Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RAB9B	0	genome.wustl.edu	37	X	103080663	103080663	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	X	103080663	103080663	C	A	SNP	RAB9B	ENST00000243298	human	ensembl	74_37	-1	known	missense	c.52	p.V18F	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9B	HGNC	ENSG00000123570	tier1	-	-	30	0	0.00	39	22	36.07
LOC101927601	0	genome.wustl.edu	37	15	82637334	82637334	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	15	82637334	82637334	T	C	SNP	LOC101927601	ENST00000439287	human	ensembl	74_37	-1	known	missense	c.752	p.H251R	0.000	NULL	NULL	-	no_errors	GOLGA6L10	Uniprot_gn	ENSG00000205281	tier1	rs77281226	-	17	0	0.00	26	7	21.21
OTOL1	0	genome.wustl.edu	37	3	161214858	161214858	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	3	161214858	161214858	A	G	SNP	OTOL1	ENST00000327928	human	ensembl	74_37	+1	known	missense	c.263	p.E88G	0.998	NULL	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	OTOL1	HGNC	ENSG00000182447	tier1	-	-	131	0	0.00	93	72	43.64
FLG2	0	genome.wustl.edu	37	1	152330046	152330046	+	Silent	SNP	A	A	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	1	152330046	152330046	A	C	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	silent	c.216	p.T72	0.992	pfscan_EF_hand_dom	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	tier1	-	-	34	0	0.00	46	30	39.47
TP53	0	genome.wustl.edu	37	17	7577152	7577154	+	In_Frame_Del	DEL	ACC	ACC	-			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	ACC	ACC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	17	7577152	7577154	ACC	-	DEL	TP53	ENST00000269305	human	ensembl	74_37	-1	known	in_frame_del	c.786_784	p.G262in_frame_del	0.004:1.000:1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1			16	0	0.00	4	12	75.00
ANP32E	0	genome.wustl.edu	37	1	150199040	150199045	+	In_Frame_Del	DEL	TCCTCT	TCCTCT	-			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	TCCTCT	TCCTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	1	150199040	150199045	TCCTCT	-	DEL	ANP32E	ENST00000314136	human	ensembl	74_37	-1	known	in_frame_del	c.581_576	p.EE193in_frame_del	0.001:0.006:0.000:0.058:0.106:0.091	NULL	pfam_Leu-rich_rpt	-	no_errors	ANP32E	HGNC	ENSG00000143401	tier1			NA	NA	NA	NA	NA	NA
SPATA31D1	0	genome.wustl.edu	37	9	84608855	84608855	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	9	84608855	84608855	C	T	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.3470	p.T1157I	0.003	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929	tier1	-	-	45	0	0.00	54	46	46.00
AKAP13	0	genome.wustl.edu	37	15	86118421	86118421	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	15	86118421	86118421	A	G	SNP	AKAP13	ENST00000361243	human	ensembl	74_37	+1	known	missense	c.722	p.D241G	0.999	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	AKAP13	HGNC	ENSG00000170776	tier1	-	-	43	0	0.00	57	38	40.00
TMTC1	0	genome.wustl.edu	37	12	29669380	29669380	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	12	29669380	29669380	C	T	SNP	TMTC1	ENST00000256062	human	ensembl	74_37	-1	known	missense	c.1885	p.E629K	1.000	pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,pfam_DUF1736,pfam_PIK-rel_kinase_FAT,pfam_TPR-3,smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC1	HGNC	ENSG00000133687	tier1	-	-	19	0	0.00	41	17	29.31
MRC1	0	genome.wustl.edu	37	10	18122792	18122792	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	10	18122792	18122792	G	A	SNP	MRC1	ENST00000239761	human	ensembl	74_37	+1	known	missense	c.802	p.G268R	1.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,pfam_Ricin_B_lectin,pfam_Herpes_UL45-like,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin,prints_AntifreezeII	-	no_errors	MRC1	HGNC	ENSG00000120586	tier1	-	-	29	0	0.00	1	28	96.55
MAG	0	genome.wustl.edu	37	19	35793405	35793405	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	19	35793405	35793405	C	T	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	missense	c.1025	p.T342M	0.863	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695	tier1	rs199924214	-	27	0	0.00	24	26	52.00
FAM47C	0	genome.wustl.edu	37	X	37028799	37028799	+	Silent	SNP	C	C	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	X	37028799	37028799	C	A	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	silent	c.2316	p.S772	0.059	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	tier1	-	-	131	0	0.00	155	172	52.28
UBA2	0	genome.wustl.edu	37	19	34949766	34949766	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	19	34949766	34949766	C	G	SNP	UBA2	ENST00000246548	human	ensembl	74_37	+1	known	missense	c.1338	p.S446R	1.000	superfamily_Molybdenum_cofac_synth_MoeB	pfam_ThiF_NAD_FAD-bd,pfam_UBact_repeat,pfam_Ubiquitin-activating_enzyme,superfamily_Molybdenum_cofac_synth_MoeB	-	no_errors	UBA2	HGNC	ENSG00000126261	tier1	-	-	43	0	0.00	36	17	32.08
PLG	0	genome.wustl.edu	37	6	161134199	161134199	+	RNA	SNP	A	A	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	6	161134199	161134199	A	C	SNP	PLG	ENST00000462918	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLG	HGNC	ENSG00000122194	tier1	-	-	63	0	0.00	58	37	38.95
VIPR1	0	genome.wustl.edu	37	3	42573303	42573303	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	3	42573303	42573303	A	G	SNP	VIPR1	ENST00000325123	human	ensembl	74_37	+1	known	missense	c.860	p.D287G	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_VIP_rcpt_1,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt	-	no_errors	VIPR1	HGNC	ENSG00000114812	tier1	-	-	49	0	0.00	38	28	41.79
AARS2	0	genome.wustl.edu	37	6	44278041	44278041	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	6	44278041	44278041	G	A	SNP	AARS2	ENST00000244571	human	ensembl	74_37	-1	known	nonsense	c.889	p.Q297*	1.000	pfam_Ala-tRNA-synth_IIc_N,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-ligase_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-lgiase_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-lgiase_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608	tier1	-	-	22	0	0.00	49	32	39.51
ACSL6	0	genome.wustl.edu	37	5	131305834	131305834	+	Silent	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	5	131305834	131305834	G	A	SNP	ACSL6	ENST00000296869	human	ensembl	74_37	-1	known	silent	c.1494	p.G498	0.999	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398	tier1	rs138919958	-	39	0	0.00	43	31	41.33
CUBN	0	genome.wustl.edu	37	10	16873360	16873360	+	Silent	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	10	16873360	16873360	C	T	SNP	CUBN	ENST00000377833	human	ensembl	74_37	-1	known	silent	c.10419	p.L3473	0.939	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_CUB_dom,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	tier1	-	-	28	0	0.00	45	23	33.82
MIR525	0	genome.wustl.edu	37	19	54200859	54200859	+	RNA	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	19	54200859	54200859	G	A	SNP	MIR525	ENST00000384978	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	MIR525	HGNC	ENSG00000207711	tier1	-	-	67	0	0.00	57	58	50.43
FLJ20444	0	genome.wustl.edu	37	9	66513513	66513513	+	RNA	SNP	C	C	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	9	66513513	66513513	C	A	SNP	FLJ20444	ENST00000586625	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-262H14.3	Clone_based_vega_gene	ENSG00000234665	tier1	rs201075544	-	42	0	0.00	102	9	8.11
ENSG00000266651	0	genome.wustl.edu	37	17	16344167	16344167	+	RNA	DEL	A	A	-			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	17	16344167	16344167	A	-	DEL	ENSG00000266651	ENST00000585048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-138I1.3	Clone_based_vega_gene	ENSG00000266651	tier1			9	0	0.00	10	7	41.18
PCDHGB8P	0	genome.wustl.edu	37	5	140807667	140807667	+	RNA	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	5	140807667	140807667	G	A	SNP	PCDHGB8P	ENST00000502926	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.970	-	-	-	no_errors	PCDHGB8P	HGNC	ENSG00000248449	tier1	-	-	59	0	0.00	69	70	50.36
NCOR2	0	genome.wustl.edu	37	12	124832774	124832774	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	12	124832774	124832774	A	T	SNP	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	missense	c.3952	p.Y1318N	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	tier1	-	-	48	0	0.00	107	12	10.08
MLIP	0	genome.wustl.edu	37	6	53986337	53986337	+	Silent	SNP	C	C	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	6	53986337	53986337	C	G	SNP	MLIP	ENST00000274897	human	ensembl	74_37	+1	known	silent	c.156	p.T52	1.000	NULL	NULL	-	no_errors	MLIP	HGNC	ENSG00000146147	tier1	-	-	33	0	0.00	30	21	41.18
MYF6	0	genome.wustl.edu	37	12	81102319	81102319	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	12	81102319	81102319	T	A	SNP	MYF6	ENST00000228641	human	ensembl	74_37	+1	known	missense	c.536	p.F179Y	1.000	NULL	pfam_Basic,pfam_bHLH_dom,superfamily_bHLH_dom,smart_Basic,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MYF6	HGNC	ENSG00000111046	tier1	-	-	74	0	0.00	72	44	37.93
PLIN2	0	genome.wustl.edu	37	9	19116354	19116354	+	Silent	SNP	T	T	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	9	19116354	19116354	T	C	SNP	PLIN2	ENST00000276914	human	ensembl	74_37	-1	known	silent	c.1206	p.V402	1.000	pirsf_Perilipin	pfam_Perilipin,pirsf_Perilipin	-	no_errors	PLIN2	HGNC	ENSG00000147872	tier1	-	-	74	0	0.00	75	67	47.18
MYH4	0	genome.wustl.edu	37	17	10355349	10355349	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	17	10355349	10355349	C	T	SNP	MYH4	ENST00000255381	human	ensembl	74_37	-1	known	missense	c.3647	p.R1216Q	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC	ENSG00000264424	tier1	-	-	50	0	0.00	107	53	33.12
ENSG00000228120	0	genome.wustl.edu	37	21	44579697	44579697	+	Silent	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	21	44579697	44579697	G	A	SNP	ENSG00000228120	ENST00000433840	human	ensembl	74_37	-1	putative	silent	c.345	p.N115	0.063	NULL	NULL	-	no_errors	AP001631.10	Clone_based_vega_gene	ENSG00000228120	tier1	-	-	66	0	0.00	70	52	42.62
ADAMTSL3	0	genome.wustl.edu	37	15	84611788	84611788	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	15	84611788	84611788	C	T	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	missense	c.2444	p.A815V	0.996	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	tier1	-	-	33	0	0.00	45	4	8.16
THOC2	0	genome.wustl.edu	37	X	122756709	122756709	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	X	122756709	122756709	T	G	SNP	THOC2	ENST00000245838	human	ensembl	74_37	-1	known	missense	c.3685	p.K1229Q	1.000	NULL	pfam_THO_THOC2_C,pfam_THO_THOC2_N	-	no_errors	THOC2	HGNC	ENSG00000125676	tier1	-	-	51	0	0.00	47	46	49.46
ANAPC2	0	genome.wustl.edu	37	9	140070253	140070253	+	Silent	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	9	140070253	140070253	G	A	SNP	ANAPC2	ENST00000323927	human	ensembl	74_37	-1	known	silent	c.1927	p.L643	0.998	pfam_Cullin_N,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	pfam_Cullin_N,pfam_APC_su2_C,superfamily_Cullin_homology,smart_Cullin_homology,pfscan_Cullin_homology	-	no_errors	ANAPC2	HGNC	ENSG00000176248	tier1	-	-	54	0	0.00	63	47	42.73
ENSG00000265002	0	genome.wustl.edu	37	15	20563408	20563417	+	RNA	DEL	CCTCTCCCTT	CCTCTCCCTT	-			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	CCTCTCCCTT	CCTCTCCCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	15	20563408	20563417	CCTCTCCCTT	-	DEL	ENSG00000265002	ENST00000581090	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.055:0.047:0.032:0.034:0.033:0.036:0.075:0.098:0.111:0.132	-	-	-	no_errors	AC026495.1	Clone_based_ensembl_gene	ENSG00000265002	tier1			NA	NA	NA	NA	NA	NA
PCNXL2	0	genome.wustl.edu	37	1	233122167	233122167	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	1	233122167	233122167	T	C	SNP	PCNXL2	ENST00000258229	human	ensembl	74_37	-1	known	missense	c.5911	p.T1971A	0.935	NULL	pfam_Pecanex,superfamily_Trypsin-like_Pept_dom	-	no_errors	PCNXL2	HGNC	ENSG00000135749	tier1	-	-	40	0	0.00	68	33	32.35
ILF2	0	genome.wustl.edu	37	1	153634783	153634783	+	RNA	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	1	153634783	153634783	C	T	SNP	ILF2	ENST00000480213	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.419	-	-	-	no_errors	ILF2	HGNC	ENSG00000143621	tier1	-	-	37	0	0.00	55	7	11.29
FOXD4L3	0	genome.wustl.edu	37	9	70918571	70918571	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	9	70918571	70918571	C	G	SNP	FOXD4L3	ENST00000342833	human	ensembl	74_37	+1	known	missense	c.704	p.P235R	0.536	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L3	HGNC	ENSG00000187559	tier1	-	-	36	0	0.00	50	8	13.79
SCML2	0	genome.wustl.edu	37	X	18257532	18257532	+	RNA	SNP	T	T	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	X	18257532	18257532	T	A	SNP	SCML2	ENST00000491988	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.979	-	-	-	no_errors	SCML2	HGNC	ENSG00000102098	tier1	-	-	42	0	0.00	32	48	60.00
SNAPC4	0	genome.wustl.edu	37	9	139275295	139275295	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	9	139275295	139275295	T	C	SNP	SNAPC4	ENST00000298532	human	ensembl	74_37	-1	known	missense	c.2396	p.H799R	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	SNAPC4	HGNC	ENSG00000165684	tier1	-	-	76	0	0.00	63	58	47.93
SLC9A9	0	genome.wustl.edu	37	3	143297459	143297459	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	3	143297459	143297459	T	C	SNP	SLC9A9	ENST00000316549	human	ensembl	74_37	-1	known	missense	c.862	p.M288V	0.993	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_6,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A9	HGNC	ENSG00000181804	tier1	-	-	22	0	0.00	35	26	42.62
LOR	0	genome.wustl.edu	37	1	153233506	153233506	+	Silent	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	1	153233506	153233506	C	T	SNP	LOR	ENST00000368742	human	ensembl	74_37	+1	known	silent	c.81	p.G27	0.000	NULL	NULL	-	no_errors	LOR	HGNC	ENSG00000203782	tier1	-	-	17	0	0.00	11	6	35.29
SLC15A1	0	genome.wustl.edu	37	13	99340755	99340755	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	13	99340755	99340755	C	A	SNP	SLC15A1	ENST00000376503	human	ensembl	74_37	-1	known	missense	c.1543	p.A515S	0.995	superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	-	no_errors	SLC15A1	HGNC	ENSG00000088386	tier1	-	-	82	0	0.00	62	47	43.12
ZDHHC11B	0	genome.wustl.edu	37	5	733873	733873	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	5	733873	733873	C	A	SNP	ZDHHC11B	ENST00000382776	human	ensembl	74_37	-1	known	missense	c.1017	p.K339N	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11B	HGNC	ENSG00000206077	tier1	-	-	25	0	0.00	17	9	34.62
BTK	0	genome.wustl.edu	37	X	100615557	100615557	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	X	100615557	100615557	C	G	SNP	BTK	ENST00000308731	human	ensembl	74_37	-1	known	missense	c.775	p.G259R	1.000	pfam_SH3_domain,pfam_SH3_2,smart_SH3_domain,pfscan_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_Znf_Btk_motif,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_Znf_Btk_motif,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Znf_Btk_motif,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH3_domain,prints_SH2,prints_Znf_Btk_motif	-	no_errors	BTK	HGNC	ENSG00000010671	tier1	-	-	26	0	0.00	24	26	52.00
GOLGA8EP	0	genome.wustl.edu	37	15	23437006	23437006	+	RNA	SNP	A	A	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	15	23437006	23437006	A	T	SNP	GOLGA8EP	ENST00000526079	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.574	-	-	-	no_errors	GOLGA8EP	HGNC	ENSG00000175676	tier1	-	-	26	0	0.00	12	44	78.57
UGT1A5	0	genome.wustl.edu	37	2	234622417	234622417	+	Silent	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	2	234622417	234622417	C	T	SNP	UGT1A5	ENST00000373414	human	ensembl	74_37	+1	known	silent	c.780	p.D260	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT1A5	HGNC	ENSG00000240224	tier1	-	-	75	0	0.00	103	63	37.95
VTI1A	0	genome.wustl.edu	37	10	114286971	114286971	+	RNA	SNP	A	A	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	10	114286971	114286971	A	C	SNP	VTI1A	ENST00000480057	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	VTI1A	HGNC	ENSG00000151532	tier1	-	-	16	0	0.00	14	6	30.00
CES3	0	genome.wustl.edu	37	16	66998569	66998569	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	16	66998569	66998569	C	A	SNP	CES3	ENST00000303334	human	ensembl	74_37	+1	known	missense	c.758	p.T253K	0.002	pfam_CarbesteraseB	pfam_CarbesteraseB,pfam_AB_hydrolase_3	-	no_errors	CES3	HGNC	ENSG00000172828	tier1	-	-	54	0	0.00	63	45	41.67
PPP5C	0	genome.wustl.edu	37	19	46891839	46891839	+	Silent	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	19	46891839	46891839	G	A	SNP	PPP5C	ENST00000012443	human	ensembl	74_37	+1	known	silent	c.1206	p.V402	1.000	pfam_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5	pfam_PEstase_dom,pfam_PPP_dom,pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,smart_Ser/Thr-sp_prot-phosphatase,pirsf_Ser/Thr_PPase_5,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP5C	HGNC	ENSG00000011485	tier1	-	-	34	0	0.00	60	45	42.86
TUBA4A	0	genome.wustl.edu	37	2	220116779	220116779	+	Silent	SNP	T	T	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	2	220116779	220116779	T	C	SNP	TUBA4A	ENST00000248437	human	ensembl	74_37	-1	known	silent	c.177	p.G59	0.987	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin,prints_Delta_tubulin	-	no_errors	TUBA4A	HGNC	ENSG00000127824	tier1	-	-	47	0	0.00	42	37	46.84
TGIF1	0	genome.wustl.edu	37	18	3457483	3457483	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	18	3457483	3457483	T	C	SNP	TGIF1	ENST00000330513	human	ensembl	74_37	+1	known	missense	c.751	p.S251P	0.997	pfam_Homeobox_KN_domain	pfam_Homeobox_KN_domain,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TGIF1	HGNC	ENSG00000177426	tier1	-	-	44	0	0.00	26	47	64.38
ZBTB43	0	genome.wustl.edu	37	9	129598673	129598673	+	RNA	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	9	129598673	129598673	G	A	SNP	ZBTB43	ENST00000497064	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ZBTB43	HGNC	ENSG00000169155	tier1	-	-	21	0	0.00	37	6	13.95
ALG11	0	genome.wustl.edu	37	13	52602658	52602658	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	13	52602658	52602658	G	T	SNP	ALG11	ENST00000521508	human	ensembl	74_37	+1	known	missense	c.1411	p.V471L	0.979	NULL	pfam_Glyco_trans_1	-	no_errors	ALG11	HGNC	ENSG00000253710	tier1	-	-	29	0	0.00	19	3	13.64
PCDH12	0	genome.wustl.edu	37	5	141324955	141324956	+	In_Frame_Ins	INS	-	-	CTGCTGCTG			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	5	141324955	141324956	-	CTGCTGCTG	INS	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	in_frame_ins	c.3546_3545	p.1182in_frame_insSSS	0.176:0.994	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555	tier1			NA	NA	NA	NA	NA	NA
ZNF564	0	genome.wustl.edu	37	19	12638575	12638575	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	19	12638575	12638575	G	A	SNP	ZNF564	ENST00000339282	human	ensembl	74_37	-1	known	missense	c.347	p.S116L	0.993	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF564	HGNC	ENSG00000249709	tier1	-	-	29	0	0.00	31	26	45.61
LOC100506302	0	genome.wustl.edu	37	7	155404081	155404081	+	Silent	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	7	155404081	155404081	G	A	SNP	LOC100506302	ENST00000401694	human	ensembl	74_37	-1	putative	silent	c.132	p.I44	0.005	NULL	NULL	-	no_errors	AC009403.2	Clone_based_vega_gene	ENSG00000216895	tier1	-	-	15	0	0.00	31	30	49.18
CRB1	0	genome.wustl.edu	37	1	197398724	197398724	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	1	197398724	197398724	C	T	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	missense	c.2822	p.P941L	0.009	NULL	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	tier1	rs77334581	GMAF=0.0005	41	0	0.00	56	27	32.53
LSAMP	0	genome.wustl.edu	37	3	115535479	115535479	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	3	115535479	115535479	C	T	SNP	LSAMP	ENST00000333617	human	ensembl	74_37	-1	novel	missense	c.922	p.V308M	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LSAMP	HGNC	ENSG00000185565	tier1	-	-	43	0	0.00	32	26	44.83
SLC30A9	0	genome.wustl.edu	37	4	42080286	42080286	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	4	42080286	42080286	G	C	SNP	SLC30A9	ENST00000264451	human	ensembl	74_37	+1	known	missense	c.1606	p.E536Q	1.000	NULL	pfam_Cation_efflux,superfamily_DNA-bd_dom_put,tigrfam_Cation_efflux	-	no_errors	SLC30A9	HGNC	ENSG00000014824	tier1	-	-	53	0	0.00	56	5	8.20
ADARB2	0	genome.wustl.edu	37	10	1230815	1230815	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	10	1230815	1230815	G	A	SNP	ADARB2	ENST00000381312	human	ensembl	74_37	-1	known	missense	c.2029	p.R677W	0.282	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADARB2	HGNC	ENSG00000185736	tier1	-	-	52	0	0.00	60	33	35.11
TRIM25	0	genome.wustl.edu	37	17	54968579	54968579	+	RNA	SNP	G	G	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	17	54968579	54968579	G	T	SNP	TRIM25	ENST00000573108	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.001	-	-	-	no_errors	TRIM25	HGNC	ENSG00000121060	tier1	-	-	24	0	0.00	10	4	28.57
NGF	0	genome.wustl.edu	37	1	115828887	115828887	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	1	115828887	115828887	G	T	SNP	NGF	ENST00000369512	human	ensembl	74_37	-1	known	missense	c.530	p.T177N	1.000	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,pfscan_Nerve_growth_factor-rel	pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel	-	no_errors	NGF	HGNC	ENSG00000134259	tier1	-	-	39	0	0.00	34	25	42.37
LGALS17A	0	genome.wustl.edu	37	19	40172709	40172709	+	RNA	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	19	40172709	40172709	G	A	SNP	LGALS17A	ENST00000412609	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	LGALS17A	Clone_based_vega_gene	ENSG00000226025	tier1	-	-	44	0	0.00	67	66	49.62
ENSG00000237281	0	genome.wustl.edu	37	2	219215890	219215890	+	RNA	DEL	T	T	-			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	2	219215890	219215890	T	-	DEL	ENSG00000237281	ENST00000411433	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.199	-	-	-	no_errors	AC021016.8	Clone_based_vega_gene	ENSG00000237281	tier1			42	0	0.00	42	4	8.70
NCOR2	0	genome.wustl.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	12	124824721	124824722	-	GCCGCTGCT	INS	NCOR2	ENST00000356219	human	ensembl	74_37	-1	known	in_frame_ins	c.5539_5538	p.1846in_frame_insSSG	1.000:0.999	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR2	HGNC	ENSG00000196498	tier1			NA	NA	NA	NA	NA	NA
FGFBP1	0	genome.wustl.edu	37	4	15938241	15938241	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	4	15938241	15938241	G	T	SNP	FGFBP1	ENST00000259988	human	ensembl	74_37	-1	known	missense	c.15	p.S5R	0.494	NULL	pfam_FGF1-bd	-	no_errors	FGFBP1	HGNC	ENSG00000137440	tier1	-	-	35	0	0.00	6	32	84.21
CLLU1OS	0	genome.wustl.edu	37	12	92816388	92816388	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	12	92816388	92816388	C	G	SNP	CLLU1OS	ENST00000378487	human	ensembl	74_37	-1	known	missense	c.77	p.S26T	0.000	NULL	NULL	-	no_errors	CLLU1OS	HGNC	ENSG00000205057	tier1	-	-	42	0	0.00	32	28	46.67
ANO9	0	genome.wustl.edu	37	11	428528	428528	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	11	428528	428528	C	T	SNP	ANO9	ENST00000332826	human	ensembl	74_37	-1	known	missense	c.1132	p.V378M	0.952	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO9	HGNC	ENSG00000185101	tier1	-	-	37	0	0.00	41	5	10.87
ZNF786	0	genome.wustl.edu	37	7	148771578	148771578	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	7	148771578	148771578	C	G	SNP	ZNF786	ENST00000491431	human	ensembl	74_37	-1	known	missense	c.198	p.E66D	0.189	smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF786	HGNC	ENSG00000197362	tier1	-	-	58	0	0.00	28	43	60.56
RB1	0	genome.wustl.edu	37	13	49039232	49039232	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	13	49039232	49039232	G	T	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	missense	c.2310	p.Q770H	1.000	pfam_RB_C,superfamily_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1	-	-	76	0	0.00	45	4	8.16
RB1	0	genome.wustl.edu	37	13	49030390	49030391	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	13	49030390	49030391	-	A	INS	RB1	ENST00000267163	human	ensembl	74_37	+1	known	frame_shift_ins	c.1865_1866	p.N623fs	0.967:0.967	NULL	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1			41	0	0.00	7	28	80.00
KIAA0430	0	genome.wustl.edu	37	16	15696479	15696480	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	16	15696479	15696480	GA	-	DEL	KIAA0430	ENST00000344181	human	ensembl	74_37	-1	known	frame_shift_del	c.3340_3339	p.P1114fs	0.000:0.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	tier1			9	0	0.00	19	9	32.14
CRNN	0	genome.wustl.edu	37	1	152382389	152382389	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	1	152382389	152382389	A	T	SNP	CRNN	ENST00000271835	human	ensembl	74_37	-1	known	missense	c.1169	p.V390E	0.002	NULL	pfam_S100_Ca-bd_sub,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CRNN	HGNC	ENSG00000143536	tier1	-	-	48	0	0.00	122	16	11.59
IGSF22	0	genome.wustl.edu	37	11	18733913	18733913	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	11	18733913	18733913	T	C	SNP	IGSF22	ENST00000513874	human	ensembl	74_37	-1	known	missense	c.2114	p.Q705R	0.981	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGSF22	HGNC	ENSG00000179057	tier1	-	-	36	0	0.00	50	8	13.79
CACNA1A	0	genome.wustl.edu	37	19	13397420	13397420	+	Silent	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	19	13397420	13397420	G	A	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	silent	c.3450	p.S1150	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	tier1	-	-	23	0	0.00	25	20	44.44
HIRA	0	genome.wustl.edu	37	22	19384361	19384361	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	22	19384361	19384361	C	G	SNP	HIRA	ENST00000263208	human	ensembl	74_37	-1	known	missense	c.603	p.W201C	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Hira,pfam_WD40_repeat,pfam_HIRA_B_motif,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	HIRA	HGNC	ENSG00000100084	tier1	-	-	34	0	0.00	54	5	8.33
DNAH7	0	genome.wustl.edu	37	2	196689122	196689122	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	2	196689122	196689122	G	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.9148	p.L3050I	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997	tier1	-	-	50	0	0.00	46	4	8.00
CDH26	0	genome.wustl.edu	37	20	58587784	58587784	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	20	58587784	58587784	A	-	DEL	CDH26	ENST00000348616	human	ensembl	74_37	+1	known	frame_shift_del	c.2498	p.*833fs	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	tier1			24	0	0.00	35	4	10.26
PNPLA7	0	genome.wustl.edu	37	9	140379046	140379046	+	Silent	SNP	G	G	A			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	9	140379046	140379046	G	A	SNP	PNPLA7	ENST00000406427	human	ensembl	74_37	-1	known	silent	c.2340	p.S780	0.079	NULL	pfam_cNMP-bd_dom,pfam_Patatin/PLipase_A2-rel,superfamily_Acyl_Trfase/lysoPLipase,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	PNPLA7	HGNC	ENSG00000130653	tier1	-	-	122	1	0.81	109	91	45.27
SLC39A6	0	genome.wustl.edu	37	18	33694172	33694172	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	18	33694172	33694172	A	C	SNP	SLC39A6	ENST00000269187	human	ensembl	74_37	-1	known	missense	c.1731	p.S577R	0.997	pfam_ZIP	pfam_ZIP	-	no_errors	SLC39A6	HGNC	ENSG00000141424	tier1	-	-	31	0	0.00	60	19	24.05
RPA4	0	genome.wustl.edu	37	X	96140083	96140083	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	X	96140083	96140083	G	C	SNP	RPA4	ENST00000373040	human	ensembl	74_37	+1	known	missense	c.774	p.K258N	0.026	pirsf_RPA32	pfam_RPA_C,pfam_NA-bd_OB_tRNA,superfamily_NA-bd_OB-fold,pirsf_RPA32	-	no_errors	RPA4	HGNC	ENSG00000204086	tier1	-	-	17	0	0.00	17	22	56.41
ALDH18A1	0	genome.wustl.edu	37	10	97402888	97402888	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	10	97402888	97402888	C	T	SNP	ALDH18A1	ENST00000371224	human	ensembl	74_37	-1	known	missense	c.164	p.R55H	0.999	pirsf_P5_carboxy_syn	pfam_Asp/Glu/Uridylate_kinase,pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,superfamily_Asp/Glu/Uridylate_kinase,pirsf_P5_carboxy_syn,prints_Glu/AcGlu_kinase,tigrfam_P5_carboxy_syn,tigrfam_G-glutamylP_reductase	-	no_errors	ALDH18A1	HGNC	ENSG00000059573	tier1	-	-	15	0	0.00	18	19	51.35
APOBR	0	genome.wustl.edu	37	16	28507424	28507424	+	Silent	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	16	28507424	28507424	C	T	SNP	APOBR	ENST00000564831	human	ensembl	74_37	+1	known	silent	c.1062	p.A354	0.000	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730	tier1	rs441214	-	17	0	0.00	27	8	22.86
NAA16	0	genome.wustl.edu	37	13	41936768	41936768	+	RNA	SNP	G	G	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	13	41936768	41936768	G	T	SNP	NAA16	ENST00000497143	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.961	-	-	-	no_errors	NAA16	HGNC	ENSG00000172766	tier1	-	-	60	0	0.00	46	4	8.00
ENSG00000173213	0	genome.wustl.edu	37	18	47562	47582	+	In_Frame_Del	DEL	ATTGCTGTAAACTGCTCTGAG	ATTGCTGTAAACTGCTCTGAG	-			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	ATTGCTGTAAACTGCTCTGAG	ATTGCTGTAAACTGCTCTGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	18	47562	47582	ATTGCTGTAAACTGCTCTGAG	-	DEL	ENSG00000173213	ENST00000308911	human	ensembl	74_37	-1	known	in_frame_del	c.1163_1143	p.SEQFTAM382in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	RP11-683L23.1	Clone_based_vega_gene	ENSG00000173213	tier1			NA	NA	NA	NA	NA	NA
MYO7A	0	genome.wustl.edu	37	11	76895771	76895792	+	Frame_Shift_Del	DEL	GGAGGCGGGGACACCAGGGCCT	GGAGGCGGGGACACCAGGGCCT	-			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	GGAGGCGGGGACACCAGGGCCT	GGAGGCGGGGACACCAGGGCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	11	76895771	76895792	GGAGGCGGGGACACCAGGGCCT	-	DEL	MYO7A	ENST00000409893	human	ensembl	74_37	+1	putative	frame_shift_del	c.3514_3535	p.G1172fs	0.000:0.000:0.001:0.001:0.004:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.011:0.011:0.009:0.051:0.048:0.007	smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom	-	no_errors	MYO7A	HGNC	ENSG00000137474	tier1			NA	NA	NA	NA	NA	NA
CACNG3	0	genome.wustl.edu	37	16	24373086	24373086	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	16	24373086	24373086	C	T	SNP	CACNG3	ENST00000005284	human	ensembl	74_37	+1	known	missense	c.850	p.R284W	1.000	NULL	pfam_PMP22/EMP/MP20/Claudin,prints_VDCC_gsu	-	no_errors	CACNG3	HGNC	ENSG00000006116	tier1	-	-	15	0	0.00	18	23	56.10
ADRB2	0	genome.wustl.edu	37	5	148206526	148206526	+	Silent	SNP	C	C	T			TCGA-DX-A3UE-01A-11D-A307-09	TCGA-DX-A3UE-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	99becc09-c06c-445f-946c-0d4950325629	2ae737e8-11a5-4237-9e76-1dc179ac3d11	5	148206526	148206526	C	T	SNP	ADRB2	ENST00000305988	human	ensembl	74_37	+1	known	silent	c.132	p.V44	0.998	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_ADRB2_rcpt,prints_GPCR_Rhodpsn,prints_ADR_fam	-	no_errors	ADRB2	HGNC	ENSG00000169252	tier1	-	-	29	0	0.00	34	31	47.69
