Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NPIPP1	0	genome.wustl.edu	37	16	15198400	15198401	+	RNA	INS	-	-	G			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	16	15198400	15198401	-	G	INS	NPIPP1	ENST00000534799	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.017:0.018	-	-	-	no_errors	NPIPP1	HGNC	ENSG00000188599	tier1			28	0	0.00	45	9	16.67
RPL23AP82	0	genome.wustl.edu	37	22	51237643	51237643	+	RNA	SNP	C	C	G			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	22	51237643	51237643	C	G	SNP	RPL23AP82	ENST00000462238	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	AC002055.4	Clone_based_vega_gene	ENSG00000184319	tier1	-	-	19	0	0.00	11	8	42.11
ATP5J2-PTCD1	0	genome.wustl.edu	37	7	99022880	99022880	+	Silent	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	7	99022880	99022880	G	A	SNP	ATP5J2-PTCD1	ENST00000413834	human	ensembl	74_37	-1	known	silent	c.1422	p.A474	0.000	NULL	pfam_Pentatricopeptide_repeat,pfam_F1F0-ATPsyn_F_prd,tigrfam_Pentatricopeptide_repeat	-	no_errors	ATP5J2-PTCD1	HGNC	ENSG00000248919	tier1	-	-	22	0	0.00	17	14	45.16
MCRS1	0	genome.wustl.edu	37	12	49960203	49960203	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	12	49960203	49960203	C	-	DEL	MCRS1	ENST00000357123	human	ensembl	74_37	-1	known	frame_shift_del	c.20	p.G7fs	0.965	NULL	pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_FHA_dom	-	no_errors	MCRS1	HGNC	ENSG00000187778	tier1			36	0	0.00	33	3	8.33
LAMC3	0	genome.wustl.edu	37	9	133901823	133901823	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	9	133901823	133901823	G	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	missense	c.525	p.E175D	0.946	pfam_Laminin_N,smart_Laminin_N,pfscan_Laminin_N	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	tier1	-	-	43	0	0.00	36	4	10.00
TGM6	0	genome.wustl.edu	37	20	2380365	2380365	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	20	2380365	2380365	C	A	SNP	TGM6	ENST00000202625	human	ensembl	74_37	+1	known	missense	c.831	p.F277L	1.000	pfam_Transglutaminase-like,smart_Transglutaminase-like	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM6	HGNC	ENSG00000166948	tier1	-	-	29	0	0.00	29	4	12.12
SLC25A36	0	genome.wustl.edu	37	3	140695202	140695207	+	In_Frame_Del	DEL	TCGTGG	TCGTGG	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	TCGTGG	TCGTGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	3	140695202	140695207	TCGTGG	-	DEL	SLC25A36	ENST00000324194	human	ensembl	74_37	+1	known	in_frame_del	c.843_848	p.RG282in_frame_del	1.000:1.000:1.000:0.993:1.000:1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Mit_uncoupling	-	no_errors	SLC25A36	HGNC	ENSG00000114120	tier1			NA	NA	NA	NA	NA	NA
LSP1	0	genome.wustl.edu	37	11	1905554	1905557	+	Splice_Site	DEL	GTCT	GTCT	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	GTCT	GTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	11	1905554	1905557	GTCT	-	DEL	LSP1	ENST00000311604	human	ensembl	74_37	+1	known	splice_site_del	c.635+1_635+1	e6+1	1.000:0.959:0.063:0.057	-	-	-	no_errors	LSP1	HGNC	ENSG00000130592	tier1			53	0	0.00	48	6	11.11
SYCP3	0	genome.wustl.edu	37	12	102122901	102122901	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	12	102122901	102122901	T	-	DEL	SYCP3	ENST00000266743	human	ensembl	74_37	-1	known	frame_shift_del	c.643	p.I215fs	0.988	NULL	pfam_Cor1/Xlr/Xmr	-	no_errors	SYCP3	HGNC	ENSG00000139351	tier1			35	0	0.00	48	5	9.43
SLC19A1	0	genome.wustl.edu	37	21	46951687	46951687	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	21	46951687	46951687	A	T	SNP	SLC19A1	ENST00000311124	human	ensembl	74_37	-1	known	missense	c.565	p.S189T	1.000	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638	tier1	-	-	45	0	0.00	30	18	36.73
FBXL3	0	genome.wustl.edu	37	13	77581683	77581683	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	13	77581683	77581683	A	-	DEL	FBXL3	ENST00000355619	human	ensembl	74_37	-1	known	frame_shift_del	c.884	p.L295fs	1.000	NULL	pfam_F-box_dom,superfamily_F-box_dom,smart_F-box_dom	-	no_errors	FBXL3	HGNC	ENSG00000005812	tier1			33	0	0.00	27	3	10.00
PTPRVP	0	genome.wustl.edu	37	1	202156135	202156136	+	RNA	INS	-	-	CCTCGCT			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	202156135	202156136	-	CCTCGCT	INS	PTPRVP	ENST00000482597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.022:0.016	-	-	-	no_errors	PTPRVP	HGNC	ENSG00000243323	tier1			NA	NA	NA	NA	NA	NA
TNFRSF9	0	genome.wustl.edu	37	1	7995073	7995073	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	7995073	7995073	C	T	SNP	TNFRSF9	ENST00000377507	human	ensembl	74_37	-1	known	missense	c.544	p.G182R	0.003	NULL	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,pfscan_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9	-	no_errors	TNFRSF9	HGNC	ENSG00000049249	tier1	-	-	52	0	0.00	44	17	27.87
C4orf33	0	genome.wustl.edu	37	4	130030691	130030691	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	4	130030691	130030691	C	T	SNP	C4orf33	ENST00000281146	human	ensembl	74_37	+1	known	missense	c.358	p.L120F	0.981	NULL	NULL	-	no_errors	C4orf33	HGNC	ENSG00000151470	tier1	-	-	45	0	0.00	27	32	54.24
MAP3K14	0	genome.wustl.edu	37	17	43347872	43347872	+	RNA	SNP	G	G	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	17	43347872	43347872	G	T	SNP	MAP3K14	ENST00000344686	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	MAP3K14	HGNC	ENSG00000006062	tier1	-	-	52	0	0.00	46	4	8.00
GLUL	0	genome.wustl.edu	37	1	182353691	182353691	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	182353691	182353691	C	T	SNP	GLUL	ENST00000311223	human	ensembl	74_37	-1	known	missense	c.971	p.R324H	1.000	pfam_Gln_synth_cat_dom	pfam_Gln_synth_cat_dom,pfam_Gln_synt_beta,superfamily_Gln_synt_beta	-	no_errors	GLUL	HGNC	ENSG00000135821	tier1	-	-	32	0	0.00	27	14	34.15
PLK3	0	genome.wustl.edu	37	1	45270790	45270791	+	RNA	INS	-	-	AAAG			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	45270790	45270791	-	AAAG	INS	PLK3	ENST00000461769	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.008	-	-	-	no_errors	PLK3	HGNC	ENSG00000173846	tier1			13	0	0.00	21	4	16.00
ENSG00000216173	0	genome.wustl.edu	37	14	99828698	99828699	+	RNA	DEL	CA	CA	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	14	99828698	99828699	CA	-	DEL	ENSG00000216173	ENST00000401354	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	AL132819.1	Clone_based_ensembl_gene	ENSG00000216173	tier1			34	0	0.00	38	4	9.52
MGAT5	0	genome.wustl.edu	37	2	135206251	135206251	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	2	135206251	135206251	G	A	SNP	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	missense	c.2059	p.A687T	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127	tier1	-	-	40	0	0.00	45	4	8.16
PLEKHA8P1	0	genome.wustl.edu	37	12	45567092	45567092	+	RNA	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	12	45567092	45567092	C	T	SNP	PLEKHA8P1	ENST00000256692	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297	tier1	rs145353585	-	78	0	0.00	83	13	13.54
ENSG00000224363	0	genome.wustl.edu	37	1	144090788	144090788	+	RNA	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	144090788	144090788	C	A	SNP	ENSG00000224363	ENST00000441760	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.850	-	-	-	no_errors	RP11-289H16.1	Clone_based_vega_gene	ENSG00000224363	tier1	-	-	55	0	0.00	74	7	8.64
HOXA9	0	genome.wustl.edu	37	7	27204839	27204839	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	7	27204839	27204839	C	A	SNP	HOXA9	ENST00000343483	human	ensembl	74_37	-1	known	missense	c.238	p.A80S	1.000	pfam_Hox9_activation_N,pirsf_Homeobox_Hox9	pfam_Hox9_activation_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pirsf_Homeobox_Hox9,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	HOXA9	HGNC	ENSG00000078399	tier1	-	-	27	0	0.00	11	3	21.43
RBM5	0	genome.wustl.edu	37	3	50155888	50155889	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	3	50155888	50155889	GA	-	DEL	RBM5	ENST00000347869	human	ensembl	74_37	+1	known	frame_shift_del	c.2447_2448	p.*816fs	1.000:0.999	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756	tier1			23	0	0.00	22	8	26.67
TBC1D10A	0	genome.wustl.edu	37	22	30695466	30695466	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	22	30695466	30695466	C	A	SNP	TBC1D10A	ENST00000215790	human	ensembl	74_37	-1	known	missense	c.384	p.K128N	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D10A	HGNC	ENSG00000099992	tier1	-	-	45	0	0.00	37	4	9.76
CXorf30	0	genome.wustl.edu	37	X	36337408	36337408	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	X	36337408	36337408	C	T	SNP	CXorf30	ENST00000378657	human	ensembl	74_37	+1	known	missense	c.767	p.P256L	0.000	NULL	NULL	-	no_errors	CXorf30	HGNC	ENSG00000205081	tier1	-	-	31	0	0.00	18	22	55.00
TCEB3B	0	genome.wustl.edu	37	18	44560730	44560730	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	18	44560730	44560730	G	T	SNP	TCEB3B	ENST00000332567	human	ensembl	74_37	-1	known	missense	c.906	p.D302E	0.000	NULL	pfam_RNA_pol_II_trans_fac_SIII_A,pfam_TFIIS_N,superfamily_TFIIS_N,smart_TFIIS/CRSP70_N_sub	-	no_errors	TCEB3B	HGNC	ENSG00000206181	tier1	-	-	40	0	0.00	36	4	10.00
UNC5D	0	genome.wustl.edu	37	8	35624545	35624545	+	Silent	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	8	35624545	35624545	C	T	SNP	UNC5D	ENST00000404895	human	ensembl	74_37	+1	known	silent	c.2439	p.G813	1.000	NULL	pfam_ZU5,pfam_Ig_I-set,pfam_Thrombospondin_1_rpt,pfam_Death_domain,pfam_Immunoglobulin,superfamily_DEATH-like_dom,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,smart_ZU5,smart_Death_domain,pfscan_Thrombospondin_1_rpt,pfscan_ZU5,pfscan_Ig-like_dom	-	no_errors	UNC5D	HGNC	ENSG00000156687	tier1	-	-	31	0	0.00	30	4	11.76
OPCML	0	genome.wustl.edu	37	11	132307146	132307146	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	11	132307146	132307146	C	T	SNP	OPCML	ENST00000541867	human	ensembl	74_37	-1	known	missense	c.634	p.D212N	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	OPCML	HGNC	ENSG00000183715	tier1	-	-	47	0	0.00	28	25	47.17
LONRF2	0	genome.wustl.edu	37	2	100910718	100910718	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	2	100910718	100910718	C	T	SNP	LONRF2	ENST00000393437	human	ensembl	74_37	-1	known	missense	c.1730	p.G577D	1.000	pfam_Pept_S16_N,superfamily_PUA-like_domain,smart_Pept_S16_N	pfam_Pept_S16_N,pfam_Znf_C3HC4_RING-type,superfamily_PUA-like_domain,smart_Znf_RING,smart_TPR_repeat,smart_Pept_S16_N,pfscan_TPR-contain_dom,pfscan_Znf_RING	-	no_errors	LONRF2	HGNC	ENSG00000170500	tier1	-	-	49	0	0.00	46	4	8.00
PCDHA2	0	genome.wustl.edu	37	5	140176057	140176057	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	5	140176057	140176057	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	74_37	+1	known	missense	c.1508	p.A503V	0.132	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	tier1	-	-	163	0	0.00	105	41	27.52
TRIM16	0	genome.wustl.edu	37	17	15554817	15554817	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	17	15554817	15554817	G	A	SNP	TRIM16	ENST00000336708	human	ensembl	74_37	-1	known	missense	c.107	p.S36L	0.049	NULL	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl_sf,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	TRIM16	HGNC	ENSG00000221926	tier1	-	-	29	0	0.00	63	9	12.50
MYH7	0	genome.wustl.edu	37	14	23884643	23884645	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	14	23884643	23884645	CCT	-	DEL	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	in_frame_del	c.5230_5228	p.E1743in_frame_del	1.000:0.995:1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	tier1			55	0	0.00	45	14	23.73
FAM157C	0	genome.wustl.edu	37	16	90168703	90168703	+	RNA	SNP	A	A	G			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	16	90168703	90168703	A	G	SNP	FAM157C	ENST00000563357	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	FAM157C	HGNC	ENSG00000260528	tier1	-	-	111	0	0.00	96	13	11.93
ENSG00000234222	0	genome.wustl.edu	37	1	145508402	145508415	+	Splice_Site	DEL	CTCACTCTATTCCT	CTCACTCTATTCCT	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	CTCACTCTATTCCT	CTCACTCTATTCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	145508402	145508415	CTCACTCTATTCCT	-	DEL	ENSG00000234222	ENST00000596355	human	ensembl	74_37	-1	known	splice_site_del	c.NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	RP11-315I20.1	Clone_based_vega_gene	ENSG00000234222	tier1			NA	NA	NA	NA	NA	NA
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154811	+	RNA	DEL	A	A	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	11	78154811	78154811	A	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420	tier1			20	0	0.00	22	4	15.38
CFTR	0	genome.wustl.edu	37	7	117292952	117292952	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	7	117292952	117292952	G	T	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	missense	c.3930	p.W1310C	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	tier1	-	-	29	0	0.00	31	4	11.43
ANKRD20A5P	0	genome.wustl.edu	37	18	14184361	14184362	+	RNA	INS	-	-	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	18	14184361	14184362	-	T	INS	ANKRD20A5P	ENST00000581935	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	ANKRD20A5P	HGNC	ENSG00000186481	tier1			18	0	0.00	20	7	25.93
CELP	0	genome.wustl.edu	37	9	135962585	135962586	+	RNA	INS	-	-	GCCCCATCCCCGCTACGGGTGACTCTGAGGCC			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	9	135962585	135962586	-	GCCCCATCCCCGCTACGGGTGACTCTGAGGCC	INS	CELP	ENST00000411440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.130:0.000	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	tier1			NA	NA	NA	NA	NA	NA
PYCR1	0	genome.wustl.edu	37	17	79894067	79894067	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	17	79894067	79894067	C	T	SNP	PYCR1	ENST00000329875	human	ensembl	74_37	-1	known	missense	c.70	p.V24I	0.039	pfam_G3P_DH_NAD-dep_N,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	pfam_G3P_DH_NAD-dep_N,superfamily_6-PGluconate_DH_C-like,pirsf_Pyrroline-COOH_reductase,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCR1	HGNC	ENSG00000183010	tier1	-	-	49	0	0.00	60	13	17.81
SLC12A2	0	genome.wustl.edu	37	5	127419938	127419955	+	In_Frame_Del	DEL	GCGGCGGCGGCGGCGGCA	GCGGCGGCGGCGGCGGCA	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	GCGGCGGCGGCGGCGGCA	GCGGCGGCGGCGGCGGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	5	127419938	127419955	GCGGCGGCGGCGGCGGCA	-	DEL	SLC12A2	ENST00000262461	human	ensembl	74_37	+1	known	in_frame_del	c.292_309	p.AAAAAA101in_frame_del	0.986:0.660:0.322:0.982:0.990:0.982:0.984:0.993:0.986:0.997:0.991:0.966:0.942:0.693:0.010:0.018:0.020:0.019	NULL	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_Na/K/Cl_cotranspt1,prints_Na/K/Cl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A2	HGNC	ENSG00000064651	tier1			NA	NA	NA	NA	NA	NA
IFIT5	0	genome.wustl.edu	37	10	91177283	91177283	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	10	91177283	91177283	G	T	SNP	IFIT5	ENST00000371795	human	ensembl	74_37	+1	known	missense	c.327	p.Q109H	0.000	NULL	pfam_TPR_2,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	IFIT5	HGNC	ENSG00000152778	tier1	-	-	49	0	0.00	34	4	10.53
FAM118A	0	genome.wustl.edu	37	22	45719209	45719209	+	Silent	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	22	45719209	45719209	G	A	SNP	FAM118A	ENST00000216214	human	ensembl	74_37	+1	known	silent	c.201	p.E67	1.000	NULL	superfamily_RNaseH-like_dom	-	no_errors	FAM118A	HGNC	ENSG00000100376	tier1	-	-	19	0	0.00	15	5	25.00
ADAMTSL4	0	genome.wustl.edu	37	1	150524368	150524368	+	RNA	DEL	A	A	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	150524368	150524368	A	-	DEL	ADAMTSL4	ENST00000483335	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAMTSL4	HGNC	ENSG00000143382	tier1			14	0	0.00	24	4	14.29
PVRL2	0	genome.wustl.edu	37	19	45381598	45381600	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	19	45381598	45381600	GAG	-	DEL	PVRL2	ENST00000252485	human	ensembl	74_37	+1	known	in_frame_del	c.1161_1163	p.R391in_frame_del	0.999:1.000:1.000	NULL	pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	PVRL2	HGNC	ENSG00000130202	tier1			25	0	0.00	34	4	10.53
PSMC6	0	genome.wustl.edu	37	14	53187633	53187633	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	14	53187633	53187633	G	T	SNP	PSMC6	ENST00000445930	human	ensembl	74_37	+1	known	missense	c.874	p.A292S	1.000	pfam_ATPase_AAA_core,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	pfam_ATPase_AAA_core,pfam_ATPase_AAA-2,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_26S_Psome_P45	-	no_errors	PSMC6	HGNC	ENSG00000100519	tier1	-	-	46	0	0.00	38	4	9.52
ABI3BP	0	genome.wustl.edu	37	3	100542341	100542341	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	3	100542341	100542341	C	A	SNP	ABI3BP	ENST00000383691	human	ensembl	74_37	-1	known	nonsense	c.616	p.E206*	0.925	NULL	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	ABI3BP	HGNC	ENSG00000154175	tier1	-	-	36	0	0.00	38	4	9.52
RNF183	0	genome.wustl.edu	37	9	116059948	116059948	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	9	116059948	116059948	C	T	SNP	RNF183	ENST00000297894	human	ensembl	74_37	-1	known	missense	c.517	p.V173I	0.261	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF183	HGNC	ENSG00000165188	tier1	-	-	33	0	0.00	30	19	38.78
UVRAG	0	genome.wustl.edu	37	11	75694430	75694431	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	11	75694430	75694431	-	A	INS	UVRAG	ENST00000356136	human	ensembl	74_37	+1	known	frame_shift_ins	c.701_700	p.S237fs	1.000:1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom	-	no_errors	UVRAG	HGNC	ENSG00000198382	tier1			51	0	0.00	45	8	15.09
SIRT3	0	genome.wustl.edu	37	11	233415	233415	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	11	233415	233415	G	A	SNP	SIRT3	ENST00000382743	human	ensembl	74_37	-1	known	missense	c.401	p.A134V	0.000	pirsf_NAD-dep_deAcase_SIR2_class_I,pfscan_Ssirtuin_cat_dom	pfam_Sirtuin,pirsf_NAD-dep_deAcase_SIR2_class_I,pfscan_Ssirtuin_cat_dom	-	no_errors	SIRT3	HGNC	ENSG00000142082	tier1	-	-	18	0	0.00	18	9	33.33
DUOXA2	0	genome.wustl.edu	37	15	45409411	45409411	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	15	45409411	45409411	C	T	SNP	DUOXA2	ENST00000323030	human	ensembl	74_37	+1	known	missense	c.677	p.S226F	0.995	pfam_Dual_oxidase_maturation_fac	pfam_Dual_oxidase_maturation_fac	-	no_errors	DUOXA2	HGNC	ENSG00000140274	tier1	-	-	25	0	0.00	17	7	29.17
ENSG00000211996	0	genome.wustl.edu	37	6	130068891	130068891	+	RNA	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	6	130068891	130068891	G	A	SNP	ENSG00000211996	ENST00000390707	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.085	-	-	-	no_errors	Z97352.1	Clone_based_ensembl_gene	ENSG00000211996	tier1	-	-	38	0	0.00	16	6	27.27
ENSG00000214581	0	genome.wustl.edu	37	16	34682224	34682224	+	RNA	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	16	34682224	34682224	C	A	SNP	ENSG00000214581	ENST00000568619	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.136	-	-	-	no_errors	RP11-80F22.10	Clone_based_vega_gene	ENSG00000214581	tier1	-	-	77	0	0.00	69	23	25.00
BSN	0	genome.wustl.edu	37	3	49698842	49698842	+	Silent	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	3	49698842	49698842	C	A	SNP	BSN	ENST00000296452	human	ensembl	74_37	+1	known	silent	c.9564	p.G3188	1.000	NULL	pfam_Znf_piccolo,superfamily_Znf_FYVE_PHD	-	no_errors	BSN	HGNC	ENSG00000164061	tier1	-	-	40	0	0.00	20	3	13.04
CAPN8	0	genome.wustl.edu	37	1	223716526	223716526	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	223716526	223716526	G	T	SNP	CAPN8	ENST00000366872	human	ensembl	74_37	-1	known	missense	c.1966	p.L656I	0.998	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN8	HGNC	ENSG00000203697	tier1	-	-	57	0	0.00	40	24	37.50
ZNF391	0	genome.wustl.edu	37	6	27368642	27368642	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	6	27368642	27368642	T	C	SNP	ZNF391	ENST00000244576	human	ensembl	74_37	+1	known	missense	c.493	p.Y165H	0.906	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF391	HGNC	ENSG00000124613	tier1	-	-	25	0	0.00	20	9	31.03
TLR2	0	genome.wustl.edu	37	4	154626356	154626356	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	4	154626356	154626356	T	C	SNP	TLR2	ENST00000260010	human	ensembl	74_37	+1	known	missense	c.2297	p.M766T	0.000	pirsf_Toll-like_receptor,pfam_TIR_dom,superfamily_TIR_dom,smart_TIR_dom,pfscan_TIR_dom	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR2	HGNC	ENSG00000137462	tier1	-	-	43	0	0.00	18	18	50.00
RRP7B	0	genome.wustl.edu	37	22	42951979	42951979	+	RNA	SNP	C	C	G			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	22	42951979	42951979	C	G	SNP	RRP7B	ENST00000357802	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RRP7B	HGNC	ENSG00000182841	tier1	-	-	24	0	0.00	19	6	17.14
PSG1	0	genome.wustl.edu	37	19	43383883	43383883	+	RNA	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	19	43383883	43383883	C	T	SNP	PSG1	ENST00000601073	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	PSG1	HGNC	ENSG00000231924	tier1	-	-	35	0	0.00	47	5	9.62
MAP2K7	0	genome.wustl.edu	37	19	7976147	7976147	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	19	7976147	7976147	G	A	SNP	MAP2K7	ENST00000545011	human	ensembl	74_37	+1	known	missense	c.994	p.D332N	0.999	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP2K7	HGNC	ENSG00000076984	tier1	-	-	22	0	0.00	33	9	21.43
VPS13D	0	genome.wustl.edu	37	1	12335915	12335915	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	1	12335915	12335915	C	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.2270	p.A757E	0.136	NULL	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	tier1	-	-	42	0	0.00	44	4	8.33
SIX4	0	genome.wustl.edu	37	14	61180142	61180142	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	14	61180142	61180142	C	A	SNP	SIX4	ENST00000216513	human	ensembl	74_37	-1	known	missense	c.2329	p.D777Y	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX4	HGNC	ENSG00000100625	tier1	-	-	34	0	0.00	27	4	12.90
ARID2	0	genome.wustl.edu	37	12	46123649	46123649	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	12	46123649	46123649	G	-	DEL	ARID2	ENST00000334344	human	ensembl	74_37	+1	known	frame_shift_del	c.30	p.D11fs	1.000	NULL	pfam_ARID/BRIGHT_DNA-bd,pfam_DNA-bd_RFX,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID2	HGNC	ENSG00000189079	tier1			26	0	0.00	7	2	22.22
ANKRD30BP2	0	genome.wustl.edu	37	21	14418386	14418386	+	RNA	SNP	A	A	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	21	14418386	14418386	A	T	SNP	ANKRD30BP2	ENST00000507941	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ANKRD30BP2	HGNC	ENSG00000224309	tier1	rs201367790	-	23	0	0.00	31	6	16.22
HCN2	0	genome.wustl.edu	37	19	613914	613914	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	19	613914	613914	C	A	SNP	HCN2	ENST00000251287	human	ensembl	74_37	+1	known	missense	c.1888	p.L630I	1.000	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN2	HGNC	ENSG00000099822	tier1	-	-	48	0	0.00	46	4	8.00
EP400	0	genome.wustl.edu	37	12	132547141	132547141	+	Silent	SNP	G	G	A			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	12	132547141	132547141	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8337	p.Q2779	0.737	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	tier1	-	-	22	0	0.00	26	4	13.33
TEX37	0	genome.wustl.edu	37	2	88828633	88828633	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	2	88828633	88828633	C	T	SNP	TEX37	ENST00000303254	human	ensembl	74_37	+1	known	missense	c.184	p.P62S	0.987	NULL	NULL	-	no_errors	TEX37	HGNC	ENSG00000172073	tier1	-	-	38	0	0.00	29	16	34.78
MFGE8	0	genome.wustl.edu	37	15	89442651	89442651	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A48K-01A-11D-A307-09	TCGA-DX-A48K-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0ce6266b-1a84-4c5d-9e07-96b3e9957e4a	f0526221-b66f-4ead-ab8f-d5ce68caab49	15	89442651	89442651	A	G	SNP	MFGE8	ENST00000268150	human	ensembl	74_37	-1	known	missense	c.1139	p.L380P	1.000	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	MFGE8	HGNC	ENSG00000140545	tier1	-	-	66	0	0.00	44	4	8.33
