Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RTN3	0	genome.wustl.edu	37	11	63525788	63525788	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	11	63525788	63525788	T	-	DEL	RTN3	ENST00000354497	human	ensembl	74_37	+1	putative	frame_shift_del	c.570	p.L193fs	0.998	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318	tier1			28	0	0.00	23	2	8.00
GPRIN1	0	genome.wustl.edu	37	5	176026136	176026146	+	Frame_Shift_Del	DEL	CCTCCTTCCTC	CCTCCTTCCTC	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	CCTCCTTCCTC	CCTCCTTCCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	5	176026136	176026146	CCTCCTTCCTC	-	DEL	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	frame_shift_del	c.700_690	p.R231fs	0.001:0.001:0.018:0.050:0.065:0.536:0.053:0.031:0.027:0.000:0.000	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	tier1			NA	NA	NA	NA	NA	NA
GYPB	0	genome.wustl.edu	37	4	144917363	144917363	+	RNA	SNP	G	G	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	4	144917363	144917363	G	T	SNP	GYPB	ENST00000507009	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	GYPB	HGNC	ENSG00000250361	tier1	-	-	18	0	0.00	21	7	25.00
BAZ2B	0	genome.wustl.edu	37	2	160317645	160317645	+	RNA	DEL	T	T	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	2	160317645	160317645	T	-	DEL	BAZ2B	ENST00000483316	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.155	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636	tier1			12	0	0.00	11	4	26.67
EML5	0	genome.wustl.edu	37	14	89168805	89168805	+	Silent	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	14	89168805	89168805	G	A	SNP	EML5	ENST00000554922	human	ensembl	74_37	-1	known	silent	c.2223	p.Y741	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML5	HGNC	ENSG00000165521	tier1	-	-	34	0	0.00	15	17	53.12
C1orf131	0	genome.wustl.edu	37	1	231376805	231376805	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	231376805	231376805	A	C	SNP	C1orf131	ENST00000366649	human	ensembl	74_37	-1	known	missense	c.83	p.L28R	0.003	NULL	NULL	-	no_errors	C1orf131	HGNC	ENSG00000143633	tier1	-	-	37	0	0.00	32	12	27.27
GEN1	0	genome.wustl.edu	37	2	17962994	17962998	+	Frame_Shift_Del	DEL	AAGTT	AAGTT	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	AAGTT	AAGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	2	17962994	17962998	AAGTT	-	DEL	GEN1	ENST00000317402	human	ensembl	74_37	+1	known	frame_shift_del	c.2515_2519	p.K839fs	0.019:0.011:0.000:0.000:0.000	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	GEN1	HGNC	ENSG00000178295	tier1			NA	NA	NA	NA	NA	NA
ENSG00000205215	0	genome.wustl.edu	37	17	20424277	20424277	+	RNA	SNP	G	G	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	17	20424277	20424277	G	T	SNP	ENSG00000205215	ENST00000582261	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.706	-	-	-	no_errors	AC015818.3	Clone_based_vega_gene	ENSG00000205215	tier1	-	-	73	0	0.00	55	20	26.67
PAGE5	0	genome.wustl.edu	37	X	55248262	55248262	+	Silent	SNP	T	T	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	X	55248262	55248262	T	A	SNP	PAGE5	ENST00000289619	human	ensembl	74_37	+1	known	silent	c.204	p.I68	0.004	pfam_GAGE	pfam_GAGE	-	no_errors	PAGE5	HGNC	ENSG00000158639	tier1	-	-	27	0	0.00	17	24	58.54
CDO1	0	genome.wustl.edu	37	5	115151960	115151960	+	Silent	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	5	115151960	115151960	G	A	SNP	CDO1	ENST00000250535	human	ensembl	74_37	-1	known	silent	c.135	p.T45	0.998	pfam_Cys_dOase_I,superfamily_RmlC_Cupin	pfam_Cys_dOase_I,pfam_Cysteamine_dioxygenase,superfamily_RmlC_Cupin	-	no_errors	CDO1	HGNC	ENSG00000129596	tier1	rs199673192	-	29	0	0.00	18	11	37.93
RPL29P2	0	genome.wustl.edu	37	17	7658285	7658285	+	RNA	DEL	A	A	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	17	7658285	7658285	A	-	DEL	RPL29P2	ENST00000498671	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	RPL29P2	HGNC	ENSG00000240480	tier1			9	0	0.00	21	3	12.50
EXO1	0	genome.wustl.edu	37	1	242030309	242030309	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	242030309	242030309	G	-	DEL	EXO1	ENST00000348581	human	ensembl	74_37	+1	known	frame_shift_del	c.1219	p.L408fs	0.896	NULL	pfam_XPG-I_dom,pfam_XPG_DNA_repair_N,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2	-	no_errors	EXO1	HGNC	ENSG00000174371	tier1			28	0	0.00	19	5	20.83
ANTXRLP1	0	genome.wustl.edu	37	10	47640774	47640792	+	RNA	DEL	AAGCTGAGTGTTGGGAGAG	AAGCTGAGTGTTGGGAGAG	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	AAGCTGAGTGTTGGGAGAG	AAGCTGAGTGTTGGGAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	10	47640774	47640792	AAGCTGAGTGTTGGGAGAG	-	DEL	ANTXRLP1	ENST00000454837	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.069:0.070:0.070:0.070:0.068:0.065:0.062:0.057:0.052:0.046:0.038:0.038:0.038:0.036:0.034:0.031:0.027:0.022:0.016	-	-	-	no_errors	ANTXRLP1	HGNC	ENSG00000243536	tier1			NA	NA	NA	NA	NA	NA
ENSG00000269688	0	genome.wustl.edu	37	19	39335855	39335856	+	RNA	INS	-	-	CCTGGCCAACAACCTGAAACCAC			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	19	39335855	39335856	-	CCTGGCCAACAACCTGAAACCAC	INS	ENSG00000269688	ENST00000600473	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.002	-	-	-	no_errors	AC008982.2	Clone_based_vega_gene	ENSG00000269688	tier1			NA	NA	NA	NA	NA	NA
ENSG00000272485	0	genome.wustl.edu	37	6	775405	775445	+	RNA	DEL	CCGTGCCCACATTCCTGCAGTGCGTCTGAGGTTTTGGATCC	CCGTGCCCACATTCCTGCAGTGCGTCTGAGGTTTTGGATCC	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	CCGTGCCCACATTCCTGCAGTGCGTCTGAGGTTTTGGATCC	CCGTGCCCACATTCCTGCAGTGCGTCTGAGGTTTTGGATCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	6	775405	775445	CCGTGCCCACATTCCTGCAGTGCGTCTGAGGTTTTGGATCC	-	DEL	ENSG00000272485	ENST00000606622	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012:0.012:0.016:0.020:0.024:0.027:0.030:0.032:0.034:0.035:0.037:0.037:0.038:0.038:0.037:0.037:0.035:0.034:0.031:0.028:0.025:0.021:0.017:0.012:0.011:0.011:0.009:0.007:0.005:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	RP11-284J1.1	Clone_based_vega_gene	ENSG00000272485	tier1			NA	NA	NA	NA	NA	NA
ABCB7	0	genome.wustl.edu	37	X	74293529	74293529	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	X	74293529	74293529	C	A	SNP	ABCB7	ENST00000253577	human	ensembl	74_37	-1	known	missense	c.1030	p.V344L	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB7	HGNC	ENSG00000131269	tier1	-	-	21	0	0.00	6	10	62.50
OR2A12	0	genome.wustl.edu	37	7	143792436	143792436	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	7	143792436	143792436	A	C	SNP	OR2A12	ENST00000408949	human	ensembl	74_37	+1	known	missense	c.236	p.K79T	0.946	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2A12	HGNC	ENSG00000221858	tier1	-	-	48	0	0.00	43	8	15.69
COL6A5	0	genome.wustl.edu	37	3	130162343	130162343	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	3	130162343	130162343	C	T	SNP	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	missense	c.6511	p.P2171S	0.031	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	tier1	-	-	29	0	0.00	26	15	36.59
LRP1B	0	genome.wustl.edu	37	2	141598583	141598583	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	2	141598583	141598583	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.5018	p.T1673M	1.000	smart_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	rs199519370	-	64	0	0.00	35	21	37.50
CHDH	0	genome.wustl.edu	37	3	53857426	53857426	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	3	53857426	53857426	C	T	SNP	CHDH	ENST00000315251	human	ensembl	74_37	-1	known	missense	c.610	p.E204K	0.998	pfam_GMC_OxRdtase_N,pirsf_GMC_OxRdtase	pfam_GMC_OxRdtase_N,pfam_GMC_OxRtase_C,pirsf_GMC_OxRdtase	-	no_errors	CHDH	HGNC	ENSG00000016391	tier1	-	-	57	0	0.00	22	11	33.33
CD84	0	genome.wustl.edu	37	1	160520931	160520931	+	RNA	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	160520931	160520931	G	A	SNP	CD84	ENST00000466767	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD84	HGNC	ENSG00000066294	tier1	-	-	31	0	0.00	169	23	11.92
NDN	0	genome.wustl.edu	37	15	23931596	23931596	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	15	23931596	23931596	C	T	SNP	NDN	ENST00000331837	human	ensembl	74_37	-1	known	missense	c.769	p.E257K	0.055	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	NDN	HGNC	ENSG00000182636	tier1	-	-	62	0	0.00	62	128	67.37
FAM230B	0	genome.wustl.edu	37	22	21538161	21538161	+	RNA	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	22	21538161	21538161	C	T	SNP	FAM230B	ENST00000451257	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM230B	HGNC	ENSG00000215498	tier1	rs111441301	-	42	0	0.00	23	4	14.81
PRKAB2	0	genome.wustl.edu	37	1	146638473	146638473	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	146638473	146638473	G	T	SNP	PRKAB2	ENST00000254101	human	ensembl	74_37	-1	known	missense	c.369	p.H123Q	1.000	superfamily_Ig_E-set	pfam_AMP_prot_kin_bsu_interact-dom,superfamily_Ig_E-set	-	no_errors	PRKAB2	HGNC	ENSG00000131791	tier1	-	-	38	0	0.00	23	3	11.54
DNHD1	0	genome.wustl.edu	37	11	6587557	6587557	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	11	6587557	6587557	C	T	SNP	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	missense	c.11140	p.P3714S	0.281	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	tier1	-	-	37	0	0.00	27	23	46.00
MT-RNR2	0	genome.wustl.edu	37	MT	2226	2226	+	RNA	SNP	T	T	C			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	MT	2226	2226	T	C	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	99	0	0.00	79	208	72.47
CD96	0	genome.wustl.edu	37	3	111342635	111342635	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	3	111342635	111342635	T	A	SNP	CD96	ENST00000283285	human	ensembl	74_37	+1	known	missense	c.1263	p.D421E	0.004	NULL	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	CD96	HGNC	ENSG00000153283	tier1	-	-	19	0	0.00	18	8	30.77
FAM109A	0	genome.wustl.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	GCCACCCCC	GCCACCCCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	12	111800827	111800835	GCCACCCCC	-	DEL	FAM109A	ENST00000450786	human	ensembl	74_37	-1	known	in_frame_del	c.347_339	p.GVA114in_frame_del	0.001:0.308:0.277:0.305:0.327:0.238:0.022:0.211:0.225	NULL	NULL	-	no_errors	FAM109A	HGNC	ENSG00000198324	tier1			NA	NA	NA	NA	NA	NA
ENSG00000235994	0	genome.wustl.edu	37	6	168377071	168377071	+	RNA	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	6	168377071	168377071	G	A	SNP	ENSG00000235994	ENST00000538528	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.713	-	-	-	no_errors	RP3-470B24.5	Clone_based_vega_gene	ENSG00000235994	tier1	rs201618689	-	23	0	0.00	49	8	14.04
BRD7	0	genome.wustl.edu	37	16	50357558	50357558	+	Silent	SNP	A	A	G			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	16	50357558	50357558	A	G	SNP	BRD7	ENST00000394689	human	ensembl	74_37	-1	known	silent	c.1383	p.D461	0.919	pfam_DUF3512	pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	BRD7	HGNC	ENSG00000166164	tier1	-	-	54	0	0.00	42	21	33.33
FBN2	0	genome.wustl.edu	37	5	127712460	127712460	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	5	127712460	127712460	C	G	SNP	FBN2	ENST00000262464	human	ensembl	74_37	-1	known	missense	c.1936	p.G646R	1.000	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_FBN,pfam_EGF-like_Ca-bd_dom,pfam_EG-like_dom,pfam_TB_dom,superfamily_TB_dom,superfamily_Cadherin-like,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	FBN2	HGNC	ENSG00000138829	tier1	-	-	36	0	0.00	23	10	30.30
COL5A1	0	genome.wustl.edu	37	9	137600586	137600586	+	RNA	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	9	137600586	137600586	G	A	SNP	COL5A1	ENST00000464187	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	COL5A1	HGNC	ENSG00000130635	tier1	-	-	36	0	0.00	35	11	23.91
KIAA1549	0	genome.wustl.edu	37	7	138554310	138554310	+	Silent	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	7	138554310	138554310	G	A	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	silent	c.4749	p.P1583	0.992	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	tier1	-	-	33	0	0.00	14	13	48.15
OR4S1	0	genome.wustl.edu	37	11	48327964	48327964	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	11	48327964	48327964	T	G	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	missense	c.190	p.L64V	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555	tier1	-	-	68	0	0.00	65	7	9.72
PDE4DIP	0	genome.wustl.edu	37	1	144879468	144879468	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	144879468	144879468	C	T	SNP	PDE4DIP	ENST00000369356	human	ensembl	74_37	-1	known	missense	c.3982	p.E1328K	0.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	tier1	-	-	148	0	0.00	111	20	15.27
GCNT6	0	genome.wustl.edu	37	6	10634162	10634162	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	6	10634162	10634162	G	C	SNP	GCNT6	ENST00000417671	human	ensembl	74_37	+1	known	missense	c.170	p.G57A	0.015	NULL	pfam_Glyco_trans_14	-	no_errors	GCNT6	HGNC	ENSG00000205318	tier1	-	-	36	0	0.00	20	7	25.93
LRP1B	0	genome.wustl.edu	37	2	141004703	141004703	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	2	141004703	141004703	A	G	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.13276	p.C4426R	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	34	0	0.00	15	10	40.00
NXPH1	0	genome.wustl.edu	37	7	8791537	8791537	+	RNA	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	7	8791537	8791537	C	T	SNP	NXPH1	ENST00000497400	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.797	-	-	-	no_errors	NXPH1	HGNC	ENSG00000122584	tier1	-	-	21	0	0.00	58	9	13.43
STRN3	0	genome.wustl.edu	37	14	31364784	31364784	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	14	31364784	31364784	G	A	SNP	STRN3	ENST00000357479	human	ensembl	74_37	-1	known	missense	c.2227	p.H743Y	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Striatin_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	STRN3	HGNC	ENSG00000196792	tier1	-	-	45	0	0.00	33	15	31.25
CLPB	0	genome.wustl.edu	37	11	72091328	72091328	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	11	72091328	72091328	C	T	SNP	CLPB	ENST00000294053	human	ensembl	74_37	-1	known	missense	c.643	p.E215K	1.000	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom	pfam_ATPase_AAA-2,pfam_Ankyrin_rpt,pfam_Clp_ATPase_C,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,pfam_Zeta_toxin_domain,pfam_Sigma_54_int,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_AAA+_ATPase,prints_ClpA/B,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	CLPB	HGNC	ENSG00000162129	tier1	-	-	35	0	0.00	13	10	43.48
COL11A1	0	genome.wustl.edu	37	1	103345239	103345239	+	Silent	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	103345239	103345239	C	T	SNP	COL11A1	ENST00000358392	human	ensembl	74_37	-1	known	silent	c.5310	p.A1770	0.998	pfam_Fib_collagen_C,smart_Fib_collagen_C	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A1	HGNC	ENSG00000060718	tier1	-	-	36	0	0.00	36	4	10.00
LMF1	0	genome.wustl.edu	37	16	1025977	1025978	+	RNA	INS	-	-	CAAGGAGCCTCATGAACTCTGTGGACATT			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	16	1025977	1025978	-	CAAGGAGCCTCATGAACTCTGTGGACATT	INS	LMF1	ENST00000562570	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005:0.013	-	-	-	no_errors	RP11-161M6.2	Clone_based_vega_gene	ENSG00000260807	tier1			NA	NA	NA	NA	NA	NA
COL6A3	0	genome.wustl.edu	37	2	238285620	238285620	+	Silent	SNP	A	A	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	2	238285620	238285620	A	T	SNP	COL6A3	ENST00000295550	human	ensembl	74_37	-1	known	silent	c.2865	p.R955	0.001	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,pfam_Prot_inh_Kunz-m,superfamily_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,smart_VWF_A,smart_Prot_inh_Kunz-m,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL6A3	HGNC	ENSG00000163359	tier1	-	-	36	0	0.00	29	13	30.95
GGA2	0	genome.wustl.edu	37	16	23499974	23499974	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	16	23499974	23499974	G	A	SNP	GGA2	ENST00000309859	human	ensembl	74_37	-1	known	missense	c.532	p.P178S	1.000	NULL	pfam_VHS,pfam_GAT,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ENTH_VHS,superfamily_Coatomer/clathrin_app_Ig-like,smart_VHS_subgr,smart_Clathrin_a/b/g-adaptin_app_Ig,pfscan_Clathrin_g-adaptin_app,pfscan_GAT,pfscan_VHS	-	no_errors	GGA2	HGNC	ENSG00000103365	tier1	-	-	70	0	0.00	81	26	24.30
KIAA0125	0	genome.wustl.edu	37	14	106391170	106391170	+	RNA	SNP	T	T	C			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	14	106391170	106391170	T	C	SNP	KIAA0125	ENST00000482999	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.246	-	-	-	no_errors	KIAA0125	HGNC	ENSG00000226777	tier1	-	-	114	0	0.00	82	49	37.40
ETV3	0	genome.wustl.edu	37	1	157105270	157105270	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	157105270	157105270	C	T	SNP	ETV3	ENST00000368192	human	ensembl	74_37	-1	known	missense	c.277	p.A93T	1.000	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	ETV3	HGNC	ENSG00000117036	tier1	-	-	60	0	0.00	65	364	84.65
MAP7D3	0	genome.wustl.edu	37	X	135318413	135318413	+	Silent	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	X	135318413	135318413	C	T	SNP	MAP7D3	ENST00000370663	human	ensembl	74_37	-1	known	silent	c.672	p.R224	0.000	NULL	pfam_MAP7	-	no_errors	MAP7D3	HGNC	ENSG00000129680	tier1	-	-	52	0	0.00	20	35	63.64
PSME4	0	genome.wustl.edu	37	2	54092486	54092486	+	RNA	DEL	A	A	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	2	54092486	54092486	A	-	DEL	PSME4	ENST00000476586	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	PSME4	HGNC	ENSG00000068878	tier1			11	0	0.00	21	2	8.70
ATP2B4	0	genome.wustl.edu	37	1	203680135	203680135	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	203680135	203680135	G	A	SNP	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	missense	c.1930	p.D644N	1.000	superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668	tier1	-	-	33	0	0.00	36	106	74.65
ATP8B3	0	genome.wustl.edu	37	19	1799764	1799764	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	19	1799764	1799764	A	-	DEL	ATP8B3	ENST00000526092	human	ensembl	74_37	-1	putative	frame_shift_del	c.1575	p.F525fs	0.016	NULL	pfam_ATPase_P-typ_transduc_dom_A,superfamily_HAD-like_dom	-	no_errors	ATP8B3	HGNC	ENSG00000130270	tier1			11	0	0.00	15	4	21.05
MROH2B	0	genome.wustl.edu	37	5	41007433	41007433	+	Silent	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	5	41007433	41007433	G	A	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	silent	c.3732	p.G1244	0.957	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495	tier1	-	-	107	0	0.00	51	28	35.44
NBPF9	0	genome.wustl.edu	37	1	144826711	144826711	+	RNA	SNP	T	T	C			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	144826711	144826711	T	C	SNP	NBPF9	ENST00000488888	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	NBPF9	HGNC	ENSG00000168614	tier1	-	-	28	0	0.00	63	13	17.11
TTYH3	0	genome.wustl.edu	37	7	2696139	2696139	+	Silent	SNP	C	C	T			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	7	2696139	2696139	C	T	SNP	TTYH3	ENST00000258796	human	ensembl	74_37	+1	known	silent	c.1221	p.C407	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH3	HGNC	ENSG00000136295	tier1	rs200862283	-	42	0	0.00	79	9	10.23
ATP2B4	0	genome.wustl.edu	37	1	203680134	203680134	+	Silent	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	1	203680134	203680134	G	A	SNP	ATP2B4	ENST00000357681	human	ensembl	74_37	+1	known	silent	c.1929	p.R643	0.997	superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Ca-transp_plasma	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_ATP_Ca_trans_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_plasma,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2B4	HGNC	ENSG00000058668	tier1	-	-	32	0	0.00	36	107	74.83
ENSG00000268081	0	genome.wustl.edu	37	19	21752033	21752033	+	RNA	DEL	G	G	-			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	19	21752033	21752033	G	-	DEL	ENSG00000268081	ENST00000594564	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	RP11-678G14.2	Clone_based_vega_gene	ENSG00000268081	tier1			63	0	0.00	56	12	17.65
DDX24	0	genome.wustl.edu	37	14	94517533	94517534	+	RNA	INS	-	-	CACGG			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	14	94517533	94517534	-	CACGG	INS	DDX24	ENST00000553400	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DDX24	HGNC	ENSG00000089737	tier1			NA	NA	NA	NA	NA	NA
N4BP2	0	genome.wustl.edu	37	4	40099030	40099030	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A23U-01A-11D-A26G-09	TCGA-DX-A23U-10A-01D-A26G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	571ba70b-dd96-423d-bd14-2160fe033925	0d978ebb-cdad-48a2-bc30-1d9abdd6e645	4	40099030	40099030	G	A	SNP	N4BP2	ENST00000261435	human	ensembl	74_37	+1	known	missense	c.70	p.V24I	0.035	NULL	pfam_DUF1771,pfam_Smr/MutS2_C,superfamily_P-loop_NTPase,superfamily_UBA-like,smart_Smr/MutS2_C,pfscan_CUE,pfscan_Smr/MutS2_C	-	no_errors	N4BP2	HGNC	ENSG00000078177	tier1	-	-	33	0	0.00	29	11	27.50
