Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ALOX12B	0	genome.wustl.edu	37	17	7980435	7980435	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	17	7980435	7980435	G	A	SNP	ALOX12B	ENST00000319144	human	ensembl	74_37	-1	known	missense	c.1148	p.T383M	0.987	pfam_LipOase_C,superfamily_LipOase_C,prints_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_C,prints_LipOase_mml	-	no_errors	ALOX12B	HGNC	ENSG00000179477	tier1	-	-	41	0	0.00	24	21	46.67
C1orf101	0	genome.wustl.edu	37	1	244780873	244780873	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	244780873	244780873	G	C	SNP	C1orf101	ENST00000366531	human	ensembl	74_37	+1	known	missense	c.2080	p.D694H	1.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	tier1	-	-	19	0	0.00	65	22	25.29
XIRP2	0	genome.wustl.edu	37	2	168108282	168108282	+	Silent	SNP	T	T	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	2	168108282	168108282	T	C	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	silent	c.10380	p.D3460	1.000	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	18	0	0.00	8	8	50.00
LINC00115	0	genome.wustl.edu	37	1	762305	762306	+	RNA	INS	-	-	AG			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	762305	762306	-	AG	INS	LINC00115	ENST00000473798	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	LINC00115	HGNC	ENSG00000225880	tier1			76	0	0.00	49	36	42.35
DDR2	0	genome.wustl.edu	37	1	162735847	162735847	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	162735847	162735847	A	G	SNP	DDR2	ENST00000367921	human	ensembl	74_37	+1	known	missense	c.1156	p.T386A	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	DDR2	HGNC	ENSG00000162733	tier1	-	-	27	0	0.00	22	18	45.00
ENSG00000225411	0	genome.wustl.edu	37	9	68400525	68400525	+	RNA	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	9	68400525	68400525	C	A	SNP	ENSG00000225411	ENST00000417843	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.106	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene	ENSG00000225411	tier1	rs79614538	-	17	0	0.00	66	16	19.51
PTPN14	0	genome.wustl.edu	37	1	214576257	214576257	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	214576257	214576257	G	T	SNP	PTPN14	ENST00000366956	human	ensembl	74_37	-1	known	missense	c.550	p.Q184K	0.996	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	tier1	-	-	64	0	0.00	19	3	13.64
PTPRQ	0	genome.wustl.edu	37	12	81025993	81025993	+	Silent	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	81025993	81025993	C	T	SNP	PTPRQ	ENST00000266688	human	ensembl	74_37	+1	known	silent	c.5697	p.T1899	0.998	NULL	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRQ	HGNC	ENSG00000139304	tier1	rs138300863	GMAF=0.0005	36	0	0.00	730	144	16.48
SH3BGR	0	genome.wustl.edu	37	21	40883671	40883672	+	In_Frame_Ins	INS	-	-	AGA			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	21	40883671	40883672	-	AGA	INS	SH3BGR	ENST00000333634	human	ensembl	74_37	+1	known	in_frame_ins	c.689_690	p.233in_frame_insE	0.000:0.002	NULL	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGR	HGNC	ENSG00000185437	tier1			41	0	0.00	11	2	15.38
ALG2	0	genome.wustl.edu	37	9	101980657	101980657	+	Nonsense_Mutation	SNP	A	A	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	9	101980657	101980657	A	T	SNP	ALG2	ENST00000476832	human	ensembl	74_37	-1	known	nonsense	c.810	p.Y270*	1.000	pfam_Glyco_trans_1	pfam_Glyco_trans_1	-	no_errors	ALG2	HGNC	ENSG00000119523	tier1	-	-	42	0	0.00	24	12	33.33
DHX35	0	genome.wustl.edu	37	20	37631425	37631425	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	20	37631425	37631425	G	T	SNP	DHX35	ENST00000252011	human	ensembl	74_37	+1	known	missense	c.766	p.D256Y	1.000	superfamily_P-loop_NTPase	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX35	HGNC	ENSG00000101452	tier1	-	-	29	0	0.00	21	3	12.50
CROCCP2	0	genome.wustl.edu	37	1	16945227	16945227	+	RNA	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	16945227	16945227	G	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	tier1	rs9728628	-	10	0	0.00	20	5	20.00
OBP2B	0	genome.wustl.edu	37	9	136080786	136080786	+	RNA	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	9	136080786	136080786	G	C	SNP	OBP2B	ENST00000461961	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	OBP2B	HGNC	ENSG00000171102	tier1	-	-	62	0	0.00	20	23	53.49
NDC80	0	genome.wustl.edu	37	18	2577855	2577855	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	18	2577855	2577855	G	T	SNP	NDC80	ENST00000261597	human	ensembl	74_37	+1	known	missense	c.290	p.R97L	1.000	pfam_Kinetochore_Ndc80	pfam_Kinetochore_Ndc80,superfamily_t-SNARE	-	no_errors	NDC80	HGNC	ENSG00000080986	tier1	-	-	38	0	0.00	17	3	15.00
SH2D4B	0	genome.wustl.edu	37	10	82394246	82394246	+	Silent	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	10	82394246	82394246	C	A	SNP	SH2D4B	ENST00000470604	human	ensembl	74_37	+1	known	silent	c.1188	p.L396	0.996	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	SH2D4B	HGNC	ENSG00000178217	tier1	-	-	27	0	0.00	29	4	12.12
OR51I2	0	genome.wustl.edu	37	11	5474866	5474866	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	11	5474866	5474866	C	T	SNP	OR51I2	ENST00000341449	human	ensembl	74_37	+1	known	nonsense	c.148	p.R50*	0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51I2	HGNC	ENSG00000187918	tier1	rs145725236	GMAF=0.0005	37	0	0.00	53	5	8.62
GRID1	0	genome.wustl.edu	37	10	87362184	87362184	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	10	87362184	87362184	G	A	SNP	GRID1	ENST00000327946	human	ensembl	74_37	-1	known	missense	c.2876	p.A959V	1.000	NULL	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRID1	HGNC	ENSG00000182771	tier1	-	-	24	0	0.00	38	23	37.70
CPT1A	0	genome.wustl.edu	37	11	68529106	68529106	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	11	68529106	68529106	T	A	SNP	CPT1A	ENST00000265641	human	ensembl	74_37	-1	known	missense	c.1925	p.H642L	0.004	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT1A	HGNC	ENSG00000110090	tier1	-	-	44	0	0.00	14	34	70.83
AMZ1	0	genome.wustl.edu	37	7	2741864	2741918	+	RNA	DEL	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG	-			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	7	2741864	2741918	TGCCCCAGCCAGGCTGGCATTTTGCAGCCATGCAGCCTGGCTCTGTGTCCTGCTG	-	DEL	AMZ1	ENST00000485540	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.003:0.002:0.002:0.002:0.003:0.003:0.001:0.005:0.071:0.077:0.080:0.076:0.071:0.067:0.056:0.014:0.004:0.001:0.002:0.002:0.000:0.001:0.002:0.003:0.004:0.005:0.002:0.002:0.002:0.002:0.002:0.002:0.003:0.000:0.001:0.001:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AMZ1	HGNC	ENSG00000174945	tier1			NA	NA	NA	NA	NA	NA
TRIOBP	0	genome.wustl.edu	37	22	38131066	38131066	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	22	38131066	38131066	G	A	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	missense	c.4723	p.A1575T	0.040	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	tier1	-	-	35	0	0.00	14	10	41.67
ENSG00000221689	0	genome.wustl.edu	37	2	124439726	124439726	+	RNA	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	2	124439726	124439726	C	A	SNP	ENSG00000221689	ENST00000408762	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.086	-	-	-	no_errors	AC092646.3	Clone_based_ensembl_gene	ENSG00000221689	tier1	-	-	33	0	0.00	69	8	10.39
LINC00482	0	genome.wustl.edu	37	17	79278308	79278308	+	RNA	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	17	79278308	79278308	G	T	SNP	LINC00482	ENST00000332012	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LINC00482	HGNC	ENSG00000185168	tier1	-	-	27	0	0.00	26	4	13.33
POM121L9P	0	genome.wustl.edu	37	22	24659950	24659950	+	RNA	DEL	C	C	-			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	22	24659950	24659950	C	-	DEL	POM121L9P	ENST00000414583	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	POM121L9P	HGNC	ENSG00000128262	tier1			22	0	0.00	19	2	9.52
RNF113A	0	genome.wustl.edu	37	X	119005266	119005266	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	X	119005266	119005266	C	T	SNP	RNF113A	ENST00000371442	human	ensembl	74_37	-1	known	missense	c.311	p.R104H	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113A	HGNC	ENSG00000125352	tier1	-	-	27	0	0.00	22	10	31.25
TEX15	0	genome.wustl.edu	37	8	30694789	30694789	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	8	30694789	30694789	T	-	DEL	TEX15	ENST00000256246	human	ensembl	74_37	-1	known	frame_shift_del	c.7862	p.N2621fs	0.000	NULL	NULL	-	no_errors	TEX15	HGNC	ENSG00000133863	tier1			37	0	0.00	33	12	26.67
VPS33A	0	genome.wustl.edu	37	12	122735534	122735534	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	122735534	122735534	G	T	SNP	VPS33A	ENST00000267199	human	ensembl	74_37	-1	known	missense	c.596	p.A199D	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	VPS33A	HGNC	ENSG00000139719	tier1	-	-	54	0	0.00	31	4	11.43
IGSF1	0	genome.wustl.edu	37	X	130419397	130419397	+	Silent	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	X	130419397	130419397	G	A	SNP	IGSF1	ENST00000370903	human	ensembl	74_37	-1	known	silent	c.423	p.P141	0.000	smart_Ig_sub	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	IGSF1	HGNC	ENSG00000147255	tier1	-	-	11	0	0.00	4	5	55.56
OR2T4	0	genome.wustl.edu	37	1	248525251	248525251	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	248525251	248525251	G	C	SNP	OR2T4	ENST00000366475	human	ensembl	74_37	+1	known	missense	c.369	p.K123N	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T4	HGNC	ENSG00000196944	tier1	-	-	118	0	0.00	68	13	16.05
CPZ	0	genome.wustl.edu	37	4	8602867	8602867	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	4	8602867	8602867	C	A	SNP	CPZ	ENST00000360986	human	ensembl	74_37	+1	known	missense	c.139	p.Q47K	0.013	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Peptidase_M14,pfam_Frizzled_dom,superfamily_Frizzled_dom,superfamily_CarboxyPept-like_regulatory,smart_Frizzled_dom,smart_Peptidase_M14,prints_Peptidase_M14,pfscan_Frizzled_dom	-	no_errors	CPZ	HGNC	ENSG00000109625	tier1	-	-	60	0	0.00	54	5	8.33
LOC101927981	0	genome.wustl.edu	37	12	68727007	68727008	+	RNA	INS	-	-	ATTTATTTATTC			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	68727007	68727008	-	ATTTATTTATTC	INS	LOC101927981	ENST00000539404	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.001	-	-	-	no_errors	RP11-81H14.2	Clone_based_vega_gene	ENSG00000251301	tier1			NA	NA	NA	NA	NA	NA
MBL2	0	genome.wustl.edu	37	10	54530489	54530489	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	10	54530489	54530489	G	A	SNP	MBL2	ENST00000373968	human	ensembl	74_37	-1	known	missense	c.245	p.P82L	0.910	pfam_Collagen	pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	MBL2	HGNC	ENSG00000165471	tier1	-	-	43	0	0.00	34	22	39.29
KRT1	0	genome.wustl.edu	37	12	53072523	53072523	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	53072523	53072523	C	A	SNP	KRT1	ENST00000252244	human	ensembl	74_37	-1	known	missense	c.609	p.Q203H	1.000	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	tier1	-	-	31	0	0.00	33	20	37.74
NSUN6	0	genome.wustl.edu	37	10	18874990	18874990	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	10	18874990	18874990	G	C	SNP	NSUN6	ENST00000377304	human	ensembl	74_37	-1	known	missense	c.810	p.N270K	0.230	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom	pfam_Fmu/NOL1/Nop2p,pfam_rRNA_MeTrfase_FtsJ_dom,pfam_PUA,superfamily_PUA-like_domain,pfscan_PUA,prints_RCMT	-	no_errors	NSUN6	HGNC	ENSG00000241058	tier1	-	-	42	0	0.00	38	13	25.49
AMY2B	0	genome.wustl.edu	37	1	104116343	104116343	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	104116343	104116343	G	A	SNP	AMY2B	ENST00000361355	human	ensembl	74_37	+1	known	missense	c.527	p.R176H	0.991	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2B	HGNC	ENSG00000240038	tier1	rs144281226	GMAF=0.0005	209	0	0.00	167	79	32.11
IL12RB2	0	genome.wustl.edu	37	1	67804363	67804363	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	67804363	67804363	C	A	SNP	IL12RB2	ENST00000262345	human	ensembl	74_37	+1	known	missense	c.1015	p.Q339K	1.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL-6_rcpt_alpha-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC	ENSG00000081985	tier1	-	-	27	0	0.00	13	21	61.76
KLK5	0	genome.wustl.edu	37	19	51452260	51452260	+	Silent	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	19	51452260	51452260	G	T	SNP	KLK5	ENST00000336334	human	ensembl	74_37	-1	known	silent	c.447	p.G149	0.601	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	KLK5	HGNC	ENSG00000167754	tier1	-	-	24	0	0.00	32	4	11.11
ITGA7	0	genome.wustl.edu	37	12	56081767	56081767	+	Silent	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	56081767	56081767	C	T	SNP	ITGA7	ENST00000555728	human	ensembl	74_37	-1	known	silent	c.3303	p.L1101	0.999	prints_Integrin_alpha	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA7	HGNC	ENSG00000135424	tier1	-	-	36	0	0.00	26	14	35.00
TMEM59L	0	genome.wustl.edu	37	19	18729058	18729058	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	19	18729058	18729058	A	G	SNP	TMEM59L	ENST00000262817	human	ensembl	74_37	+1	known	missense	c.758	p.N253S	0.870	pfam_Uncharacterised_TMEM59	pfam_Uncharacterised_TMEM59	-	no_errors	TMEM59L	HGNC	ENSG00000105696	tier1	-	-	33	0	0.00	26	21	44.68
BRWD1	0	genome.wustl.edu	37	21	40668281	40668281	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	21	40668281	40668281	G	T	SNP	BRWD1	ENST00000333229	human	ensembl	74_37	-1	known	missense	c.358	p.H120N	1.000	NULL	pfam_WD40_repeat,pfam_Bromodomain,superfamily_WD40_repeat_dom,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD1	HGNC	ENSG00000185658	tier1	-	-	26	0	0.00	12	3	20.00
FHOD1	0	genome.wustl.edu	37	16	67272337	67272337	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	16	67272337	67272337	G	T	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	missense	c.387	p.S129R	0.996	superfamily_ARM-type_fold	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723	tier1	-	-	19	0	0.00	11	3	21.43
SLAMF6	0	genome.wustl.edu	37	1	160460928	160460928	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	160460928	160460928	C	G	SNP	SLAMF6	ENST00000368057	human	ensembl	74_37	-1	known	missense	c.633	p.Q211H	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	SLAMF6	HGNC	ENSG00000162739	tier1	-	-	44	0	0.00	32	11	25.58
ABCA13	0	genome.wustl.edu	37	7	48556449	48556449	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	7	48556449	48556449	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.13769	p.R4590Q	0.054	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	tier1	-	-	68	0	0.00	60	40	40.00
LUZP2	0	genome.wustl.edu	37	11	25071591	25071591	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	11	25071591	25071591	A	G	SNP	LUZP2	ENST00000336930	human	ensembl	74_37	+1	known	missense	c.773	p.Q258R	0.000	NULL	NULL	-	no_errors	LUZP2	HGNC	ENSG00000187398	tier1	-	-	38	0	0.00	12	24	66.67
NLRP14	0	genome.wustl.edu	37	11	7092514	7092514	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	11	7092514	7092514	A	G	SNP	NLRP14	ENST00000299481	human	ensembl	74_37	+1	known	missense	c.3257	p.D1086G	0.566	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP14	HGNC	ENSG00000158077	tier1	-	-	51	0	0.00	12	21	63.64
DMAP1	0	genome.wustl.edu	37	1	44686023	44686023	+	RNA	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	44686023	44686023	G	A	SNP	DMAP1	ENST00000494092	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DMAP1	HGNC	ENSG00000178028	tier1	-	-	19	0	0.00	14	6	30.00
S100A5	0	genome.wustl.edu	37	1	153512667	153512667	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	153512667	153512667	T	C	SNP	S100A5	ENST00000359215	human	ensembl	74_37	-1	known	missense	c.55	p.M19V	0.722	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	S100A5	HGNC	ENSG00000196420	tier1	-	-	47	0	0.00	38	23	37.70
TDRD6	0	genome.wustl.edu	37	6	46660414	46660415	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	6	46660414	46660415	-	A	INS	TDRD6	ENST00000316081	human	ensembl	74_37	+1	known	frame_shift_ins	c.4549_4550	p.M1520fs	0.002:0.009	pfam_Tudor	pfam_Tudor,smart_Tudor,pfscan_Tudor	-	no_errors	TDRD6	HGNC	ENSG00000180113	tier1			21	0	0.00	19	4	17.39
TBC1D9B	0	genome.wustl.edu	37	5	179300189	179300189	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	5	179300189	179300189	G	A	SNP	TBC1D9B	ENST00000356834	human	ensembl	74_37	-1	known	missense	c.2246	p.A749V	1.000	superfamily_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,pfam_GRAM,superfamily_Rab-GTPase-TBC_dom,smart_GRAM,smart_Rab-GTPase-TBC_dom,pfscan_EF_hand_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D9B	HGNC	ENSG00000197226	tier1	-	-	29	0	0.00	10	16	61.54
ENSG00000237301	0	genome.wustl.edu	37	1	15913149	15913167	+	RNA	DEL	AGCCTCCACTCTGGAGTGG	AGCCTCCACTCTGGAGTGG	-			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	AGCCTCCACTCTGGAGTGG	AGCCTCCACTCTGGAGTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	15913149	15913167	AGCCTCCACTCTGGAGTGG	-	DEL	ENSG00000237301	ENST00000428945	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026:0.032:0.033:0.037:0.044:0.067:0.106:0.115:0.114:0.102:0.095:0.070:0.067:0.067:0.067:0.066:0.065:0.064:0.062	-	-	-	no_errors	RP4-680D5.2	Clone_based_vega_gene	ENSG00000237301	tier1			NA	NA	NA	NA	NA	NA
EMB	0	genome.wustl.edu	37	5	49723998	49723998	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	5	49723998	49723998	C	T	SNP	EMB	ENST00000303221	human	ensembl	74_37	-1	known	missense	c.176	p.S59N	0.350	NULL	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	EMB	HGNC	ENSG00000170571	tier1	-	-	38	0	0.00	39	4	9.30
KMT2E	0	genome.wustl.edu	37	7	104745892	104745892	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	7	104745892	104745892	G	T	SNP	KMT2E	ENST00000257745	human	ensembl	74_37	+1	known	missense	c.2203	p.V735F	1.000	NULL	pfam_SET_dom,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_SET_dom,pfscan_SET_dom,pfscan_Znf_PHD-finger	-	no_errors	KMT2E	HGNC	ENSG00000005483	tier1	-	-	28	0	0.00	37	4	9.30
XPOT	0	genome.wustl.edu	37	12	64823969	64823969	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	64823969	64823969	G	T	SNP	XPOT	ENST00000332707	human	ensembl	74_37	+1	known	missense	c.1878	p.E626D	0.996	superfamily_ARM-type_fold	pfam_Exportin-1/Importin-b-like,pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	XPOT	HGNC	ENSG00000184575	tier1	-	-	34	0	0.00	23	20	45.45
OBP2A	0	genome.wustl.edu	37	9	138441695	138441695	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	9	138441695	138441695	C	G	SNP	OBP2A	ENST00000340780	human	ensembl	74_37	+1	known	missense	c.592	p.L198V	0.008	NULL	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	-	no_errors	OBP2A	HGNC	ENSG00000122136	tier1	-	-	127	0	0.00	119	11	8.46
SNORA72	0	genome.wustl.edu	37	8	99054836	99054837	+	RNA	INS	-	-	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	8	99054836	99054837	-	A	INS	SNORA72	ENST00000501016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.049	-	-	-	no_errors	KB-1208A12.3	Clone_based_vega_gene	ENSG00000245970	tier1			13	0	0.00	22	14	38.89
ADAM33	0	genome.wustl.edu	37	20	3652874	3652874	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	20	3652874	3652874	G	C	SNP	ADAM33	ENST00000356518	human	ensembl	74_37	-1	known	missense	c.1504	p.L502V	0.998	superfamily_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin	pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM33	HGNC	ENSG00000149451	tier1	-	-	41	0	0.00	34	16	32.00
ZFAS1	0	genome.wustl.edu	37	20	47895155	47895155	+	RNA	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	20	47895155	47895155	G	A	SNP	ZFAS1	ENST00000371743	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.537	-	-	-	no_errors	ZFAS1	HGNC	ENSG00000177410	tier1	-	-	64	0	0.00	22	22	50.00
SMG6	0	genome.wustl.edu	37	17	2203218	2203218	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	17	2203218	2203218	C	A	SNP	SMG6	ENST00000263073	human	ensembl	74_37	-1	known	nonsense	c.829	p.G277*	1.000	NULL	pfam_EST1,smart_PIN_dom	-	no_errors	SMG6	HGNC	ENSG00000070366	tier1	-	-	59	0	0.00	33	34	50.75
FLT3	0	genome.wustl.edu	37	13	28608485	28608485	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	13	28608485	28608485	G	T	SNP	FLT3	ENST00000380982	human	ensembl	74_37	-1	known	missense	c.1657	p.L553I	0.599	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	FLT3	HGNC	ENSG00000122025	tier1	-	-	35	0	0.00	18	3	14.29
FUT1	0	genome.wustl.edu	37	19	49253926	49253926	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	19	49253926	49253926	C	T	SNP	FUT1	ENST00000310160	human	ensembl	74_37	-1	known	missense	c.613	p.G205S	0.000	pfam_Glyco_trans_11	pfam_Glyco_trans_11	-	no_errors	FUT1	HGNC	ENSG00000174951	tier1	-	-	14	0	0.00	3	8	72.73
GPRIN3	0	genome.wustl.edu	37	4	90170621	90170621	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	4	90170621	90170621	G	A	SNP	GPRIN3	ENST00000333209	human	ensembl	74_37	-1	known	missense	c.641	p.S214F	0.001	NULL	NULL	-	no_errors	GPRIN3	HGNC	ENSG00000185477	tier1	-	-	54	0	0.00	27	10	27.03
ZNF761	0	genome.wustl.edu	37	19	53959188	53959188	+	RNA	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	19	53959188	53959188	G	A	SNP	ZNF761	ENST00000334095	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	tier1	rs144532705	-	34	0	0.00	18	49	73.13
FAM151A	0	genome.wustl.edu	37	1	55077385	55077385	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	55077385	55077385	G	C	SNP	FAM151A	ENST00000302250	human	ensembl	74_37	-1	known	missense	c.834	p.D278E	0.997	pfam_DUF2181	pfam_DUF2181	-	no_errors	FAM151A	HGNC	ENSG00000162391	tier1	-	-	29	0	0.00	24	12	33.33
CEP350	0	genome.wustl.edu	37	1	179989287	179989287	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	1	179989287	179989287	C	-	DEL	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	frame_shift_del	c.2378	p.T793fs	0.983	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	tier1			12	0	0.00	9	12	57.14
MGA	0	genome.wustl.edu	37	15	42058229	42058229	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	15	42058229	42058229	G	T	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	missense	c.7949	p.R2650L	1.000	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	tier1	-	-	25	0	0.00	17	3	15.00
NKAIN2	0	genome.wustl.edu	37	6	124979412	124979412	+	Silent	SNP	G	G	A			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	6	124979412	124979412	G	A	SNP	NKAIN2	ENST00000368417	human	ensembl	74_37	+1	known	silent	c.354	p.T118	0.436	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN2	HGNC	ENSG00000188580	tier1	rs142736368	-	37	0	0.00	37	17	31.48
ATXN7L1	0	genome.wustl.edu	37	7	105278824	105278824	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	7	105278824	105278824	C	T	SNP	ATXN7L1	ENST00000419735	human	ensembl	74_37	-1	known	missense	c.1178	p.R393K	1.000	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	tier1	-	-	40	0	0.00	50	6	10.71
ENSG00000245482	0	genome.wustl.edu	37	12	34175490	34175490	+	RNA	SNP	A	A	T			TCGA-DX-A2J0-01A-11D-A21Q-09	TCGA-DX-A2J0-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	cb783f8b-d092-4104-b809-3f90b19df7df	eadfba85-5283-41ea-a71a-dc89ac1bab4c	12	34175490	34175490	A	T	SNP	ENSG00000245482	ENST00000501954	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-847H18.2	Clone_based_vega_gene	ENSG00000245482	tier1	-	-	97	0	0.00	54	43	44.33
