Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LOC101927616	0	genome.wustl.edu	37	12	127808712	127808716	+	RNA	DEL	TTATT	TTATT	-			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	TTATT	TTATT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	127808712	127808716	TTATT	-	DEL	LOC101927616	ENST00000545739	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001:0.001:0.002:0.002	-	-	-	no_errors	RP11-955H22.3	Clone_based_vega_gene	ENSG00000256362	tier1			NA	NA	NA	NA	NA	NA
BTN2A3P	0	genome.wustl.edu	37	6	26422387	26422388	+	RNA	INS	-	-	CTTCCTCCTCCT			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	6	26422387	26422388	-	CTTCCTCCTCCT	INS	BTN2A3P	ENST00000465856	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.002	-	-	-	no_errors	BTN2A3P	HGNC	ENSG00000124549	tier1			NA	NA	NA	NA	NA	NA
PEX11B	0	genome.wustl.edu	37	1	145522894	145522894	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	1	145522894	145522894	A	G	SNP	PEX11B	ENST00000369306	human	ensembl	74_37	+1	known	missense	c.755	p.Y252C	0.992	NULL	pfam_PEX11	-	no_errors	PEX11B	HGNC	ENSG00000131779	tier1	-	-	28	0	0.00	17	17	50.00
WRN	0	genome.wustl.edu	37	8	30938397	30938397	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	8	30938397	30938397	T	G	SNP	WRN	ENST00000298139	human	ensembl	74_37	+1	known	missense	c.854	p.L285R	0.045	NULL	pfam_3'-5'_exonuclease_dom,pfam_Helicase_C,pfam_RQC_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HRDC_dom,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,superfamily_HRDC-like,smart_3'-5'_exonuclease_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_RQC_domain,smart_HRDC_dom,pfscan_HRDC_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,tigrfam_DNA_helicase_ATP-dep_RecQ	-	no_errors	WRN	HGNC	ENSG00000165392	tier1	-	-	41	0	0.00	27	24	47.06
KIF26A	0	genome.wustl.edu	37	14	104638995	104638995	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	14	104638995	104638995	C	A	SNP	KIF26A	ENST00000423312	human	ensembl	74_37	+1	known	missense	c.1410	p.H470Q	0.976	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	tier1	-	-	115	0	0.00	64	13	16.88
NRP2	0	genome.wustl.edu	37	2	206608046	206608046	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	2	206608046	206608046	C	T	SNP	NRP2	ENST00000360409	human	ensembl	74_37	+1	known	missense	c.1411	p.R471C	1.000	pirsf_Neuropilin,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pirsf_Neuropilin,pfam_CUB_dom,pfam_Coagulation_fac_5/8-C_type_dom,pfam_MAM_dom,pfam_Neuropilin1_C,superfamily_Galactose-bd-like,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_MAM_dom,prints_MAM_dom,pfscan_CUB_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_MAM_dom	-	no_errors	NRP2	HGNC	ENSG00000118257	tier1	-	-	86	0	0.00	69	15	17.86
CDKAL1	0	genome.wustl.edu	37	6	20781386	20781386	+	Silent	SNP	G	G	C			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	6	20781386	20781386	G	C	SNP	CDKAL1	ENST00000274695	human	ensembl	74_37	+1	known	silent	c.528	p.V176	1.000	tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	pfam_Methylthiotransferase_N,pfam_rSAM,pfam_TRAM_dom,smart_Elp3/MiaB/NifB,pfscan_TRAM_dom,tigrfam_MiaB-like_B,tigrfam_Methylthiotransferase	-	no_errors	CDKAL1	HGNC	ENSG00000145996	tier1	-	-	45	0	0.00	11	23	67.65
DDAH1	0	genome.wustl.edu	37	1	85787222	85787222	+	Silent	SNP	C	C	G			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	1	85787222	85787222	C	G	SNP	DDAH1	ENST00000284031	human	ensembl	74_37	-1	known	silent	c.771	p.L257	1.000	pfam_Amidino_trans	pfam_Amidino_trans	-	no_errors	DDAH1	HGNC	ENSG00000153904	tier1	-	-	67	0	0.00	48	10	17.24
HSD3B1	0	genome.wustl.edu	37	1	120056737	120056737	+	Silent	SNP	C	C	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	1	120056737	120056737	C	T	SNP	HSD3B1	ENST00000235547	human	ensembl	74_37	+1	known	silent	c.597	p.F199	0.006	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_PKS_KR,pfam_NmrA	-	no_errors	HSD3B1	HGNC	ENSG00000203857	tier1	-	-	64	0	0.00	32	20	37.74
MYRFL	0	genome.wustl.edu	37	12	70297595	70297595	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	70297595	70297595	G	C	SNP	MYRFL	ENST00000552032	human	ensembl	74_37	+1	putative	missense	c.1354	p.D452H	1.000	NULL	pfam_NDT80_DNA-bd_dom,superfamily_p53-like_TF_DNA-bd	-	no_errors	MYRFL	HGNC	ENSG00000166268	tier1	-	-	44	0	0.00	84	20	19.23
WWP2	0	genome.wustl.edu	37	16	69974022	69974022	+	RNA	SNP	G	G	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	16	69974022	69974022	G	T	SNP	WWP2	ENST00000544162	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WWP2	HGNC	ENSG00000198373	tier1	-	-	47	0	0.00	34	28	45.16
GREB1	0	genome.wustl.edu	37	2	11780503	11780503	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	2	11780503	11780503	C	T	SNP	GREB1	ENST00000234142	human	ensembl	74_37	+1	known	missense	c.5773	p.R1925W	1.000	NULL	superfamily_P-loop_NTPase	-	no_errors	GREB1	HGNC	ENSG00000196208	tier1	-	-	41	0	0.00	22	20	47.62
SIN3A	0	genome.wustl.edu	37	15	75722672	75722672	+	Silent	SNP	G	G	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	15	75722672	75722672	G	A	SNP	SIN3A	ENST00000360439	human	ensembl	74_37	-1	known	silent	c.45	p.A15	0.998	NULL	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	tier1	-	-	52	0	0.00	14	19	57.58
MIR620	0	genome.wustl.edu	37	12	116586415	116586416	+	RNA	DEL	TA	TA	-			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	116586415	116586416	TA	-	DEL	MIR620	ENST00000385232	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	MIR620	HGNC	ENSG00000207967	tier1			28	0	0.00	23	4	14.81
CD163	0	genome.wustl.edu	37	12	7633778	7633778	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	7633778	7633778	G	T	SNP	CD163	ENST00000359156	human	ensembl	74_37	-1	known	missense	c.3322	p.L1108M	0.997	NULL	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	CD163	HGNC	ENSG00000177575	tier1	-	-	49	0	0.00	21	3	12.50
OPRM1	0	genome.wustl.edu	37	6	154412167	154412167	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	6	154412167	154412167	G	A	SNP	OPRM1	ENST00000434900	human	ensembl	74_37	+1	known	missense	c.1003	p.A335T	1.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Mu_opioid_rcpt,prints_GPCR_Rhodpsn,prints_Opioid_rcpt,prints_Somatstn_rcpt,prints_Neuropept_B/W_rcpt,prints_NPY_rcpt	-	no_errors	OPRM1	HGNC	ENSG00000112038	tier1	-	-	68	0	0.00	29	14	32.56
PPHLN1	0	genome.wustl.edu	37	12	42835144	42835144	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	42835144	42835144	G	A	SNP	PPHLN1	ENST00000395568	human	ensembl	74_37	+1	known	missense	c.937	p.G313R	1.000	NULL	NULL	-	no_errors	PPHLN1	HGNC	ENSG00000134283	tier1	rs199841802	GMAF=0	111	0	0.00	82	14	14.58
DIP2B	0	genome.wustl.edu	37	12	51122461	51122461	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	51122461	51122461	G	A	SNP	DIP2B	ENST00000301180	human	ensembl	74_37	+1	known	missense	c.3641	p.S1214N	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2B	HGNC	ENSG00000066084	tier1	-	-	120	0	0.00	85	103	54.79
IL36B	0	genome.wustl.edu	37	2	113785508	113785508	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	2	113785508	113785508	G	T	SNP	IL36B	ENST00000327407	human	ensembl	74_37	-1	known	missense	c.446	p.T149N	0.032	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1	pfam_IL-1,superfamily_Cytokine_IL1-like,smart_IL-1,prints_IL-1,prints_IL-1_alpha/beta,prints_IL-1_beta	-	no_errors	IL36B	HGNC	ENSG00000136696	tier1	-	-	113	0	0.00	80	19	19.19
CHRNA9	0	genome.wustl.edu	37	4	40339262	40339262	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	4	40339262	40339262	G	T	SNP	CHRNA9	ENST00000310169	human	ensembl	74_37	+1	known	missense	c.246	p.W82C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA9	HGNC	ENSG00000174343	tier1	-	-	54	0	0.00	244	37	13.17
ENSG00000237452	0	genome.wustl.edu	37	19	46265047	46265048	+	In_Frame_Ins	INS	-	-	TCCAGC			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	19	46265047	46265048	-	TCCAGC	INS	ENSG00000237452	ENST00000457052	human	ensembl	74_37	+1	putative	in_frame_ins	c.1356_1357	p.456in_frame_insSS	0.000:0.004	NULL	pfam_HMG_box_dom,pfam_bHLH_dom,superfamily_HMG_box_dom,superfamily_bHLH_dom,smart_HMG_box_dom,pfscan_bHLH_dom,pfscan_HMG_box_dom	-	no_errors	AC074212.3	Clone_based_vega_gene	ENSG00000237452	tier1			NA	NA	NA	NA	NA	NA
SEC14L3	0	genome.wustl.edu	37	22	30857444	30857444	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	22	30857444	30857444	C	T	SNP	SEC14L3	ENST00000215812	human	ensembl	74_37	-1	known	missense	c.934	p.A312T	0.072	superfamily_GOLD,pfscan_GOLD	pfam_CRAL-TRIO_dom,pfam_CRAL/TRIO_N_dom,superfamily_CRAL-TRIO_dom,superfamily_GOLD,superfamily_CRAL/TRIO_N_dom,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_GOLD,prints_CRAL-bd_toc_tran	-	no_errors	SEC14L3	HGNC	ENSG00000100012	tier1	-	-	61	0	0.00	24	10	29.41
MARCH4	0	genome.wustl.edu	37	2	217234774	217234774	+	Silent	SNP	G	G	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	2	217234774	217234774	G	A	SNP	MARCH4	ENST00000273067	human	ensembl	74_37	-1	known	silent	c.210	p.P70	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH4	HGNC	ENSG00000144583	tier1	-	-	20	0	0.00	14	15	51.72
CNTNAP2	0	genome.wustl.edu	37	7	148113624	148113628	+	RNA	DEL	TAGTT	TAGTT	-			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	TAGTT	TAGTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	7	148113624	148113628	TAGTT	-	DEL	CNTNAP2	ENST00000463592	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001:0.002:0.001:0.000	-	-	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	tier1			NA	NA	NA	NA	NA	NA
MT-CO2	0	genome.wustl.edu	37	MT	7974	7975	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	MT	7974	7975	-	T	INS	MT-CO2	ENST00000361739	human	ensembl	74_37	+1	known	frame_shift_ins	c.389_390	p.G131fs	NULL	pfam_Cyt_c_oxidase_su2_C,superfamily_Cupredoxin,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	pfam_Cyt_c_oxidase_su2_C,pfam_Cyt_c_oxidase_su2_TM_dom,superfamily_Cupredoxin,superfamily_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_TM_dom,pfscan_Cyt_c_oxidase_su2_C,tigrfam_Cyt_c_oxidase_su2	-	no_errors	MT-CO2	HGNC	ENSG00000198712	tier1			143	0	0.00	141	41	22.53
OS9	0	genome.wustl.edu	37	12	58112180	58112180	+	Silent	SNP	G	G	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	58112180	58112180	G	A	SNP	OS9	ENST00000315970	human	ensembl	74_37	+1	known	silent	c.1386	p.R462	1.000	NULL	pfam_PRKCSH,superfamily_Man6P_isomerase_rcpt-bd_dom	-	no_errors	OS9	HGNC	ENSG00000135506	tier1	-	-	24	0	0.00	85	82	49.10
WIF1	0	genome.wustl.edu	37	12	65449811	65449811	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	65449811	65449811	G	A	SNP	WIF1	ENST00000286574	human	ensembl	74_37	-1	known	missense	c.922	p.P308S	1.000	pfscan_EG-like_dom	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076	tier1	-	-	49	0	0.00	21	23	52.27
EPHB2	0	genome.wustl.edu	37	1	23111560	23111560	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	1	23111560	23111560	G	A	SNP	EPHB2	ENST00000400191	human	ensembl	74_37	+1	known	missense	c.802	p.V268I	0.961	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Growth_fac_rcpt_N_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	tier1	-	-	96	0	0.00	9	36	80.00
GPR37	0	genome.wustl.edu	37	7	124404542	124404542	+	Silent	SNP	C	C	A			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	7	124404542	124404542	C	A	SNP	GPR37	ENST00000303921	human	ensembl	74_37	-1	known	silent	c.489	p.G163	0.019	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37	HGNC	ENSG00000170775	tier1	-	-	59	0	0.00	30	22	42.31
SYNM	0	genome.wustl.edu	37	15	99674046	99674047	+	RNA	INS	-	-	TTCTGTTATAGCCTAAG			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	15	99674046	99674047	-	TTCTGTTATAGCCTAAG	INS	SYNM	ENST00000558420	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	SYNM	HGNC	ENSG00000182253	tier1			NA	NA	NA	NA	NA	NA
FBXL4	0	genome.wustl.edu	37	6	99374398	99374398	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	6	99374398	99374398	G	T	SNP	FBXL4	ENST00000229971	human	ensembl	74_37	-1	known	missense	c.467	p.A156D	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom	-	no_errors	FBXL4	HGNC	ENSG00000112234	tier1	-	-	56	0	0.00	44	4	8.33
ARGLU1	0	genome.wustl.edu	37	13	107196174	107196174	+	RNA	DEL	A	A	-			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	13	107196174	107196174	A	-	DEL	ARGLU1	ENST00000472226	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ARGLU1	HGNC	ENSG00000134884	tier1			11	0	0.00	7	5	41.67
LINC00969	0	genome.wustl.edu	37	3	195412985	195412985	+	RNA	SNP	C	C	G			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	3	195412985	195412985	C	G	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086	tier1	rs74948728	-	20	0	0.00	17	8	32.00
CNPY2	0	genome.wustl.edu	37	12	56708671	56708671	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	56708671	56708671	G	C	SNP	CNPY2	ENST00000273308	human	ensembl	74_37	-1	known	missense	c.168	p.F56L	1.000	pfam_DUF3456,superfamily_Saposin-like,pfscan_SaposinB	pfam_DUF3456,superfamily_Saposin-like,pfscan_SaposinB	-	no_errors	CNPY2	HGNC	ENSG00000257727	tier1	-	-	73	0	0.00	561	82	12.75
NUTM2B	0	genome.wustl.edu	37	10	81465826	81465826	+	Silent	SNP	C	C	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	10	81465826	81465826	C	T	SNP	NUTM2B	ENST00000429828	human	ensembl	74_37	+1	known	silent	c.411	p.T137	0.000	NULL	NULL	-	no_errors	NUTM2B	HGNC	ENSG00000188199	tier1	-	-	44	0	0.00	24	4	14.29
ENSG00000215958	0	genome.wustl.edu	37	15	70077754	70077763	+	RNA	DEL	TGTGTGTGTG	TGTGTGTGTG	-			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	TGTGTGTGTG	TGTGTGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	15	70077754	70077763	TGTGTGTGTG	-	DEL	ENSG00000215958	ENST00000401139	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.145:0.176:0.181:0.185:0.189:0.192:0.194:0.195:0.195:0.195	-	-	-	no_errors	AC021818.1	Clone_based_ensembl_gene	ENSG00000215958	tier1			NA	NA	NA	NA	NA	NA
HECTD4	0	genome.wustl.edu	37	12	112601934	112601934	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	112601934	112601934	C	T	SNP	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	missense	c.12164	p.R4055Q	0.985	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064	tier1	-	-	77	0	0.00	35	30	46.15
FLG	0	genome.wustl.edu	37	1	152275633	152275633	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	1	152275633	152275633	G	T	SNP	FLG	ENST00000368799	human	ensembl	74_37	-1	known	missense	c.11729	p.A3910D	0.000	NULL	pfam_Filaggrin,pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG	HGNC	ENSG00000143631	tier1	-	-	120	0	0.00	54	43	44.33
HNRNPUL1	0	genome.wustl.edu	37	19	41808550	41808584	+	Frame_Shift_Del	DEL	GGGCACTTCCTTCCTCCTAGCCAACTTCACGTTGC	GGGCACTTCCTTCCTCCTAGCCAACTTCACGTTGC	-			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	GGGCACTTCCTTCCTCCTAGCCAACTTCACGTTGC	GGGCACTTCCTTCCTCCTAGCCAACTTCACGTTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	19	41808550	41808584	GGGCACTTCCTTCCTCCTAGCCAACTTCACGTTGC	-	DEL	HNRNPUL1	ENST00000392006	human	ensembl	74_37	+1	known	frame_shift_del	c.1708_1702	p.D582fs	0.003:0.001:0.000:0.000:0.001:0.026:0.025:0.008:0.002:0.003:0.008:0.026:0.157:0.181:0.241:0.267:0.693:0.762:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.997:0.003:0.743:0.991:0.988:1.000	NULL	pfam_SPRY_rcpt,pfam_SAP_dom,superfamily_ConA-like_lec_gl_sf,superfamily_P-loop_NTPase,smart_SAP_dom,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_dom	-	no_errors	HNRNPUL1	HGNC	ENSG00000105323	tier1			NA	NA	NA	NA	NA	NA
RGS2	0	genome.wustl.edu	37	1	192780338	192780339	+	RNA	DEL	AA	AA	-			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	1	192780338	192780339	AA	-	DEL	RGS2	ENST00000464302	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.034:0.025	-	-	-	no_errors	RGS2	HGNC	ENSG00000116741	tier1			8	0	0.00	12	5	29.41
KEL	0	genome.wustl.edu	37	7	142651354	142651354	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	7	142651354	142651354	G	C	SNP	KEL	ENST00000355265	human	ensembl	74_37	-1	known	missense	c.841	p.R281G	0.000	pfam_Peptidase_M13_N	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	KEL	HGNC	ENSG00000197993	tier1	-	-	58	0	0.00	43	8	15.69
LINC00969	0	genome.wustl.edu	37	3	195412992	195412992	+	RNA	SNP	A	A	G			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	3	195412992	195412992	A	G	SNP	LINC00969	ENST00000414625	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	LINC00969	HGNC	ENSG00000242086	tier1	rs78973672	-	17	0	0.00	12	5	29.41
METTL21B	0	genome.wustl.edu	37	12	58166903	58166903	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3LW-01A-21D-A21Q-09	TCGA-DX-A3LW-10A-01D-A21Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9d691fa3-5c32-4b98-85c4-f6e0fd4c37e0	9dd9bf7a-a5e2-41fc-8295-6d71a58014a6	12	58166903	58166903	C	T	SNP	METTL21B	ENST00000300209	human	ensembl	74_37	+1	known	missense	c.281	p.A94V	1.000	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL21B	HGNC	ENSG00000123427	tier1	-	-	105	0	0.00	554	104	15.71
