Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CDK5R1	0	genome.wustl.edu	37	17	30815527	30815527	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	17	30815527	30815527	G	T	SNP	CDK5R1	ENST00000313401	human	ensembl	74_37	+1	known	missense	c.889	p.D297Y	1.000	pirsf_CDK5_activator	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	-	no_errors	CDK5R1	HGNC	ENSG00000176749	tier1	-	-	42	0	0.00	45	7	13.46
ENSG00000260213	0	genome.wustl.edu	37	16	81058170	81058171	+	RNA	INS	-	-	CAACTCAGC			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	16	81058170	81058171	-	CAACTCAGC	INS	ENSG00000260213	ENST00000561808	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.047:0.001	-	-	-	no_errors	RP11-303E16.3	Clone_based_vega_gene	ENSG00000260213	tier1			NA	NA	NA	NA	NA	NA
POU3F1	0	genome.wustl.edu	37	1	38511693	38511693	+	Silent	SNP	C	C	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	38511693	38511693	C	T	SNP	POU3F1	ENST00000373012	human	ensembl	74_37	-1	known	silent	c.723	p.V241	1.000	pirsf_Transcription_factor_POU	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pirsf_Transcription_factor_POU,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU3F1	HGNC	ENSG00000185668	tier1	-	-	30	0	0.00	15	14	48.28
CEBPE	0	genome.wustl.edu	37	14	23586911	23586911	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	14	23586911	23586911	G	A	SNP	CEBPE	ENST00000206513	human	ensembl	74_37	-1	known	missense	c.631	p.R211W	1.000	pfam_bZIP,smart_bZIP,pirsf_CCAAT/enhancer-binding,pfscan_bZIP	pfam_bZIP,smart_bZIP,pirsf_CCAAT/enhancer-binding,pfscan_bZIP	-	no_errors	CEBPE	HGNC	ENSG00000092067	tier1	-	-	62	0	0.00	61	65	50.39
WRAP53	0	genome.wustl.edu	37	17	7592045	7592045	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	17	7592045	7592045	C	-	DEL	WRAP53	ENST00000316024	human	ensembl	74_37	+1	known	frame_shift_del	c.79	p.H28fs	0.345	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499	tier1			28	0	0.00	19	267	93.36
OR5P2	0	genome.wustl.edu	37	11	7818383	7818384	+	In_Frame_Ins	INS	-	-	ATATGGTTACCAGGTAGATGC			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	7818383	7818384	-	ATATGGTTACCAGGTAGATGC	INS	OR5P2	ENST00000329434	human	ensembl	74_37	-1	known	in_frame_ins	c.107_106	p.36in_frame_insCIYLVTI	0.001:0.001	pfam_7TM_GPCR_olfarory/Srsx,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5P2	HGNC	ENSG00000183303	tier1			NA	NA	NA	NA	NA	NA
PLB1	0	genome.wustl.edu	37	2	28855889	28855889	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	2	28855889	28855889	G	T	SNP	PLB1	ENST00000422425	human	ensembl	74_37	+1	known	missense	c.4048	p.A1350S	0.711	pfam_Lipase_GDSL	pfam_Lipase_GDSL	-	no_errors	PLB1	HGNC	ENSG00000163803	tier1	-	-	30	0	0.00	36	4	10.00
SLC22A17	0	genome.wustl.edu	37	14	23818512	23818512	+	Silent	SNP	A	A	G			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	14	23818512	23818512	A	G	SNP	SLC22A17	ENST00000206544	human	ensembl	74_37	-1	known	silent	c.495	p.L165	0.952	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A17	HGNC	ENSG00000092096	tier1	-	-	20	0	0.00	15	22	59.46
ENSG00000236662	0	genome.wustl.edu	37	10	102740287	102740287	+	RNA	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	10	102740287	102740287	G	T	SNP	ENSG00000236662	ENST00000447344	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-108L7.4	Clone_based_vega_gene	ENSG00000236662	tier1	-	-	18	0	0.00	14	4	22.22
STS	0	genome.wustl.edu	37	X	7171296	7171296	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	X	7171296	7171296	C	A	SNP	STS	ENST00000217961	human	ensembl	74_37	+1	known	missense	c.71	p.A24E	0.000	superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	STS	HGNC	ENSG00000101846	tier1	-	-	28	0	0.00	56	5	8.20
TPCN2	0	genome.wustl.edu	37	11	68839473	68839473	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	68839473	68839473	G	A	SNP	TPCN2	ENST00000294309	human	ensembl	74_37	+1	known	missense	c.1043	p.G348E	0.000	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN2	HGNC	ENSG00000162341	tier1	-	-	31	0	0.00	28	25	47.17
OBSCN	0	genome.wustl.edu	37	1	228520994	228520994	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	228520994	228520994	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.15826	p.R5276C	0.995	pfam_Ig_I-set,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	48	0	0.00	52	28	35.00
TIA1	0	genome.wustl.edu	37	2	70441617	70441617	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	2	70441617	70441617	T	-	DEL	TIA1	ENST00000433529	human	ensembl	74_37	-1	known	frame_shift_del	c.898	p.I300fs	1.000	NULL	pfam_RRM_dom,smart_RRM_dom_euk,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TIA1	HGNC	ENSG00000116001	tier1			22	0	0.00	10	38	79.17
TUBGCP6	0	genome.wustl.edu	37	22	50660945	50660945	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	22	50660945	50660945	G	T	SNP	TUBGCP6	ENST00000248846	human	ensembl	74_37	-1	known	missense	c.2347	p.Q783K	1.000	pfam_TUBGCP	pfam_TUBGCP	-	no_errors	TUBGCP6	HGNC	ENSG00000128159	tier1	-	-	14	0	0.00	10	4	28.57
TSKS	0	genome.wustl.edu	37	19	50249932	50249932	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	19	50249932	50249932	T	C	SNP	TSKS	ENST00000246801	human	ensembl	74_37	-1	known	missense	c.787	p.K263E	0.960	NULL	NULL	-	no_errors	TSKS	HGNC	ENSG00000126467	tier1	-	-	16	0	0.00	25	6	19.35
MKNK1	0	genome.wustl.edu	37	1	47042283	47042283	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	47042283	47042283	C	A	SNP	MKNK1	ENST00000371944	human	ensembl	74_37	-1	known	nonsense	c.67	p.E23*	1.000	smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pfscan_Prot_kinase_dom	-	no_errors	MKNK1	HGNC	ENSG00000079277	tier1	-	-	31	0	0.00	43	4	8.51
ENSG00000243008	0	genome.wustl.edu	37	13	25171259	25171259	+	RNA	SNP	A	A	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	13	25171259	25171259	A	T	SNP	ENSG00000243008	ENST00000453498	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.437	-	-	-	no_errors	RP11-556N21.1	Clone_based_vega_gene	ENSG00000243008	tier1	-	-	47	0	0.00	29	9	23.68
PMM1	0	genome.wustl.edu	37	22	41985119	41985119	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	22	41985119	41985119	G	T	SNP	PMM1	ENST00000414636	human	ensembl	74_37	-1	known	missense	c.136	p.H46N	0.000	NULL	superfamily_HAD-like_dom	-	no_errors	PMM1	HGNC	ENSG00000100417	tier1	-	-	31	0	0.00	15	4	21.05
NDFIP1	0	genome.wustl.edu	37	5	141511526	141511526	+	RNA	DEL	A	A	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	5	141511526	141511526	A	-	DEL	NDFIP1	ENST00000509436	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NDFIP1	HGNC	ENSG00000131507	tier1			11	0	0.00	14	4	22.22
KPNB1	0	genome.wustl.edu	37	17	45750492	45750492	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	17	45750492	45750492	G	T	SNP	KPNB1	ENST00000290158	human	ensembl	74_37	+1	known	missense	c.1656	p.L552F	0.952	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424	tier1	-	-	49	0	0.00	54	5	8.47
FAM115C	0	genome.wustl.edu	37	7	143417912	143417912	+	Silent	SNP	C	C	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	7	143417912	143417912	C	T	SNP	FAM115C	ENST00000409703	human	ensembl	74_37	+1	known	silent	c.1137	p.V379	0.092	NULL	NULL	-	no_errors	FAM115C	HGNC	ENSG00000170379	tier1	-	-	59	0	0.00	22	119	84.40
RPP30	0	genome.wustl.edu	37	10	92655547	92655547	+	RNA	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	10	92655547	92655547	G	T	SNP	RPP30	ENST00000479678	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RPP30	HGNC	ENSG00000148688	tier1	-	-	43	0	0.00	43	4	8.51
OTOG	0	genome.wustl.edu	37	11	17663399	17663399	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	17663399	17663399	G	T	SNP	OTOG	ENST00000399391	human	ensembl	74_37	+1	known	missense	c.8232	p.Q2744H	1.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_AbfB,pfam_TIL_dom,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom	-	no_errors	OTOG	HGNC	ENSG00000188162	tier1	-	-	40	0	0.00	26	4	13.33
PKD1	0	genome.wustl.edu	37	16	2159518	2159520	+	In_Frame_Del	DEL	CCG	CCG	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	CCG	CCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	16	2159518	2159520	CCG	-	DEL	PKD1	ENST00000262304	human	ensembl	74_37	-1	known	in_frame_del	c.5650_5648	p.A1883in_frame_del	1.000:1.000:1.000	superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom,tigrfam_Polycystin_cat	pfam_PKD_dom,pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_C-type_lectin,pfam_WSC_carb-bd,pfam_GPS_dom,superfamily_C-type_lectin_fold,superfamily_Lipase_LipOase,superfamily_PKD_dom,superfamily_Fe_hydrogenase,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_WSC_carb-bd_subgr,smart_PKD/Chitinase_dom,smart_C-type_lectin,smart_GPS_dom,smart_PLAT/LH2_dom,prints_PKD_1,pfscan_GPS_dom,pfscan_C-type_lectin,pfscan_PKD_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,pfscan_WSC_carb-bd,tigrfam_Polycystin_cat	-	no_errors	PKD1	HGNC	ENSG00000008710	tier1			63	0	0.00	53	28	34.57
GLB1L2	0	genome.wustl.edu	37	11	134241002	134241002	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	134241002	134241002	C	A	SNP	GLB1L2	ENST00000339772	human	ensembl	74_37	+1	known	nonsense	c.1316	p.S439*	0.000	NULL	pfam_Glycoside_Hdrlase_35,pfam_Glyco_hydro_42_N,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,prints_Glycoside_Hdrlase_35	-	no_errors	GLB1L2	HGNC	ENSG00000149328	tier1	-	-	30	0	0.00	2	23	92.00
MUC4	0	genome.wustl.edu	37	3	195513948	195513948	+	Silent	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	3	195513948	195513948	G	A	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.4503	p.H1501	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	42	0	0.00	29	18	38.30
KIAA1109	0	genome.wustl.edu	37	4	123175371	123175371	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	4	123175371	123175371	G	A	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.5944	p.D1982N	1.000	NULL	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	tier1	-	-	53	0	0.00	43	7	14.00
MAP4K5	0	genome.wustl.edu	37	14	50952895	50952895	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	14	50952895	50952895	T	C	SNP	MAP4K5	ENST00000013125	human	ensembl	74_37	-1	known	missense	c.184	p.I62V	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Citron,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_dom	-	no_errors	MAP4K5	HGNC	ENSG00000012983	tier1	-	-	23	0	0.00	32	16	33.33
RB1	0	genome.wustl.edu	37	13	48954327	48954328	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	13	48954327	48954328	AT	-	DEL	RB1	ENST00000267163	human	ensembl	74_37	+1	known	frame_shift_del	c.1448_1449	p.M484fs	1.000:1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1			33	0	0.00	2	25	92.59
DAK	0	genome.wustl.edu	37	11	61113888	61113888	+	Silent	SNP	C	C	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	61113888	61113888	C	T	SNP	DAK	ENST00000394900	human	ensembl	74_37	+1	known	silent	c.1641	p.I547	1.000	pfam_DhaL_dom,superfamily_DhaL_dom,tigrfam_DhaK_ATP	pfam_Dak1,pfam_DhaL_dom,superfamily_DhaL_dom,tigrfam_DhaK_ATP	-	no_errors	DAK	HGNC	ENSG00000149476	tier1	-	-	22	0	0.00	23	23	50.00
WRAP53	0	genome.wustl.edu	37	17	7592319	7592319	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	17	7592319	7592319	C	T	SNP	WRAP53	ENST00000316024	human	ensembl	74_37	+1	known	missense	c.353	p.A118V	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WRAP53	HGNC	ENSG00000141499	tier1	-	-	19	0	0.00	2	48	96.00
SPECC1	0	genome.wustl.edu	37	17	20209353	20209353	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	17	20209353	20209353	G	T	SNP	SPECC1	ENST00000261503	human	ensembl	74_37	+1	known	missense	c.3075	p.L1025F	1.000	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487	tier1	-	-	33	0	0.00	67	9	11.84
ENSG00000214105	0	genome.wustl.edu	37	17	77681427	77681427	+	RNA	SNP	T	T	C			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	17	77681427	77681427	T	C	SNP	ENSG00000214105	ENST00000397549	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-2116F7.1	Clone_based_vega_gene	ENSG00000214105	tier1	-	-	29	0	0.00	43	5	10.42
ENSG00000213132	0	genome.wustl.edu	37	3	187896990	187896990	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	3	187896990	187896990	T	C	SNP	ENSG00000213132	ENST00000392468	human	ensembl	74_37	+1	known	missense	c.19	p.F7L	0.010	NULL	NULL	-	no_errors	AC022498.1	Clone_based_ensembl_gene	ENSG00000213132	tier1	-	-	30	0	0.00	24	24	50.00
SHROOM4	0	genome.wustl.edu	37	X	50350758	50350759	+	In_Frame_Ins	INS	-	-	TGCTGCTGCTGT			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	X	50350758	50350759	-	TGCTGCTGCTGT	INS	SHROOM4	ENST00000289292	human	ensembl	74_37	-1	known	in_frame_ins	c.3384_3383	p.1129in_frame_insQQQQ	0.000:0.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	tier1			NA	NA	NA	NA	NA	NA
CITED1	0	genome.wustl.edu	37	X	71521928	71521928	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	X	71521928	71521928	G	T	SNP	CITED1	ENST00000431381	human	ensembl	74_37	-1	known	missense	c.305	p.P102H	0.352	pfam_CITED	pfam_CITED	-	no_errors	CITED1	HGNC	ENSG00000125931	tier1	-	-	46	0	0.00	53	7	11.67
ZFR	0	genome.wustl.edu	37	5	32355672	32355672	+	RNA	DEL	T	T	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	5	32355672	32355672	T	-	DEL	ZFR	ENST00000510369	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	ZFR	HGNC	ENSG00000056097	tier1			27	0	0.00	42	4	8.70
GDPD2	0	genome.wustl.edu	37	X	69646531	69646531	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	X	69646531	69646531	G	A	SNP	GDPD2	ENST00000453994	human	ensembl	74_37	+1	known	missense	c.496	p.A166T	0.024	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055	tier1	-	-	32	0	0.00	45	5	10.00
DMD	0	genome.wustl.edu	37	X	31515003	31515003	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	X	31515003	31515003	G	A	SNP	DMD	ENST00000357033	human	ensembl	74_37	-1	known	missense	c.8449	p.L2817F	1.000	smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_dom,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_dom,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	tier1	-	-	35	0	0.00	32	26	44.83
FBXO9	0	genome.wustl.edu	37	6	52957553	52957553	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	6	52957553	52957553	C	T	SNP	FBXO9	ENST00000244426	human	ensembl	74_37	+1	known	missense	c.824	p.T275I	0.896	superfamily_F-box_dom	pfam_F-box_dom,superfamily_F-box_dom,pfscan_F-box_dom	-	no_errors	FBXO9	HGNC	ENSG00000112146	tier1	-	-	40	0	0.00	50	8	13.79
PRDM2	0	genome.wustl.edu	37	1	14106018	14106018	+	Silent	SNP	T	T	G			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	14106018	14106018	T	G	SNP	PRDM2	ENST00000235372	human	ensembl	74_37	+1	known	silent	c.1728	p.T576	1.000	pirsf_RIZ_retinblastoma-bd_prot	pfam_SET_dom,smart_SET_dom,smart_Znf_C2H2-like,pirsf_RIZ_retinblastoma-bd_prot,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM2	HGNC	ENSG00000116731	tier1	-	-	25	0	0.00	26	22	45.83
CDK5R1	0	genome.wustl.edu	37	17	30815538	30815538	+	Silent	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	17	30815538	30815538	G	T	SNP	CDK5R1	ENST00000313401	human	ensembl	74_37	+1	known	silent	c.900	p.R300	1.000	pirsf_CDK5_activator	pfam_CDK5_activator,superfamily_Cyclin-like,pirsf_CDK5_activator	-	no_errors	CDK5R1	HGNC	ENSG00000176749	tier1	-	-	49	0	0.00	50	5	9.09
IPO9	0	genome.wustl.edu	37	1	201821260	201821260	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	201821260	201821260	G	T	SNP	IPO9	ENST00000361565	human	ensembl	74_37	+1	known	missense	c.543	p.Q181H	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N,pfscan_Importin-beta_N	-	no_errors	IPO9	HGNC	ENSG00000198700	tier1	-	-	35	0	0.00	42	4	8.70
SCN2A	0	genome.wustl.edu	37	2	166245346	166245346	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	2	166245346	166245346	T	A	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.5030	p.F1677Y	1.000	pfam_Ion_trans_dom,pfam_PKD1_2_channel	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	tier1	-	-	83	0	0.00	121	114	48.51
PI4KA	0	genome.wustl.edu	37	22	21084191	21084191	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	22	21084191	21084191	G	T	SNP	PI4KA	ENST00000255882	human	ensembl	74_37	-1	known	missense	c.4397	p.S1466Y	1.000	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PI4KA	HGNC	ENSG00000241973	tier1	-	-	32	0	0.00	45	4	8.16
HPDL	0	genome.wustl.edu	37	1	45793456	45793456	+	Silent	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	45793456	45793456	G	T	SNP	HPDL	ENST00000334815	human	ensembl	74_37	+1	known	silent	c.636	p.L212	0.810	pirsf_4OHPhenylPyrv_dOase	pirsf_4OHPhenylPyrv_dOase	-	no_errors	HPDL	HGNC	ENSG00000186603	tier1	-	-	32	0	0.00	36	4	10.00
AUTS2	0	genome.wustl.edu	37	7	70254924	70254924	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	7	70254924	70254924	G	T	SNP	AUTS2	ENST00000342771	human	ensembl	74_37	+1	known	nonsense	c.2722	p.E908*	0.999	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	tier1	-	-	20	0	0.00	23	5	17.86
RHPN2	0	genome.wustl.edu	37	19	33487092	33487092	+	Silent	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	19	33487092	33487092	G	A	SNP	RHPN2	ENST00000254260	human	ensembl	74_37	-1	known	silent	c.1260	p.H420	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfam_HR1_rho-bd,superfamily_HR1_rho-bd,superfamily_PDZ,smart_HR1_rho-bd,smart_PDZ,pfscan_BRO1_dom	-	no_errors	RHPN2	HGNC	ENSG00000131941	tier1	-	-	28	0	0.00	37	11	22.92
PLCZ1	0	genome.wustl.edu	37	12	18854541	18854552	+	In_Frame_Del	DEL	TCCTCCTCCTCC	TCCTCCTCCTCC	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	TCCTCCTCCTCC	TCCTCCTCCTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	12	18854541	18854552	TCCTCCTCCTCC	-	DEL	PLCZ1	ENST00000538330	human	ensembl	74_37	-1	putative	in_frame_del	c.257_246	p.EEEE82in_frame_del	0.019:0.025:0.029:0.032:0.034:0.034:0.032:0.029:0.024:0.025:0.024:0.021	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_Pinositol-sp_Y,pfam_C2_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pfscan_C2_dom,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCZ1	HGNC	ENSG00000139151	tier1			NA	NA	NA	NA	NA	NA
CWC15	0	genome.wustl.edu	37	11	94696474	94696475	+	RNA	INS	-	-	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	94696474	94696475	-	A	INS	CWC15	ENST00000545018	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CWC15	HGNC	ENSG00000150316	tier1			19	0	0.00	12	11	47.83
PLXNB3	0	genome.wustl.edu	37	X	153038688	153038688	+	Silent	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	X	153038688	153038688	G	T	SNP	PLXNB3	ENST00000538966	human	ensembl	74_37	+1	known	silent	c.2979	p.L993	0.371	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Plexin_repeat,pfam_Semap_dom,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB3	HGNC	ENSG00000198753	tier1	-	-	54	0	0.00	43	4	8.51
ZNF335	0	genome.wustl.edu	37	20	44596263	44596263	+	Silent	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	20	44596263	44596263	G	A	SNP	ZNF335	ENST00000322927	human	ensembl	74_37	-1	known	silent	c.825	p.A275	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF335	HGNC	ENSG00000198026	tier1	-	-	37	0	0.00	67	13	16.25
C10orf76	0	genome.wustl.edu	37	10	103771512	103771512	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	10	103771512	103771512	G	T	SNP	C10orf76	ENST00000370033	human	ensembl	74_37	-1	known	missense	c.799	p.Q267K	1.000	superfamily_ARM-type_fold	pfam_DUF1741,superfamily_ARM-type_fold	-	no_errors	C10orf76	HGNC	ENSG00000120029	tier1	-	-	33	0	0.00	18	8	30.77
ZNF595	0	genome.wustl.edu	37	4	86907	86907	+	RNA	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	4	86907	86907	G	T	SNP	ZNF595	ENST00000339368	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	tier1	-	-	16	0	0.00	3	23	88.46
PKHD1L1	0	genome.wustl.edu	37	8	110456116	110456116	+	Silent	SNP	C	C	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	8	110456116	110456116	C	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	silent	c.4776	p.L1592	0.689	pfam_IPT,superfamily_Ig_E-set,smart_IPT	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	tier1	-	-	39	0	0.00	21	25	54.35
B3GALTL	0	genome.wustl.edu	37	13	31797114	31797114	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	13	31797114	31797114	G	T	SNP	B3GALTL	ENST00000343307	human	ensembl	74_37	+1	known	missense	c.146	p.R49M	0.002	NULL	pfam_Fringe-like	-	no_errors	B3GALTL	HGNC	ENSG00000187676	tier1	-	-	34	0	0.00	32	4	11.11
CD47	0	genome.wustl.edu	37	3	107764407	107764407	+	RNA	DEL	T	T	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	3	107764407	107764407	T	-	DEL	CD47	ENST00000471694	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CD47	HGNC	ENSG00000196776	tier1			27	0	0.00	27	3	10.00
HDAC4	0	genome.wustl.edu	37	2	240016733	240016733	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	2	240016733	240016733	G	T	SNP	HDAC4	ENST00000345617	human	ensembl	74_37	-1	known	missense	c.2238	p.F746L	0.191	pfam_His_deacetylse_dom,pirsf_Histone_deAcase_II_euk	pfam_His_deacetylse_dom,pfam_Hist_deacetylase_Gln_rich_N,pfam_Arb2_domain,pirsf_Histone_deAcase_II_euk,prints_His_deacetylse	-	no_errors	HDAC4	HGNC	ENSG00000068024	tier1	-	-	39	0	0.00	35	7	16.67
CAMKK2	0	genome.wustl.edu	37	12	121678327	121678328	+	In_Frame_Ins	INS	-	-	TTT			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	12	121678327	121678328	-	TTT	INS	CAMKK2	ENST00000392474	human	ensembl	74_37	-1	known	in_frame_ins	c.1615_1614	p.538in_frame_insK	0.005:0.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK2	HGNC	ENSG00000110931	tier1			35	0	0.00	36	7	16.28
SEPN1	0	genome.wustl.edu	37	1	26138259	26138259	+	Silent	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	26138259	26138259	G	T	SNP	SEPN1	ENST00000354177	human	ensembl	74_37	+1	known	silent	c.1068	p.L356	0.977	NULL	pfscan_EF_hand_dom	-	no_errors	SEPN1	HGNC	ENSG00000162430	tier1	-	-	37	0	0.00	36	4	10.00
PHF23	0	genome.wustl.edu	37	17	7139463	7139464	+	In_Frame_Ins	INS	-	-	TCTTCTTCT			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	17	7139463	7139464	-	TCTTCTTCT	INS	PHF23	ENST00000320316	human	ensembl	74_37	-1	known	in_frame_ins	c.783_782	p.262in_frame_insEEE	0.339:0.962	NULL	pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Znf_PHD	-	no_errors	PHF23	HGNC	ENSG00000040633	tier1			NA	NA	NA	NA	NA	NA
DBIL5P	0	genome.wustl.edu	37	17	656793	656793	+	RNA	SNP	T	T	C			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	17	656793	656793	T	C	SNP	DBIL5P	ENST00000536214	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DBIL5P	HGNC	ENSG00000231784	tier1	-	-	18	0	0.00	1	23	95.83
CFH	0	genome.wustl.edu	37	1	196695646	196695646	+	Silent	SNP	T	T	C			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	196695646	196695646	T	C	SNP	CFH	ENST00000367429	human	ensembl	74_37	+1	known	silent	c.1920	p.N640	0.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFH	HGNC	ENSG00000000971	tier1	-	-	34	0	0.00	21	16	43.24
MEX3C	0	genome.wustl.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	GCCGCCGCG	GCCGCCGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	18	48723146	48723154	GCCGCCGCG	-	DEL	MEX3C	ENST00000406189	human	ensembl	74_37	-1	known	in_frame_del	c.545_537	p.AAA182in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997	NULL	pfam_KH_dom_type_1,smart_KH_dom,smart_Znf_RING,pfscan_Znf_RING,pfscan_KH_dom_type_1	-	no_errors	MEX3C	HGNC	ENSG00000176624	tier1			NA	NA	NA	NA	NA	NA
CABLES1	0	genome.wustl.edu	37	18	20716015	20716023	+	In_Frame_Del	DEL	GGCGCCGGC	GGCGCCGGC	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	GGCGCCGGC	GGCGCCGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	18	20716015	20716023	GGCGCCGGC	-	DEL	CABLES1	ENST00000256925	human	ensembl	74_37	+1	known	in_frame_del	c.289_297	p.GGA99in_frame_del	0.983:0.981:0.990:0.998:0.999:0.997:0.999:0.999:0.997	pirsf_Cdk5/c-Abl_linker_Cables	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	-	no_errors	CABLES1	HGNC	ENSG00000134508	tier1			NA	NA	NA	NA	NA	NA
ATOH8	0	genome.wustl.edu	37	2	85991284	85991284	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	2	85991284	85991284	G	T	SNP	ATOH8	ENST00000306279	human	ensembl	74_37	+1	known	missense	c.939	p.E313D	1.000	superfamily_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	ATOH8	HGNC	ENSG00000168874	tier1	-	-	34	0	0.00	42	4	8.51
NAV2-AS1	0	genome.wustl.edu	37	11	20141368	20141368	+	RNA	DEL	A	A	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	20141368	20141368	A	-	DEL	NAV2-AS1	ENST00000526642	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NAV2-AS1	HGNC	ENSG00000254894	tier1			30	0	0.00	23	2	8.00
GPRIN1	0	genome.wustl.edu	37	5	176025351	176025351	+	Silent	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	5	176025351	176025351	G	A	SNP	GPRIN1	ENST00000303991	human	ensembl	74_37	-1	known	silent	c.1485	p.G495	0.000	NULL	NULL	-	no_errors	GPRIN1	HGNC	ENSG00000169258	tier1	rs147157849	GMAF=0.0005	26	0	0.00	13	13	48.15
HMGN5	0	genome.wustl.edu	37	X	80371790	80371790	+	Silent	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	X	80371790	80371790	G	T	SNP	HMGN5	ENST00000358130	human	ensembl	74_37	-1	known	silent	c.180	p.A60	0.020	pfam_HMGN_fam,smart_HMGN_fam	pfam_HMGN_fam,smart_HMGN_fam,prints_HMGN_fam	-	no_errors	HMGN5	HGNC	ENSG00000198157	tier1	-	-	41	0	0.00	49	5	9.26
RICTOR	0	genome.wustl.edu	37	5	38959431	38959432	+	RNA	INS	-	-	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	5	38959431	38959432	-	A	INS	RICTOR	ENST00000503698	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.004	-	-	-	no_errors	RICTOR	HGNC	ENSG00000164327	tier1			17	0	0.00	39	8	17.02
PARP3	0	genome.wustl.edu	37	3	51979084	51979084	+	Silent	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	3	51979084	51979084	G	A	SNP	PARP3	ENST00000398755	human	ensembl	74_37	+1	known	silent	c.726	p.A242	0.000	pfam_Poly(ADP-ribose)pol_reg_dom,superfamily_Poly(ADP-ribose)pol_reg_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880	tier1	-	-	48	0	0.00	44	4	8.33
LOC101927806	0	genome.wustl.edu	37	1	17198929	17198929	+	RNA	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	17198929	17198929	G	A	SNP	LOC101927806	ENST00000438002	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.025	-	-	-	no_errors	U1	RFAM	ENSG00000228549	tier1	rs7517060	-	10	0	0.00	10	7	41.18
GRHPR	0	genome.wustl.edu	37	9	37430971	37430971	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	9	37430971	37430971	G	T	SNP	GRHPR	ENST00000494290	human	ensembl	74_37	+1	known	missense	c.633	p.E211D	0.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd	-	no_errors	GRHPR	HGNC	ENSG00000137106	tier1	-	-	28	0	0.00	46	4	8.00
ENSG00000234722	0	genome.wustl.edu	37	7	153110008	153110008	+	RNA	SNP	A	A	G			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	7	153110008	153110008	A	G	SNP	ENSG00000234722	ENST00000416982	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.157	-	-	-	no_errors	AC073236.3	Clone_based_vega_gene	ENSG00000234722	tier1	rs112770540	-	41	0	0.00	90	8	8.16
FAM209A	0	genome.wustl.edu	37	20	55093355	55093355	+	Splice_Site	SNP	T	T	G			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	20	55093355	55093355	T	G	SNP	FAM209A	ENST00000481560	human	ensembl	74_37	+1	known	splice_site	c.NULL	NULL	0.000	-	-	-	no_errors	FAM209A	HGNC	ENSG00000124103	tier1	-	-	15	0	0.00	17	21	55.26
TPTE2	0	genome.wustl.edu	37	13	19999954	19999955	+	Frame_Shift_Ins	INS	-	-	GCGAA			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	13	19999954	19999955	-	GCGAA	INS	TPTE2	ENST00000462409	human	ensembl	74_37	-1	known	frame_shift_ins	c.929_928	p.Q310fs	0.013:0.001	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ	-	no_errors	TPTE2	HGNC	ENSG00000132958	tier1			NA	NA	NA	NA	NA	NA
WDR66	0	genome.wustl.edu	37	12	122359408	122359408	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	12	122359408	122359408	G	A	SNP	WDR66	ENST00000288912	human	ensembl	74_37	+1	known	missense	c.197	p.G66E	0.003	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	tier1	rs12824001	-	8	0	0.00	10	8	44.44
CAT	0	genome.wustl.edu	37	11	34490058	34490058	+	RNA	DEL	A	A	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	34490058	34490058	A	-	DEL	CAT	ENST00000525707	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	CAT	HGNC	ENSG00000121691	tier1			10	0	0.00	10	2	16.67
UTP20	0	genome.wustl.edu	37	12	101748897	101748897	+	Splice_Site	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	12	101748897	101748897	G	T	SNP	UTP20	ENST00000261637	human	ensembl	74_37	+1	known	splice_site	c.5394+1	e41+1	1.000	-	-	-	no_errors	UTP20	HGNC	ENSG00000120800	tier1	-	-	21	0	0.00	20	4	16.67
NUP98	0	genome.wustl.edu	37	11	3704442	3704442	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	3704442	3704442	G	T	SNP	NUP98	ENST00000324932	human	ensembl	74_37	-1	known	missense	c.4906	p.H1636N	0.999	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	tier1	-	-	44	0	0.00	41	4	8.89
RBBP8	0	genome.wustl.edu	37	18	20596862	20596862	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	18	20596862	20596862	G	T	SNP	RBBP8	ENST00000327155	human	ensembl	74_37	+1	known	missense	c.2429	p.G810V	1.000	pfam_DNA-repair_Sae2/CtIP	pfam_CtIP_N,pfam_DNA-repair_Sae2/CtIP	-	no_errors	RBBP8	HGNC	ENSG00000101773	tier1	-	-	32	0	0.00	47	9	16.07
GART	0	genome.wustl.edu	37	21	34904725	34904725	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	21	34904725	34904725	G	T	SNP	GART	ENST00000381815	human	ensembl	74_37	-1	known	missense	c.454	p.L152I	1.000	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C_dom,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth_N_dom,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131	tier1	-	-	35	0	0.00	53	5	8.62
PIAS1	0	genome.wustl.edu	37	15	68438944	68438944	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	15	68438944	68438944	G	T	SNP	PIAS1	ENST00000249636	human	ensembl	74_37	+1	known	missense	c.734	p.R245L	1.000	NULL	pfam_Znf_MIZ,smart_SAP_dom,pfscan_Znf_MIZ,pfscan_SAP_dom	-	no_errors	PIAS1	HGNC	ENSG00000033800	tier1	-	-	33	0	0.00	63	10	13.70
CASC2	0	genome.wustl.edu	37	10	119966166	119966169	+	RNA	DEL	TGTA	TGTA	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	TGTA	TGTA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	10	119966166	119966169	TGTA	-	DEL	CASC2	ENST00000414722	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.000:0.000:0.001	-	-	-	no_errors	CASC2	HGNC	ENSG00000177640	tier1			17	0	0.00	18	4	18.18
NRXN1	0	genome.wustl.edu	37	2	50147836	50147847	+	RNA	DEL	GTGTGTGTGTGT	GTGTGTGTGTGT	-			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	GTGTGTGTGTGT	GTGTGTGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	2	50147836	50147847	GTGTGTGTGTGT	-	DEL	NRXN1	ENST00000484192	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001:0.005:0.106:0.113:0.127:0.107:0.109:0.093:0.096:0.025:0.055	-	-	-	no_errors	NRXN1	HGNC	ENSG00000179915	tier1			NA	NA	NA	NA	NA	NA
TRAPPC11	0	genome.wustl.edu	37	4	184629623	184629623	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	4	184629623	184629623	G	A	SNP	TRAPPC11	ENST00000334690	human	ensembl	74_37	+1	known	missense	c.3253	p.A1085T	1.000	pfam_DUF1683_C	pfam_Foie-gras_1,pfam_DUF1683_C	-	no_errors	TRAPPC11	HGNC	ENSG00000168538	tier1	-	-	50	0	0.00	43	4	8.51
SIGMAR1	0	genome.wustl.edu	37	9	34636875	34636875	+	RNA	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	9	34636875	34636875	G	T	SNP	SIGMAR1	ENST00000478146	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SIGMAR1	HGNC	ENSG00000147955	tier1	-	-	29	0	0.00	27	4	12.90
ARHGEF6	0	genome.wustl.edu	37	X	135827388	135827388	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	X	135827388	135827388	C	A	SNP	ARHGEF6	ENST00000250617	human	ensembl	74_37	-1	known	missense	c.453	p.K151N	0.996	superfamily_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_CH-domain,pfam_Pleckstrin_homology,pfam_CAMSAP_CH,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain,prints_SH3_domain,prints_SM22_calponin	-	no_errors	ARHGEF6	HGNC	ENSG00000129675	tier1	-	-	26	0	0.00	63	14	18.18
HERC2P3	0	genome.wustl.edu	37	15	20666508	20666508	+	RNA	SNP	C	C	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	15	20666508	20666508	C	T	SNP	HERC2P3	ENST00000428453	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HERC2P3	HGNC	ENSG00000180229	tier1	-	-	65	0	0.00	102	34	25.00
RIMS2	0	genome.wustl.edu	37	8	104930695	104930695	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	8	104930695	104930695	C	A	SNP	RIMS2	ENST00000406091	human	ensembl	74_37	+1	known	missense	c.2063	p.T688K	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	tier1	-	-	20	0	0.00	23	4	14.81
SNORD109A	0	genome.wustl.edu	37	15	25287085	25287085	+	RNA	SNP	T	T	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	15	25287085	25287085	T	A	SNP	SNORD109A	ENST00000604135	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.839	-	-	-	no_errors	SNORD109A	HGNC	ENSG00000270246	tier1	-	-	44	0	0.00	78	47	37.60
ABCC12	0	genome.wustl.edu	37	16	48149490	48149490	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	16	48149490	48149490	G	T	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	missense	c.1825	p.Q609K	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798	tier1	-	-	32	0	0.00	27	6	18.18
GPR137B	0	genome.wustl.edu	37	1	236343299	236343299	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	236343299	236343299	G	C	SNP	GPR137B	ENST00000366592	human	ensembl	74_37	+1	known	missense	c.808	p.D270H	1.000	NULL	NULL	-	no_errors	GPR137B	HGNC	ENSG00000077585	tier1	-	-	22	0	0.00	19	17	47.22
EYS	0	genome.wustl.edu	37	6	66045003	66045003	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	6	66045003	66045003	C	G	SNP	EYS	ENST00000370616	human	ensembl	74_37	-1	known	missense	c.1636	p.D546H	0.249	NULL	pfam_Laminin_G,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	tier1	-	-	12	0	0.00	25	10	28.57
ZDBF2	0	genome.wustl.edu	37	2	207173373	207173373	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	2	207173373	207173373	T	C	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	missense	c.4121	p.F1374S	0.022	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	tier1	-	-	27	0	0.00	2	50	96.15
YES1	0	genome.wustl.edu	37	18	736829	736829	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	18	736829	736829	T	A	SNP	YES1	ENST00000314574	human	ensembl	74_37	-1	known	missense	c.1270	p.N424Y	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	YES1	HGNC	ENSG00000176105	tier1	-	-	34	0	0.00	26	34	56.67
ENTPD4	0	genome.wustl.edu	37	8	23290607	23290607	+	Silent	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	8	23290607	23290607	G	T	SNP	ENTPD4	ENST00000358689	human	ensembl	74_37	-1	known	silent	c.1683	p.V561	1.000	NULL	pfam_GDA1_CD39_NTPase	-	no_errors	ENTPD4	HGNC	ENSG00000197217	tier1	-	-	66	0	0.00	87	9	9.28
SPRTN	0	genome.wustl.edu	37	1	231475793	231475794	+	RNA	INS	-	-	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	231475793	231475794	-	A	INS	SPRTN	ENST00000492437	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	SPRTN	HGNC	ENSG00000010072	tier1			14	0	0.00	10	3	23.08
ZP1	0	genome.wustl.edu	37	11	60643004	60643004	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	11	60643004	60643004	A	G	SNP	ZP1	ENST00000278853	human	ensembl	74_37	+1	known	missense	c.1792	p.S598G	0.000	NULL	pfam_ZP_dom,superfamily_P_trefoil,smart_P_trefoil,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP1	HGNC	ENSG00000149506	tier1	-	-	36	0	0.00	43	4	8.51
EPHA2	0	genome.wustl.edu	37	1	16458297	16458297	+	Silent	SNP	G	G	A			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	1	16458297	16458297	G	A	SNP	EPHA2	ENST00000358432	human	ensembl	74_37	-1	known	silent	c.2394	p.S798	0.865	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA2	HGNC	ENSG00000142627	tier1	-	-	39	0	0.00	40	4	9.09
SDAD1	0	genome.wustl.edu	37	4	76894479	76894479	+	Silent	SNP	G	G	T			TCGA-DX-A48L-01A-11D-A307-09	TCGA-DX-A48L-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f55dccaa-44da-4482-93a8-7853325f5bea	b83395ce-e95f-4de3-a722-0e785b4e2887	4	76894479	76894479	G	T	SNP	SDAD1	ENST00000356260	human	ensembl	74_37	-1	known	silent	c.702	p.S234	0.859	superfamily_ARM-type_fold	pfam_SDA1_dom,pfam_Uncharacterised_NUC130/133_N,superfamily_ARM-type_fold	-	no_errors	SDAD1	HGNC	ENSG00000198301	tier1	-	-	25	0	0.00	25	4	13.79
