Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ABCC5	0	genome.wustl.edu	37	3	183646535	183646535	+	Silent	SNP	A	A	G			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	3	183646535	183646535	A	G	SNP	ABCC5	ENST00000334444	human	ensembl	74_37	-1	known	silent	c.3933	p.C1311	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC1_TM_dom,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC5	HGNC	ENSG00000114770	tier1	-	-	32	0	0.00	33	4	10.81
MYO3A	0	genome.wustl.edu	37	10	26310463	26310463	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	10	26310463	26310463	C	T	SNP	MYO3A	ENST00000265944	human	ensembl	74_37	+1	known	missense	c.617	p.T206I	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	tier1	-	-	43	0	0.00	18	32	64.00
VTN	0	genome.wustl.edu	37	17	26696630	26696630	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	17	26696630	26696630	G	T	SNP	VTN	ENST00000226218	human	ensembl	74_37	-1	known	missense	c.427	p.H143N	0.000	NULL	pfam_Hemopexin-like_repeat,pfam_Somatomedin_B_dom,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	VTN	HGNC	ENSG00000109072	tier1	-	-	28	0	0.00	27	4	12.90
FTH1P10	0	genome.wustl.edu	37	5	17353803	17353804	+	RNA	INS	-	-	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	5	17353803	17353804	-	T	INS	FTH1P10	ENST00000401830	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.004	-	-	-	no_errors	FTH1P10	HGNC	ENSG00000223361	tier1			22	0	0.00	32	7	17.95
SEH1L	0	genome.wustl.edu	37	18	12986927	12986929	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	18	12986927	12986929	TCC	-	DEL	SEH1L	ENST00000399892	human	ensembl	74_37	+1	known	in_frame_del	c.1137_1139	p.P383in_frame_del	0.997:1.000:1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	SEH1L	HGNC	ENSG00000085415	tier1			25	0	0.00	25	4	13.79
DBNDD2	0	genome.wustl.edu	37	20	44038638	44038640	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	20	44038638	44038640	CCT	-	DEL	DBNDD2	ENST00000372720	human	ensembl	74_37	+1	known	in_frame_del	c.638_640	p.S217in_frame_del	0.980:0.959:0.969	pfam_Dysbindin	pfam_Dysbindin	-	no_errors	DBNDD2	HGNC	ENSG00000244274	tier1			16	0	0.00	20	2	9.09
KIAA0100	0	genome.wustl.edu	37	17	26961805	26961805	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	17	26961805	26961805	G	T	SNP	KIAA0100	ENST00000528896	human	ensembl	74_37	-1	known	missense	c.2800	p.L934I	1.000	NULL	pfam_FMP27_C,pfam_FMP27_N,pfam_FMP27_GFWDK_dom	-	no_errors	KIAA0100	HGNC	ENSG00000007202	tier1	-	-	58	0	0.00	40	4	9.09
DNAH3	0	genome.wustl.edu	37	16	21108691	21108691	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	16	21108691	21108691	C	G	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	missense	c.2650	p.E884Q	0.999	pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	tier1	-	-	37	0	0.00	24	14	36.84
ELL3	0	genome.wustl.edu	37	15	44065171	44065171	+	RNA	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	15	44065171	44065171	G	T	SNP	ELL3	ENST00000497465	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	ELL3	HGNC	ENSG00000128886	tier1	-	-	35	0	0.00	40	4	9.09
TMED10	0	genome.wustl.edu	37	14	75601711	75601712	+	Splice_Site	INS	-	-	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	14	75601711	75601712	-	A	INS	TMED10	ENST00000303575	human	ensembl	74_37	-1	known	splice_site_ins	c.539-3_539-2	e5-2	1.000:0.961	-	-	-	no_errors	TMED10	HGNC	ENSG00000170348	tier1			38	0	0.00	27	3	10.00
CES1P1	0	genome.wustl.edu	37	16	55803899	55803899	+	RNA	SNP	G	G	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	16	55803899	55803899	G	A	SNP	CES1P1	ENST00000571348	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.860	-	-	-	no_errors	CES1P1	HGNC	ENSG00000228695	tier1	-	-	14	0	0.00	11	4	26.67
SDHAP1	0	genome.wustl.edu	37	3	195687221	195687221	+	RNA	SNP	A	A	G			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	3	195687221	195687221	A	G	SNP	SDHAP1	ENST00000427149	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	SDHAP1	HGNC	ENSG00000185485	tier1	rs62282781	-	14	0	0.00	8	5	38.46
MIR200A	0	genome.wustl.edu	37	1	1103249	1103249	+	RNA	SNP	C	C	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	1103249	1103249	C	T	SNP	MIR200A	ENST00000384875	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR200A	HGNC	ENSG00000207607	tier1	-	-	111	0	0.00	9	60	86.96
ENSG00000235704	0	genome.wustl.edu	37	22	20378616	20378628	+	RNA	DEL	GGGATCCGGGGGT	GGGATCCGGGGGT	-			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	GGGATCCGGGGGT	GGGATCCGGGGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	22	20378616	20378628	GGGATCCGGGGGT	-	DEL	ENSG00000235704	ENST00000426653	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009:0.014:0.006:0.004:0.011:0.028:0.217:0.219:0.178:0.177:0.193:0.194:0.213	-	-	-	no_errors	AC023490.2	Clone_based_vega_gene	ENSG00000235704	tier1			NA	NA	NA	NA	NA	NA
SPERT	0	genome.wustl.edu	37	13	46277722	46277722	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	13	46277722	46277722	C	T	SNP	SPERT	ENST00000378966	human	ensembl	74_37	+1	putative	missense	c.44	p.A15V	0.157	NULL	NULL	-	no_errors	SPERT	HGNC	ENSG00000174015	tier1	-	-	46	0	0.00	29	4	12.12
GCK	0	genome.wustl.edu	37	7	44187337	44187337	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	7	44187337	44187337	C	T	SNP	GCK	ENST00000345378	human	ensembl	74_37	-1	known	missense	c.778	p.A260T	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	GCK	HGNC	ENSG00000106633	tier1	-	-	48	0	0.00	37	4	9.76
CROCCP2	0	genome.wustl.edu	37	1	16945182	16945184	+	RNA	DEL	AAT	AAT	-			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	AAT	AAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	16945182	16945184	AAT	-	DEL	CROCCP2	ENST00000412962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016:0.018:0.018	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	tier1			17	0	0.00	10	4	28.57
ENSG00000196566	0	genome.wustl.edu	37	10	89419638	89419639	+	RNA	INS	-	-	GCT			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	10	89419638	89419639	-	GCT	INS	ENSG00000196566	ENST00000354527	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-57C13.3	Clone_based_vega_gene	ENSG00000196566	tier1			11	0	0.00	4	5	55.56
ENSG00000264742	0	genome.wustl.edu	37	1	17007767	17007767	+	RNA	SNP	G	G	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	17007767	17007767	G	A	SNP	ENSG00000264742	ENST00000584111	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.190	-	-	-	no_errors	AL021920.1	Clone_based_ensembl_gene	ENSG00000264742	tier1	-	-	120	0	0.00	53	10	15.87
TELO2	0	genome.wustl.edu	37	16	1550652	1550652	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	16	1550652	1550652	G	T	SNP	TELO2	ENST00000262319	human	ensembl	74_37	+1	known	missense	c.1233	p.E411D	0.755	NULL	pfam_Telomere_length_regulation_dom,superfamily_ARM-type_fold	-	no_errors	TELO2	HGNC	ENSG00000100726	tier1	-	-	32	0	0.00	22	4	15.38
ENSG00000258634	0	genome.wustl.edu	37	1	110603286	110603287	+	RNA	INS	-	-	GGTGCTTCCTCCGTGGTGTCCAGGCAGG			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	110603286	110603287	-	GGTGCTTCCTCCGTGGTGTCCAGGCAGG	INS	ENSG00000258634	ENST00000554749	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.324:0.902	-	-	-	no_errors	RP4-773N10.4	Clone_based_vega_gene	ENSG00000258634	tier1			NA	NA	NA	NA	NA	NA
RASAL2	0	genome.wustl.edu	37	1	178063820	178063820	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	178063820	178063820	C	T	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	missense	c.193	p.R65W	1.000	smart_Pleckstrin_homology	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	tier1	-	-	34	0	0.00	13	13	50.00
TMEM132D	0	genome.wustl.edu	37	12	129694177	129694177	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	12	129694177	129694177	G	A	SNP	TMEM132D	ENST00000422113	human	ensembl	74_37	-1	known	missense	c.1331	p.T444M	1.000	NULL	NULL	-	no_errors	TMEM132D	HGNC	ENSG00000151952	tier1	-	-	49	0	0.00	26	17	39.53
DNMT3A	0	genome.wustl.edu	37	2	25469935	25469935	+	Silent	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	2	25469935	25469935	G	T	SNP	DNMT3A	ENST00000264709	human	ensembl	74_37	-1	known	silent	c.1107	p.I369	1.000	NULL	pfam_PWWP_dom,pfam_C5_MeTfrase,superfamily_Znf_FYVE_PHD,smart_PWWP_dom,pfscan_PWWP_dom	-	no_errors	DNMT3A	HGNC	ENSG00000119772	tier1	-	-	51	0	0.00	57	5	8.06
OR4L1	0	genome.wustl.edu	37	14	20528449	20528467	+	Frame_Shift_Del	DEL	CATAGATTTGCTCACTGAC	CATAGATTTGCTCACTGAC	-			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	CATAGATTTGCTCACTGAC	CATAGATTTGCTCACTGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	14	20528449	20528467	CATAGATTTGCTCACTGAC	-	DEL	OR4L1	ENST00000315683	human	ensembl	74_37	+1	known	frame_shift_del	c.246_264	p.I83fs	0.310:0.063:0.001:0.001:0.010:0.035:0.041:0.029:0.169:0.162:0.267:0.267:0.008:0.000:0.000:0.000:0.000:0.001:0.002	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	OR4L1	HGNC	ENSG00000176246	tier1			NA	NA	NA	NA	NA	NA
ITGA6	0	genome.wustl.edu	37	2	173355768	173355768	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	2	173355768	173355768	G	T	SNP	ITGA6	ENST00000264106	human	ensembl	74_37	+1	known	missense	c.2813	p.R938I	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA6	HGNC	ENSG00000091409	tier1	-	-	42	0	0.00	43	4	8.51
ZNF134	0	genome.wustl.edu	37	19	58132422	58132422	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	19	58132422	58132422	G	T	SNP	ZNF134	ENST00000396161	human	ensembl	74_37	+1	known	missense	c.935	p.G312V	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF134	HGNC	ENSG00000213762	tier1	-	-	37	0	0.00	33	4	10.81
LNX1	0	genome.wustl.edu	37	4	54327211	54327212	+	Splice_Site	INS	-	-	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	4	54327211	54327212	-	A	INS	LNX1	ENST00000263925	human	ensembl	74_37	-1	known	splice_site_ins	c.2052-3_2052-2	e10-2	0.694:0.015	-	-	-	no_errors	LNX1	HGNC	ENSG00000072201	tier1			28	0	0.00	17	5	22.73
FAM196B	0	genome.wustl.edu	37	5	169309787	169309787	+	Silent	SNP	A	A	G			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	5	169309787	169309787	A	G	SNP	FAM196B	ENST00000377365	human	ensembl	74_37	-1	known	silent	c.1116	p.N372	0.000	NULL	NULL	-	no_errors	FAM196B	HGNC	ENSG00000204767	tier1	-	-	55	0	0.00	61	7	10.29
POMC	0	genome.wustl.edu	37	2	25384456	25384457	+	In_Frame_Ins	INS	-	-	GCTGCTGCT			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	2	25384456	25384457	-	GCTGCTGCT	INS	POMC	ENST00000264708	human	ensembl	74_37	-1	known	in_frame_ins	c.298_297	p.99in_frame_insSSS	0.404:0.522	NULL	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC	ENSG00000115138	tier1			NA	NA	NA	NA	NA	NA
GSTA4	0	genome.wustl.edu	37	6	52849261	52849261	+	Splice_Site	SNP	C	C	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	6	52849261	52849261	C	A	SNP	GSTA4	ENST00000370959	human	ensembl	74_37	-1	known	splice_site	c.414+1	e4+1	1.000	-	-	-	no_errors	GSTA4	HGNC	ENSG00000170899	tier1	-	-	208	0	0.00	20	90	81.82
PRRC2C	0	genome.wustl.edu	37	1	171511148	171511149	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	171511148	171511149	-	A	INS	PRRC2C	ENST00000392078	human	ensembl	74_37	+1	known	frame_shift_ins	c.4543_4544	p.N1518fs	1.000:1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC	ENSG00000117523	tier1			28	0	0.00	24	5	17.24
ENSG00000233207	0	genome.wustl.edu	37	9	42366347	42366347	+	RNA	SNP	G	G	C			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	9	42366347	42366347	G	C	SNP	ENSG00000233207	ENST00000450520	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.081	-	-	-	no_errors	RP11-216M21.7	Clone_based_vega_gene	ENSG00000233207	tier1	rs200984588	-	19	0	0.00	23	5	17.86
HES3	0	genome.wustl.edu	37	1	6305511	6305511	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	6305511	6305511	G	T	SNP	HES3	ENST00000377898	human	ensembl	74_37	+1	known	missense	c.505	p.G169W	0.007	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	HES3	HGNC	ENSG00000173673	tier1	-	-	80	0	0.00	29	4	12.12
ENPP1	0	genome.wustl.edu	37	6	132211605	132211605	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	6	132211605	132211605	T	-	DEL	ENPP1	ENST00000360971	human	ensembl	74_37	+1	known	frame_shift_del	c.2732	p.L912fs	1.000	NULL	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	ENPP1	HGNC	ENSG00000197594	tier1			42	0	0.00	40	4	9.09
CTSE	0	genome.wustl.edu	37	1	206327295	206327295	+	RNA	DEL	A	A	-			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	206327295	206327295	A	-	DEL	CTSE	ENST00000486757	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CTSE	HGNC	ENSG00000196188	tier1			27	0	0.00	22	2	8.33
HLA-DRB1	0	genome.wustl.edu	37	6	32548628	32548628	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	6	32548628	32548628	G	A	SNP	HLA-DRB1	ENST00000360004	human	ensembl	74_37	-1	known	missense	c.658	p.R220W	0.988	NULL	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like_dom	-	no_errors	HLA-DRB1	HGNC	ENSG00000196126	tier1	rs34624872	-	133	1	0.75	35	9	20.45
F5	0	genome.wustl.edu	37	1	169510957	169510957	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	169510957	169510957	T	C	SNP	F5	ENST00000367797	human	ensembl	74_37	-1	known	missense	c.3371	p.E1124G	0.277	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F5	HGNC	ENSG00000198734	tier1	-	-	105	0	0.00	65	44	40.37
UBE3B	0	genome.wustl.edu	37	12	109968375	109968375	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	12	109968375	109968375	G	T	SNP	UBE3B	ENST00000342494	human	ensembl	74_37	+1	known	missense	c.2834	p.G945V	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_IQ_motif_EF-hand-BS,superfamily_HECT,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3B	HGNC	ENSG00000151148	tier1	-	-	27	0	0.00	38	4	9.52
ENSG00000216166	0	genome.wustl.edu	37	3	183520323	183520324	+	RNA	INS	-	-	TA			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	3	183520323	183520324	-	TA	INS	ENSG00000216166	ENST00000401347	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC131160.1	Clone_based_ensembl_gene	ENSG00000216166	tier1			11	0	0.00	11	6	35.29
TTLL5	0	genome.wustl.edu	37	14	76420882	76420882	+	RNA	DEL	T	T	-			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	14	76420882	76420882	T	-	DEL	TTLL5	ENST00000554972	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	TTLL5	HGNC	ENSG00000119685	tier1			25	0	0.00	33	4	10.81
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs28934578	-	30	0	0.00	2	17	89.47
SPPL2C	0	genome.wustl.edu	37	17	43924079	43924079	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	17	43924079	43924079	G	A	SNP	SPPL2C	ENST00000329196	human	ensembl	74_37	+1	known	missense	c.1807	p.G603S	1.000	NULL	pfam_Peptidase_A22B_SPP,pfam_Protease-assoc_domain,smart_Preselin/SPP	-	no_errors	SPPL2C	HGNC	ENSG00000185294	tier1	-	-	32	0	0.00	21	7	25.00
C10orf68	0	genome.wustl.edu	37	10	33140795	33140795	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	10	33140795	33140795	C	T	SNP	C10orf68	ENST00000375025	human	ensembl	74_37	+1	known	missense	c.1877	p.T626I	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	tier1	-	-	43	0	0.00	44	6	12.00
ENSG00000228830	0	genome.wustl.edu	37	1	234742799	234742800	+	RNA	INS	-	-	AT			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	1	234742799	234742800	-	AT	INS	ENSG00000228830	ENST00000436039	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	RP4-781K5.2	Clone_based_vega_gene	ENSG00000228830	tier1			27	0	0.00	15	3	16.67
HCFC1	0	genome.wustl.edu	37	X	153230115	153230115	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	X	153230115	153230115	C	A	SNP	HCFC1	ENST00000310441	human	ensembl	74_37	-1	known	missense	c.256	p.G86C	1.000	NULL	pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	HCFC1	HGNC	ENSG00000172534	tier1	-	-	34	0	0.00	32	4	11.11
FAM134A	0	genome.wustl.edu	37	2	220045810	220045810	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48J-01A-21D-A307-09	TCGA-DX-A48J-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	c31d841a-1b54-4e64-bde0-e458668a7f88	130d56bf-7533-4fbc-bea1-bc8973a3b123	2	220045810	220045810	G	T	SNP	FAM134A	ENST00000430297	human	ensembl	74_37	+1	known	missense	c.667	p.V223L	1.000	pfam_Reticulon	pfam_Reticulon	-	no_errors	FAM134A	HGNC	ENSG00000144567	tier1	-	-	85	0	0.00	38	30	44.12
