.1	Clone_based_vega_gene	ENSG00000170089	tier1			NA	NA	NA	NA	NA	NA
ALG13	0	genome.wustl.edu	37	X	111000722	111000722	+	RNA	DEL	T	T	-			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	X	111000722	111000722	T	-	DEL	ALG13	ENST00000487243	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.002	-	-	-	no_errors	ALG13	HGNC	ENSG00000101901	tier1			14	0	0.00	40	4	9.09
HLA-F	0	genome.wustl.edu	37	6	29692901	29692901	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A1L4-01A-12D-A26G-09	TCGA-DX-A1L4-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	6c1aa1b8-f02c-43e7-a410-cc0344f0107e	6c11585a-6ac8-4f59-90c4-cae54eb89e0e	6	29692901	29692901	C	T	SNP	HLA-F	ENST00000259951	human	ensembl	74_37	+1	known	missense	c.704	p.T235M	0.675	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like_dom	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom,prints_MHC_I_a	-	no_errors	HLA-F	HGNC	ENSG00000204642	tier1	-	-	90	0	0.00	144	26	15.20
