Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LRP1B	0	genome.wustl.edu	37	2	141298623	141298623	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	2	141298623	141298623	A	T	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	missense	c.7432	p.L2478M	1.000	smart_EG-like_dom	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	68	0	0.00	41	13	24.07
RN7SL319P	0	genome.wustl.edu	37	15	76077689	76077690	+	RNA	INS	-	-	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	15	76077689	76077690	-	G	INS	RN7SL319P	ENST00000480656	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.981:0.985	-	-	-	no_errors	RN7SL319P	HGNC	ENSG00000241807	tier1			41	0	0.00	58	9	13.43
DCHS2	0	genome.wustl.edu	37	4	155244445	155244445	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	155244445	155244445	C	A	SNP	DCHS2	ENST00000339452	human	ensembl	74_37	-1	known	missense	c.4055	p.G1352V	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	48	0	0.00	28	20	41.67
ENSG00000216020	0	genome.wustl.edu	37	3	191693744	191693749	+	RNA	DEL	GTGTGT	GTGTGT	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	GTGTGT	GTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	3	191693744	191693749	GTGTGT	-	DEL	ENSG00000216020	ENST00000401201	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AC026320.1	Clone_based_ensembl_gene	ENSG00000216020	tier1			NA	NA	NA	NA	NA	NA
ZNF180	0	genome.wustl.edu	37	19	44981660	44981660	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	19	44981660	44981660	A	C	SNP	ZNF180	ENST00000221327	human	ensembl	74_37	-1	known	missense	c.1038	p.N346K	0.534	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF180	HGNC	ENSG00000167384	tier1	-	-	44	0	0.00	47	12	20.34
IL10RA	0	genome.wustl.edu	37	11	117864124	117864124	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	117864124	117864124	C	T	SNP	IL10RA	ENST00000227752	human	ensembl	74_37	+1	known	missense	c.536	p.T179M	0.006	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL10RA	HGNC	ENSG00000110324	tier1	-	-	26	0	0.00	7	16	69.57
OTOP1	0	genome.wustl.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	CCACAGCAG	CCACAGCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	4228274	4228282	CCACAGCAG	-	DEL	OTOP1	ENST00000296358	human	ensembl	74_37	-1	known	in_frame_del	c.318_310	p.LLW104in_frame_del	1.000:1.000:1.000:0.995:0.999:0.998:0.998:1.000:1.000	NULL	pfam_Otopetrin	-	no_errors	OTOP1	HGNC	ENSG00000163982	tier1			NA	NA	NA	NA	NA	NA
COL6A4P1	0	genome.wustl.edu	37	3	15219382	15219382	+	RNA	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	3	15219382	15219382	C	T	SNP	COL6A4P1	ENST00000446690	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	COL6A4P1	HGNC	ENSG00000230524	tier1	-	-	42	0	0.00	32	16	33.33
TTYH1	0	genome.wustl.edu	37	19	54940506	54940506	+	Silent	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	19	54940506	54940506	G	A	SNP	TTYH1	ENST00000376531	human	ensembl	74_37	+1	known	silent	c.756	p.L252	1.000	pfam_Tweety	pfam_Tweety	-	no_errors	TTYH1	HGNC	ENSG00000167614	tier1	-	-	113	1	0.88	85	56	39.44
TESK2	0	genome.wustl.edu	37	1	45809610	45809610	+	RNA	DEL	A	A	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	45809610	45809610	A	-	DEL	TESK2	ENST00000486676	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	TESK2	HGNC	ENSG00000070759	tier1			19	0	0.00	44	4	8.33
CTTN	0	genome.wustl.edu	37	11	70277327	70277327	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	70277327	70277327	C	A	SNP	CTTN	ENST00000301843	human	ensembl	74_37	+1	known	missense	c.1207	p.P403T	0.007	superfamily_SH3_domain,prints_p67phox	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	CTTN	HGNC	ENSG00000085733	tier1	-	-	42	0	0.00	44	4	8.33
CLEC18B	0	genome.wustl.edu	37	16	74446949	74446949	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	16	74446949	74446949	G	T	SNP	CLEC18B	ENST00000339953	human	ensembl	74_37	-1	known	missense	c.662	p.A221E	0.729	NULL	pfam_CAP_domain,pfam_C-type_lectin,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EG-like_dom,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18B	HGNC	ENSG00000140839	tier1	-	-	122	0	0.00	76	13	14.61
ANP32AP1	0	genome.wustl.edu	37	15	35530356	35530357	+	RNA	INS	-	-	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	15	35530356	35530357	-	T	INS	ANP32AP1	ENST00000560832	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.997:0.996	-	-	-	no_errors	ANP32AP1	HGNC	ENSG00000259516	tier1			27	0	0.00	31	3	8.82
KCNK10	0	genome.wustl.edu	37	14	88652381	88652381	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	14	88652381	88652381	A	G	SNP	KCNK10	ENST00000312350	human	ensembl	74_37	-1	known	missense	c.1130	p.I377T	1.000	prints_2pore_dom_K_chnl_TREK	pfam_2pore_dom_K_chnl_dom,prints_2pore_dom_K_chnl_TREK,prints_2pore_dom_K_chnl,prints_2pore_dom_K_chnl_TRAAK,prints_2pore_dom_K_chnl_TASK	-	no_errors	KCNK10	HGNC	ENSG00000100433	tier1	-	-	49	0	0.00	51	16	23.88
LOC400743	0	genome.wustl.edu	37	1	17520942	17520943	+	RNA	DEL	TT	TT	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	17520942	17520943	TT	-	DEL	LOC400743	ENST00000412427	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.032:0.027	-	-	-	no_errors	RP11-380J14.1	Clone_based_vega_gene	ENSG00000204362	tier1			107	0	0.00	99	12	10.81
ARF1	0	genome.wustl.edu	37	1	228286501	228286501	+	RNA	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	228286501	228286501	C	T	SNP	ARF1	ENST00000477821	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	ARF1	HGNC	ENSG00000143761	tier1	-	-	73	0	0.00	40	31	43.66
SRBD1	0	genome.wustl.edu	37	2	45620241	45620241	+	Silent	SNP	C	C	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	2	45620241	45620241	C	A	SNP	SRBD1	ENST00000263736	human	ensembl	74_37	-1	known	silent	c.2541	p.L847	0.007	NULL	pfam_Tex-like_N,pfam_Rbsml_prot_S1_RNA-bd_dom,superfamily_NA-bd_OB-fold,superfamily_RuvA_2-like,smart_YqgF/RNaseH-like_dom,smart_RNA-binding_domain_S1,pfscan_Rbsml_prot_S1_RNA-bd_dom	-	no_errors	SRBD1	HGNC	ENSG00000068784	tier1	-	-	46	0	0.00	18	3	14.29
CACNA1H	0	genome.wustl.edu	37	16	1265078	1265078	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	16	1265078	1265078	A	G	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.5036	p.D1679G	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	tier1	-	-	79	0	0.00	85	32	27.35
ENSG00000272231	0	genome.wustl.edu	37	12	74293692	74293701	+	RNA	DEL	ATACACATAC	ATACACATAC	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	ATACACATAC	ATACACATAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	12	74293692	74293701	ATACACATAC	-	DEL	ENSG00000272231	ENST00000606199	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002:0.002:0.002:0.002:0.004:0.007:0.009:0.010:0.011:0.011	-	-	-	no_errors	AC136188.1	Clone_based_ensembl_gene	ENSG00000272231	tier1			NA	NA	NA	NA	NA	NA
DBNL	0	genome.wustl.edu	37	7	44089997	44089997	+	RNA	SNP	G	G	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	7	44089997	44089997	G	T	SNP	DBNL	ENST00000497184	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DBNL	HGNC	ENSG00000136279	tier1	-	-	23	0	0.00	21	6	21.43
GRHPR	0	genome.wustl.edu	37	9	37430673	37430673	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	9	37430673	37430673	C	T	SNP	GRHPR	ENST00000494290	human	ensembl	74_37	+1	known	missense	c.335	p.P112L	0.017	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd	-	no_errors	GRHPR	HGNC	ENSG00000137106	tier1	-	-	81	0	0.00	67	44	39.29
CSMD1	0	genome.wustl.edu	37	8	4494979	4494979	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	8	4494979	4494979	T	C	SNP	CSMD1	ENST00000520002	human	ensembl	74_37	-1	known	missense	c.187	p.I63V	0.277	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	tier1	-	-	39	0	0.00	32	12	27.27
ITGB2	0	genome.wustl.edu	37	21	46311876	46311876	+	Silent	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	21	46311876	46311876	G	A	SNP	ITGB2	ENST00000302347	human	ensembl	74_37	-1	known	silent	c.1260	p.C420	0.930	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_tail,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB2	HGNC	ENSG00000160255	tier1	-	-	36	0	0.00	36	4	10.00
ENSG00000216020	0	genome.wustl.edu	37	3	191693737	191693749	+	RNA	DEL	TCTCTCCGTGTGT	TCTCTCCGTGTGT	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	TCTCTCCGTGTGT	TCTCTCCGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	3	191693737	191693749	TCTCTCCGTGTGT	-	DEL	ENSG00000216020	ENST00000401201	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.003:0.003:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AC026320.1	Clone_based_ensembl_gene	ENSG00000216020	tier1			NA	NA	NA	NA	NA	NA
CRB1	0	genome.wustl.edu	37	1	197396672	197396672	+	Silent	SNP	C	C	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	197396672	197396672	C	A	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	silent	c.2217	p.L739	0.727	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	tier1	-	-	43	0	0.00	35	27	43.55
BCR	0	genome.wustl.edu	37	22	23659864	23659864	+	RNA	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	22	23659864	23659864	C	T	SNP	BCR	ENST00000436990	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	BCR	HGNC	ENSG00000186716	tier1	rs202061168	-	23	0	0.00	8	3	27.27
CYP1A2	0	genome.wustl.edu	37	15	75042751	75042751	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	15	75042751	75042751	T	A	SNP	CYP1A2	ENST00000343932	human	ensembl	74_37	+1	known	missense	c.672	p.H224Q	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A2	HGNC	ENSG00000140505	tier1	-	-	41	0	0.00	40	13	24.53
CYP11B1	0	genome.wustl.edu	37	8	143956671	143956671	+	Silent	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	8	143956671	143956671	C	T	SNP	CYP11B1	ENST00000292427	human	ensembl	74_37	-1	known	silent	c.1179	p.Q393	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B,prints_Cyt_P450	-	no_errors	CYP11B1	HGNC	ENSG00000160882	tier1	-	-	72	0	0.00	90	12	11.76
COMP	0	genome.wustl.edu	37	19	18895797	18895797	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	19	18895797	18895797	C	T	SNP	COMP	ENST00000222271	human	ensembl	74_37	-1	known	missense	c.1823	p.S608N	1.000	pfam_Thrombospondin_C,superfamily_ConA-like_lec_gl_sf	pfam_Thrombospondin_C,pfam_EGF-like_Ca-bd_dom,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	COMP	HGNC	ENSG00000105664	tier1	-	-	88	0	0.00	59	58	49.15
CPSF7	0	genome.wustl.edu	37	11	61183765	61183767	+	In_Frame_Del	DEL	AGG	AGG	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	AGG	AGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	61183765	61183767	AGG	-	DEL	CPSF7	ENST00000340437	human	ensembl	74_37	-1	known	in_frame_del	c.906_904	p.P302in_frame_del	1.000:1.000:1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	CPSF7	HGNC	ENSG00000149532	tier1			33	0	0.00	23	3	11.54
ULK3	0	genome.wustl.edu	37	15	75130779	75130779	+	Splice_Site	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	15	75130779	75130779	A	G	SNP	ULK3	ENST00000440863	human	ensembl	74_37	-1	known	splice_site	c.1167+2	e11+2	0.995	-	-	-	no_errors	ULK3	HGNC	ENSG00000140474	tier1	-	-	48	0	0.00	53	32	37.65
OR4D5	0	genome.wustl.edu	37	11	123810992	123810992	+	Silent	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	123810992	123810992	C	T	SNP	OR4D5	ENST00000307033	human	ensembl	74_37	+1	known	silent	c.669	p.V223	0.280	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4D5	HGNC	ENSG00000171014	tier1	-	-	62	0	0.00	25	10	28.57
FRAS1	0	genome.wustl.edu	37	4	79403057	79403057	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	79403057	79403057	C	T	SNP	FRAS1	ENST00000264895	human	ensembl	74_37	+1	known	missense	c.8543	p.P2848L	1.000	pfam_Calx_beta,smart_Calx_beta	pfam_Calx_beta,pfam_VWF_C,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_VWC_out,smart_VWF_C,smart_Furin_repeat,smart_EG-like_dom,smart_Calx_beta,pfscan_VWF_C	-	no_errors	FRAS1	HGNC	ENSG00000138759	tier1	-	-	64	0	0.00	29	48	62.34
ARHGAP18	0	genome.wustl.edu	37	6	129939838	129939838	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	6	129939838	129939838	T	-	DEL	ARHGAP18	ENST00000368149	human	ensembl	74_37	-1	known	frame_shift_del	c.946	p.T316fs	0.997	superfamily_Rho_GTPase_activation_prot	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP18	HGNC	ENSG00000146376	tier1			108	0	0.00	76	66	46.48
KRT37	0	genome.wustl.edu	37	17	39577807	39577807	+	Silent	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	17	39577807	39577807	C	T	SNP	KRT37	ENST00000225550	human	ensembl	74_37	-1	known	silent	c.1053	p.A351	0.000	pfam_IF	pfam_IF,prints_Keratin_I	-	no_errors	KRT37	HGNC	ENSG00000108417	tier1	rs138622207	-	64	0	0.00	37	27	42.19
LPA	0	genome.wustl.edu	37	6	161010662	161010662	+	Silent	SNP	A	A	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	6	161010662	161010662	A	T	SNP	LPA	ENST00000316300	human	ensembl	74_37	-1	known	silent	c.3870	p.V1290	0.288	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1	-	no_errors	LPA	HGNC	ENSG00000198670	tier1	-	-	93	0	0.00	126	57	31.15
HBBP1	0	genome.wustl.edu	37	11	5263299	5263320	+	RNA	DEL	CATAGGTACAAACATAGTGGAC	CATAGGTACAAACATAGTGGAC	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	CATAGGTACAAACATAGTGGAC	CATAGGTACAAACATAGTGGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	5263299	5263320	CATAGGTACAAACATAGTGGAC	-	DEL	HBBP1	ENST00000454892	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001:0.000:0.000:0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.002:0.002:0.003:0.002:0.002:0.002:0.002:0.002	-	-	-	no_errors	HBBP1	HGNC	ENSG00000229988	tier1			NA	NA	NA	NA	NA	NA
ENSG00000230333	0	genome.wustl.edu	37	7	11418974	11418974	+	RNA	SNP	T	T	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	7	11418974	11418974	T	A	SNP	ENSG00000230333	ENST00000421121	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC004538.3	Clone_based_vega_gene	ENSG00000230333	tier1	-	-	32	0	0.00	11	17	60.71
MYPN	0	genome.wustl.edu	37	10	69881497	69881497	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	10	69881497	69881497	C	T	SNP	MYPN	ENST00000358913	human	ensembl	74_37	+1	known	missense	c.302	p.S101F	0.998	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MYPN	HGNC	ENSG00000138347	tier1	-	-	57	0	0.00	14	20	58.82
HS3ST5	0	genome.wustl.edu	37	6	114383953	114383953	+	Silent	SNP	A	A	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	6	114383953	114383953	A	T	SNP	HS3ST5	ENST00000312719	human	ensembl	74_37	-1	known	silent	c.57	p.L19	1.000	NULL	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	HS3ST5	HGNC	ENSG00000249853	tier1	-	-	50	0	0.00	50	30	37.50
BOD1L1	0	genome.wustl.edu	37	4	13588097	13588097	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	13588097	13588097	C	T	SNP	BOD1L1	ENST00000040738	human	ensembl	74_37	-1	known	missense	c.8356	p.D2786N	0.991	NULL	NULL	-	no_errors	BOD1L1	HGNC	ENSG00000038219	tier1	-	-	51	0	0.00	44	28	38.89
CYP21A2	0	genome.wustl.edu	37	6	32008845	32008845	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	6	32008845	32008845	G	A	SNP	CYP21A2	ENST00000418967	human	ensembl	74_37	+1	known	missense	c.1422	p.M474I	0.000	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	-	no_errors	CYP21A2	HGNC	ENSG00000231852	tier1	-	-	32	0	0.00	36	4	10.00
ARPP21	0	genome.wustl.edu	37	3	35835202	35835202	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	3	35835202	35835202	A	T	SNP	ARPP21	ENST00000417925	human	ensembl	74_37	+1	known	missense	c.2194	p.T732S	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	ARPP21	HGNC	ENSG00000172995	tier1	-	-	106	0	0.00	88	43	32.33
TCHHL1	0	genome.wustl.edu	37	1	152057569	152057569	+	Silent	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	152057569	152057569	A	G	SNP	TCHHL1	ENST00000368806	human	ensembl	74_37	-1	known	silent	c.2589	p.L863	0.002	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	tier1	-	-	126	0	0.00	87	38	30.40
HHLA1	0	genome.wustl.edu	37	8	133100132	133100132	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	8	133100132	133100132	T	A	SNP	HHLA1	ENST00000414222	human	ensembl	74_37	-1	known	missense	c.549	p.E183D	0.638	NULL	NULL	-	no_errors	HHLA1	HGNC	ENSG00000132297	tier1	-	-	56	0	0.00	34	22	39.29
CTBP1-AS2	0	genome.wustl.edu	37	4	1246223	1246223	+	RNA	SNP	A	A	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	1246223	1246223	A	T	SNP	CTBP1-AS2	ENST00000581398	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTBP1-AS2	HGNC	ENSG00000196810	tier1	-	-	48	0	0.00	24	15	38.46
SNX13	0	genome.wustl.edu	37	7	17861150	17861150	+	Silent	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	7	17861150	17861150	G	A	SNP	SNX13	ENST00000428135	human	ensembl	74_37	-1	known	silent	c.1827	p.H609	1.000	pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	pfam_Phox_assoc,pfam_Sorting_nexin_C,pfam_Phox,pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,superfamily_Phox,superfamily_Cyt_c_oxidase_su5A/6,smart_PX_assoc_Snx13,smart_Regulat_G_prot_signal_superfam,smart_Phox,pfscan_Phox,pfscan_Phox_assoc,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	SNX13	HGNC	ENSG00000071189	tier1	-	-	77	0	0.00	96	11	10.28
MAPK15	0	genome.wustl.edu	37	8	144803216	144803216	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	8	144803216	144803216	C	-	DEL	MAPK15	ENST00000338033	human	ensembl	74_37	+1	known	frame_shift_del	c.964	p.R323fs	0.223	superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAPK15	HGNC	ENSG00000181085	tier1			15	0	0.00	10	2	16.67
ANKRD30BL	0	genome.wustl.edu	37	2	132912272	132912272	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	2	132912272	132912272	T	G	SNP	ANKRD30BL	ENST00000295181	human	ensembl	74_37	-1	known	missense	c.577	p.K193Q	0.042	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	tier1	-	-	83	0	0.00	62	10	13.89
PALD1	0	genome.wustl.edu	37	10	72291112	72291113	+	Frame_Shift_Ins	INS	-	-	C			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	10	72291112	72291113	-	C	INS	PALD1	ENST00000263563	human	ensembl	74_37	+1	known	frame_shift_ins	c.535_536	p.Y180fs	1.000:1.000	NULL	smart_Tyr_Pase_cat	-	no_errors	PALD1	HGNC	ENSG00000107719	tier1			105	0	0.00	29	51	63.75
OR1S2	0	genome.wustl.edu	37	11	57971513	57971513	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	57971513	57971513	C	G	SNP	OR1S2	ENST00000302592	human	ensembl	74_37	-1	known	missense	c.141	p.M47I	0.997	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1S2	HGNC	ENSG00000197887	tier1	-	-	103	0	0.00	97	15	13.39
IL36B	0	genome.wustl.edu	37	2	113786528	113786528	+	Silent	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	2	113786528	113786528	A	G	SNP	IL36B	ENST00000259213	human	ensembl	74_37	-1	known	silent	c.249	p.T83	0.001	superfamily_Cytokine_IL1-like	superfamily_Cytokine_IL1-like	-	no_errors	IL36B	HGNC	ENSG00000136696	tier1	-	-	73	0	0.00	39	44	53.01
SLC9A9	0	genome.wustl.edu	37	3	143551065	143551066	+	Splice_Site	INS	-	-	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	3	143551065	143551066	-	A	INS	SLC9A9	ENST00000316549	human	ensembl	74_37	-1	known	splice_site_ins	c.176-3_176-2	e2-2	1.000:0.997	-	-	-	no_errors	SLC9A9	HGNC	ENSG00000181804	tier1			27	0	0.00	28	4	12.50
UBE2K	0	genome.wustl.edu	37	4	39780194	39780194	+	RNA	DEL	A	A	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	39780194	39780194	A	-	DEL	UBE2K	ENST00000438068	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.844	-	-	-	no_errors	UBE2K	HGNC	ENSG00000078140	tier1			51	0	0.00	48	7	12.73
ENSG00000187695	0	genome.wustl.edu	37	3	128664475	128664475	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	3	128664475	128664475	G	A	SNP	ENSG00000187695	ENST00000508239	human	ensembl	74_37	-1	known	missense	c.335	p.A112V	0.979	NULL	NULL	-	no_errors	RP11-723O4.6	Clone_based_vega_gene	ENSG00000187695	tier1	-	-	37	0	0.00	23	12	34.29
ECT2	0	genome.wustl.edu	37	3	172480561	172480561	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	3	172480561	172480561	G	C	SNP	ECT2	ENST00000427830	human	ensembl	74_37	+1	known	missense	c.877	p.E293Q	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	pfam_DH-domain,pfam_BRCT_dom,superfamily_DH-domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DH-domain,pfscan_BRCT_dom,pfscan_DH-domain	-	no_errors	ECT2	HGNC	ENSG00000114346	tier1	-	-	55	0	0.00	55	7	11.29
MASP2	0	genome.wustl.edu	37	1	11087529	11087529	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	11087529	11087529	C	A	SNP	MASP2	ENST00000400897	human	ensembl	74_37	-1	known	missense	c.1474	p.A492S	0.000	pfam_Peptidase_S1,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	MASP2	HGNC	ENSG00000009724	tier1	-	-	81	0	0.00	64	31	32.63
DNAJC8	0	genome.wustl.edu	37	1	28534923	28534923	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	28534923	28534923	A	C	SNP	DNAJC8	ENST00000263697	human	ensembl	74_37	-1	known	missense	c.401	p.V134G	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC8	HGNC	ENSG00000126698	tier1	-	-	52	0	0.00	32	18	36.00
ENSG00000257057	0	genome.wustl.edu	37	11	94265072	94265072	+	RNA	SNP	A	A	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	94265072	94265072	A	T	SNP	ENSG00000257057	ENST00000542198	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.790	-	-	-	no_errors	RP11-867G2.2	Clone_based_vega_gene	ENSG00000257057	tier1	-	-	52	0	0.00	28	22	44.00
ZCCHC3	0	genome.wustl.edu	37	20	279424	279424	+	Silent	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	20	279424	279424	C	T	SNP	ZCCHC3	ENST00000382352	human	ensembl	74_37	+1	known	silent	c.1197	p.T399	0.926	NULL	pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC3	HGNC	ENSG00000177764	tier1	-	-	27	0	0.00	18	19	51.35
FRMD4B	0	genome.wustl.edu	37	3	69299250	69299250	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	3	69299250	69299250	C	T	SNP	FRMD4B	ENST00000398540	human	ensembl	74_37	-1	known	missense	c.502	p.G168R	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_DUF3338,pfam_FERM_central,pfam_FERM_PH-like_C,pfam_FERM_N,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam	-	no_errors	FRMD4B	HGNC	ENSG00000114541	tier1	-	-	99	0	0.00	74	24	24.49
PRB3	0	genome.wustl.edu	37	12	11420653	11420653	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	12	11420653	11420653	G	A	SNP	PRB3	ENST00000381842	human	ensembl	74_37	-1	known	missense	c.530	p.P177L	0.000	NULL	NULL	-	no_errors	PRB3	HGNC	ENSG00000197870	tier1	-	-	92	0	0.00	55	26	32.10
SCN4B	0	genome.wustl.edu	37	11	118006807	118006808	+	RNA	INS	-	-	GGGGGAGAAGC			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	118006807	118006808	-	GGGGGAGAAGC	INS	SCN4B	ENST00000423160	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SCN4B	HGNC	ENSG00000177098	tier1			NA	NA	NA	NA	NA	NA
TTN	0	genome.wustl.edu	37	2	179451905	179451905	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	2	179451905	179451905	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.56329	p.E18777K	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	60	0	0.00	42	10	19.23
OR8A1	0	genome.wustl.edu	37	11	124440623	124440623	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	124440623	124440623	G	C	SNP	OR8A1	ENST00000284287	human	ensembl	74_37	+1	known	missense	c.659	p.G220A	0.009	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8A1	HGNC	ENSG00000196119	tier1	-	-	50	0	0.00	14	17	54.84
BCL11A	0	genome.wustl.edu	37	2	60687304	60687304	+	RNA	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	2	60687304	60687304	A	G	SNP	BCL11A	ENST00000477659	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.436	-	-	-	no_errors	BCL11A	HGNC	ENSG00000119866	tier1	-	-	32	0	0.00	30	7	17.50
SLC7A4	0	genome.wustl.edu	37	22	21385529	21385529	+	Silent	SNP	G	G	C			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	22	21385529	21385529	G	C	SNP	SLC7A4	ENST00000382932	human	ensembl	74_37	-1	known	silent	c.573	p.S191	0.957	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	pfam_AA-permease/SLC12A_dom,pirsf_AA/rel_permease1	-	no_errors	SLC7A4	HGNC	ENSG00000099960	tier1	-	-	34	0	0.00	5	39	88.64
EPHA7	0	genome.wustl.edu	37	6	93964481	93964481	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	6	93964481	93964481	C	T	SNP	EPHA7	ENST00000369303	human	ensembl	74_37	-1	known	missense	c.2416	p.E806K	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA7	HGNC	ENSG00000135333	tier1	-	-	37	0	0.00	35	12	25.53
LOC285556	0	genome.wustl.edu	37	4	100572534	100572534	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	100572534	100572534	T	G	SNP	LOC285556	ENST00000511828	human	ensembl	74_37	-1	putative	missense	c.3272	p.D1091A	0.997	NULL	NULL	-	no_errors	RP11-766F14.2	Clone_based_vega_gene	ENSG00000248713	tier1	-	-	66	0	0.00	49	31	38.75
FAM129A	0	genome.wustl.edu	37	1	184859248	184859248	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	184859248	184859248	G	A	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	missense	c.427	p.P143S	1.000	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842	tier1	-	-	47	0	0.00	19	17	47.22
SRRT	0	genome.wustl.edu	37	7	100478923	100478923	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	7	100478923	100478923	G	A	SNP	SRRT	ENST00000388793	human	ensembl	74_37	+1	known	missense	c.140	p.R47H	1.000	NULL	pfam_Arsenite-R_2,pfam_DUF3546	-	no_errors	SRRT	HGNC	ENSG00000087087	tier1	-	-	61	0	0.00	35	23	39.66
PRDM10	0	genome.wustl.edu	37	11	129785666	129785666	+	Silent	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	129785666	129785666	G	A	SNP	PRDM10	ENST00000358825	human	ensembl	74_37	-1	known	silent	c.2427	p.P809	0.479	NULL	pfam_Znf_C2H2,pfam_Znf_C2H2_jaz,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PRDM10	HGNC	ENSG00000170325	tier1	rs145915939	-	69	0	0.00	8	29	76.32
FAM129A	0	genome.wustl.edu	37	1	184859249	184859249	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	184859249	184859249	G	C	SNP	FAM129A	ENST00000367511	human	ensembl	74_37	-1	known	missense	c.426	p.D142E	1.000	NULL	NULL	-	no_errors	FAM129A	HGNC	ENSG00000135842	tier1	-	-	47	0	0.00	19	18	48.65
GALNTL6	0	genome.wustl.edu	37	4	173873290	173873290	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	173873290	173873290	C	A	SNP	GALNTL6	ENST00000506823	human	ensembl	74_37	+1	known	missense	c.1252	p.Q418K	1.000	NULL	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNTL6	HGNC	ENSG00000174473	tier1	-	-	145	0	0.00	111	52	31.90
CHRNA9	0	genome.wustl.edu	37	4	40339266	40339266	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	40339266	40339266	C	T	SNP	CHRNA9	ENST00000310169	human	ensembl	74_37	+1	known	missense	c.250	p.R84C	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,prints_Neur_channel,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA9	HGNC	ENSG00000174343	tier1	-	-	43	0	0.00	26	22	45.83
TUBD1	0	genome.wustl.edu	37	17	57944036	57944036	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	17	57944036	57944036	G	T	SNP	TUBD1	ENST00000325752	human	ensembl	74_37	-1	known	missense	c.1009	p.H337N	0.802	superfamily_Tub_FtsZ_C	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,prints_Delta_tubulin,prints_Tubulin,prints_Epsilon_tubulin	-	no_errors	TUBD1	HGNC	ENSG00000108423	tier1	-	-	88	0	0.00	43	4	8.51
BTNL8	0	genome.wustl.edu	37	5	180377117	180377117	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	5	180377117	180377117	G	A	SNP	BTNL8	ENST00000340184	human	ensembl	74_37	+1	known	missense	c.1076	p.R359Q	0.042	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY,pfscan_Ig-like_dom	-	no_errors	BTNL8	HGNC	ENSG00000113303	tier1	-	-	57	0	0.00	32	41	56.16
HERC1	0	genome.wustl.edu	37	15	63958195	63958199	+	Frame_Shift_Del	DEL	ATTTG	ATTTG	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	ATTTG	ATTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	15	63958195	63958199	ATTTG	-	DEL	HERC1	ENST00000443617	human	ensembl	74_37	-1	known	frame_shift_del	c.8478_8474	p.S2825fs	0.652:0.646:0.643:0.586:1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl_sf,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	tier1			NA	NA	NA	NA	NA	NA
BRINP2	0	genome.wustl.edu	37	1	177249986	177249986	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	1	177249986	177249986	G	C	SNP	BRINP2	ENST00000361539	human	ensembl	74_37	+1	known	missense	c.1674	p.K558N	1.000	NULL	pfam_MACPF,smart_MACPF	-	no_errors	BRINP2	HGNC	ENSG00000198797	tier1	-	-	36	0	0.00	14	24	63.16
GRID2IP	0	genome.wustl.edu	37	7	6541514	6541514	+	Silent	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	7	6541514	6541514	C	T	SNP	GRID2IP	ENST00000457091	human	ensembl	74_37	-1	putative	silent	c.3297	p.L1099	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,pfam_PDZ,superfamily_PDZ,smart_PDZ,smart_FH2_Formin,pfscan_PDZ	-	no_errors	GRID2IP	HGNC	ENSG00000215045	tier1	-	-	36	0	0.00	31	15	32.61
SLC18A2	0	genome.wustl.edu	37	10	119013728	119013728	+	RNA	SNP	G	G	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	10	119013728	119013728	G	T	SNP	SLC18A2	ENST00000497497	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	SLC18A2	HGNC	ENSG00000165646	tier1	-	-	39	0	0.00	14	15	51.72
TRPM7	0	genome.wustl.edu	37	15	50920375	50920375	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	15	50920375	50920375	G	T	SNP	TRPM7	ENST00000313478	human	ensembl	74_37	-1	known	missense	c.1276	p.H426N	1.000	NULL	pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	TRPM7	HGNC	ENSG00000092439	tier1	-	-	39	0	0.00	23	3	11.54
SPIC	0	genome.wustl.edu	37	12	101880268	101880268	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	12	101880268	101880268	A	G	SNP	SPIC	ENST00000299272	human	ensembl	74_37	+1	known	missense	c.466	p.K156E	0.385	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	pfam_Ets_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	SPIC	HGNC	ENSG00000166211	tier1	-	-	42	0	0.00	37	12	24.49
OC90	0	genome.wustl.edu	37	8	133051332	133051332	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	8	133051332	133051332	C	T	SNP	OC90	ENST00000443356	human	ensembl	74_37	-1	known	missense	c.496	p.D166N	1.000	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	OC90	Uniprot_gn	ENSG00000258417	tier1	-	-	42	0	0.00	60	6	9.09
CAMSAP1	0	genome.wustl.edu	37	9	138714789	138714789	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	9	138714789	138714789	G	A	SNP	CAMSAP1	ENST00000409386	human	ensembl	74_37	-1	known	missense	c.1751	p.A584V	0.479	NULL	pfam_CKK_domain,pfam_CAMSAP_CH,pfam_CH-domain,superfamily_PRC_barrel-like,superfamily_CH-domain	-	no_errors	CAMSAP1	HGNC	ENSG00000130559	tier1	-	-	43	0	0.00	55	9	14.06
DDX10	0	genome.wustl.edu	37	11	108788635	108788637	+	In_Frame_Del	DEL	TGA	TGA	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	11	108788635	108788637	TGA	-	DEL	DDX10	ENST00000322536	human	ensembl	74_37	+1	known	in_frame_del	c.2340_2342	p.D784in_frame_del	0.998:0.997:0.996	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX10	HGNC	ENSG00000178105	tier1			34	0	0.00	19	3	13.64
AFAP1L2	0	genome.wustl.edu	37	10	116062144	116062144	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	10	116062144	116062144	C	A	SNP	AFAP1L2	ENST00000545353	human	ensembl	74_37	-1	known	missense	c.1543	p.A515S	0.992	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1L2	HGNC	ENSG00000169129	tier1	-	-	27	0	0.00	6	12	66.67
DLC1	0	genome.wustl.edu	37	8	12943085	12943086	+	RNA	INS	-	-	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	8	12943085	12943086	-	T	INS	DLC1	ENST00000510318	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DLC1	HGNC	ENSG00000164741	tier1			35	0	0.00	34	3	8.11
HPSE2	0	genome.wustl.edu	37	10	100481499	100481499	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	10	100481499	100481499	G	A	SNP	HPSE2	ENST00000370552	human	ensembl	74_37	-1	known	nonsense	c.871	p.Q291*	1.000	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_79,superfamily_Glycoside_hydrolase_SF	-	no_errors	HPSE2	HGNC	ENSG00000172987	tier1	-	-	65	0	0.00	47	6	11.32
ITGA4	0	genome.wustl.edu	37	2	182346351	182346351	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	2	182346351	182346351	C	T	SNP	ITGA4	ENST00000397033	human	ensembl	74_37	+1	known	missense	c.781	p.R261W	0.961	smart_Int_alpha_beta-p	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	tier1	-	-	65	0	0.00	45	4	8.16
CEP44	0	genome.wustl.edu	37	4	175225412	175225412	+	Silent	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	4	175225412	175225412	A	G	SNP	CEP44	ENST00000426172	human	ensembl	74_37	+1	known	silent	c.399	p.Q133	0.982	NULL	NULL	-	no_errors	CEP44	HGNC	ENSG00000164118	tier1	-	-	41	0	0.00	44	6	12.00
SCAND3	0	genome.wustl.edu	37	6	28542992	28542992	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	6	28542992	28542992	T	G	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.1490	p.E497A	0.983	superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	tier1	-	-	22	0	0.00	18	11	37.93
ACSS2	0	genome.wustl.edu	37	20	33501958	33501958	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	20	33501958	33501958	C	T	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	nonsense	c.703	p.Q235*	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSS2	HGNC	ENSG00000131069	tier1	-	-	42	0	0.00	30	19	38.78
SGOL2	0	genome.wustl.edu	37	2	201435917	201435917	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	2	201435917	201435917	A	G	SNP	SGOL2	ENST00000357799	human	ensembl	74_37	+1	known	missense	c.848	p.N283S	0.000	NULL	NULL	-	no_errors	SGOL2	HGNC	ENSG00000163535	tier1	-	-	25	0	0.00	22	7	24.14
CEACAM5	0	genome.wustl.edu	37	19	42224051	42224051	+	Silent	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	19	42224051	42224051	C	T	SNP	CEACAM5	ENST00000221992	human	ensembl	74_37	+1	known	silent	c.1695	p.D565	0.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	CEACAM5	HGNC	ENSG00000105388	tier1	-	-	144	0	0.00	88	119	57.49
TPH2	0	genome.wustl.edu	37	12	72425339	72425339	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	12	72425339	72425339	A	G	SNP	TPH2	ENST00000333850	human	ensembl	74_37	+1	known	missense	c.1337	p.Y446C	1.000	pfam_Aromatic-AA_hydroxylase_C,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	pfam_Aromatic-AA_hydroxylase_C,pfam_ACT_dom,superfamily_Aromatic-AA_hydroxylase_C,pirsf_Tyrosine_3-monooxygenase-like,prints_Aromatic-AA_hydroxylase_C,tigrfam_Trp_5_mOase	-	no_errors	TPH2	HGNC	ENSG00000139287	tier1	-	-	79	0	0.00	52	22	29.33
GAPVD1	0	genome.wustl.edu	37	9	128025963	128025989	+	Splice_Site	DEL	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT	-			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	CAGCACTCCATCTGTAGGTATGTCTGT	CAGCACTCCATCTGTAGGTATGTCTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	9	128025963	128025989	CAGCACTCCATCTGTAGGTATGTCTGT	-	DEL	GAPVD1	ENST00000469528	human	ensembl	74_37	+1	known	splice_site_del	c.NULL	NULL	1.000:1.000:1.000:1.000:1.000:0.999:0.996:0.980:0.970:0.963:0.961:0.959:0.952:0.948:0.947:0.950:0.961:0.966:0.966:0.969:0.974:0.982:0.984:0.985:0.984:0.985:0.993	-	-	-	no_errors	GAPVD1	HGNC	ENSG00000165219	tier1			NA	NA	NA	NA	NA	NA
TBC1D3P1-DHX40P1	0	genome.wustl.edu	37	17	58066651	58066651	+	RNA	SNP	C	C	T			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	17	58066651	58066651	C	T	SNP	TBC1D3P1-DHX40P1	ENST00000587125	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	TBC1D3P1-DHX40P1	HGNC	ENSG00000267104	tier1	-	-	48	0	0.00	29	7	19.44
LOC101929888	0	genome.wustl.edu	37	17	78177536	78177536	+	RNA	SNP	C	C	G			TCGA-DX-A3U9-01A-11D-A307-09	TCGA-DX-A3U9-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	757e3c75-8782-4f76-89b7-c2736223db4d	c8fc1be9-0d23-4f7b-8759-d4076ab6651d	17	78177536	78177536	C	G	SNP	LOC101929888	ENST00000570309	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-334C17.5	Clone_based_vega_gene	ENSG00000262580	tier1	-	-	42	0	0.00	19	7	26.92
