Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LEO1	0	genome.wustl.edu	37	15	52239560	52239560	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	15	52239560	52239560	C	G	SNP	LEO1	ENST00000299601	human	ensembl	74_37	-1	known	missense	c.1825	p.D609H	1.000	pfam_Leo1	pfam_Leo1	-	no_errors	LEO1	HGNC	ENSG00000166477	tier1	-	-	40	0	0.00	49	13	20.97
CXADRP3	0	genome.wustl.edu	37	18	14479052	14479052	+	RNA	SNP	A	A	G			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	18	14479052	14479052	A	G	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766	tier1	-	-	35	0	0.00	19	6	24.00
HIST1H4C	0	genome.wustl.edu	37	6	26104378	26104378	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	6	26104378	26104378	G	C	SNP	HIST1H4C	ENST00000377803	human	ensembl	74_37	+1	known	missense	c.203	p.R68P	1.000	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	pfam_Histone_core_D,pfam_TAF_TATA-bd,superfamily_Histone-fold,smart_Histone_H4,smart_TAF_TATA-bd,prints_Histone_H4	-	no_errors	HIST1H4C	HGNC	ENSG00000197061	tier1	-	-	43	0	0.00	30	7	18.92
PLCE1	0	genome.wustl.edu	37	10	96022444	96022444	+	Silent	SNP	C	C	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	10	96022444	96022444	C	T	SNP	PLCE1	ENST00000260766	human	ensembl	74_37	+1	known	silent	c.4008	p.C1336	1.000	pfam_PLipase_C_EF-hand-like	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_dom,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,smart_Ras-assoc,pfscan_C2_dom,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC	ENSG00000138193	tier1	-	-	48	0	0.00	53	32	37.65
ITGAL	0	genome.wustl.edu	37	16	30490513	30490513	+	Silent	SNP	G	G	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	16	30490513	30490513	G	T	SNP	ITGAL	ENST00000356798	human	ensembl	74_37	+1	known	silent	c.429	p.G143	0.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,pfam_Integrin_alpha_C_CS,smart_Int_alpha_beta-p,smart_VWF_A,prints_Integrin_alpha,pfscan_VWF_A	-	no_errors	ITGAL	HGNC	ENSG00000005844	tier1	-	-	49	0	0.00	48	16	25.00
UGCG	0	genome.wustl.edu	37	9	114677047	114677051	+	RNA	DEL	TTTTG	TTTTG	-			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	TTTTG	TTTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	9	114677047	114677051	TTTTG	-	DEL	UGCG	ENST00000489355	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002:0.000:0.000:0.000	-	-	-	no_errors	UGCG	HGNC	ENSG00000148154	tier1			NA	NA	NA	NA	NA	NA
PCDHGA9	0	genome.wustl.edu	37	5	140784397	140784397	+	Silent	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	5	140784397	140784397	G	A	SNP	PCDHGA9	ENST00000573521	human	ensembl	74_37	+1	known	silent	c.1878	p.V626	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	tier1	-	-	110	0	0.00	95	20	17.39
LRBA	0	genome.wustl.edu	37	4	151849733	151849733	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	4	151849733	151849733	A	G	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.484	p.Y162H	1.000	superfamily_ARM-type_fold	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	tier1	-	-	24	0	0.00	27	5	15.62
NCAM1-AS1	0	genome.wustl.edu	37	11	113144349	113144349	+	RNA	SNP	G	G	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	11	113144349	113144349	G	C	SNP	NCAM1-AS1	ENST00000526229	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NCAM1-AS1	HGNC	ENSG00000227487	tier1	-	-	24	0	0.00	27	5	15.62
MCC	0	genome.wustl.edu	37	5	112389545	112389545	+	Silent	SNP	C	C	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	5	112389545	112389545	C	T	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	silent	c.1755	p.L585	1.000	NULL	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	tier1	-	-	45	0	0.00	41	22	34.92
PRLHR	0	genome.wustl.edu	37	10	120354681	120354681	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	10	120354681	120354681	C	T	SNP	PRLHR	ENST00000239032	human	ensembl	74_37	-1	known	missense	c.76	p.A26T	0.014	prints_Prolrel_pep_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Prolrel_pep_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	PRLHR	HGNC	ENSG00000119973	tier1	-	-	58	0	0.00	56	11	16.18
MICA	0	genome.wustl.edu	37	6	31380161	31380161	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	6	31380161	31380161	G	-	DEL	MICA	ENST00000449934	human	ensembl	74_37	+1	known	frame_shift_del	c.952	p.G318fs	0.000	NULL	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	MICA	HGNC	ENSG00000204520	tier1			27	0	0.00	30	7	18.92
RNASEL	0	genome.wustl.edu	37	1	182549124	182549124	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	1	182549124	182549124	T	C	SNP	RNASEL	ENST00000539397	human	ensembl	74_37	-1	known	missense	c.1924	p.R642G	0.107	NULL	pfam_Ankyrin_rpt,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_KEN_dom,pfam_LipoPS_kinase,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	RNASEL	HGNC	ENSG00000135828	tier1	-	-	93	0	0.00	73	20	21.51
RNASEL	0	genome.wustl.edu	37	1	182544665	182544665	+	Silent	SNP	A	A	G			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	1	182544665	182544665	A	G	SNP	RNASEL	ENST00000367559	human	ensembl	74_37	-1	known	silent	c.2088	p.F696	1.000	pfam_KEN_dom,smart_PUG-dom	pfam_Ankyrin_rpt,pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Ankyrin_rpt-contain_dom,superfamily_Kinase-like_dom,smart_Ankyrin_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_PUG-dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Prot_kinase_dom,prints_Ankyrin_rpt	-	no_errors	RNASEL	HGNC	ENSG00000135828	tier1	-	-	88	0	0.00	69	16	18.82
BBS9	0	genome.wustl.edu	37	7	33397493	33397493	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	7	33397493	33397493	T	G	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.1579	p.F527V	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	tier1	-	-	31	0	0.00	22	3	12.00
LIG4	0	genome.wustl.edu	37	13	108862125	108862125	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	13	108862125	108862125	A	G	SNP	LIG4	ENST00000356922	human	ensembl	74_37	-1	known	missense	c.1492	p.S498P	0.644	pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,tigrfam_DNA_ligase_ATP-dep	pfam_DNA_ligase_ATP-dep_cent,pfam_DNA_ligase_ATP-dep_N,pfam_DNA_ligase_IV,pfam_BRCT_dom,pfam_DNA_ligase_ATP-dep_C,superfamily_NA-bd_OB-fold,superfamily_BRCT_dom,superfamily_DNA_ligase_ATP-dep_N,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_DNA_ligase_ATP-dep_cent,tigrfam_DNA_ligase_ATP-dep	-	no_errors	LIG4	HGNC	ENSG00000174405	tier1	-	-	27	0	0.00	27	4	12.90
PIEZO2	0	genome.wustl.edu	37	18	10773521	10773521	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	18	10773521	10773521	G	T	SNP	PIEZO2	ENST00000582913	human	ensembl	74_37	-1	known	missense	c.2641	p.L881I	0.000	NULL	NULL	-	no_errors	PIEZO2	HGNC	ENSG00000154864	tier1	-	-	18	0	0.00	22	5	18.52
PLXDC1	0	genome.wustl.edu	37	17	37226190	37226190	+	Silent	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	17	37226190	37226190	G	A	SNP	PLXDC1	ENST00000315392	human	ensembl	74_37	-1	known	silent	c.1302	p.V434	0.938	NULL	pfam_Plexin_repeat,superfamily_Plexin-like_fold	-	no_errors	PLXDC1	HGNC	ENSG00000161381	tier1	-	-	50	0	0.00	37	8	17.78
GPR158	0	genome.wustl.edu	37	10	25890212	25890212	+	RNA	SNP	T	T	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	10	25890212	25890212	T	C	SNP	GPR158	ENST00000490549	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	GPR158	HGNC	ENSG00000151025	tier1	-	-	50	0	0.00	54	29	34.94
HHLA3	0	genome.wustl.edu	37	1	70820566	70820566	+	RNA	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	1	70820566	70820566	G	A	SNP	HHLA3	ENST00000486110	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	HHLA3	HGNC	ENSG00000197568	tier1	rs191179772	GMAF=0.0005	27	0	0.00	22	6	21.43
SHISA2	0	genome.wustl.edu	37	13	26621170	26621170	+	Silent	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	13	26621170	26621170	G	A	SNP	SHISA2	ENST00000319420	human	ensembl	74_37	-1	known	silent	c.369	p.S123	0.001	NULL	NULL	-	no_errors	SHISA2	HGNC	ENSG00000180730	tier1	rs139266835	-	22	0	0.00	15	6	28.57
WNK1	0	genome.wustl.edu	37	12	970296	970297	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	12	970296	970297	-	A	INS	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	frame_shift_ins	c.1738_1739	p.K584fs	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	tier1			21	0	0.00	22	3	12.00
SIPA1L1	0	genome.wustl.edu	37	14	72055964	72055964	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	14	72055964	72055964	G	A	SNP	SIPA1L1	ENST00000555818	human	ensembl	74_37	+1	known	missense	c.1375	p.G459R	1.000	NULL	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L1	HGNC	ENSG00000197555	tier1	-	-	34	0	0.00	25	11	30.56
GUCY1A3	0	genome.wustl.edu	37	4	156643228	156643228	+	Silent	SNP	C	C	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	4	156643228	156643228	C	T	SNP	GUCY1A3	ENST00000296518	human	ensembl	74_37	+1	known	silent	c.1755	p.G585	0.985	pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116	tier1	-	-	70	0	0.00	60	13	17.81
KIAA1109	0	genome.wustl.edu	37	4	123245583	123245583	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	4	123245583	123245583	C	A	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.10796	p.A3599D	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	tier1	-	-	31	0	0.00	44	4	8.33
ZNF705G	0	genome.wustl.edu	37	8	7215694	7215694	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	8	7215694	7215694	A	G	SNP	ZNF705G	ENST00000400078	human	ensembl	74_37	-1	known	missense	c.707	p.V236A	0.871	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF705G	HGNC	ENSG00000215372	tier1	rs9693671	-	62	0	0.00	73	7	8.75
ENSG00000251273	0	genome.wustl.edu	37	5	25190664	25190664	+	RNA	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	5	25190664	25190664	G	A	SNP	ENSG00000251273	ENST00000507600	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	RP11-549K20.1	Clone_based_vega_gene	ENSG00000251273	tier1	-	-	43	0	0.00	35	6	14.63
ZNF271	0	genome.wustl.edu	37	18	32888075	32888075	+	RNA	DEL	A	A	-			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	18	32888075	32888075	A	-	DEL	ZNF271	ENST00000399070	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	ZNF271	HGNC	ENSG00000257267	tier1			29	0	0.00	28	3	9.68
GPR88	0	genome.wustl.edu	37	1	101004644	101004644	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	1	101004644	101004644	T	-	DEL	GPR88	ENST00000315033	human	ensembl	74_37	+1	known	frame_shift_del	c.122	p.L41fs	0.996	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR88	HGNC	ENSG00000181656	tier1			40	0	0.00	33	4	10.81
HSD3B2	0	genome.wustl.edu	37	1	119964751	119964751	+	Silent	SNP	G	G	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	1	119964751	119964751	G	T	SNP	HSD3B2	ENST00000369416	human	ensembl	74_37	+1	known	silent	c.627	p.G209	0.020	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_dTDP_dehydrorham_reduct	pfam_3Beta_OHSteriod_DH/Estase,pfam_Epimerase_deHydtase,pfam_Male_sterile_NAD-bd,pfam_Polysac_CapD-like,pfam_DH_sc/Rdtase_SDR,pfam_dTDP_dehydrorham_reduct,pfam_NmrA,pfam_PKS_KR	-	no_errors	HSD3B2	HGNC	ENSG00000203859	tier1	-	-	64	0	0.00	58	12	17.14
CAMSAP2	0	genome.wustl.edu	37	1	200817855	200817855	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	1	200817855	200817855	G	T	SNP	CAMSAP2	ENST00000236925	human	ensembl	74_37	+1	known	missense	c.1991	p.R664L	0.071	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP2	HGNC	ENSG00000118200	tier1	-	-	33	0	0.00	20	3	13.04
OR10G7	0	genome.wustl.edu	37	11	123909182	123909182	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	11	123909182	123909182	T	A	SNP	OR10G7	ENST00000330487	human	ensembl	74_37	-1	known	missense	c.527	p.Y176F	0.824	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G7	HGNC	ENSG00000182634	tier1	-	-	157	0	0.00	129	44	25.43
NSMAF	0	genome.wustl.edu	37	8	59548025	59548025	+	Splice_Site	SNP	A	A	G			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	8	59548025	59548025	A	G	SNP	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	splice_site	c.321+2	e3+2	1.000	-	-	-	no_errors	NSMAF	HGNC	ENSG00000035681	tier1	-	-	35	0	0.00	41	10	19.61
GAS2L1	0	genome.wustl.edu	37	22	29708008	29708008	+	Silent	SNP	A	A	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	22	29708008	29708008	A	C	SNP	GAS2L1	ENST00000403764	human	ensembl	74_37	+1	known	silent	c.1567	p.R523	1.000	NULL	pfam_GAS2_dom,pfam_CH-domain,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_GAS2_dom,pfscan_CH-domain	-	no_errors	GAS2L1	HGNC	ENSG00000185340	tier1	-	-	46	0	0.00	39	5	11.36
ENSG00000222032	0	genome.wustl.edu	37	2	238341757	238341757	+	RNA	SNP	G	G	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	2	238341757	238341757	G	C	SNP	ENSG00000222032	ENST00000409910	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.975	-	-	-	no_errors	AC112721.2	Clone_based_vega_gene	ENSG00000222032	tier1	-	-	71	0	0.00	59	14	19.18
ENSG00000206195	0	genome.wustl.edu	37	22	16151010	16151010	+	RNA	SNP	T	T	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	22	16151010	16151010	T	C	SNP	ENSG00000206195	ENST00000413768	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.448	-	-	-	no_errors	AP000525.9	Clone_based_vega_gene	ENSG00000206195	tier1	-	-	11	0	0.00	6	5	45.45
CSMD1	0	genome.wustl.edu	37	8	3245037	3245037	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	8	3245037	3245037	G	C	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.2764	p.H922D	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	tier1	-	-	33	0	0.00	63	6	8.70
BCLAF1	0	genome.wustl.edu	37	6	136582194	136582195	+	RNA	INS	-	-	AAA			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	6	136582194	136582195	-	AAA	INS	BCLAF1	ENST00000529917	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.920:0.995	-	-	-	no_errors	BCLAF1	HGNC	ENSG00000029363	tier1			35	0	0.00	37	7	15.91
ENSG00000234277	0	genome.wustl.edu	37	1	227618623	227618623	+	RNA	SNP	C	C	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	1	227618623	227618623	C	T	SNP	ENSG00000234277	ENST00000445817	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CTD-2090I13.1	Clone_based_vega_gene	ENSG00000234277	tier1	-	-	24	0	0.00	11	4	26.67
CCDC11	0	genome.wustl.edu	37	18	47778111	47778111	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	18	47778111	47778111	G	A	SNP	CCDC11	ENST00000398545	human	ensembl	74_37	-1	known	nonsense	c.517	p.Q173*	0.017	NULL	NULL	-	no_errors	CCDC11	HGNC	ENSG00000172361	tier1	-	-	29	0	0.00	18	7	28.00
PGM5	0	genome.wustl.edu	37	9	70993134	70993134	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	9	70993134	70993134	G	C	SNP	PGM5	ENST00000396396	human	ensembl	74_37	+1	known	missense	c.281	p.G94A	1.000	pfam_A-D-PHexomutase_a/b/a-I,superfamily_A-D-PHexomutase_a/b/a-I/II/III	pfam_A-D-PHexomutase_a/b/a-I,pfam_A-D-PHexomutase_a/b/a-III,pfam_A-D-PHexomutase_a/b/a-II,superfamily_A-D-PHexomutase_a/b/a-I/II/III,prints_Alpha-D-phosphohexomutase_SF	-	no_errors	PGM5	HGNC	ENSG00000154330	tier1	-	-	62	0	0.00	43	14	23.73
IQCA1	0	genome.wustl.edu	37	2	237247013	237247013	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	2	237247013	237247013	G	A	SNP	IQCA1	ENST00000409907	human	ensembl	74_37	-1	known	missense	c.1969	p.R657C	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCA1	HGNC	ENSG00000132321	tier1	rs186626813	GMAF=0.0005	41	0	0.00	43	5	10.42
QRICH2	0	genome.wustl.edu	37	17	74283966	74283966	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	17	74283966	74283966	G	A	SNP	QRICH2	ENST00000262765	human	ensembl	74_37	-1	known	nonsense	c.3313	p.Q1105*	0.008	NULL	NULL	-	no_errors	QRICH2	HGNC	ENSG00000129646	tier1	-	-	67	0	0.00	49	13	20.97
CCNC	0	genome.wustl.edu	37	6	100006296	100006296	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	6	100006296	100006296	A	-	DEL	CCNC	ENST00000482541	human	ensembl	74_37	-1	putative	frame_shift_del	c.423	p.F141fs	0.007	superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNC	HGNC	ENSG00000112237	tier1			21	0	0.00	28	5	15.15
TRIM11	0	genome.wustl.edu	37	1	228582509	228582509	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	1	228582509	228582509	G	A	SNP	TRIM11	ENST00000284551	human	ensembl	74_37	-1	known	missense	c.1304	p.S435L	0.966	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM11	HGNC	ENSG00000154370	tier1	-	-	23	0	0.00	32	8	20.00
PRKCA	0	genome.wustl.edu	37	17	64770113	64770113	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	17	64770113	64770113	T	-	DEL	PRKCA	ENST00000413366	human	ensembl	74_37	+1	known	frame_shift_del	c.1533	p.Y512fs	0.955	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCA	HGNC	ENSG00000154229	tier1			62	0	0.00	53	11	17.19
RAPGEF1	0	genome.wustl.edu	37	9	134463181	134463181	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	9	134463181	134463181	C	T	SNP	RAPGEF1	ENST00000372190	human	ensembl	74_37	-1	known	missense	c.2671	p.E891K	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF1	HGNC	ENSG00000107263	tier1	-	-	37	0	0.00	25	13	34.21
ERBB4	0	genome.wustl.edu	37	2	212522509	212522509	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	2	212522509	212522509	G	A	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.1916	p.T639M	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,smart_Furin_repeat	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	tier1	-	-	58	0	0.00	67	14	17.28
ATP10A	0	genome.wustl.edu	37	15	25940132	25940132	+	Silent	SNP	G	G	A			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	15	25940132	25940132	G	A	SNP	ATP10A	ENST00000356865	human	ensembl	74_37	-1	known	silent	c.2922	p.I974	0.113	superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10A	HGNC	ENSG00000206190	tier1	-	-	53	0	0.00	56	8	12.50
C9orf78	0	genome.wustl.edu	37	9	132596001	132596001	+	RNA	DEL	A	A	-			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	9	132596001	132596001	A	-	DEL	C9orf78	ENST00000461762	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.115	-	-	-	no_errors	C9orf78	HGNC	ENSG00000136819	tier1			23	0	0.00	20	2	9.09
KIF15	0	genome.wustl.edu	37	3	44816813	44816813	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	3	44816813	44816813	G	C	SNP	KIF15	ENST00000326047	human	ensembl	74_37	+1	known	missense	c.130	p.D44H	1.000	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF15	HGNC	ENSG00000163808	tier1	-	-	29	0	0.00	33	7	17.50
GPSM1	0	genome.wustl.edu	37	9	139252558	139252558	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	9	139252558	139252558	G	C	SNP	GPSM1	ENST00000440944	human	ensembl	74_37	+1	known	missense	c.1914	p.Q638H	1.000	pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif	pfam_GoLoco_motif,pfam_TPR_1,smart_TPR_repeat,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	GPSM1	HGNC	ENSG00000160360	tier1	-	-	65	0	0.00	38	18	32.14
ICAM4	0	genome.wustl.edu	37	19	10397718	10397719	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	19	10397718	10397719	-	T	INS	ICAM4	ENST00000340992	human	ensembl	74_37	+1	known	frame_shift_ins	c.30_31	p.L12fs	0.002:0.004	NULL	pfam_ICAM_N	-	no_errors	ICAM4	HGNC	ENSG00000105371	tier1			23	0	0.00	12	2	14.29
PTPN11	0	genome.wustl.edu	37	12	112915797	112915797	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	12	112915797	112915797	C	T	SNP	PTPN11	ENST00000351677	human	ensembl	74_37	+1	known	missense	c.1070	p.T357M	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_SH2,smart_SH2,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-6/11,pfscan_SH2,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_SH2	-	no_errors	PTPN11	HGNC	ENSG00000179295	tier1	-	-	42	0	0.00	26	11	29.73
ENSG00000272769	0	genome.wustl.edu	37	2	133103682	133103687	+	RNA	DEL	CATTTT	CATTTT	-			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	CATTTT	CATTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	2	133103682	133103687	CATTTT	-	DEL	ENSG00000272769	ENST00000608279	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.117:0.123:0.125:0.127:0.125:0.120	-	-	-	no_errors	RP11-725P16.2	Clone_based_vega_gene	ENSG00000272769	tier1			NA	NA	NA	NA	NA	NA
DNAJC15	0	genome.wustl.edu	37	13	43659903	43659903	+	Splice_Site	SNP	G	G	T			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	13	43659903	43659903	G	T	SNP	DNAJC15	ENST00000379221	human	ensembl	74_37	+1	known	splice_site	c.312-1	e5-1	1.000	-	-	-	no_errors	DNAJC15	HGNC	ENSG00000120675	tier1	-	-	17	0	0.00	13	3	18.75
PCDHB14	0	genome.wustl.edu	37	5	140603414	140603414	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	5	140603414	140603414	C	G	SNP	PCDHB14	ENST00000239449	human	ensembl	74_37	+1	known	missense	c.337	p.P113A	1.000	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB14	HGNC	ENSG00000120327	tier1	-	-	55	0	0.00	76	9	10.59
PPP2R2B	0	genome.wustl.edu	37	5	146258290	146258291	+	RNA	INS	-	-	GCTGCTGCT			TCGA-DX-A3U8-01A-11D-A29N-09	TCGA-DX-A3U8-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	729229fe-92b9-439b-acd2-b49159116a41	de98db7b-81ee-4500-ab0a-80894271d467	5	146258290	146258291	-	GCTGCTGCT	INS	PPP2R2B	ENST00000530902	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.975:0.996	-	-	-	no_errors	PPP2R2B	HGNC	ENSG00000156475	tier1			NA	NA	NA	NA	NA	NA
