Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HHIP	0	genome.wustl.edu	37	4	145573925	145573925	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	4	145573925	145573925	T	C	SNP	HHIP	ENST00000296575	human	ensembl	74_37	+1	known	missense	c.448	p.Y150H	1.000	pfam_Folate_rcpt-like	pfam_Folate_rcpt-like,superfamily_Quinoprot_gluc/sorb_DH,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	HHIP	HGNC	ENSG00000164161	tier1	-	-	36	0	0.00	18	14	43.75
FZD2	0	genome.wustl.edu	37	17	42636675	42636675	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	42636675	42636675	G	C	SNP	FZD2	ENST00000315323	human	ensembl	74_37	+1	known	missense	c.1619	p.W540S	1.000	pfam_Frizzled,pfscan_GPCR_2-like,prints_Frizzled	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD2	HGNC	ENSG00000180340	tier1	-	-	78	0	0.00	103	24	18.90
LOC101930494	0	genome.wustl.edu	37	7	128263652	128263652	+	RNA	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	7	128263652	128263652	G	A	SNP	LOC101930494	ENST00000605862	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029	-	-	-	no_errors	RP11-274B21.1	Clone_based_vega_gene	ENSG00000242588	tier1	-	-	35	0	0.00	31	6	16.22
ENSG00000259185	0	genome.wustl.edu	37	15	52201131	52201131	+	RNA	DEL	T	T	-			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	15	52201131	52201131	T	-	DEL	ENSG00000259185	ENST00000559302	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-56B16.4	Clone_based_vega_gene	ENSG00000259185	tier1			17	0	0.00	20	5	20.00
KIF21A	0	genome.wustl.edu	37	12	39745740	39745740	+	Silent	SNP	T	T	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	39745740	39745740	T	C	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	silent	c.1512	p.R504	0.766	superfamily_ARM-type_fold	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116	tier1	-	-	36	0	0.00	27	22	44.90
DNM1P47	0	genome.wustl.edu	37	15	102299878	102299878	+	RNA	SNP	C	C	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	15	102299878	102299878	C	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	rs200606529	-	41	0	0.00	30	7	18.92
ADAMTSL3	0	genome.wustl.edu	37	15	84651157	84651157	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	15	84651157	84651157	C	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	missense	c.2777	p.P926L	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	tier1	-	-	44	0	0.00	44	6	12.00
RORB	0	genome.wustl.edu	37	9	77249620	77249620	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	9	77249620	77249620	G	A	SNP	RORB	ENST00000396204	human	ensembl	74_37	+1	known	missense	c.200	p.R67K	1.000	pfam_Znf_hrmn_rcpt,smart_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_ROR_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_ThyrH_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	RORB	HGNC	ENSG00000198963	tier1	-	-	51	0	0.00	28	18	39.13
ENSG00000221096	0	genome.wustl.edu	37	15	59443210	59443215	+	RNA	DEL	ACACAC	ACACAC	-			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	ACACAC	ACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	15	59443210	59443215	ACACAC	-	DEL	ENSG00000221096	ENST00000408169	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.007:0.003:0.001:0.000:0.000:0.001	-	-	-	no_errors	AC092757.1	Clone_based_ensembl_gene	ENSG00000221096	tier1			NA	NA	NA	NA	NA	NA
HECA	0	genome.wustl.edu	37	6	139487930	139487930	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	6	139487930	139487930	G	A	SNP	HECA	ENST00000367658	human	ensembl	74_37	+1	known	missense	c.781	p.G261S	0.928	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	HECA	HGNC	ENSG00000112406	tier1	-	-	21	0	0.00	8	11	57.89
GDAP2	0	genome.wustl.edu	37	1	118412824	118412824	+	RNA	SNP	C	C	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	1	118412824	118412824	C	G	SNP	GDAP2	ENST00000491626	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.967	-	-	-	no_errors	GDAP2	HGNC	ENSG00000196505	tier1	-	-	10	0	0.00	12	5	29.41
PCDHB7	0	genome.wustl.edu	37	5	140553993	140553993	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	5	140553993	140553993	C	T	SNP	PCDHB7	ENST00000231137	human	ensembl	74_37	+1	known	missense	c.1577	p.A526V	0.030	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	tier1	-	-	180	0	0.00	134	34	20.24
RAB6A	0	genome.wustl.edu	37	11	73441811	73441811	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	73441811	73441811	T	A	SNP	RAB6A	ENST00000310653	human	ensembl	74_37	-1	known	missense	c.128	p.Q43L	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB6A	HGNC	ENSG00000175582	tier1	-	-	41	0	0.00	25	25	50.00
KRTAP16-1	0	genome.wustl.edu	37	17	39465423	39465423	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	39465423	39465423	G	T	SNP	KRTAP16-1	ENST00000391352	human	ensembl	74_37	-1	known	missense	c.83	p.P28H	0.559	NULL	NULL	-	no_errors	KRTAP16-1	HGNC	ENSG00000212657	tier1	-	-	57	0	0.00	87	10	10.31
SLC30A6	0	genome.wustl.edu	37	2	32417472	32417472	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	2	32417472	32417472	A	C	SNP	SLC30A6	ENST00000282587	human	ensembl	74_37	+1	known	missense	c.352	p.I118L	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A6	HGNC	ENSG00000152683	tier1	-	-	60	0	0.00	25	23	47.92
KRTAP4-9	0	genome.wustl.edu	37	17	39261912	39261912	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	39261912	39261912	G	C	SNP	KRTAP4-9	ENST00000391415	human	ensembl	74_37	+1	known	missense	c.272	p.R91T	0.436	pfam_Keratin-assoc	pfam_Keratin-assoc	-	no_errors	KRTAP4-9	HGNC	ENSG00000212722	tier1	-	-	251	0	0.00	196	99	33.45
FKBP10	0	genome.wustl.edu	37	17	39974736	39974736	+	Silent	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	39974736	39974736	G	A	SNP	FKBP10	ENST00000321562	human	ensembl	74_37	+1	known	silent	c.684	p.K228	1.000	pfam_PPIase_FKBP_dom,pfscan_PPIase_FKBP_dom	pfam_PPIase_FKBP_dom,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP10	HGNC	ENSG00000141756	tier1	-	-	45	0	0.00	61	13	17.57
AQP3	0	genome.wustl.edu	37	9	33443824	33443824	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	9	33443824	33443824	T	C	SNP	AQP3	ENST00000297991	human	ensembl	74_37	-1	known	missense	c.175	p.I59V	1.000	pfam_MIP,superfamily_Aquaporin-like,tigrfam_MIP	pfam_MIP,superfamily_Aquaporin-like,prints_Aquaporin_3,prints_MIP,tigrfam_MIP	-	no_errors	AQP3	HGNC	ENSG00000165272	tier1	-	-	56	0	0.00	29	12	29.27
ST6GALNAC4	0	genome.wustl.edu	37	9	130678404	130678404	+	RNA	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	9	130678404	130678404	G	A	SNP	ST6GALNAC4	ENST00000479747	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ST6GALNAC4	HGNC	ENSG00000136840	tier1	-	-	9	0	0.00	39	15	27.78
HEPHL1	0	genome.wustl.edu	37	11	93819316	93819316	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	93819316	93819316	C	G	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	missense	c.2041	p.H681D	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	tier1	-	-	80	0	0.00	27	48	64.00
KCNA5	0	genome.wustl.edu	37	12	5154464	5154464	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	5154464	5154464	G	T	SNP	KCNA5	ENST00000252321	human	ensembl	74_37	+1	known	missense	c.1151	p.G384V	0.088	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.5,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA5	HGNC	ENSG00000130037	tier1	-	-	48	0	0.00	44	13	22.81
APLP1	0	genome.wustl.edu	37	19	36365487	36365487	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	19	36365487	36365487	G	A	SNP	APLP1	ENST00000221891	human	ensembl	74_37	+1	known	missense	c.1138	p.V380I	1.000	superfamily_Amyloid_glyco_E2_domain	pfam_Amyloid_glyco_heparin-bd,pfam_APP_amyloid_C,superfamily_Amyloid_glyco_E2_domain,superfamily_Amyloid_glyco_heparin-bd,superfamily_Amyloid_glyco_Cu-bd,smart_Amyloid_glyco_extra,prints_Amyloid_glyco	-	no_errors	APLP1	HGNC	ENSG00000105290	tier1	-	-	35	0	0.00	29	11	27.50
IL17RC	0	genome.wustl.edu	37	3	9972614	9972614	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	3	9972614	9972614	C	A	SNP	IL17RC	ENST00000295981	human	ensembl	74_37	+1	known	nonsense	c.1587	p.C529*	1.000	NULL	pfam_SEFIR	-	no_errors	IL17RC	HGNC	ENSG00000163702	tier1	-	-	51	0	0.00	30	10	25.00
PHLDB1	0	genome.wustl.edu	37	11	118513072	118513072	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	118513072	118513072	C	G	SNP	PHLDB1	ENST00000361417	human	ensembl	74_37	+1	known	missense	c.2837	p.S946C	0.966	NULL	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	tier1	-	-	80	0	0.00	23	35	60.34
LZTS1	0	genome.wustl.edu	37	8	20110991	20110991	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	8	20110991	20110991	G	C	SNP	LZTS1	ENST00000265801	human	ensembl	74_37	-1	known	missense	c.451	p.P151A	0.999	NULL	NULL	-	no_errors	LZTS1	HGNC	ENSG00000061337	tier1	-	-	95	0	0.00	58	40	40.82
SLC25A3	0	genome.wustl.edu	37	12	98993839	98993839	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	98993839	98993839	C	T	SNP	SLC25A3	ENST00000228318	human	ensembl	74_37	+1	known	missense	c.751	p.P251S	1.000	superfamily_Mt_carrier_dom	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A3	HGNC	ENSG00000075415	tier1	-	-	53	0	0.00	44	270	85.99
PPARA	0	genome.wustl.edu	37	22	46611070	46611070	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	22	46611070	46611070	A	G	SNP	PPARA	ENST00000262735	human	ensembl	74_37	+1	known	missense	c.209	p.D70G	1.000	prints_1Cnucl_rcpt_A	pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_1Cnucl_rcpt_A,prints_1Cnucl_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	PPARA	HGNC	ENSG00000186951	tier1	-	-	78	0	0.00	21	18	46.15
CELA1	0	genome.wustl.edu	37	12	51740415	51740416	+	Frame_Shift_Del	DEL	AC	AC	-			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	51740415	51740416	AC	-	DEL	CELA1	ENST00000293636	human	ensembl	74_37	-1	known	frame_shift_del	c.8_7	p.V3fs	0.534:0.591	NULL	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	CELA1	HGNC	ENSG00000139610	tier1			38	0	0.00	38	10	20.83
GRIK3	0	genome.wustl.edu	37	1	37271806	37271806	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	1	37271806	37271806	A	G	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	missense	c.2213	p.M738T	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	tier1	-	-	121	0	0.00	63	41	39.05
MYH3	0	genome.wustl.edu	37	17	10537376	10537376	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	10537376	10537376	C	G	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.4480	p.D1494H	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063	tier1	-	-	70	0	0.00	13	32	71.11
ADAMTS15	0	genome.wustl.edu	37	11	130319823	130319823	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	130319823	130319823	C	T	SNP	ADAMTS15	ENST00000299164	human	ensembl	74_37	+1	known	nonsense	c.955	p.Q319*	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS,prints_Pept_M12B_ADAM-TS8	-	no_errors	ADAMTS15	HGNC	ENSG00000166106	tier1	-	-	53	0	0.00	11	20	64.52
SVEP1	0	genome.wustl.edu	37	9	113170710	113170710	+	Silent	SNP	A	A	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	9	113170710	113170710	A	T	SNP	SVEP1	ENST00000401783	human	ensembl	74_37	-1	known	silent	c.7170	p.G2390	0.928	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,pfam_EG-like_dom,pfam_Tyr-kin_ephrin_A/B_rcpt-like,pfam_Hyalin,pfam_VWF_A,pfam_Pentaxin,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Sushi_SCR_CCP,superfamily_Growth_fac_rcpt_N_dom,smart_VWF_A,smart_Sushi_SCR_CCP,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Pentaxin,pfscan_EG-like_dom,pfscan_Hyalin,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,prints_Pentaxin	-	no_errors	SVEP1	HGNC	ENSG00000165124	tier1	-	-	23	0	0.00	28	43	60.56
TLE2	0	genome.wustl.edu	37	19	3019293	3019293	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	19	3019293	3019293	C	T	SNP	TLE2	ENST00000262953	human	ensembl	74_37	-1	known	missense	c.538	p.E180K	0.679	NULL	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Groucho_enhance,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	TLE2	HGNC	ENSG00000065717	tier1	-	-	68	0	0.00	51	22	29.73
TRPV3	0	genome.wustl.edu	37	17	3436043	3436043	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	3436043	3436043	G	C	SNP	TRPV3	ENST00000301365	human	ensembl	74_37	-1	known	missense	c.973	p.L325V	0.999	superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel	-	no_errors	TRPV3	HGNC	ENSG00000167723	tier1	-	-	71	0	0.00	36	20	35.71
PCLO	0	genome.wustl.edu	37	7	82581204	82581204	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	7	82581204	82581204	G	T	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.9065	p.A3022E	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	42	0	0.00	20	3	13.04
DNASE2B	0	genome.wustl.edu	37	1	84878060	84878060	+	Silent	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	1	84878060	84878060	C	T	SNP	DNASE2B	ENST00000370665	human	ensembl	74_37	+1	known	silent	c.576	p.N192	0.030	pfam_DNase_II	pfam_DNase_II	-	no_errors	DNASE2B	HGNC	ENSG00000137976	tier1	-	-	31	0	0.00	20	17	45.95
DNAJB3	0	genome.wustl.edu	37	2	234652338	234652338	+	RNA	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	2	234652338	234652338	G	A	SNP	DNAJB3	ENST00000449667	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNAJB3	HGNC	ENSG00000227802	tier1	rs184388078	GMAF=0.0005	105	0	0.00	13	32	68.09
CALN1	0	genome.wustl.edu	37	7	71571178	71571178	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	7	71571178	71571178	C	T	SNP	CALN1	ENST00000395275	human	ensembl	74_37	-1	known	missense	c.346	p.E116K	1.000	pfscan_EF_hand_dom	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CALN1	HGNC	ENSG00000183166	tier1	-	-	44	0	0.00	29	18	38.30
RIMBP2	0	genome.wustl.edu	37	12	130919312	130919312	+	Silent	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	130919312	130919312	G	A	SNP	RIMBP2	ENST00000261655	human	ensembl	74_37	-1	known	silent	c.2169	p.D723	0.781	NULL	pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_Fibronectin_type3,smart_SH3_domain,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	RIMBP2	HGNC	ENSG00000060709	tier1	-	-	74	0	0.00	36	5	12.20
DCC	0	genome.wustl.edu	37	18	50592510	50592510	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	18	50592510	50592510	G	T	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.1235	p.S412I	1.000	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323	tier1	-	-	89	0	0.00	30	10	25.00
KPRP	0	genome.wustl.edu	37	1	152732093	152732093	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	1	152732093	152732093	G	A	SNP	KPRP	ENST00000368773	human	ensembl	74_37	+1	known	missense	c.29	p.R10H	0.849	NULL	NULL	-	no_errors	KPRP	HGNC	ENSG00000203786	tier1	-	-	89	0	0.00	52	8	12.70
COG5	0	genome.wustl.edu	37	7	107002523	107002523	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	7	107002523	107002523	C	G	SNP	COG5	ENST00000297135	human	ensembl	74_37	-1	known	missense	c.1074	p.K358N	1.000	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597	tier1	-	-	63	0	0.00	21	17	44.74
MYH3	0	genome.wustl.edu	37	17	10533632	10533632	+	Silent	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	10533632	10533632	C	T	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	silent	c.5430	p.K1810	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063	tier1	-	-	139	0	0.00	39	43	52.44
IGSF3	0	genome.wustl.edu	37	1	117122058	117122058	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	1	117122058	117122058	G	A	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	missense	c.3350	p.T1117M	0.983	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061	tier1	-	-	54	0	0.00	20	23	53.49
ENSG00000269604	0	genome.wustl.edu	37	19	4794948	4794949	+	RNA	INS	-	-	AACCTCAC			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	19	4794948	4794949	-	AACCTCAC	INS	ENSG00000269604	ENST00000601192	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC005523.2	Clone_based_vega_gene	ENSG00000269604	tier1			NA	NA	NA	NA	NA	NA
CDX4	0	genome.wustl.edu	37	X	72667297	72667297	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	X	72667297	72667297	G	A	SNP	CDX4	ENST00000373514	human	ensembl	74_37	+1	known	missense	c.208	p.G70R	0.880	pfam_Caudal_activation_dom	pfam_Caudal_activation_dom,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	CDX4	HGNC	ENSG00000131264	tier1	-	-	32	0	0.00	39	58	59.79
POM121L2	0	genome.wustl.edu	37	6	27279851	27279851	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	6	27279851	27279851	C	A	SNP	POM121L2	ENST00000444565	human	ensembl	74_37	-1	known	missense	c.99	p.Q33H	0.004	NULL	NULL	-	no_errors	POM121L2	HGNC	ENSG00000158553	tier1	-	-	131	0	0.00	41	22	34.92
ZUFSP	0	genome.wustl.edu	37	6	116973247	116973247	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	6	116973247	116973247	C	T	SNP	ZUFSP	ENST00000368576	human	ensembl	74_37	-1	known	missense	c.1070	p.G357D	1.000	pfam_Peptidase_C78_UfSP1/2	pfam_Peptidase_C78_UfSP1/2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZUFSP	HGNC	ENSG00000153975	tier1	-	-	47	0	0.00	8	14	63.64
PEG3	0	genome.wustl.edu	37	19	57334999	57334999	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	19	57334999	57334999	C	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.443	p.R148I	0.000	smart_Tscrpt_reg_SCAN	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	tier1	-	-	151	0	0.00	101	10	9.01
ZFC3H1	0	genome.wustl.edu	37	12	72026677	72026677	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	72026677	72026677	C	A	SNP	ZFC3H1	ENST00000378743	human	ensembl	74_37	-1	known	missense	c.2806	p.D936Y	0.998	NULL	pfam_Putative_zinc-finger_domain,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	ZFC3H1	HGNC	ENSG00000133858	tier1	-	-	25	0	0.00	79	13	14.13
UTP23	0	genome.wustl.edu	37	8	117783742	117783742	+	Silent	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	8	117783742	117783742	C	T	SNP	UTP23	ENST00000309822	human	ensembl	74_37	+1	known	silent	c.411	p.L137	0.985	pfam_Fcf1/Utp23	pfam_Fcf1/Utp23	-	no_errors	UTP23	HGNC	ENSG00000147679	tier1	-	-	38	0	0.00	41	23	35.94
SLC41A2	0	genome.wustl.edu	37	12	105260245	105260245	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	105260245	105260245	G	-	DEL	SLC41A2	ENST00000258538	human	ensembl	74_37	-1	known	frame_shift_del	c.1140	p.W381fs	0.998	NULL	pfam_SLC41_membr_dom	-	no_errors	SLC41A2	HGNC	ENSG00000136052	tier1			66	0	0.00	77	61	44.20
HEPHL1	0	genome.wustl.edu	37	11	93819353	93819353	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	93819353	93819353	C	T	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	missense	c.2078	p.A693V	0.998	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	tier1	-	-	68	0	0.00	24	49	67.12
CEACAM4	0	genome.wustl.edu	37	19	42133313	42133313	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	19	42133313	42133313	C	T	SNP	CEACAM4	ENST00000221954	human	ensembl	74_37	-1	known	missense	c.19	p.A7T	0.000	NULL	pfam_Ig_V-set,pfscan_Ig-like_dom	-	no_errors	CEACAM4	HGNC	ENSG00000105352	tier1	rs112325334	-	53	0	0.00	18	19	51.35
DNAH2	0	genome.wustl.edu	37	17	7640498	7640498	+	Silent	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	7640498	7640498	G	A	SNP	DNAH2	ENST00000389173	human	ensembl	74_37	+1	known	silent	c.1092	p.L364	0.942	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH2	HGNC	ENSG00000183914	tier1	-	-	45	0	0.00	21	21	50.00
HEPHL1	0	genome.wustl.edu	37	11	93819313	93819313	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	93819313	93819313	C	T	SNP	HEPHL1	ENST00000315765	human	ensembl	74_37	+1	known	missense	c.2038	p.P680S	1.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPHL1	HGNC	ENSG00000181333	tier1	-	-	77	0	0.00	30	46	60.53
MYH3	0	genome.wustl.edu	37	17	10539137	10539137	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	10539137	10539137	C	G	SNP	MYH3	ENST00000226209	human	ensembl	74_37	-1	known	missense	c.3890	p.S1297T	0.888	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH3	HGNC	ENSG00000109063	tier1	-	-	62	0	0.00	15	17	53.12
C6orf165	0	genome.wustl.edu	37	6	88125496	88125496	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	6	88125496	88125496	G	C	SNP	C6orf165	ENST00000369562	human	ensembl	74_37	+1	known	missense	c.376	p.E126Q	1.000	NULL	pfam_DUF3508	-	no_errors	C6ORF165	Uniprot_gn	ENSG00000272514	tier1	-	-	49	0	0.00	7	20	74.07
SCN1A	0	genome.wustl.edu	37	2	166912969	166912969	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	2	166912969	166912969	C	T	SNP	SCN1A	ENST00000303395	human	ensembl	74_37	-1	known	missense	c.425	p.C142Y	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	tier1	-	-	46	0	0.00	7	13	65.00
MAP4K4	0	genome.wustl.edu	37	2	102493602	102493602	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	2	102493602	102493602	A	G	SNP	MAP4K4	ENST00000324219	human	ensembl	74_37	+1	known	missense	c.3187	p.I1063V	1.000	pfam_Citron,smart_Citron	pfam_Prot_kinase_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K4	HGNC	ENSG00000071054	tier1	-	-	95	0	0.00	54	13	19.40
SHANK2	0	genome.wustl.edu	37	11	70331623	70331623	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	70331623	70331623	C	A	SNP	SHANK2	ENST00000338508	human	ensembl	74_37	-1	known	missense	c.4778	p.G1593V	0.038	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain	-	no_errors	SHANK2	HGNC	ENSG00000162105	tier1	-	-	27	0	0.00	13	8	38.10
LOC101930494	0	genome.wustl.edu	37	7	128263709	128263709	+	RNA	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	7	128263709	128263709	G	A	SNP	LOC101930494	ENST00000605862	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.212	-	-	-	no_errors	RP11-274B21.1	Clone_based_vega_gene	ENSG00000242588	tier1	-	-	55	0	0.00	58	8	12.12
TRIM49C	0	genome.wustl.edu	37	11	89768577	89768577	+	Silent	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	89768577	89768577	C	T	SNP	TRIM49C	ENST00000448984	human	ensembl	74_37	+1	known	silent	c.198	p.T66	0.001	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,superfamily_Lambda_DNA-bd_dom,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM49C	HGNC	ENSG00000204449	tier1	rs201628038	-	65	0	0.00	6	5	45.45
ZNF683	0	genome.wustl.edu	37	1	26691499	26691499	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	1	26691499	26691499	A	T	SNP	ZNF683	ENST00000403843	human	ensembl	74_37	-1	known	missense	c.538	p.S180T	0.043	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF683	HGNC	ENSG00000176083	tier1	-	-	65	0	0.00	33	19	36.54
CEP290	0	genome.wustl.edu	37	12	88508231	88508231	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	88508231	88508231	G	A	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.2024	p.S675F	0.983	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	tier1	-	-	50	0	0.00	146	182	55.49
MAP3K5	0	genome.wustl.edu	37	6	137015432	137015432	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	6	137015432	137015432	C	T	SNP	MAP3K5	ENST00000359015	human	ensembl	74_37	-1	known	missense	c.1099	p.D367N	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K5	HGNC	ENSG00000197442	tier1	-	-	45	0	0.00	32	8	20.00
APBA3	0	genome.wustl.edu	37	19	3759868	3759868	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	19	3759868	3759868	A	C	SNP	APBA3	ENST00000316757	human	ensembl	74_37	-1	known	missense	c.395	p.L132R	0.000	NULL	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA3	HGNC	ENSG00000011132	tier1	-	-	57	0	0.00	31	19	38.00
COL7A1	0	genome.wustl.edu	37	3	48603732	48603732	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	3	48603732	48603732	C	-	DEL	COL7A1	ENST00000328333	human	ensembl	74_37	-1	known	frame_shift_del	c.8375	p.G2792fs	0.596	NULL	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	tier1			37	0	0.00	35	22	38.60
PDHX	0	genome.wustl.edu	37	11	35006133	35006133	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	35006133	35006133	A	G	SNP	PDHX	ENST00000227868	human	ensembl	74_37	+1	known	missense	c.1040	p.N347S	1.000	pfam_2-oxoacid_DH_actylTfrase	pfam_2-oxoacid_DH_actylTfrase,pfam_Biotin_lipoyl,pfam_E3-bd,superfamily_Single_hybrid_motif,superfamily_E3-bd,pfscan_Biotin_lipoyl	-	no_errors	PDHX	HGNC	ENSG00000110435	tier1	-	-	45	0	0.00	16	10	38.46
KRT18P55	0	genome.wustl.edu	37	17	26603750	26603750	+	RNA	SNP	T	T	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	26603750	26603750	T	A	SNP	KRT18P55	ENST00000577198	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KRT18P55	HGNC	ENSG00000265480	tier1	-	-	25	0	0.00	17	6	26.09
RNF212	0	genome.wustl.edu	37	4	1087327	1087328	+	In_Frame_Ins	INS	-	-	CTGCCCAGGCTGGAGCCAGCC			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	4	1087327	1087328	-	CTGCCCAGGCTGGAGCCAGCC	INS	RNF212	ENST00000333673	human	ensembl	74_37	-1	known	in_frame_ins	c.722_721	p.S241in_frame_insWLAPAWAA	0.085:0.000	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	tier1			NA	NA	NA	NA	NA	NA
CEP290	0	genome.wustl.edu	37	12	88508256	88508256	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	88508256	88508256	G	A	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	missense	c.1999	p.P667S	0.909	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	tier1	-	-	56	0	0.00	166	216	56.54
PRMT2	0	genome.wustl.edu	37	21	48084213	48084214	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	21	48084213	48084214	-	AA	INS	PRMT2	ENST00000355680	human	ensembl	74_37	+1	known	frame_shift_ins	c.1276_1277	p.V428fs	0.999:0.995	NULL	pfam_SH3_domain,pfam_Arg_MeTrfase,pfam_SH3_2,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_tRNA_Trfase_Trm5/Tyw2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PRMT2	HGNC	ENSG00000160310	tier1			50	0	0.00	50	6	10.71
RAI1	0	genome.wustl.edu	37	17	17697099	17697100	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	17697099	17697100	GC	-	DEL	RAI1	ENST00000353383	human	ensembl	74_37	+1	known	frame_shift_del	c.837_838	p.Q280fs	0.891:0.907	NULL	smart_Znf_PHD	-	no_errors	RAI1	HGNC	ENSG00000108557	tier1			20	0	0.00	8	15	65.22
COG5	0	genome.wustl.edu	37	7	107002489	107002489	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	7	107002489	107002489	C	-	DEL	COG5	ENST00000297135	human	ensembl	74_37	-1	known	frame_shift_del	c.1108	p.E370fs	1.000	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597	tier1			59	0	0.00	22	15	40.54
ENSG00000254420	0	genome.wustl.edu	37	11	78154810	78154811	+	RNA	INS	-	-	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	11	78154810	78154811	-	A	INS	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.247:0.000	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420	tier1			24	0	0.00	23	2	8.00
MUC20	0	genome.wustl.edu	37	3	195452960	195452960	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	3	195452960	195452960	G	A	SNP	MUC20	ENST00000447234	human	ensembl	74_37	+1	known	missense	c.1486	p.V496I	0.003	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	tier1	rs4093817	-	63	0	0.00	58	6	9.38
DNAH2	0	genome.wustl.edu	37	17	7642332	7642332	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	17	7642332	7642332	G	C	SNP	DNAH2	ENST00000082259	human	ensembl	74_37	+1	known	missense	c.1416	p.E472D	1.000	pfam_Dynein_heavy_dom-1	pfam_Dynein_heavy_dom-1	-	no_errors	DNAH2	HGNC	ENSG00000183914	tier1	-	-	75	0	0.00	41	27	39.71
HERC2P4	0	genome.wustl.edu	37	16	32186906	32186906	+	RNA	SNP	A	A	G			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	16	32186906	32186906	A	G	SNP	HERC2P4	ENST00000566591	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P4	HGNC	ENSG00000230267	tier1	-	-	40	0	0.00	33	8	19.51
CCNL1	0	genome.wustl.edu	37	3	156867129	156867129	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	3	156867129	156867129	A	C	SNP	CCNL1	ENST00000295926	human	ensembl	74_37	-1	known	missense	c.1179	p.S393R	1.000	pirsf_Cyclin_L	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_L	-	no_errors	CCNL1	HGNC	ENSG00000163660	tier1	-	-	68	0	0.00	25	19	43.18
SCN5A	0	genome.wustl.edu	37	3	38601888	38601888	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	3	38601888	38601888	G	A	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.3995	p.P1332L	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	tier1	rs199473225	-	45	0	0.00	41	7	14.58
COG5	0	genome.wustl.edu	37	7	107002492	107002492	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	7	107002492	107002492	C	-	DEL	COG5	ENST00000297135	human	ensembl	74_37	-1	known	frame_shift_del	c.1105	p.E369fs	1.000	NULL	pfam_Cog5	-	no_errors	COG5	HGNC	ENSG00000164597	tier1			58	0	0.00	22	15	40.54
AQR	0	genome.wustl.edu	37	15	35189162	35189162	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	15	35189162	35189162	G	A	SNP	AQR	ENST00000156471	human	ensembl	74_37	-1	known	missense	c.2396	p.T799M	1.000	superfamily_P-loop_NTPase	superfamily_P-loop_NTPase	-	no_errors	AQR	HGNC	ENSG00000021776	tier1	-	-	22	0	0.00	11	9	45.00
CEP290	0	genome.wustl.edu	37	12	88508221	88508221	+	Silent	SNP	G	G	A			TCGA-DX-A3M1-01A-11D-A228-09	TCGA-DX-A3M1-10A-01D-A22A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	72f0a49a-aec8-47e5-846a-956c4da1507c	d732488f-aa89-4ee1-8915-c6ba1c5a5c44	12	88508221	88508221	G	A	SNP	CEP290	ENST00000309041	human	ensembl	74_37	-1	known	silent	c.2034	p.I678	0.962	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	tier1	-	-	49	0	0.00	137	172	55.66
