Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PRELID1P1	0	genome.wustl.edu	37	6	126964903	126964903	+	RNA	SNP	G	G	A			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	6	126964903	126964903	G	A	SNP	PRELID1P1	ENST00000567272	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PRELID1P1	HGNC	ENSG00000217325	tier1	-	-	50	0	0.00	52	13	20.00
RDH16	0	genome.wustl.edu	37	12	57346713	57346713	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	12	57346713	57346713	C	T	SNP	RDH16	ENST00000398138	human	ensembl	74_37	-1	known	missense	c.634	p.A212T	0.000	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH16	HGNC	ENSG00000139547	tier1	-	-	23	0	0.00	24	10	29.41
RNA5-8SP6	0	genome.wustl.edu	37	Y	10037863	10037863	+	RNA	DEL	C	C	-			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	Y	10037863	10037863	C	-	DEL	RNA5-8SP6	ENST00000515896	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RNA5-8SP6	HGNC	ENSG00000251705	tier1			40	0	0.00	48	8	14.29
LOC101927648	0	genome.wustl.edu	37	1	143355622	143355622	+	RNA	SNP	G	G	T			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	1	143355622	143355622	G	T	SNP	LOC101927648	ENST00000423249	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-435B5.4	Clone_based_vega_gene	ENSG00000185044	tier1	rs200345431	-	24	0	0.00	13	6	31.58
ENSG00000221704	0	genome.wustl.edu	37	2	236480576	236480577	+	RNA	INS	-	-	TGTGTGTGTGTG			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	2	236480576	236480577	-	TGTGTGTGTGTG	INS	ENSG00000221704	ENST00000408777	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.083:0.055	-	-	-	no_errors	AC012305.1	Clone_based_ensembl_gene	ENSG00000221704	tier1			NA	NA	NA	NA	NA	NA
ENSG00000221672	0	genome.wustl.edu	37	22	47243848	47243855	+	RNA	DEL	GTGTGCGC	GTGTGCGC	-			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	GTGTGCGC	GTGTGCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	22	47243848	47243855	GTGTGCGC	-	DEL	ENSG00000221672	ENST00000408745	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.003:0.002:0.002:0.003:0.004:0.001:0.001:0.001	-	-	-	no_errors	Z97351.1	Clone_based_ensembl_gene	ENSG00000221672	tier1			NA	NA	NA	NA	NA	NA
ENSG00000215933	0	genome.wustl.edu	37	X	71372202	71372209	+	RNA	DEL	CGCGCGCA	CGCGCGCA	-			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	CGCGCGCA	CGCGCGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	X	71372202	71372209	CGCGCGCA	-	DEL	ENSG00000215933	ENST00000401114	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.001:0.015:0.009	-	-	-	no_errors	BX119917.1	Clone_based_ensembl_gene	ENSG00000215933	tier1			NA	NA	NA	NA	NA	NA
CDC27	0	genome.wustl.edu	37	17	45234327	45234327	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	17	45234327	45234327	C	T	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.794	p.G265D	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	tier1	rs7350889	-	27	0	0.00	41	5	10.87
CROCCP2	0	genome.wustl.edu	37	1	16945227	16945227	+	RNA	SNP	G	G	T			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	1	16945227	16945227	G	T	SNP	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	tier1	rs9728628	-	13	0	0.00	15	4	21.05
POTEM	0	genome.wustl.edu	37	14	20012850	20012850	+	Silent	SNP	A	A	T			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	14	20012850	20012850	A	T	SNP	POTEM	ENST00000547722	human	ensembl	74_37	-1	known	silent	c.906	p.P302	0.030	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537	tier1	rs201036322	-	12	0	0.00	11	6	35.29
SMC6	0	genome.wustl.edu	37	2	17927101	17927101	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	2	17927101	17927101	G	A	SNP	SMC6	ENST00000381272	human	ensembl	74_37	-1	known	missense	c.113	p.T38I	0.998	NULL	superfamily_P-loop_NTPase	-	no_errors	SMC6	HGNC	ENSG00000163029	tier1	-	-	44	0	0.00	37	4	9.76
FIBCD1	0	genome.wustl.edu	37	9	133779553	133779553	+	Silent	SNP	G	G	A			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	9	133779553	133779553	G	A	SNP	FIBCD1	ENST00000372338	human	ensembl	74_37	-1	known	silent	c.1284	p.H428	1.000	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	pfam_Fibrinogen_a/b/g_C_dom,superfamily_Fibrinogen_a/b/g_C_dom,smart_Fibrinogen_a/b/g_C_dom	-	no_errors	FIBCD1	HGNC	ENSG00000130720	tier1	-	-	46	0	0.00	23	4	14.81
C10orf12	0	genome.wustl.edu	37	10	98743522	98743522	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	10	98743522	98743522	G	T	SNP	C10orf12	ENST00000286067	human	ensembl	74_37	+1	known	missense	c.2375	p.C792F	1.000	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	tier1	-	-	40	0	0.00	28	4	12.50
SLC44A4	0	genome.wustl.edu	37	6	31832357	31832357	+	RNA	DEL	A	A	-			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	6	31832357	31832357	A	-	DEL	SLC44A4	ENST00000487680	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.055	-	-	-	no_errors	SLC44A4	HGNC	ENSG00000204385	tier1			9	0	0.00	8	3	27.27
ENSG00000214797	0	genome.wustl.edu	37	11	59038010	59038011	+	RNA	INS	-	-	A			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	11	59038010	59038011	-	A	INS	ENSG00000214797	ENST00000399003	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.000	-	-	-	no_errors	RP11-1036E20.9	Clone_based_vega_gene	ENSG00000214797	tier1			13	0	0.00	15	2	11.76
CDC27	0	genome.wustl.edu	37	17	45234397	45234397	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U6-01A-11D-A29N-09	TCGA-DX-A3U6-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	db650eff-4e2c-4ce3-9124-7697b6e03359	7536cf00-aed9-4045-94e7-e562e7ec6b34	17	45234397	45234397	G	A	SNP	CDC27	ENST00000531206	human	ensembl	74_37	-1	known	missense	c.724	p.P242S	1.000	NULL	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CDC27	HGNC	ENSG00000004897	tier1	rs7350908	-	39	0	0.00	44	4	8.33
