Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PPP1R1A	0	genome.wustl.edu	37	12	54975830	54975830	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	12	54975830	54975830	C	G	SNP	PPP1R1A	ENST00000257905	human	ensembl	74_37	-1	known	missense	c.333	p.Q111H	1.000	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	tier1	-	-	40	0	0.00	40	255	86.44
EDEM3	0	genome.wustl.edu	37	1	184680917	184680917	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	1	184680917	184680917	C	A	SNP	EDEM3	ENST00000318130	human	ensembl	74_37	-1	known	missense	c.1631	p.S544I	1.000	NULL	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406	tier1	-	-	89	0	0.00	80	20	20.00
GPRIN1	0	genome.wustl.edu	37	5	176026122	176026134	+	Frame_Shift_Del	DEL	CAAAGACCCAGGA	CAAAGACCCAGGA	-			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	CAAAGACCCAGGA	CAAAGACCCAGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	5	176026122	176026134	CAAAGACCCAGGA	-	DEL	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	frame_shift_del	c.714_702	p.D234fs	0.000:0.000:0.000:0.001:0.004:0.001:0.000:0.000:0.101:0.106:0.114:0.091:0.008	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	tier1			NA	NA	NA	NA	NA	NA
KCNH8	0	genome.wustl.edu	37	3	19575241	19575241	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	3	19575241	19575241	G	C	SNP	KCNH8	ENST00000328405	human	ensembl	74_37	+1	known	missense	c.2974	p.D992H	0.896	NULL	pfam_Ion_trans_dom,pfam_cNMP-bd_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_4,pfam_PAS_fold,superfamily_cNMP-bd-like,superfamily_PAS,superfamily_tRNA-bd_arm,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,prints_K_chnl_volt-dep_EAG,tigrfam_PAS	-	no_errors	KCNH8	HGNC	ENSG00000183960	tier1	-	-	49	0	0.00	34	4	10.53
DUSP21	0	genome.wustl.edu	37	X	44703772	44703772	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	X	44703772	44703772	G	A	SNP	DUSP21	ENST00000339042	human	ensembl	74_37	+1	known	missense	c.394	p.A132T	1.000	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP_famB,prints_Atypical_DUSP	-	no_errors	DUSP21	HGNC	ENSG00000189037	tier1	-	-	21	0	0.00	14	6	30.00
ANKRD30BL	0	genome.wustl.edu	37	2	133015334	133015334	+	RNA	SNP	G	G	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	2	133015334	133015334	G	T	SNP	ANKRD30BL	ENST00000470729	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	tier1	-	-	35	0	0.00	29	9	23.68
R3HDM2	0	genome.wustl.edu	37	12	57693914	57693914	+	Silent	SNP	G	G	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	12	57693914	57693914	G	A	SNP	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	silent	c.258	p.S86	0.998	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	tier1	-	-	34	0	0.00	37	29	43.94
PRX	0	genome.wustl.edu	37	19	40900180	40900182	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	19	40900180	40900182	TCC	-	DEL	PRX	ENST00000324001	human	ensembl	74_37	-1	known	in_frame_del	c.4079_4077	p.E1361in_frame_del	0.908:0.904:0.008	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	tier1			21	0	0.00	23	2	8.00
LOC100996870	0	genome.wustl.edu	37	9	66468975	66468975	+	RNA	SNP	G	G	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	9	66468975	66468975	G	A	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113	tier1	rs2321615	-	18	0	0.00	8	4	33.33
SLC4A8	0	genome.wustl.edu	37	12	51857442	51857442	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	12	51857442	51857442	C	G	SNP	SLC4A8	ENST00000453097	human	ensembl	74_37	+1	known	missense	c.1293	p.H431Q	0.984	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A8	HGNC	ENSG00000050438	tier1	-	-	51	0	0.00	334	118	26.11
OR52E6	0	genome.wustl.edu	37	11	5863176	5863176	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	11	5863176	5863176	T	C	SNP	OR52E6	ENST00000379946	human	ensembl	74_37	-1	known	missense	c.7	p.K3E	0.034	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52E6	HGNC	ENSG00000205409	tier1	-	-	42	0	0.00	32	9	21.95
IL17RA	0	genome.wustl.edu	37	22	17579665	17579665	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	22	17579665	17579665	C	T	SNP	IL17RA	ENST00000319363	human	ensembl	74_37	+1	known	missense	c.311	p.A104V	1.000	NULL	pfam_SEFIR	-	no_errors	IL17RA	HGNC	ENSG00000177663	tier1	-	-	37	0	0.00	47	9	16.07
MT-RNR2	0	genome.wustl.edu	37	MT	1884	1884	+	RNA	SNP	G	G	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	MT	1884	1884	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	22	0	0.00	13	25	65.79
ENSG00000235117	0	genome.wustl.edu	37	9	139931682	139931683	+	RNA	INS	-	-	GTGGGC			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	9	139931682	139931683	-	GTGGGC	INS	ENSG00000235117	ENST00000457302	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.018:0.034	-	-	-	no_errors	RP11-229P13.20	Clone_based_vega_gene	ENSG00000235117	tier1			NA	NA	NA	NA	NA	NA
PSG2	0	genome.wustl.edu	37	19	43585990	43585990	+	RNA	DEL	T	T	-			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	19	43585990	43585990	T	-	DEL	PSG2	ENST00000491995	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	PSG2	HGNC	ENSG00000242221	tier1			20	0	0.00	21	3	12.50
E2F7	0	genome.wustl.edu	37	12	77458410	77458410	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	12	77458410	77458410	C	G	SNP	E2F7	ENST00000322886	human	ensembl	74_37	-1	known	missense	c.6	p.E2D	1.000	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891	tier1	-	-	35	0	0.00	37	80	68.38
CTTN	0	genome.wustl.edu	37	11	70255965	70255965	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	11	70255965	70255965	C	T	SNP	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	nonsense	c.190	p.Q64*	0.996	NULL	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733	tier1	-	-	37	0	0.00	79	15	15.96
GRIA1	0	genome.wustl.edu	37	5	153065889	153065889	+	Silent	SNP	G	G	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	5	153065889	153065889	G	A	SNP	GRIA1	ENST00000448073	human	ensembl	74_37	+1	known	silent	c.1164	p.K388	1.000	superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA1	HGNC	ENSG00000155511	tier1	-	-	25	0	0.00	30	8	21.05
C10orf131	0	genome.wustl.edu	37	10	97684071	97684071	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	10	97684071	97684071	A	T	SNP	C10orf131	ENST00000423344	human	ensembl	74_37	+1	known	missense	c.74	p.D25V	0.113	NULL	NULL	-	no_errors	C10orf131	HGNC	ENSG00000173088	tier1	-	-	69	0	0.00	57	7	10.94
DLGAP1	0	genome.wustl.edu	37	18	3879315	3879315	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	18	3879315	3879315	G	A	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.754	p.R252W	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	tier1	-	-	49	0	0.00	30	7	18.92
PPP1R1A	0	genome.wustl.edu	37	12	54975829	54975829	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	12	54975829	54975829	C	T	SNP	PPP1R1A	ENST00000257905	human	ensembl	74_37	-1	known	missense	c.334	p.E112K	1.000	pfam_PPI_1DARPP-32	pfam_PPI_1DARPP-32	-	no_errors	PPP1R1A	HGNC	ENSG00000135447	tier1	-	-	40	0	0.00	39	251	86.55
KCNH4	0	genome.wustl.edu	37	17	40321679	40321679	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	17	40321679	40321679	A	G	SNP	KCNH4	ENST00000264661	human	ensembl	74_37	-1	known	missense	c.1406	p.V469A	1.000	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_ELK	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold_3,pfam_PAS_fold,pfam_PAS_4,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH4	HGNC	ENSG00000089558	tier1	-	-	66	0	0.00	53	11	17.19
MT-ND5	0	genome.wustl.edu	37	MT	12508	12508	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	MT	12508	12508	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.172	p.D58N	NULL	tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	-	-	54	0	0.00	21	30	58.82
EPHA5	0	genome.wustl.edu	37	4	66356412	66356412	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	4	66356412	66356412	C	T	SNP	EPHA5	ENST00000273854	human	ensembl	74_37	-1	known	missense	c.1085	p.R362Q	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Fibronectin_type3,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pirsf_Tyr_kinase_ephrin_rcpt,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHA5	HGNC	ENSG00000145242	tier1	-	-	52	0	0.00	21	10	32.26
FBXW10	0	genome.wustl.edu	37	17	18668118	18668118	+	Silent	SNP	T	T	G			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	17	18668118	18668118	T	G	SNP	FBXW10	ENST00000308799	human	ensembl	74_37	+1	known	silent	c.1584	p.T528	0.998	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW10	HGNC	ENSG00000171931	tier1	-	-	64	0	0.00	45	7	13.46
PRPF3	0	genome.wustl.edu	37	1	150315720	150315726	+	RNA	DEL	AAAAAAT	AAAAAAT	-			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	AAAAAAT	AAAAAAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	1	150315720	150315726	AAAAAAT	-	DEL	PRPF3	ENST00000493553	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001:0.000:0.001:0.000:0.001:0.001	-	-	-	no_errors	PRPF3	HGNC	ENSG00000117360	tier1			NA	NA	NA	NA	NA	NA
KRTAP5-5	0	genome.wustl.edu	37	11	1651227	1651228	+	Frame_Shift_Ins	INS	-	-	GAGGC			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	11	1651227	1651228	-	GAGGC	INS	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	frame_shift_ins	c.157_158	p.A53fs	0.083:0.113	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940	tier1			NA	NA	NA	NA	NA	NA
KIF26A	0	genome.wustl.edu	37	14	104638087	104638087	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	14	104638087	104638087	G	T	SNP	KIF26A	ENST00000423312	human	ensembl	74_37	+1	known	missense	c.1141	p.A381S	0.327	superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	tier1	-	-	51	0	0.00	58	12	17.14
SLC31A2	0	genome.wustl.edu	37	9	115923901	115923901	+	Silent	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	9	115923901	115923901	C	T	SNP	SLC31A2	ENST00000259392	human	ensembl	74_37	+1	known	silent	c.186	p.I62	0.030	pfam_Cop_transporter	pfam_Cop_transporter	-	no_errors	SLC31A2	HGNC	ENSG00000136867	tier1	-	-	33	0	0.00	33	643	94.98
KRTAP5-5	0	genome.wustl.edu	37	11	1651229	1651230	+	Frame_Shift_Ins	INS	-	-	TGGCTCC			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	11	1651229	1651230	-	TGGCTCC	INS	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	frame_shift_ins	c.159_160	p.G53fs	0.325:0.996	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940	tier1			NA	NA	NA	NA	NA	NA
MGAM	0	genome.wustl.edu	37	7	141631634	141631635	+	RNA	INS	-	-	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	7	141631634	141631635	-	A	INS	MGAM	ENST00000497554	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014:0.007	-	-	-	no_errors	MGAM	HGNC	ENSG00000257335	tier1			9	0	0.00	6	5	45.45
ENSG00000203849	0	genome.wustl.edu	37	1	142634555	142634555	+	RNA	SNP	A	A	G			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	1	142634555	142634555	A	G	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.054	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849	tier1	rs4362000	-	8	0	0.00	5	4	44.44
ZNF229	0	genome.wustl.edu	37	19	44934383	44934383	+	Silent	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	19	44934383	44934383	C	T	SNP	ZNF229	ENST00000588931	human	ensembl	74_37	-1	known	silent	c.573	p.A191	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF229	HGNC	ENSG00000167383	tier1	-	-	46	0	0.00	46	6	11.54
SLC6A13	0	genome.wustl.edu	37	12	352956	352956	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	12	352956	352956	C	T	SNP	SLC6A13	ENST00000343164	human	ensembl	74_37	-1	known	missense	c.226	p.V76I	1.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_GABA_GAT2	-	no_errors	SLC6A13	HGNC	ENSG00000010379	tier1	rs147275386	GMAF=0.0005	87	0	0.00	53	5	8.62
KCNJ6	0	genome.wustl.edu	37	21	39086687	39086687	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	21	39086687	39086687	G	A	SNP	KCNJ6	ENST00000288309	human	ensembl	74_37	-1	known	missense	c.773	p.T258M	1.000	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir	pfam_K_chnl_inward-rec_Kir,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir3.2	-	no_errors	KCNJ6	HGNC	ENSG00000157542	tier1	-	-	71	0	0.00	55	7	11.29
ZNF577	0	genome.wustl.edu	37	19	52384073	52384086	+	RNA	DEL	CCAGCCTGGAAGCT	CCAGCCTGGAAGCT	-			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	CCAGCCTGGAAGCT	CCAGCCTGGAAGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	19	52384073	52384086	CCAGCCTGGAAGCT	-	DEL	ZNF577	ENST00000484095	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.003:0.009:0.021:0.024:0.015:0.009:0.010:0.008:0.001:0.000:0.000:0.001:0.002	-	-	-	no_errors	ZNF577	HGNC	ENSG00000161551	tier1			NA	NA	NA	NA	NA	NA
ENSG00000264932	0	genome.wustl.edu	37	17	19552792	19552796	+	RNA	DEL	TTTCT	TTTCT	-			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	TTTCT	TTTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	17	19552792	19552796	TTTCT	-	DEL	ENSG00000264932	ENST00000578640	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004:0.003:0.002:0.001:0.002	-	-	-	no_errors	Y_RNA	RFAM	ENSG00000264932	tier1			NA	NA	NA	NA	NA	NA
LOC100996870	0	genome.wustl.edu	37	9	66466327	66466327	+	RNA	DEL	G	G	-			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	9	66466327	66466327	G	-	DEL	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.090	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113	tier1			9	0	0.00	6	3	33.33
ADAMTS18	0	genome.wustl.edu	37	16	77359769	77359769	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	16	77359769	77359769	C	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	74_37	-1	known	missense	c.2026	p.V676L	1.000	NULL	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC	ENSG00000140873	tier1	rs200959747	GMAF=0.0005	51	0	0.00	46	4	8.00
SLC9C2	0	genome.wustl.edu	37	1	173486699	173486699	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	1	173486699	173486699	C	T	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.2884	p.V962I	0.905	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753	tier1	rs147401558	GMAF=0.0005	47	0	0.00	38	12	24.00
TP53	0	genome.wustl.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	17	7578212	7578212	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.637	p.R213*	0.893	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	63	0	0.00	42	12	22.22
GPRIN1	0	genome.wustl.edu	37	5	176026136	176026146	+	Frame_Shift_Del	DEL	CCTCCTTCCTC	CCTCCTTCCTC	-			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	CCTCCTTCCTC	CCTCCTTCCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	5	176026136	176026146	CCTCCTTCCTC	-	DEL	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	frame_shift_del	c.700_690	p.R231fs	0.001:0.001:0.018:0.050:0.065:0.536:0.053:0.031:0.027:0.000:0.000	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	tier1			NA	NA	NA	NA	NA	NA
SAMD15	0	genome.wustl.edu	37	14	77843764	77843764	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	14	77843764	77843764	G	T	SNP	SAMD15	ENST00000216471	human	ensembl	74_37	+1	known	missense	c.3	p.M1I	0.916	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD15	HGNC	ENSG00000100583	tier1	-	-	31	0	0.00	34	4	10.53
GIMAP8	0	genome.wustl.edu	37	7	150174547	150174547	+	Silent	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	7	150174547	150174547	C	T	SNP	GIMAP8	ENST00000307271	human	ensembl	74_37	+1	known	silent	c.1677	p.Y559	0.009	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP8	HGNC	ENSG00000171115	tier1	-	-	32	0	0.00	19	5	20.83
SMU1	0	genome.wustl.edu	37	9	33056193	33056193	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	9	33056193	33056193	C	A	SNP	SMU1	ENST00000397149	human	ensembl	74_37	-1	known	missense	c.1040	p.G347V	1.000	pfam_WD40_repeat,pfam_Nucleoporin_Nup160,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Nucleoporin_Nup160,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_CTLH_C,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_CTLH_C,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SMU1	HGNC	ENSG00000122692	tier1	-	-	27	0	0.00	38	4	9.52
MUC17	0	genome.wustl.edu	37	7	100682909	100682909	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	7	100682909	100682909	G	T	SNP	MUC17	ENST00000306151	human	ensembl	74_37	+1	known	missense	c.8212	p.G2738C	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	MUC17	HGNC	ENSG00000169876	tier1	-	-	196	0	0.00	148	19	11.38
LOC101929693	0	genome.wustl.edu	37	17	38499264	38499264	+	RNA	SNP	A	A	G			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	17	38499264	38499264	A	G	SNP	LOC101929693	ENST00000581080	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2267D19.2	Clone_based_vega_gene	ENSG00000265666	tier1	-	-	47	0	0.00	44	14	24.14
UBE2V1	0	genome.wustl.edu	37	20	48697884	48697884	+	RNA	SNP	A	A	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	20	48697884	48697884	A	T	SNP	UBE2V1	ENST00000396059	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.185	-	-	-	no_errors	UBE2V1	HGNC	ENSG00000244687	tier1	rs201099481	-	44	0	0.00	57	8	11.76
SNORD3D	0	genome.wustl.edu	37	17	19015643	19015643	+	RNA	SNP	C	C	T			TCGA-DX-A2J1-01A-11D-A21Q-09	TCGA-DX-A2J1-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3278541c-2838-4fda-a6fe-cacf4452baae	c9668713-33ae-4fe6-9a86-f669778a8f53	17	19015643	19015643	C	T	SNP	SNORD3D	ENST00000573866	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	SNORD3D	HGNC	ENSG00000262202	tier1	-	-	39	0	0.00	33	4	10.81
