Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TSTD3	0	genome.wustl.edu	37	6	99968898	99968899	+	RNA	INS	-	-	GCGCC			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	6	99968898	99968899	-	GCGCC	INS	TSTD3	ENST00000452647	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	TSTD3	HGNC	ENSG00000228439	tier1			NA	NA	NA	NA	NA	NA
SAR1A	0	genome.wustl.edu	37	10	71921382	71921382	+	Silent	SNP	T	T	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	10	71921382	71921382	T	C	SNP	SAR1A	ENST00000373238	human	ensembl	74_37	-1	known	silent	c.171	p.L57	0.893	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gprotein_alpha_su,pfam_MIRO-like,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su,pfam_Small_GTPase,pfam_Gprotein_alpha_su,pfam_MIRO-like,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	SAR1A	HGNC	ENSG00000079332	tier1	-	-	55	0	0.00	26	9	25.71
PKN2	0	genome.wustl.edu	37	1	89206944	89206944	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	1	89206944	89206944	G	T	SNP	PKN2	ENST00000370521	human	ensembl	74_37	+1	known	missense	c.322	p.V108F	1.000	pfam_HR1_rho-bd,smart_HR1_rho-bd	pfam_Prot_kinase_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_dom,smart_HR1_rho-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	tier1	-	-	37	0	0.00	44	4	8.33
SRSF3	0	genome.wustl.edu	37	6	36564553	36564553	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	6	36564553	36564553	C	A	SNP	SRSF3	ENST00000373715	human	ensembl	74_37	+1	known	missense	c.14	p.S5Y	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SRSF3	HGNC	ENSG00000112081	tier1	-	-	54	0	0.00	45	4	8.16
JAK1	0	genome.wustl.edu	37	1	65305469	65305469	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	1	65305469	65305469	C	A	SNP	JAK1	ENST00000342505	human	ensembl	74_37	-1	known	missense	c.2659	p.G887W	1.000	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak1,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	JAK1	HGNC	ENSG00000162434	tier1	-	-	33	0	0.00	7	16	69.57
LSR	0	genome.wustl.edu	37	19	35739793	35739793	+	Silent	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	35739793	35739793	C	T	SNP	LSR	ENST00000361790	human	ensembl	74_37	+1	known	silent	c.12	p.D4	0.000	NULL	pfam_LISCH7,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LSR	HGNC	ENSG00000105699	tier1	-	-	36	0	0.00	37	4	9.76
AMER1	0	genome.wustl.edu	37	X	63410105	63410105	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	X	63410105	63410105	G	A	SNP	AMER1	ENST00000330258	human	ensembl	74_37	-1	known	missense	c.3062	p.A1021V	0.852	NULL	pfam_Uncharacterised_FAM123	-	no_errors	AMER1	HGNC	ENSG00000184675	tier1	-	-	75	0	0.00	8	30	78.95
KRT77	0	genome.wustl.edu	37	12	53086631	53086631	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	12	53086631	53086631	C	T	SNP	KRT77	ENST00000341809	human	ensembl	74_37	-1	known	missense	c.1114	p.G372R	0.999	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT77	HGNC	ENSG00000189182	tier1	-	-	34	0	0.00	22	15	40.54
EGF	0	genome.wustl.edu	37	4	110897337	110897337	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	110897337	110897337	G	C	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.1999	p.E667Q	1.000	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	tier1	-	-	54	0	0.00	48	14	22.58
TET2	0	genome.wustl.edu	37	4	106196793	106196793	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	106196793	106196793	G	A	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.5126	p.C1709Y	1.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	tier1	-	-	35	0	0.00	25	18	41.86
ENSG00000205414	0	genome.wustl.edu	37	16	50641010	50641010	+	RNA	SNP	C	C	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	16	50641010	50641010	C	A	SNP	ENSG00000205414	ENST00000379963	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-401P9.6	Clone_based_vega_gene	ENSG00000205414	tier1	-	-	25	0	0.00	21	4	16.00
IRX1	0	genome.wustl.edu	37	5	3600753	3600753	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	5	3600753	3600753	C	A	SNP	IRX1	ENST00000302006	human	ensembl	74_37	+1	known	missense	c.1343	p.P448Q	0.996	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX1	HGNC	ENSG00000170549	tier1	-	-	48	0	0.00	34	4	10.53
PDGFC	0	genome.wustl.edu	37	4	157892061	157892061	+	RNA	SNP	T	T	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	157892061	157892061	T	A	SNP	PDGFC	ENST00000513664	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PDGFC	HGNC	ENSG00000145431	tier1	-	-	28	0	0.00	13	7	35.00
TET2	0	genome.wustl.edu	37	4	106196802	106196802	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	106196802	106196802	G	A	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.5135	p.R1712K	0.993	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	tier1	-	-	35	0	0.00	24	16	40.00
TMEM14B	0	genome.wustl.edu	37	6	10756863	10756864	+	RNA	INS	-	-	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	6	10756863	10756864	-	A	INS	TMEM14B	ENST00000486421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.029:0.005	-	-	-	no_errors	TMEM14B	HGNC	ENSG00000137210	tier1			24	0	0.00	13	4	23.53
CLOCK	0	genome.wustl.edu	37	4	56304530	56304532	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	56304530	56304532	CTG	-	DEL	CLOCK	ENST00000309964	human	ensembl	74_37	-1	known	in_frame_del	c.2280_2278	p.Q760in_frame_del	0.944:0.945:1.000	NULL	pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom,prints_Nuc_translocat	-	no_errors	CLOCK	HGNC	ENSG00000134852	tier1			27	0	0.00	7	2	22.22
ENSG00000255621	0	genome.wustl.edu	37	12	13153388	13153389	+	RNA	INS	-	-	GCAGCAGTGCAGCAGT			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	12	13153388	13153389	-	GCAGCAGTGCAGCAGT	INS	ENSG00000255621	ENST00000543321	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.055:0.003	-	-	-	no_errors	RP11-377D9.3	Clone_based_vega_gene	ENSG00000255621	tier1			NA	NA	NA	NA	NA	NA
PRRC2A	0	genome.wustl.edu	37	6	31604303	31604303	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	6	31604303	31604303	C	T	SNP	PRRC2A	ENST00000376007	human	ensembl	74_37	+1	known	missense	c.5852	p.P1951L	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2A	HGNC	ENSG00000204469	tier1	-	-	73	0	0.00	28	16	36.36
SAFB2	0	genome.wustl.edu	37	19	5592842	5592842	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	5592842	5592842	C	T	SNP	SAFB2	ENST00000252542	human	ensembl	74_37	-1	known	missense	c.2264	p.R755H	0.981	NULL	pfam_RRM_dom,pfam_SAP_dom,smart_SAP_dom,smart_RRM_dom,pfscan_SAP_dom,pfscan_RRM_dom	-	no_errors	SAFB2	HGNC	ENSG00000130254	tier1	-	-	43	0	0.00	46	4	8.00
MCC	0	genome.wustl.edu	37	5	112437570	112437570	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	5	112437570	112437570	C	A	SNP	MCC	ENST00000302475	human	ensembl	74_37	-1	known	nonsense	c.694	p.E232*	1.000	superfamily_tRNA-bd_arm	pfam_USH1C-bd_PDZ_domain,superfamily_tRNA-bd_arm	-	no_errors	MCC	HGNC	ENSG00000171444	tier1	-	-	22	0	0.00	9	3	25.00
ANPEP	0	genome.wustl.edu	37	15	90349396	90349396	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	15	90349396	90349396	C	T	SNP	ANPEP	ENST00000300060	human	ensembl	74_37	-1	known	missense	c.419	p.R140H	0.042	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	tier1	rs145360414	-	38	0	0.00	25	12	32.43
NTM	0	genome.wustl.edu	37	11	132206566	132206566	+	RNA	DEL	T	T	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	11	132206566	132206566	T	-	DEL	NTM	ENST00000474900	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.131	-	-	-	no_errors	NTM	HGNC	ENSG00000182667	tier1			22	0	0.00	25	6	19.35
VSIG10L	0	genome.wustl.edu	37	19	51845231	51845231	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	51845231	51845231	G	A	SNP	VSIG10L	ENST00000335624	human	ensembl	74_37	-1	novel	missense	c.71	p.A24V	0.015	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	VSIG10L	HGNC	ENSG00000186806	tier1	-	-	21	0	0.00	13	12	48.00
TGM7	0	genome.wustl.edu	37	15	43579632	43579632	+	Silent	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	15	43579632	43579632	G	A	SNP	TGM7	ENST00000452443	human	ensembl	74_37	-1	known	silent	c.711	p.G237	0.680	NULL	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495	tier1	-	-	44	0	0.00	43	4	8.51
PLD1	0	genome.wustl.edu	37	3	171320971	171320971	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	3	171320971	171320971	C	T	SNP	PLD1	ENST00000351298	human	ensembl	74_37	-1	known	missense	c.3122	p.R1041H	1.000	pirsf_PLipase_D_euk	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	tier1	-	-	70	0	0.00	36	4	10.00
PLBD1	0	genome.wustl.edu	37	12	14656854	14656854	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	12	14656854	14656854	G	T	SNP	PLBD1	ENST00000240617	human	ensembl	74_37	-1	known	missense	c.1514	p.S505Y	1.000	pfam_PLipase_B-like	pfam_PLipase_B-like	-	no_errors	PLBD1	HGNC	ENSG00000121316	tier1	-	-	35	0	0.00	40	10	20.00
EGF	0	genome.wustl.edu	37	4	110897208	110897208	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	110897208	110897208	G	A	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.1870	p.E624K	1.000	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	tier1	-	-	74	0	0.00	59	28	32.18
FSIP2	0	genome.wustl.edu	37	2	186671383	186671383	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	2	186671383	186671383	G	A	SNP	FSIP2	ENST00000343098	human	ensembl	74_37	+1	known	missense	c.17617	p.A5873T	0.143	NULL	NULL	-	no_errors	FSIP2	HGNC	ENSG00000188738	tier1	-	-	74	0	0.00	50	22	30.56
KRT10	0	genome.wustl.edu	37	17	38975103	38975104	+	In_Frame_Ins	INS	-	-	GCT			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	17	38975103	38975104	-	GCT	INS	KRT10	ENST00000269576	human	ensembl	74_37	-1	known	in_frame_ins	c.1684_1683	p.563in_frame_insS	0.124:0.323	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT10	HGNC	ENSG00000186395	tier1			29	0	0.00	22	4	15.38
LCOR	0	genome.wustl.edu	37	10	98740602	98740602	+	RNA	SNP	C	C	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	10	98740602	98740602	C	A	SNP	LCOR	ENST00000498444	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	LCOR	HGNC	ENSG00000196233	tier1	-	-	30	0	0.00	16	3	15.79
IGDCC3	0	genome.wustl.edu	37	15	65624330	65624330	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	15	65624330	65624330	T	-	DEL	IGDCC3	ENST00000327987	human	ensembl	74_37	-1	known	frame_shift_del	c.1097	p.N366fs	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC3	HGNC	ENSG00000174498	tier1			24	0	0.00	23	2	8.00
UTP3	0	genome.wustl.edu	37	4	71554691	71554693	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	71554691	71554693	GGA	-	DEL	UTP3	ENST00000254803	human	ensembl	74_37	+1	known	in_frame_del	c.297_299	p.E103in_frame_del	0.002:0.002:0.002	NULL	pfam_Sas10_C_dom,pfam_Sas10/Utp3/C1D	-	no_errors	UTP3	HGNC	ENSG00000132467	tier1			30	0	0.00	12	3	20.00
CLUH	0	genome.wustl.edu	37	17	2603734	2603734	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	17	2603734	2603734	C	A	SNP	CLUH	ENST00000435359	human	ensembl	74_37	-1	known	missense	c.1094	p.R365M	1.000	NULL	superfamily_GSKIP_dom	-	no_errors	CLUH	HGNC	ENSG00000132361	tier1	-	-	56	0	0.00	42	4	8.70
C22orf26	0	genome.wustl.edu	37	22	46449708	46449708	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	22	46449708	46449708	G	C	SNP	C22orf26	ENST00000333761	human	ensembl	74_37	-1	known	missense	c.266	p.A89G	1.000	NULL	NULL	-	no_errors	C22orf26	HGNC	ENSG00000182257	tier1	-	-	8	0	0.00	4	8	66.67
CRX	0	genome.wustl.edu	37	19	48339521	48339521	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	48339521	48339521	G	A	SNP	CRX	ENST00000221996	human	ensembl	74_37	+1	known	missense	c.122	p.R41Q	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,pfam_Otx_TF_C,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	CRX	HGNC	ENSG00000105392	tier1	rs61748436	-	38	0	0.00	26	6	18.75
SLC16A4	0	genome.wustl.edu	37	1	110906426	110906427	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	1	110906426	110906427	-	A	INS	SLC16A4	ENST00000369779	human	ensembl	74_37	-1	known	frame_shift_ins	c.1426_1425	p.V475fs	0.998:0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A4	HGNC	ENSG00000168679	tier1			21	0	0.00	22	3	12.00
OCSTAMP	0	genome.wustl.edu	37	20	45170491	45170491	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	20	45170491	45170491	G	A	SNP	OCSTAMP	ENST00000279028	human	ensembl	74_37	-1	known	missense	c.1123	p.H375Y	0.002	pfam_DC_STAMP-like	pfam_DC_STAMP-like	-	no_errors	OCSTAMP	HGNC	ENSG00000149635	tier1	-	-	23	0	0.00	20	4	16.67
HCN2	0	genome.wustl.edu	37	19	616057	616057	+	Silent	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	616057	616057	G	C	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	silent	c.2253	p.A751	0.061	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822	tier1	rs201222040	-	8	0	0.00	7	7	50.00
FAM221A	0	genome.wustl.edu	37	7	23737906	23737906	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	7	23737906	23737906	A	C	SNP	FAM221A	ENST00000344962	human	ensembl	74_37	+1	known	missense	c.733	p.T245P	0.092	NULL	NULL	-	no_errors	FAM221A	HGNC	ENSG00000188732	tier1	-	-	40	0	0.00	35	17	32.69
PDE9A	0	genome.wustl.edu	37	21	44195538	44195538	+	RNA	DEL	A	A	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	21	44195538	44195538	A	-	DEL	PDE9A	ENST00000460989	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE9A	HGNC	ENSG00000160191	tier1			13	0	0.00	17	2	10.53
TET2	0	genome.wustl.edu	37	4	106197126	106197126	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	106197126	106197126	G	C	SNP	TET2	ENST00000380013	human	ensembl	74_37	+1	known	missense	c.5459	p.S1820T	0.000	NULL	NULL	-	no_errors	TET2	HGNC	ENSG00000168769	tier1	-	-	13	0	0.00	15	9	36.00
MAOA	0	genome.wustl.edu	37	X	43602982	43602982	+	RNA	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	X	43602982	43602982	C	T	SNP	MAOA	ENST00000490604	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	MAOA	HGNC	ENSG00000189221	tier1	-	-	14	0	0.00	6	5	45.45
SNX2	0	genome.wustl.edu	37	5	122135524	122135524	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	5	122135524	122135524	G	A	SNP	SNX2	ENST00000379516	human	ensembl	74_37	+1	known	missense	c.364	p.V122M	0.998	pfam_Sorting_nexin_N	pfam_Vps5_C,pfam_Sorting_nexin_N,pfam_Phox,superfamily_Phox,smart_Phox,pfscan_Phox	-	no_errors	SNX2	HGNC	ENSG00000205302	tier1	rs138514194	-	30	0	0.00	22	3	12.00
EGF	0	genome.wustl.edu	37	4	110897311	110897311	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	110897311	110897311	G	A	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	nonsense	c.1973	p.W658*	1.000	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	tier1	-	-	63	0	0.00	57	16	21.92
VDAC1	0	genome.wustl.edu	37	5	133316708	133316708	+	RNA	DEL	T	T	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	5	133316708	133316708	T	-	DEL	VDAC1	ENST00000492324	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	VDAC1	HGNC	ENSG00000213585	tier1			10	0	0.00	10	3	23.08
ZBED4	0	genome.wustl.edu	37	22	50279664	50279664	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	22	50279664	50279664	A	G	SNP	ZBED4	ENST00000216268	human	ensembl	74_37	+1	known	missense	c.2354	p.Q785R	0.998	superfamily_RNaseH-like_dom	pfam_Znf_BED_prd,pfam_HATC_dom_C,superfamily_RNaseH-like_dom,smart_Znf_BED_prd,pfscan_Znf_BED_prd	-	no_errors	ZBED4	HGNC	ENSG00000100426	tier1	-	-	28	0	0.00	24	12	33.33
ATG9B	0	genome.wustl.edu	37	7	150721484	150721484	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	7	150721484	150721484	C	-	DEL	ATG9B	ENST00000377974	human	ensembl	74_37	-1	known	frame_shift_del	c.27	p.R10fs	0.511	NULL	pfam_Autophagy-rel_prot_9	-	no_errors	ATG9B	HGNC	ENSG00000181652	tier1			15	0	0.00	16	2	11.11
ANKRD17	0	genome.wustl.edu	37	4	73941998	73941998	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	73941998	73941998	C	T	SNP	ANKRD17	ENST00000358602	human	ensembl	74_37	-1	known	missense	c.7762	p.G2588R	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKRD17	HGNC	ENSG00000132466	tier1	-	-	36	0	0.00	27	3	10.00
TDRD12	0	genome.wustl.edu	37	19	33281462	33281462	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	33281462	33281462	C	T	SNP	TDRD12	ENST00000444215	human	ensembl	74_37	+1	known	missense	c.1147	p.P383S	1.000	NULL	pfam_Tudor,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase	-	no_errors	TDRD12	HGNC	ENSG00000173809	tier1	-	-	16	0	0.00	13	6	31.58
CEP250	0	genome.wustl.edu	37	20	34078472	34078472	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	20	34078472	34078472	C	T	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.2596	p.R866C	0.618	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	tier1	-	-	32	0	0.00	38	4	9.52
MET	0	genome.wustl.edu	37	7	116340270	116340270	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	7	116340270	116340270	G	A	SNP	MET	ENST00000318493	human	ensembl	74_37	+1	known	missense	c.1132	p.V378I	1.000	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pirsf_Tyr_kinase_HGF/MSP_rcpt,pfam_Semap_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_IPT,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Kinase-like_dom,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Semap_dom,pfscan_Prot_kinase_dom	-	no_errors	MET	HGNC	ENSG00000105976	tier1	-	-	31	0	0.00	28	14	33.33
TSHZ3	0	genome.wustl.edu	37	19	31768099	31768099	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	31768099	31768099	C	T	SNP	TSHZ3	ENST00000240587	human	ensembl	74_37	-1	known	missense	c.2600	p.S867N	1.000	NULL	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	TSHZ3	HGNC	ENSG00000121297	tier1	-	-	31	0	0.00	45	4	8.16
EGF	0	genome.wustl.edu	37	4	110897298	110897298	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	4	110897298	110897298	G	A	SNP	EGF	ENST00000265171	human	ensembl	74_37	+1	known	missense	c.1960	p.D654N	0.992	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Pro-epidermal_GF,pfam_LDLR_classB_rpt,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_LDLR_classB_rpt	-	no_errors	EGF	HGNC	ENSG00000138798	tier1	-	-	65	0	0.00	55	18	24.66
MDGA2	0	genome.wustl.edu	37	14	47324254	47324254	+	Silent	SNP	A	A	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	14	47324254	47324254	A	C	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	silent	c.2856	p.V952	0.999	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781	tier1	-	-	40	0	0.00	37	22	36.67
RIN1	0	genome.wustl.edu	37	11	66102588	66102588	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	11	66102588	66102588	G	T	SNP	RIN1	ENST00000311320	human	ensembl	74_37	-1	known	missense	c.682	p.L228M	1.000	NULL	pfam_VPS9,pfam_Ras-assoc,smart_SH2,smart_VPS9_subgr,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN1	HGNC	ENSG00000174791	tier1	-	-	27	0	0.00	25	4	13.79
DCAF8L2	0	genome.wustl.edu	37	X	27766328	27766328	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	X	27766328	27766328	C	T	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	missense	c.1316	p.A439V	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186	tier1	-	-	44	0	0.00	50	10	16.67
EIF2D	0	genome.wustl.edu	37	1	206778849	206778849	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	1	206778849	206778849	G	T	SNP	EIF2D	ENST00000271764	human	ensembl	74_37	-1	known	missense	c.434	p.A145D	0.999	superfamily_PUA-like_domain,smart_PUA,pfscan_PUA	pfam_TIF_SUI1,superfamily_TIF_SUI1,superfamily_SWIB_MDM2_domain,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,pfscan_TIF_SUI1	-	no_errors	EIF2D	HGNC	ENSG00000143486	tier1	-	-	25	0	0.00	20	3	13.04
FAT2	0	genome.wustl.edu	37	5	150920164	150920164	+	Silent	SNP	G	G	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	5	150920164	150920164	G	C	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	silent	c.9003	p.V3001	0.860	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	tier1	-	-	43	0	0.00	30	7	18.92
FTCD	0	genome.wustl.edu	37	21	47575384	47575384	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	21	47575384	47575384	C	A	SNP	FTCD	ENST00000359679	human	ensembl	74_37	-1	known	missense	c.54	p.E18D	1.000	pfam_Formiminotransferase_N,superfamily_FormiminoTrfase_N/C_subdom,tigrfam_Formiminotransferase_cat	pfam_Formiminotransferase_N,pfam_Formiminotransferase_C,pfam_Cyclodeamin/CycHdrlase,superfamily_FormiminoTrfase_N/C_subdom,superfamily_Cyclodeamin/CycHdrlase,tigrfam_Formiminotransferase_cat	-	no_errors	FTCD	HGNC	ENSG00000160282	tier1	-	-	35	0	0.00	32	4	11.11
FMO2	0	genome.wustl.edu	37	1	171178127	171178127	+	RNA	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	1	171178127	171178127	C	T	SNP	FMO2	ENST00000529935	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	FMO2	HGNC	ENSG00000094963	tier1	-	-	65	0	0.00	44	4	8.33
RHAG	0	genome.wustl.edu	37	6	49604429	49604429	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	6	49604429	49604429	G	A	SNP	RHAG	ENST00000371175	human	ensembl	74_37	-1	known	missense	c.97	p.L33F	0.000	pfam_NH4_transpt_AmtB-like_dom	pfam_NH4_transpt_AmtB-like_dom,superfamily_NH4_transpt_AmtB-like_dom,prints_RhesusRHD	-	no_errors	RHAG	HGNC	ENSG00000112077	tier1	-	-	40	0	0.00	21	17	44.74
EP400	0	genome.wustl.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	12	132547087	132547087	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8283	p.Q2761	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	tier1	rs12366766	-	18	0	0.00	21	7	25.00
SLC39A3	0	genome.wustl.edu	37	19	2737421	2737421	+	RNA	DEL	T	T	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	19	2737421	2737421	T	-	DEL	SLC39A3	ENST00000590875	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.018	-	-	-	no_errors	SLC39A3	HGNC	ENSG00000141873	tier1			16	0	0.00	15	5	25.00
SMCR5	0	genome.wustl.edu	37	17	17682037	17682037	+	RNA	SNP	T	T	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	17	17682037	17682037	T	C	SNP	SMCR5	ENST00000543475	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SMCR5	HGNC	ENSG00000226746	tier1	-	-	64	0	0.00	24	7	22.58
OR1L6	0	genome.wustl.edu	37	9	125512914	125512914	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	9	125512914	125512914	C	T	SNP	OR1L6	ENST00000373684	human	ensembl	74_37	+1	known	missense	c.896	p.P299L	0.589	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1L6	HGNC	ENSG00000171459	tier1	-	-	59	0	0.00	63	22	25.88
EVX2	0	genome.wustl.edu	37	2	176945342	176945368	+	In_Frame_Del	DEL	AGCCGCGGCCGCCGCGCCTGAGGCTGC	AGCCGCGGCCGCCGCGCCTGAGGCTGC	-			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	AGCCGCGGCCGCCGCGCCTGAGGCTGC	AGCCGCGGCCGCCGCGCCTGAGGCTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	2	176945342	176945368	AGCCGCGGCCGCCGCGCCTGAGGCTGC	-	DEL	EVX2	ENST00000308618	human	ensembl	74_37	-1	known	in_frame_del	c.924_898	p.AASGAAAAA300in_frame_del	0.106:0.803:0.815:0.426:0.829:0.835:0.247:0.369:0.386:0.333:0.342:0.346:0.005:0.096:0.112:0.036:0.927:0.933:0.157:0.969:0.991:0.996:1.000:1.000:0.993:1.000:0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Antifreeze_1,prints_Homeobox_metazoa	-	no_errors	EVX2	HGNC	ENSG00000174279	tier1			NA	NA	NA	NA	NA	NA
EFCAB4B	0	genome.wustl.edu	37	12	3768815	3768815	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3UA-01A-12D-A307-09	TCGA-DX-A3UA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a853679a-0be7-4f37-900c-f8f028f590aa	224f10b3-a507-435c-bc6c-3fdd6dfb5a46	12	3768815	3768815	A	C	SNP	EFCAB4B	ENST00000440314	human	ensembl	74_37	-1	known	missense	c.677	p.I226S	0.992	NULL	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_EF_hand_dom,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,pfscan_EF_hand_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	EFCAB4B	HGNC	ENSG00000130038	tier1	-	-	39	0	0.00	18	24	57.14
