Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
KIAA1549	0	genome.wustl.edu	37	7	138596018	138596018	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	7	138596018	138596018	C	T	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.3019	p.V1007I	0.688	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	tier1	-	-	57	0	0.00	14	24	63.16
MYH16	0	genome.wustl.edu	37	7	98862800	98862800	+	RNA	SNP	T	T	C			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	7	98862800	98862800	T	C	SNP	MYH16	ENST00000425880	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MYH16	HGNC	ENSG00000002079	tier1	-	-	187	0	0.00	47	70	59.83
TIAL1	0	genome.wustl.edu	37	10	121337184	121337184	+	Silent	SNP	C	C	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	10	121337184	121337184	C	T	SNP	TIAL1	ENST00000369093	human	ensembl	74_37	-1	known	silent	c.672	p.V224	0.999	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIAL1	HGNC	ENSG00000151923	tier1	-	-	35	0	0.00	21	5	19.23
PNPLA3	0	genome.wustl.edu	37	22	44333049	44333049	+	Silent	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	22	44333049	44333049	G	A	SNP	PNPLA3	ENST00000216180	human	ensembl	74_37	+1	known	silent	c.876	p.L292	0.001	NULL	pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase	-	no_errors	PNPLA3	HGNC	ENSG00000100344	tier1	rs149395579	-	81	0	0.00	27	32	54.24
C19orf44	0	genome.wustl.edu	37	19	16620577	16620586	+	Frame_Shift_Del	DEL	GAAAACTCTC	GAAAACTCTC	-			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	GAAAACTCTC	GAAAACTCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	19	16620577	16620586	GAAAACTCTC	-	DEL	C19orf44	ENST00000221671	human	ensembl	74_37	+1	known	frame_shift_del	c.1417_1426	p.E473fs	0.852:0.769:0.114:0.003:0.000:0.000:0.003:0.003:0.000:0.000	NULL	NULL	-	no_errors	C19orf44	HGNC	ENSG00000105072	tier1			NA	NA	NA	NA	NA	NA
CD81	0	genome.wustl.edu	37	11	2407360	2407360	+	Silent	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	11	2407360	2407360	G	A	SNP	CD81	ENST00000381036	human	ensembl	74_37	+1	putative	silent	c.69	p.L23	0.000	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	CD81	HGNC	ENSG00000110651	tier1	-	-	93	0	0.00	55	31	36.05
GRM6	0	genome.wustl.edu	37	5	178413152	178413152	+	Silent	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	5	178413152	178413152	G	T	SNP	GRM6	ENST00000231188	human	ensembl	74_37	-1	known	silent	c.2103	p.T701	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM6	HGNC	ENSG00000113262	tier1	-	-	60	0	0.00	35	58	62.37
PSTPIP2	0	genome.wustl.edu	37	18	43573597	43573597	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	18	43573597	43573597	A	G	SNP	PSTPIP2	ENST00000409746	human	ensembl	74_37	-1	known	missense	c.715	p.S239P	1.000	NULL	pfam_FCH_dom,smart_FCH_dom,pfscan_FCH_dom	-	no_errors	PSTPIP2	HGNC	ENSG00000152229	tier1	-	-	38	0	0.00	11	8	42.11
FKBP6	0	genome.wustl.edu	37	7	72755324	72755324	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	7	72755324	72755324	C	T	SNP	FKBP6	ENST00000252037	human	ensembl	74_37	+1	known	missense	c.836	p.A279V	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_PPIase_FKBP_dom,smart_TPR_repeat,pfscan_TPR-contain_dom,pfscan_PPIase_FKBP_dom	-	no_errors	FKBP6	HGNC	ENSG00000077800	tier1	-	-	90	0	0.00	54	20	26.67
ENSG00000267045	0	genome.wustl.edu	37	19	45742155	45742155	+	RNA	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	19	45742155	45742155	G	A	SNP	ENSG00000267045	ENST00000590022	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.542	-	-	-	no_errors	AC006126.4	Clone_based_vega_gene	ENSG00000267045	tier1	-	-	63	0	0.00	28	9	24.32
ATRX	0	genome.wustl.edu	37	X	76939418	76939418	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	X	76939418	76939418	G	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	nonsense	c.1330	p.R444*	0.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	47	0	0.00	4	47	92.16
UNC79	0	genome.wustl.edu	37	14	94004450	94004450	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	14	94004450	94004450	G	C	SNP	UNC79	ENST00000553484	human	ensembl	74_37	+1	known	missense	c.1238	p.S413T	1.000	NULL	superfamily_P-loop_NTPase,superfamily_ARM-type_fold	-	no_errors	UNC79	HGNC	ENSG00000133958	tier1	-	-	27	0	0.00	15	11	42.31
CREM	0	genome.wustl.edu	37	10	35416094	35416094	+	RNA	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	10	35416094	35416094	G	T	SNP	CREM	ENST00000461968	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	CREM	HGNC	ENSG00000095794	tier1	-	-	178	0	0.00	101	28	21.71
AP3B2	0	genome.wustl.edu	37	15	83357916	83357916	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	15	83357916	83357916	G	T	SNP	AP3B2	ENST00000261722	human	ensembl	74_37	-1	known	missense	c.258	p.N86K	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP3_beta	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,pirsf_AP3_beta	-	no_errors	AP3B2	HGNC	ENSG00000103723	tier1	-	-	50	0	0.00	20	6	23.08
C1orf105	0	genome.wustl.edu	37	1	172425565	172425565	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	1	172425565	172425565	A	T	SNP	C1orf105	ENST00000367727	human	ensembl	74_37	+1	known	missense	c.209	p.N70I	0.008	NULL	NULL	-	no_errors	C1orf105	HGNC	ENSG00000180999	tier1	-	-	77	0	0.00	117	20	14.60
GTF2IRD2P1	0	genome.wustl.edu	37	7	72664015	72664016	+	RNA	INS	-	-	G			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	7	72664015	72664016	-	G	INS	GTF2IRD2P1	ENST00000425256	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.912:0.964	-	-	-	no_errors	GTF2IRD2P1	HGNC	ENSG00000214544	tier1			17	0	0.00	7	3	30.00
SHC4	0	genome.wustl.edu	37	15	49176558	49176558	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	15	49176558	49176558	C	T	SNP	SHC4	ENST00000332408	human	ensembl	74_37	-1	known	missense	c.727	p.V243I	1.000	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_SH2,smart_PTB/PI_dom,smart_SH2,pfscan_PTB/PI_dom,pfscan_SH2,prints_PID_Shc-like,prints_SH2	-	no_errors	SHC4	HGNC	ENSG00000185634	tier1	-	-	41	0	0.00	34	11	24.44
LAMA1	0	genome.wustl.edu	37	18	7026019	7026019	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	18	7026019	7026019	G	T	SNP	LAMA1	ENST00000389658	human	ensembl	74_37	-1	known	missense	c.2361	p.D787E	1.000	pfam_EGF_laminin,smart_EGF_laminin,smart_EG-like_dom,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	tier1	-	-	48	0	0.00	22	10	31.25
BCAS3	0	genome.wustl.edu	37	17	58979998	58979998	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	17	58979998	58979998	G	T	SNP	BCAS3	ENST00000390652	human	ensembl	74_37	+1	known	missense	c.756	p.Q252H	1.000	NULL	pfam_BCAS3,pfam_WD40_repeat	-	no_errors	BCAS3	HGNC	ENSG00000141376	tier1	-	-	36	0	0.00	30	4	11.76
PANK1	0	genome.wustl.edu	37	10	91398993	91398993	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	10	91398993	91398993	G	C	SNP	PANK1	ENST00000371774	human	ensembl	74_37	-1	known	missense	c.22	p.L8V	0.014	NULL	pfam_Type_II_PanK,tigrfam_Type_II_PanK	-	no_errors	PANK1	HGNC	ENSG00000152782	tier1	-	-	13	0	0.00	4	10	71.43
MUC20	0	genome.wustl.edu	37	3	195453048	195453053	+	In_Frame_Del	DEL	TTAGCA	TTAGCA	-			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	TTAGCA	TTAGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	3	195453048	195453053	TTAGCA	-	DEL	MUC20	ENST00000447234	human	ensembl	74_37	+1	known	in_frame_del	c.1574_1579	p.VSR525in_frame_delG	0.000:0.000:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors	MUC20	HGNC	ENSG00000176945	tier1			NA	NA	NA	NA	NA	NA
DAGLB	0	genome.wustl.edu	37	7	6487537	6487537	+	RNA	SNP	G	G	C			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	7	6487537	6487537	G	C	SNP	DAGLB	ENST00000479922	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DAGLB	HGNC	ENSG00000164535	tier1	-	-	33	0	0.00	4	16	80.00
CAPN8	0	genome.wustl.edu	37	1	223805977	223805977	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	1	223805977	223805977	G	C	SNP	CAPN8	ENST00000366873	human	ensembl	74_37	-1	novel	missense	c.1142	p.S381C	1.000	prints_Calpain_cysteine_protease	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN8	HGNC	ENSG00000203697	tier1	-	-	55	0	0.00	92	11	10.68
RGS17	0	genome.wustl.edu	37	6	153365122	153365122	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	6	153365122	153365122	C	T	SNP	RGS17	ENST00000206262	human	ensembl	74_37	-1	known	missense	c.32	p.G11E	1.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam,prints_RGS_dom	-	no_errors	RGS17	HGNC	ENSG00000091844	tier1	-	-	64	0	0.00	53	10	15.87
ENSG00000229334	0	genome.wustl.edu	37	3	194353772	194353773	+	RNA	INS	-	-	CCGCCCGACAG			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	3	194353772	194353773	-	CCGCCCGACAG	INS	ENSG00000229334	ENST00000447139	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.030:0.049	-	-	-	no_errors	AC046143.3	Clone_based_vega_gene	ENSG00000229334	tier1			NA	NA	NA	NA	NA	NA
SGSM1	0	genome.wustl.edu	37	22	25251313	25251313	+	Silent	SNP	C	C	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	22	25251313	25251313	C	T	SNP	SGSM1	ENST00000400359	human	ensembl	74_37	+1	known	silent	c.585	p.P195	0.987	NULL	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM1	HGNC	ENSG00000167037	tier1	-	-	40	0	0.00	19	6	24.00
DPH1	0	genome.wustl.edu	37	17	1939349	1939349	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	17	1939349	1939349	G	T	SNP	DPH1	ENST00000263083	human	ensembl	74_37	+1	known	missense	c.379	p.A127S	0.998	pfam_DPH1/DPH2,pirsf_DPH1_eu/DPH2_arc,tigrfam_DPH1/DPH2	pfam_DPH1/DPH2,pirsf_DPH1_eu/DPH2_arc,tigrfam_DPH1/DPH2	-	no_errors	DPH1	HGNC	ENSG00000108963	tier1	-	-	102	0	0.00	56	41	41.84
PAPD5	0	genome.wustl.edu	37	16	50264686	50264686	+	RNA	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	16	50264686	50264686	G	A	SNP	PAPD5	ENST00000573002	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PAPD5	HGNC	ENSG00000121274	tier1	-	-	66	0	0.00	47	13	21.67
PLEKHA7	0	genome.wustl.edu	37	11	16805332	16805332	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	11	16805332	16805332	C	G	SNP	PLEKHA7	ENST00000531066	human	ensembl	74_37	-1	putative	missense	c.3565	p.D1189H	1.000	NULL	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689	tier1	-	-	110	0	0.00	38	19	33.33
KIAA0040	0	genome.wustl.edu	37	1	175129948	175129955	+	Frame_Shift_Del	DEL	TCTTCTTG	TCTTCTTG	-			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	TCTTCTTG	TCTTCTTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	1	175129948	175129955	TCTTCTTG	-	DEL	KIAA0040	ENST00000423313	human	ensembl	74_37	-1	known	frame_shift_del	c.202_195	p.N65fs	0.979:0.335:0.011:0.006:0.005:0.014:0.019:0.212	NULL	NULL	-	no_errors	KIAA0040	HGNC	ENSG00000235750	tier1			NA	NA	NA	NA	NA	NA
KIT	0	genome.wustl.edu	37	4	55599285	55599285	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	4	55599285	55599285	G	A	SNP	KIT	ENST00000288135	human	ensembl	74_37	+1	known	missense	c.2411	p.R804Q	1.000	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_CSF1/PDGF_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	KIT	HGNC	ENSG00000157404	tier1	-	-	98	0	0.00	22	35	61.40
OSCAR	0	genome.wustl.edu	37	19	54598510	54598510	+	Silent	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	19	54598510	54598510	G	A	SNP	OSCAR	ENST00000356532	human	ensembl	74_37	-1	known	silent	c.780	p.R260	0.000	NULL	smart_Ig_sub	-	no_errors	OSCAR	HGNC	ENSG00000170909	tier1	-	-	97	0	0.00	34	14	29.17
DNAJB8-AS1	0	genome.wustl.edu	37	3	128182759	128182759	+	RNA	SNP	T	T	G			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	3	128182759	128182759	T	G	SNP	DNAJB8-AS1	ENST00000471626	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DNAJB8-AS1	HGNC	ENSG00000242049	tier1	-	-	41	0	0.00	17	16	48.48
MCCC1	0	genome.wustl.edu	37	3	182759436	182759436	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	3	182759436	182759436	T	C	SNP	MCCC1	ENST00000265594	human	ensembl	74_37	-1	known	missense	c.1186	p.M396V	1.000	pfam_Biotin_COase_C,superfamily_Rudment_hybrid_motif,smart_Biotin_COase_C,pfscan_Biotin_carboxylation_dom	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_DUF201-type,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	MCCC1	HGNC	ENSG00000078070	tier1	-	-	139	0	0.00	52	45	46.39
GRAP2	0	genome.wustl.edu	37	22	40364152	40364153	+	Frame_Shift_Ins	INS	-	-	C			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	22	40364152	40364153	-	C	INS	GRAP2	ENST00000344138	human	ensembl	74_37	+1	known	frame_shift_ins	c.566_567	p.T192fs	0.872:0.397	NULL	pfam_SH3_domain,pfam_SH2,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,pfscan_SH2,pfscan_SH3_domain,prints_SH2,prints_SH3_domain	-	no_errors	GRAP2	HGNC	ENSG00000100351	tier1			83	0	0.00	46	33	41.77
ACTA2	0	genome.wustl.edu	37	10	90708478	90708481	+	RNA	DEL	AGAT	AGAT	-			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	AGAT	AGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	10	90708478	90708481	AGAT	-	DEL	ACTA2	ENST00000482085	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.001:0.000	-	-	-	no_errors	ACTA2	HGNC	ENSG00000107796	tier1			59	0	0.00	22	27	55.10
LOC101927806	0	genome.wustl.edu	37	1	17198882	17198882	+	RNA	SNP	C	C	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	1	17198882	17198882	C	T	SNP	LOC101927806	ENST00000438002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	U1	RFAM	ENSG00000228549	tier1	rs7367174	-	16	0	0.00	21	8	27.59
N4BP2L2	0	genome.wustl.edu	37	13	33101459	33101459	+	RNA	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	13	33101459	33101459	G	T	SNP	N4BP2L2	ENST00000512755	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.509	-	-	-	no_errors	N4BP2L2	HGNC	ENSG00000244754	tier1	-	-	22	0	0.00	11	3	21.43
SCN5A	0	genome.wustl.edu	37	3	38601865	38601865	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	3	38601865	38601865	C	T	SNP	SCN5A	ENST00000333535	human	ensembl	74_37	-1	known	missense	c.4018	p.V1340I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,prints_Na_channel_a5su,prints_Na_channel_asu	-	no_errors	SCN5A	HGNC	ENSG00000183873	tier1	rs199473605	-	56	0	0.00	34	10	22.73
ENSG00000263272	0	genome.wustl.edu	37	17	5334805	5334805	+	RNA	DEL	A	A	-			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	17	5334805	5334805	A	-	DEL	ENSG00000263272	ENST00000575890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	CTC-524C5.2	Clone_based_vega_gene	ENSG00000263272	tier1			27	0	0.00	25	3	10.71
TMCC2	0	genome.wustl.edu	37	1	205225428	205225428	+	RNA	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	1	205225428	205225428	G	T	SNP	TMCC2	ENST00000468846	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMCC2	HGNC	ENSG00000133069	tier1	-	-	33	0	0.00	46	8	14.81
CAMTA1	0	genome.wustl.edu	37	1	6885151	6885151	+	Splice_Site	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	1	6885151	6885151	G	A	SNP	CAMTA1	ENST00000303635	human	ensembl	74_37	+1	known	splice_site	c.116-1	e3-1	1.000	-	-	-	no_errors	CAMTA1	HGNC	ENSG00000171735	tier1	-	-	44	0	0.00	18	25	58.14
KRTAP10-1	0	genome.wustl.edu	37	21	45959750	45959750	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	21	45959750	45959750	C	G	SNP	KRTAP10-1	ENST00000400375	human	ensembl	74_37	-1	known	missense	c.284	p.C95S	0.996	NULL	NULL	-	no_errors	KRTAP10-1	HGNC	ENSG00000215455	tier1	-	-	181	0	0.00	114	43	27.39
MIR663B	0	genome.wustl.edu	37	2	133014557	133014557	+	RNA	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	2	133014557	133014557	G	A	SNP	MIR663B	ENST00000408361	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.067	-	-	-	no_errors	MIR663B	HGNC	ENSG00000221288	tier1	-	-	141	1	0.70	98	11	10.09
DSG3	0	genome.wustl.edu	37	18	29040795	29040795	+	Splice_Site	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	18	29040795	29040795	G	T	SNP	DSG3	ENST00000257189	human	ensembl	74_37	+1	known	splice_site	c.685-1	e7-1	1.000	-	-	-	no_errors	DSG3	HGNC	ENSG00000134757	tier1	-	-	66	0	0.00	39	42	51.85
FAM57A	0	genome.wustl.edu	37	17	636266	636267	+	Frame_Shift_Ins	INS	-	-	GGGCC			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	17	636266	636267	-	GGGCC	INS	FAM57A	ENST00000574327	human	ensembl	74_37	+1	known	frame_shift_ins	c.379_380	p.P131fs	0.000:0.000	NULL	NULL	-	no_errors	FAM57A	HGNC	ENSG00000167695	tier1			NA	NA	NA	NA	NA	NA
NCOA1	0	genome.wustl.edu	37	2	24888732	24888732	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	2	24888732	24888732	G	T	SNP	NCOA1	ENST00000348332	human	ensembl	74_37	+1	known	missense	c.204	p.K68N	1.000	superfamily_bHLH_dom,smart_bHLH_dom,pirsf_Nuclear_rcpt_coactivator,pfscan_bHLH_dom	pfam_DUF1518,pfam_SRC-1,pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA1	HGNC	ENSG00000084676	tier1	-	-	42	0	0.00	15	3	16.67
PRX	0	genome.wustl.edu	37	19	40913828	40913828	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	19	40913828	40913828	C	-	DEL	PRX	ENST00000324001	human	ensembl	74_37	-1	known	frame_shift_del	c.12	p.S5fs	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PRX	HGNC	ENSG00000105227	tier1			49	0	0.00	13	2	13.33
PRKCI	0	genome.wustl.edu	37	3	169988342	169988342	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	3	169988342	169988342	T	A	SNP	PRKCI	ENST00000295797	human	ensembl	74_37	+1	known	nonsense	c.584	p.L195*	1.000	pirsf_PKC_zeta	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_OPR_PB1,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_OPR_PB1,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_PKC_zeta,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCI	HGNC	ENSG00000163558	tier1	-	-	19	0	0.00	11	3	21.43
CDCA2	0	genome.wustl.edu	37	8	25364178	25364178	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	8	25364178	25364178	T	C	SNP	CDCA2	ENST00000330560	human	ensembl	74_37	+1	known	missense	c.1996	p.S666P	0.000	NULL	NULL	-	no_errors	CDCA2	HGNC	ENSG00000184661	tier1	-	-	53	0	0.00	24	20	45.45
PPFIBP1	0	genome.wustl.edu	37	12	27820219	27820219	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	12	27820219	27820219	G	T	SNP	PPFIBP1	ENST00000318304	human	ensembl	74_37	+1	known	missense	c.1163	p.S388I	0.348	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIBP1	HGNC	ENSG00000110841	tier1	-	-	73	0	0.00	28	4	12.50
PAPD5	0	genome.wustl.edu	37	16	50264680	50264680	+	RNA	SNP	G	G	A			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	16	50264680	50264680	G	A	SNP	PAPD5	ENST00000573002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.994	-	-	-	no_errors	PAPD5	HGNC	ENSG00000121274	tier1	-	-	63	0	0.00	48	17	26.15
SCARNA12	0	genome.wustl.edu	37	12	7076739	7076739	+	RNA	SNP	G	G	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	12	7076739	7076739	G	T	SNP	SCARNA12	ENST00000459155	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.033	-	-	-	no_errors	SCARNA12	HGNC	ENSG00000238795	tier1	-	-	31	0	0.00	12	3	20.00
OR2F2	0	genome.wustl.edu	37	7	143632973	143632973	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	7	143632973	143632973	G	C	SNP	OR2F2	ENST00000408955	human	ensembl	74_37	+1	known	missense	c.648	p.L216F	0.019	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2F2	HGNC	ENSG00000221910	tier1	-	-	111	0	0.00	43	21	32.81
MTMR14	0	genome.wustl.edu	37	3	9743521	9743521	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	3	9743521	9743521	C	T	SNP	MTMR14	ENST00000296003	human	ensembl	74_37	+1	known	missense	c.1817	p.S606L	0.979	NULL	NULL	-	no_errors	MTMR14	HGNC	ENSG00000163719	tier1	-	-	91	0	0.00	80	20	19.80
CIDEA	0	genome.wustl.edu	37	18	12254562	12254563	+	Frame_Shift_Ins	INS	-	-	CCGCGCACACACCCAT			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	18	12254562	12254563	-	CCGCGCACACACCCAT	INS	CIDEA	ENST00000522713	human	ensembl	74_37	+1	known	frame_shift_ins	c.180_181	p.H64fs	0.077:0.122	NULL	NULL	-	no_errors	CIDEA	HGNC	ENSG00000176194	tier1			NA	NA	NA	NA	NA	NA
ENSG00000223063	0	genome.wustl.edu	37	6	35668845	35668845	+	RNA	SNP	A	A	G			TCGA-DX-A3UD-01A-11D-A307-09	TCGA-DX-A3UD-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	a46b055d-5534-4c00-85b6-a15ba4d62613	c788ed6d-2b8e-49ef-bef0-c44ee15b4d4c	6	35668845	35668845	A	G	SNP	ENSG00000223063	ENST00000411131	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.066	-	-	-	no_errors	AL157823.1	Clone_based_ensembl_gene	ENSG00000223063	tier1	-	-	108	0	0.00	69	55	44.35
