Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LOC440040	0	genome.wustl.edu	37	11	49598216	49598222	+	RNA	DEL	AGAAGCC	AGAAGCC	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	AGAAGCC	AGAAGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	11	49598216	49598222	AGAAGCC	-	DEL	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035	tier1			NA	NA	NA	NA	NA	NA
GVINP1	0	genome.wustl.edu	37	11	6739525	6739525	+	RNA	SNP	T	T	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	11	6739525	6739525	T	G	SNP	GVINP1	ENST00000526769	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GVINP1	HGNC	ENSG00000254838	tier1	-	-	31	0	0.00	24	8	25.00
STXBP1	0	genome.wustl.edu	37	9	130438208	130438208	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	130438208	130438208	C	G	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	missense	c.1236	p.I412M	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	tier1	-	-	61	0	0.00	43	11	20.37
ABLIM1	0	genome.wustl.edu	37	10	116444077	116444077	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	10	116444077	116444077	G	T	SNP	ABLIM1	ENST00000369252	human	ensembl	74_37	-1	known	missense	c.36	p.D12E	0.963	NULL	pfam_Znf_LIM,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Znf_LIM,smart_Villin_headpiece,pfscan_Villin_headpiece,pfscan_Znf_LIM	-	no_errors	ABLIM1	HGNC	ENSG00000099204	tier1	-	-	53	0	0.00	51	5	8.93
LOC101927832	0	genome.wustl.edu	37	3	142720221	142720222	+	RNA	INS	-	-	GGACAACGA			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	3	142720221	142720222	-	GGACAACGA	INS	LOC101927832	ENST00000595248	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.015	-	-	-	no_errors	RP11-372E1.6	Clone_based_vega_gene	ENSG00000241570	tier1			NA	NA	NA	NA	NA	NA
METTL1	0	genome.wustl.edu	37	12	58163396	58163396	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	58163396	58163396	G	A	SNP	METTL1	ENST00000257848	human	ensembl	74_37	-1	known	missense	c.340	p.H114Y	1.000	NULL	NULL	-	no_errors	METTL1	HGNC	ENSG00000037897	tier1	-	-	39	0	0.00	227	123	35.14
PRB3	0	genome.wustl.edu	37	12	11420936	11420936	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	11420936	11420936	G	A	SNP	PRB3	ENST00000381842	human	ensembl	74_37	-1	known	missense	c.247	p.P83S	0.193	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870	tier1	-	-	59	0	0.00	125	126	50.00
WDFY4	0	genome.wustl.edu	37	10	50098744	50098744	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	10	50098744	50098744	G	C	SNP	WDFY4	ENST00000325239	human	ensembl	74_37	+1	known	missense	c.7288	p.V2430L	0.998	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY4	HGNC	ENSG00000128815	tier1	-	-	63	0	0.00	63	9	12.50
PLD2	0	genome.wustl.edu	37	17	4711609	4711609	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	17	4711609	4711609	G	T	SNP	PLD2	ENST00000263088	human	ensembl	74_37	+1	known	missense	c.281	p.G94V	0.993	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_PLipase_D_euk,pfscan_Phox	pfam_Phox,pfam_PLipase_D/transphosphatidylase,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD2	HGNC	ENSG00000129219	tier1	-	-	28	0	0.00	43	4	8.51
USP6	0	genome.wustl.edu	37	17	5072153	5072153	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	17	5072153	5072153	G	C	SNP	USP6	ENST00000250066	human	ensembl	74_37	+1	known	missense	c.3320	p.S1107T	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom,pfscan_Peptidase_C19/C67	-	no_errors	USP6	HGNC	ENSG00000129204	tier1	-	-	79	0	0.00	94	32	25.40
ENSG00000223669	0	genome.wustl.edu	37	20	61364426	61364427	+	RNA	INS	-	-	ACGTATCCA			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	20	61364426	61364427	-	ACGTATCCA	INS	ENSG00000223669	ENST00000430184	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.055:0.020	-	-	-	no_errors	RP11-93B14.4	Clone_based_vega_gene	ENSG00000223669	tier1			NA	NA	NA	NA	NA	NA
SLC6A18	0	genome.wustl.edu	37	5	1238115	1238115	+	Silent	SNP	C	C	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	1238115	1238115	C	G	SNP	SLC6A18	ENST00000324642	human	ensembl	74_37	+1	known	silent	c.672	p.L224	0.906	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363	tier1	-	-	53	0	0.00	135	162	54.36
FSD1L	0	genome.wustl.edu	37	9	108246756	108246756	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	108246756	108246756	A	G	SNP	FSD1L	ENST00000539376	human	ensembl	74_37	+1	known	missense	c.88	p.M30V	1.000	superfamily_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,prints_Butyrophylin	-	no_errors	FSD1L	HGNC	ENSG00000106701	tier1	-	-	24	0	0.00	18	19	51.35
SNX14	0	genome.wustl.edu	37	6	86251705	86251705	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	6	86251705	86251705	G	T	SNP	SNX14	ENST00000314673	human	ensembl	74_37	-1	known	missense	c.1446	p.N482K	1.000	NULL	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Phox,superfamily_Regulat_G_prot_signal_superfam,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX14	HGNC	ENSG00000135317	tier1	-	-	41	0	0.00	37	4	9.76
METTL1	0	genome.wustl.edu	37	12	58163174	58163174	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	58163174	58163174	G	A	SNP	METTL1	ENST00000324871	human	ensembl	74_37	-1	known	missense	c.587	p.T196I	1.000	pfam_tRNA_(Gua-N-7)_MeTrfase,tigrfam_tRNA_(Gua-N-7)_MeTrfase	pfam_tRNA_(Gua-N-7)_MeTrfase,tigrfam_tRNA_(Gua-N-7)_MeTrfase	-	no_errors	METTL1	HGNC	ENSG00000037897	tier1	-	-	16	0	0.00	99	40	28.78
MT-ND5	0	genome.wustl.edu	37	MT	13471	13471	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	MT	13471	13471	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	74_37	+1	known	missense	c.1135	p.A379T	NULL	pfam_NADH_UbQ/plastoQ_OxRdtase,tigrfam_NADHpl_OxRdtase_5	pfam_NADH_UbQ/plastoQ_OxRdtase,pfam_NADH_DH_su5_C,pfam_NADH_UbQ_OxRdtase_chain5/L_N,tigrfam_NADHpl_OxRdtase_5	-	no_errors	MT-ND5	HGNC	ENSG00000198786	tier1	-	-	25	0	0.00	45	9	16.67
CCNYL2	0	genome.wustl.edu	37	10	42924561	42924594	+	Splice_Site	DEL	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	CACCTTTGCTTGATATGATAATATAGTGCCAAGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	10	42924561	42924594	CACCTTTGCTTGATATGATAATATAGTGCCAAGG	-	DEL	CCNYL2	ENST00000483242	human	ensembl	74_37	-1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:0.995:1.000:1.000:0.999:1.000:0.996:0.996:0.999	-	-	-	no_errors	CCNYL2	HGNC	ENSG00000182632	tier1			NA	NA	NA	NA	NA	NA
POTEA	0	genome.wustl.edu	37	8	43159910	43159910	+	RNA	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	8	43159910	43159910	C	T	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.062	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	tier1	-	-	70	0	0.00	252	201	44.37
RADIL	0	genome.wustl.edu	37	7	4917282	4917282	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	7	4917282	4917282	C	T	SNP	RADIL	ENST00000399583	human	ensembl	74_37	-1	known	silent	c.489	p.S163	0.078	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_Dil_domain,pfam_Ras-assoc,pfam_PDZ,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	RADIL	HGNC	ENSG00000157927	tier1	-	-	81	0	0.00	110	23	17.29
MAGEB1	0	genome.wustl.edu	37	X	30269613	30269613	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	X	30269613	30269613	C	T	SNP	MAGEB1	ENST00000378981	human	ensembl	74_37	+1	known	missense	c.1003	p.R335C	0.000	NULL	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB1	HGNC	ENSG00000214107	tier1	-	-	60	0	0.00	84	18	17.65
FMNL3	0	genome.wustl.edu	37	12	50042925	50042925	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	50042925	50042925	G	A	SNP	FMNL3	ENST00000293590	human	ensembl	74_37	-1	known	missense	c.2402	p.S801F	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FMNL3	HGNC	ENSG00000161791	tier1	-	-	32	0	0.00	62	22	26.19
KCNH3	0	genome.wustl.edu	37	12	49948143	49948143	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	49948143	49948143	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.1942	p.E648K	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_ERG	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	tier1	-	-	73	0	0.00	149	15	9.15
KCNH3	0	genome.wustl.edu	37	12	49948321	49948321	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	49948321	49948321	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.2120	p.G707E	1.000	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	tier1	-	-	44	0	0.00	97	9	8.49
TLN2	0	genome.wustl.edu	37	15	63055824	63055824	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	15	63055824	63055824	G	T	SNP	TLN2	ENST00000306829	human	ensembl	74_37	+1	known	missense	c.5024	p.R1675L	1.000	NULL	pfam_Talin_cent,pfam_ILWEQ_dom,pfam_Vinculin-bd_dom,pfam_FERM_N,pfam_FERM_central,pfam_Insln_rcpt_S1,superfamily_Talin_cent,superfamily_Vinculin/catenin,superfamily_FERM_central,smart_Band_41_domain,smart_ILWEQ_dom,pfscan_FERM_domain,pfscan_ILWEQ_dom	-	no_errors	TLN2	HGNC	ENSG00000171914	tier1	-	-	42	0	0.00	29	4	12.12
ZFP57	0	genome.wustl.edu	37	6	29641137	29641137	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	6	29641137	29641137	G	A	SNP	ZFP57	ENST00000488757	human	ensembl	74_37	-1	known	missense	c.751	p.R251C	0.825	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZFP57	HGNC	ENSG00000204644	tier1	-	-	60	0	0.00	61	22	26.51
METTL1	0	genome.wustl.edu	37	12	58163564	58163564	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	58163564	58163564	G	C	SNP	METTL1	ENST00000324871	human	ensembl	74_37	-1	known	nonsense	c.450	p.Y150*	0.123	pfam_tRNA_(Gua-N-7)_MeTrfase,tigrfam_tRNA_(Gua-N-7)_MeTrfase	pfam_tRNA_(Gua-N-7)_MeTrfase,tigrfam_tRNA_(Gua-N-7)_MeTrfase	-	no_errors	METTL1	HGNC	ENSG00000037897	tier1	-	-	50	0	0.00	267	49	15.51
ARMCX4	0	genome.wustl.edu	37	X	100746403	100746403	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	X	100746403	100746403	G	A	SNP	ARMCX4	ENST00000423738	human	ensembl	74_37	+1	putative	missense	c.2827	p.G943S	0.005	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	-	no_errors	ARMCX4	HGNC	ENSG00000196440	tier1	-	-	36	0	0.00	60	33	35.48
USP29	0	genome.wustl.edu	37	19	57640072	57640072	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	19	57640072	57640072	T	C	SNP	USP29	ENST00000254181	human	ensembl	74_37	+1	known	missense	c.29	p.I10T	0.000	NULL	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	-	no_errors	USP29	HGNC	ENSG00000131864	tier1	-	-	29	0	0.00	43	4	8.51
C9orf96	0	genome.wustl.edu	37	9	136269043	136269043	+	Splice_Site	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	136269043	136269043	G	C	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	splice_site	c.1604-1	e16-1	1.000	-	-	-	no_errors	C9orf96	HGNC	ENSG00000198870	tier1	-	-	51	0	0.00	34	4	10.53
WDFY4	0	genome.wustl.edu	37	10	50098739	50098743	+	Frame_Shift_Del	DEL	GTGAT	GTGAT	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	GTGAT	GTGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	10	50098739	50098743	GTGAT	-	DEL	WDFY4	ENST00000325239	human	ensembl	74_37	+1	known	frame_shift_del	c.7283_7287	p.D2429fs	0.966:0.949:0.993:0.993:0.972	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY4	HGNC	ENSG00000128815	tier1			NA	NA	NA	NA	NA	NA
ENSG00000268568	0	genome.wustl.edu	37	19	57184443	57184444	+	RNA	INS	-	-	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	19	57184443	57184444	-	T	INS	ENSG00000268568	ENST00000602145	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.762:0.770	-	-	-	no_errors	AC007228.9	Clone_based_vega_gene	ENSG00000268568	tier1			9	0	0.00	8	6	42.86
CEL	0	genome.wustl.edu	37	9	135941960	135941960	+	Silent	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	135941960	135941960	G	A	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	silent	c.591	p.V197	1.000	pfam_CarbesteraseB,pfam_AB_hydrolase_3	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	-	-	33	0	0.00	42	5	10.64
KRT16	0	genome.wustl.edu	37	17	39766252	39766252	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	17	39766252	39766252	G	A	SNP	KRT16	ENST00000301653	human	ensembl	74_37	-1	known	missense	c.1357	p.R453C	0.003	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT16	HGNC	ENSG00000186832	tier1	-	-	81	0	0.00	93	23	19.83
SLC18A2	0	genome.wustl.edu	37	10	119014856	119014856	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	10	119014856	119014856	G	A	SNP	SLC18A2	ENST00000298472	human	ensembl	74_37	+1	known	missense	c.769	p.A257T	0.992	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC18A2	HGNC	ENSG00000165646	tier1	rs201547103	-	55	0	0.00	46	10	17.54
KRT10	0	genome.wustl.edu	37	17	38978609	38978609	+	Silent	SNP	A	A	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	17	38978609	38978609	A	G	SNP	KRT10	ENST00000269576	human	ensembl	74_37	-1	known	silent	c.229	p.L77	0.000	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395	tier1	-	-	60	0	0.00	63	13	17.11
MAN1A1	0	genome.wustl.edu	37	6	119514953	119514953	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	6	119514953	119514953	C	T	SNP	MAN1A1	ENST00000368468	human	ensembl	74_37	-1	known	missense	c.1315	p.D439N	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1A1	HGNC	ENSG00000111885	tier1	-	-	45	0	0.00	246	90	26.79
ERBB3	0	genome.wustl.edu	37	12	56480358	56480358	+	Silent	SNP	T	T	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	56480358	56480358	T	G	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	silent	c.465	p.L155	0.680	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	tier1	-	-	49	0	0.00	126	60	32.26
TBC1D5	0	genome.wustl.edu	37	3	17226625	17226625	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	3	17226625	17226625	C	T	SNP	TBC1D5	ENST00000253692	human	ensembl	74_37	-1	known	missense	c.1828	p.A610T	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D5	HGNC	ENSG00000131374	tier1	-	-	87	0	0.00	80	23	22.33
TRRAP	0	genome.wustl.edu	37	7	98592415	98592415	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	7	98592415	98592415	C	T	SNP	TRRAP	ENST00000359863	human	ensembl	74_37	+1	known	missense	c.10211	p.A3404V	1.000	NULL	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	TRRAP	HGNC	ENSG00000196367	tier1	-	-	36	0	0.00	31	5	13.89
SETD1B	0	genome.wustl.edu	37	12	122247833	122247833	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	122247833	122247833	C	T	SNP	SETD1B	ENST00000267197	human	ensembl	74_37	+1	known	missense	c.982	p.H328Y	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1B	HGNC	ENSG00000139718	tier1	-	-	35	0	0.00	129	122	48.61
DNM1P47	0	genome.wustl.edu	37	15	102299838	102299838	+	RNA	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	15	102299838	102299838	G	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.965	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	31	0	0.00	64	7	9.86
ODF3B	0	genome.wustl.edu	37	22	50968892	50968892	+	Silent	SNP	C	C	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	22	50968892	50968892	C	A	SNP	ODF3B	ENST00000405135	human	ensembl	74_37	-1	putative	silent	c.825	p.A275	0.018	NULL	NULL	-	no_errors	ODF3B	HGNC	ENSG00000177989	tier1	-	-	63	0	0.00	43	19	30.65
PCDHGA4	0	genome.wustl.edu	37	5	140735522	140735522	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	140735522	140735522	G	A	SNP	PCDHGA4	ENST00000571252	human	ensembl	74_37	+1	known	missense	c.755	p.R252H	0.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA4	HGNC	ENSG00000262576	tier1	-	-	32	0	0.00	26	5	16.13
GOLGA3	0	genome.wustl.edu	37	12	133384827	133384827	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	133384827	133384827	G	C	SNP	GOLGA3	ENST00000204726	human	ensembl	74_37	-1	known	missense	c.828	p.N276K	0.880	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC	ENSG00000090615	tier1	-	-	14	0	0.00	27	22	44.90
DLC1	0	genome.wustl.edu	37	8	13072066	13072066	+	RNA	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	8	13072066	13072066	C	T	SNP	DLC1	ENST00000506171	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	DLC1	HGNC	ENSG00000164741	tier1	-	-	55	0	0.00	29	7	19.44
STXBP1	0	genome.wustl.edu	37	9	130438121	130438121	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	130438121	130438121	C	T	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	silent	c.1149	p.I383	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	tier1	-	-	88	0	0.00	69	19	21.59
PRR5L	0	genome.wustl.edu	37	11	36485195	36485195	+	RNA	DEL	A	A	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	11	36485195	36485195	A	-	DEL	PRR5L	ENST00000389693	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	PRR5L	HGNC	ENSG00000135362	tier1			15	0	0.00	16	5	23.81
KCNH3	0	genome.wustl.edu	37	12	49948322	49948322	+	Silent	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	49948322	49948322	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	silent	c.2121	p.G707	0.014	NULL	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	tier1	-	-	44	0	0.00	96	9	8.57
KCNH3	0	genome.wustl.edu	37	12	49948182	49948182	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	49948182	49948182	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.1981	p.D661N	0.478	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	tier1	-	-	69	0	0.00	147	19	11.45
GAREML	0	genome.wustl.edu	37	2	26410287	26410287	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	2	26410287	26410287	G	A	SNP	GAREML	ENST00000401533	human	ensembl	74_37	+1	known	missense	c.1786	p.A596T	0.002	NULL	superfamily_SAM/pointed	-	no_errors	GAREML	HGNC	ENSG00000157833	tier1	-	-	85	0	0.00	67	14	17.07
PRPF40B	0	genome.wustl.edu	37	12	50036712	50036712	+	Splice_Site	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	50036712	50036712	G	A	SNP	PRPF40B	ENST00000548825	human	ensembl	74_37	+1	known	splice_site	c.2119-1	e22-1	1.000	-	-	-	no_errors	PRPF40B	HGNC	ENSG00000110844	tier1	-	-	36	0	0.00	103	11	9.65
ANAPC5	0	genome.wustl.edu	37	12	121747544	121747544	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	121747544	121747544	C	T	SNP	ANAPC5	ENST00000261819	human	ensembl	74_37	-1	known	silent	c.2016	p.V672	1.000	NULL	smart_TPR_repeat	-	no_errors	ANAPC5	HGNC	ENSG00000089053	tier1	-	-	44	0	0.00	81	172	67.98
MYO5C	0	genome.wustl.edu	37	15	52571803	52571803	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	15	52571803	52571803	C	T	SNP	MYO5C	ENST00000261839	human	ensembl	74_37	-1	known	silent	c.207	p.E69	1.000	superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Dil_domain,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_Dilute,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO5C	HGNC	ENSG00000128833	tier1	-	-	40	0	0.00	35	4	10.26
SYK	0	genome.wustl.edu	37	9	93606231	93606231	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	93606231	93606231	C	T	SNP	SYK	ENST00000375746	human	ensembl	74_37	+1	known	silent	c.51	p.F17	0.814	pfam_SH2,smart_SH2,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,superfamily_Kinase-like_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_SYK/ZAP70,pfscan_SH2,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2	-	no_errors	SYK	HGNC	ENSG00000165025	tier1	rs200626943	-	34	0	0.00	30	7	18.92
CEL	0	genome.wustl.edu	37	9	135944447	135944447	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	135944447	135944447	G	A	SNP	CEL	ENST00000372080	human	ensembl	74_37	+1	known	missense	c.1096	p.D366N	0.998	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CEL	HGNC	ENSG00000170835	tier1	-	-	31	0	0.00	46	8	14.81
LPCAT2	0	genome.wustl.edu	37	16	55584939	55584939	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	16	55584939	55584939	A	-	DEL	LPCAT2	ENST00000262134	human	ensembl	74_37	+1	known	frame_shift_del	c.1140	p.I381fs	1.000	NULL	pfam_EF_hand_dom,pfam_Plipid/glycerol_acylTrfase,smart_Plipid/glycerol_acylTrfase,smart_EF_hand_dom,pfscan_EF_hand_dom,prints_Recoverin	-	no_errors	LPCAT2	HGNC	ENSG00000087253	tier1			72	0	0.00	100	15	13.04
RN7SL319P	0	genome.wustl.edu	37	15	76077689	76077690	+	RNA	INS	-	-	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	15	76077689	76077690	-	G	INS	RN7SL319P	ENST00000480656	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.981:0.985	-	-	-	no_errors	RN7SL319P	HGNC	ENSG00000241807	tier1			14	0	0.00	13	10	43.48
MT-CO2	0	genome.wustl.edu	37	MT	7850	7850	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	MT	7850	7850	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	missense	c.265	p.E89K	NULL	superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	tier1	-	-	319	0	0.00	833	97	10.43
POTEA	0	genome.wustl.edu	37	8	43159855	43159855	+	RNA	SNP	C	C	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	8	43159855	43159855	C	G	SNP	POTEA	ENST00000522175	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	POTEA	HGNC	ENSG00000188877	tier1	-	-	70	0	0.00	202	166	44.99
USP48	0	genome.wustl.edu	37	1	22073626	22073626	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	1	22073626	22073626	T	A	SNP	USP48	ENST00000308271	human	ensembl	74_37	-1	known	nonsense	c.925	p.K309*	1.000	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67	pfam_Peptidase_C19/C67,pfscan_Peptidase_C19/C67,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	tier1	-	-	42	0	0.00	29	5	14.71
SETD1B	0	genome.wustl.edu	37	12	122247621	122247621	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	122247621	122247621	C	T	SNP	SETD1B	ENST00000267197	human	ensembl	74_37	+1	known	missense	c.770	p.A257V	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1B	HGNC	ENSG00000139718	tier1	-	-	78	0	0.00	410	325	44.04
FAM186B	0	genome.wustl.edu	37	12	49992542	49992542	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	49992542	49992542	G	A	SNP	FAM186B	ENST00000257894	human	ensembl	74_37	-1	known	missense	c.2360	p.P787L	1.000	NULL	NULL	-	no_errors	FAM186B	HGNC	ENSG00000135436	tier1	-	-	28	0	0.00	52	7	11.86
IVL	0	genome.wustl.edu	37	1	152883175	152883175	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	1	152883175	152883175	A	T	SNP	IVL	ENST00000368764	human	ensembl	74_37	+1	known	missense	c.902	p.K301M	0.017	pfam_Involucrin_rpt	pfam_Involucrin_N,pfam_Involucrin_rpt	-	no_errors	IVL	HGNC	ENSG00000163207	tier1	-	-	55	0	0.00	71	29	29.00
SLC6A18	0	genome.wustl.edu	37	5	1238154	1238154	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	1238154	1238154	C	T	SNP	SLC6A18	ENST00000324642	human	ensembl	74_37	+1	known	silent	c.711	p.L237	0.000	pfam_Na/ntran_symport,pfscan_Na/ntran_symport	pfam_Na/ntran_symport,pfscan_Na/ntran_symport,prints_Na/ntran_symport,prints_Na/ntran_symport_orphan	-	no_errors	SLC6A18	HGNC	ENSG00000164363	tier1	-	-	58	0	0.00	139	162	53.82
C9orf96	0	genome.wustl.edu	37	9	136270458	136270458	+	Silent	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	136270458	136270458	G	A	SNP	C9orf96	ENST00000371957	human	ensembl	74_37	+1	known	silent	c.1956	p.V652	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	C9orf96	HGNC	ENSG00000198870	tier1	-	-	19	0	0.00	17	6	26.09
ENSG00000221244	0	genome.wustl.edu	37	5	1004311	1004314	+	RNA	DEL	GTGT	GTGT	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	GTGT	GTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	1004311	1004314	GTGT	-	DEL	ENSG00000221244	ENST00000408317	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.057:0.050:0.043:0.036	-	-	-	no_errors	AC116351.2	Clone_based_ensembl_gene	ENSG00000221244	tier1			32	0	0.00	63	9	12.50
CMSS1	0	genome.wustl.edu	37	3	99891167	99891167	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	3	99891167	99891167	C	T	SNP	CMSS1	ENST00000421999	human	ensembl	74_37	+1	known	missense	c.587	p.A196V	0.993	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	CMSS1	HGNC	ENSG00000184220	tier1	-	-	32	0	0.00	61	10	14.08
LOC440040	0	genome.wustl.edu	37	11	49598199	49598210	+	RNA	DEL	CTCTTCCTTCTG	CTCTTCCTTCTG	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	CTCTTCCTTCTG	CTCTTCCTTCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	11	49598199	49598210	CTCTTCCTTCTG	-	DEL	LOC440040	ENST00000527477	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006:0.002:0.026:0.005:0.020:0.025:0.013:0.243:0.771:0.857:0.990:0.998	-	-	-	no_errors	RP11-707M1.1	Clone_based_vega_gene	ENSG00000205035	tier1			NA	NA	NA	NA	NA	NA
PDE8B	0	genome.wustl.edu	37	5	76709035	76709035	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	76709035	76709035	C	T	SNP	PDE8B	ENST00000264917	human	ensembl	74_37	+1	known	silent	c.1812	p.I604	0.456	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_PDE8,pfam_Sig_transdc_resp-reg_receiver,pfam_PAS_fold,pfam_PAS_4,pfam_PAS_fold_3,superfamily_PAS,superfamily_CheY-like_superfamily,smart_PAS,smart_HD/PDEase_dom,pfscan_PAS,prints_PDEase,tigrfam_PAS	-	no_errors	PDE8B	HGNC	ENSG00000113231	tier1	-	-	55	0	0.00	73	20	21.51
METTL1	0	genome.wustl.edu	37	12	58163566	58163566	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	58163566	58163566	A	G	SNP	METTL1	ENST00000324871	human	ensembl	74_37	-1	known	missense	c.448	p.Y150H	0.286	pfam_tRNA_(Gua-N-7)_MeTrfase,tigrfam_tRNA_(Gua-N-7)_MeTrfase	pfam_tRNA_(Gua-N-7)_MeTrfase,tigrfam_tRNA_(Gua-N-7)_MeTrfase	-	no_errors	METTL1	HGNC	ENSG00000037897	tier1	-	-	54	0	0.00	273	44	13.88
TTC37	0	genome.wustl.edu	37	5	94803639	94803640	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	94803639	94803640	AG	-	DEL	TTC37	ENST00000358746	human	ensembl	74_37	-1	known	frame_shift_del	c.4551_4550	p.S1517fs	1.000:1.000	NULL	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC37	HGNC	ENSG00000198677	tier1			33	0	0.00	30	5	14.29
PHLDB2	0	genome.wustl.edu	37	3	111658466	111658466	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	3	111658466	111658466	G	T	SNP	PHLDB2	ENST00000393925	human	ensembl	74_37	+1	known	missense	c.2275	p.V759F	0.997	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB2	HGNC	ENSG00000144824	tier1	-	-	26	0	0.00	35	4	10.26
STXBP1	0	genome.wustl.edu	37	9	130438152	130438152	+	Silent	SNP	C	C	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	9	130438152	130438152	C	T	SNP	STXBP1	ENST00000373299	human	ensembl	74_37	+1	known	silent	c.1180	p.L394	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP1	HGNC	ENSG00000136854	tier1	-	-	80	0	0.00	64	17	20.99
PIK3R4	0	genome.wustl.edu	37	3	130398323	130398323	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	3	130398323	130398323	G	T	SNP	PIK3R4	ENST00000356763	human	ensembl	74_37	-1	known	missense	c.3913	p.Q1305K	1.000	superfamily_WD40_repeat_dom	pfam_Prot_kinase_dom,pfam_WD40_repeat,pfam_HEAT,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_WD40_repeat,pfscan_HEAT_type_2,pfscan_Prot_kinase_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	PIK3R4	HGNC	ENSG00000196455	tier1	-	-	11	0	0.00	15	5	25.00
FOXI1	0	genome.wustl.edu	37	5	169533511	169533511	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	5	169533511	169533511	G	C	SNP	FOXI1	ENST00000306268	human	ensembl	74_37	+1	known	missense	c.550	p.V184L	1.000	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXI1	HGNC	ENSG00000168269	tier1	-	-	73	0	0.00	136	29	17.58
ENSG00000215933	0	genome.wustl.edu	37	X	71372202	71372209	+	RNA	DEL	CGCGCGCA	CGCGCGCA	-			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	CGCGCGCA	CGCGCGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	X	71372202	71372209	CGCGCGCA	-	DEL	ENSG00000215933	ENST00000401114	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.015:0.009	-	-	-	no_errors	BX119917.1	Clone_based_ensembl_gene	ENSG00000215933	tier1			NA	NA	NA	NA	NA	NA
CCDC53	0	genome.wustl.edu	37	12	102419810	102419810	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LS-01A-11D-A21Q-09	TCGA-DX-A3LS-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	075fc96d-6742-4ef3-9369-482592ad3a2f	dc2e1f2d-585d-4dab-9bb2-aee31ee5b436	12	102419810	102419810	G	A	SNP	CCDC53	ENST00000240079	human	ensembl	74_37	-1	known	missense	c.442	p.P148S	1.000	pfam_WASH_CCDC53	pfam_WASH_CCDC53	-	no_errors	CCDC53	HGNC	ENSG00000120860	tier1	-	-	44	0	0.00	676	76	10.11
