Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
USH2A	0	genome.wustl.edu	37	1	216172255	216172255	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	1	216172255	216172255	C	T	SNP	USH2A	ENST00000366943	human	ensembl	74_37	-1	known	missense	c.6631	p.G2211S	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	tier1	-	-	86	0	0.00	92	59	39.07
MIR3118-6	0	genome.wustl.edu	37	15	22049316	22049316	+	RNA	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	15	22049316	22049316	G	A	SNP	MIR3118-6	ENST00000582779	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.145	-	-	-	no_errors	MIR3118-6	HGNC	ENSG00000265793	tier1	-	-	9	0	0.00	18	11	37.93
STARD9	0	genome.wustl.edu	37	15	42979664	42979664	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	15	42979664	42979664	C	T	SNP	STARD9	ENST00000290607	human	ensembl	74_37	+1	known	missense	c.5888	p.A1963V	0.000	NULL	pfam_Kinesin_motor_dom,pfam_START_lipid-bd_dom,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_START_lipid-bd_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	STARD9	HGNC	ENSG00000159433	tier1	-	-	30	0	0.00	37	8	17.78
PRDM9	0	genome.wustl.edu	37	5	23523452	23523452	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	5	23523452	23523452	G	T	SNP	PRDM9	ENST00000296682	human	ensembl	74_37	+1	known	missense	c.935	p.W312L	0.004	pfscan_SET_dom	pfam_Znf_C2H2,pfam_SSXRD_motif,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	PRDM9	HGNC	ENSG00000164256	tier1	-	-	96	0	0.00	102	94	47.96
SDK1	0	genome.wustl.edu	37	7	4169604	4169604	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	7	4169604	4169604	C	T	SNP	SDK1	ENST00000404826	human	ensembl	74_37	+1	known	missense	c.4004	p.T1335M	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK1	HGNC	ENSG00000146555	tier1	rs140791078	-	61	0	0.00	58	21	26.58
HSD17B1	0	genome.wustl.edu	37	17	40705589	40705589	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	17	40705589	40705589	G	A	SNP	HSD17B1	ENST00000585807	human	ensembl	74_37	+1	known	missense	c.398	p.R133H	0.329	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pirsf_17beta_DH,prints_Glc/ribitol_DH,prints_DHB_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B1	HGNC	ENSG00000108786	tier1	-	-	118	0	0.00	187	24	11.37
NSMAF	0	genome.wustl.edu	37	8	59499075	59499075	+	Silent	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	8	59499075	59499075	G	A	SNP	NSMAF	ENST00000427130	human	ensembl	74_37	-1	known	silent	c.2481	p.T827	0.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_BEACH_dom,pfam_WD40_repeat,pfam_GRAM,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_GRAM,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	NSMAF	HGNC	ENSG00000035681	tier1	-	-	125	0	0.00	140	85	37.78
KANK3	0	genome.wustl.edu	37	19	8398950	8398961	+	In_Frame_Del	DEL	TCGCTGTCGCCA	TCGCTGTCGCCA	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	TCGCTGTCGCCA	TCGCTGTCGCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	19	8398950	8398961	TCGCTGTCGCCA	-	DEL	KANK3	ENST00000593649	human	ensembl	74_37	-1	known	in_frame_del	c.1478_1467	p.DGDS489in_frame_del	0.002:0.046:0.028:0.025:0.017:0.004:0.003:0.002:0.000:0.001:0.003:0.001	NULL	pfam_Ankyrin_rpt,pfam_KN_motif,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	KANK3	HGNC	ENSG00000186994	tier1			NA	NA	NA	NA	NA	NA
PMF1	0	genome.wustl.edu	37	1	156195368	156195396	+	Frame_Shift_Del	DEL	ACGGAAGTGCTGGTCCCCGCCTGCCCTCT	ACGGAAGTGCTGGTCCCCGCCTGCCCTCT	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	ACGGAAGTGCTGGTCCCCGCCTGCCCTCT	ACGGAAGTGCTGGTCCCCGCCTGCCCTCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	1	156195368	156195396	ACGGAAGTGCTGGTCCCCGCCTGCCCTCT	-	DEL	PMF1	ENST00000368273	human	ensembl	74_37	+1	known	frame_shift_del	c.182_210	p.D61fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.440:0.512:0.591:0.968:0.997:1.000:0.999:0.988:0.964:0.869	NULL	pfam_Nnf1	-	no_errors	PMF1	HGNC	ENSG00000160783	tier1			NA	NA	NA	NA	NA	NA
MT-TF	0	genome.wustl.edu	37	MT	617	617	+	RNA	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	MT	617	617	G	A	SNP	MT-TF	ENST00000387314	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-TF	HGNC	ENSG00000210049	tier1	-	-	341	0	0.00	227	284	55.58
CBX7	0	genome.wustl.edu	37	22	39516197	39516198	+	RNA	INS	-	-	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	22	39516197	39516198	-	T	INS	CBX7	ENST00000475962	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.190:0.272	-	-	-	no_errors	CBX7	HGNC	ENSG00000100307	tier1			11	0	0.00	12	4	25.00
POU6F2	0	genome.wustl.edu	37	7	39247149	39247149	+	Silent	SNP	C	C	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	7	39247149	39247149	C	A	SNP	POU6F2	ENST00000403058	human	ensembl	74_37	+1	known	silent	c.441	p.T147	1.000	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU6F2	HGNC	ENSG00000106536	tier1	-	-	38	0	0.00	44	20	31.25
GPC6	0	genome.wustl.edu	37	13	94482415	94482415	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	13	94482415	94482415	C	T	SNP	GPC6	ENST00000377047	human	ensembl	74_37	+1	known	nonsense	c.328	p.R110*	1.000	pfam_Glypican	pfam_Glypican	-	no_errors	GPC6	HGNC	ENSG00000183098	tier1	-	-	90	0	0.00	163	27	14.21
TBC1D1	0	genome.wustl.edu	37	4	37904015	37904015	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	4	37904015	37904015	G	A	SNP	TBC1D1	ENST00000261439	human	ensembl	74_37	+1	known	missense	c.299	p.R100H	0.163	smart_PTB/PI_dom	pfam_Rab-GTPase-TBC_dom,pfam_DUF3350,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,smart_Rab-GTPase-TBC_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D1	HGNC	ENSG00000065882	tier1	-	-	37	0	0.00	77	60	43.80
EXOSC2	0	genome.wustl.edu	37	9	133573185	133573186	+	RNA	INS	-	-	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	9	133573185	133573186	-	T	INS	EXOSC2	ENST00000430138	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	EXOSC2	HGNC	ENSG00000130713	tier1			10	0	0.00	24	6	20.00
ZNF251	0	genome.wustl.edu	37	8	145947028	145947029	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	8	145947028	145947029	AT	-	DEL	ZNF251	ENST00000292562	human	ensembl	74_37	-1	known	frame_shift_del	c.2017_2016	p.*672fs	0.001:0.013	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF251	HGNC	ENSG00000198169	tier1			26	0	0.00	50	10	16.67
GPR126	0	genome.wustl.edu	37	6	142711416	142711416	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	6	142711416	142711416	C	A	SNP	GPR126	ENST00000367609	human	ensembl	74_37	+1	known	missense	c.1244	p.S415Y	0.965	NULL	pfam_GPCR_2_secretin-like,pfam_CUB_dom,pfam_GPS_dom,pfam_Pentaxin,superfamily_CUB_dom,superfamily_ConA-like_lec_gl_sf,smart_CUB_dom,smart_Pentaxin,smart_GPS_dom,pfscan_CUB_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR126	HGNC	ENSG00000112414	tier1	-	-	41	0	0.00	61	19	23.75
IMPG1	0	genome.wustl.edu	37	6	76734971	76734971	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	6	76734971	76734971	C	T	SNP	IMPG1	ENST00000369950	human	ensembl	74_37	-1	known	missense	c.502	p.D168N	1.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_EG-like_dom,pfscan_SEA_dom	-	no_errors	IMPG1	HGNC	ENSG00000112706	tier1	-	-	31	0	0.00	34	8	19.05
TLR3	0	genome.wustl.edu	37	4	186997801	186997801	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	4	186997801	186997801	T	A	SNP	TLR3	ENST00000296795	human	ensembl	74_37	+1	known	missense	c.28	p.F10I	0.003	NULL	pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR3	HGNC	ENSG00000164342	tier1	-	-	42	0	0.00	56	39	41.05
TRIM45	0	genome.wustl.edu	37	1	117663697	117663697	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	1	117663697	117663697	G	A	SNP	TRIM45	ENST00000256649	human	ensembl	74_37	-1	known	missense	c.127	p.P43S	1.000	smart_Znf_RING,pfscan_Znf_RING	pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM45	HGNC	ENSG00000134253	tier1	-	-	28	0	0.00	27	28	50.91
STRIP1	0	genome.wustl.edu	37	1	110580694	110580703	+	RNA	DEL	ATATATATAT	ATATATATAT	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	ATATATATAT	ATATATATAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	1	110580694	110580703	ATATATATAT	-	DEL	STRIP1	ENST00000489059	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001	-	-	-	no_errors	STRIP1	HGNC	ENSG00000143093	tier1			NA	NA	NA	NA	NA	NA
DPPA3P2	0	genome.wustl.edu	37	14	36840727	36840727	+	RNA	SNP	T	T	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	14	36840727	36840727	T	A	SNP	DPPA3P2	ENST00000557188	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	DPPA3P2	HGNC	ENSG00000188831	tier1	-	-	76	0	0.00	134	14	9.46
C19orf45	0	genome.wustl.edu	37	19	7573142	7573142	+	Silent	SNP	A	A	G			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	19	7573142	7573142	A	G	SNP	C19orf45	ENST00000361664	human	ensembl	74_37	+1	known	silent	c.1344	p.S448	0.022	NULL	NULL	-	no_errors	C19orf45	HGNC	ENSG00000198723	tier1	-	-	47	0	0.00	69	41	37.27
LINC00359	0	genome.wustl.edu	37	13	97600392	97600392	+	RNA	DEL	C	C	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	13	97600392	97600392	C	-	DEL	LINC00359	ENST00000442322	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	LINC00359	HGNC	ENSG00000243300	tier1			49	0	0.00	68	29	29.90
DLGAP1	0	genome.wustl.edu	37	18	3814090	3814090	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	18	3814090	3814090	G	C	SNP	DLGAP1	ENST00000315677	human	ensembl	74_37	-1	known	missense	c.1141	p.Q381E	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP1	HGNC	ENSG00000170579	tier1	-	-	32	0	0.00	25	25	50.00
SCN9A	0	genome.wustl.edu	37	2	167144952	167144952	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	2	167144952	167144952	C	G	SNP	SCN9A	ENST00000303354	human	ensembl	74_37	-1	known	missense	c.1312	p.A438P	1.000	NULL	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	tier1	-	-	62	0	0.00	99	69	41.07
ENSG00000273433	0	genome.wustl.edu	37	7	27192088	27192089	+	RNA	INS	-	-	GGCCT			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	7	27192088	27192089	-	GGCCT	INS	ENSG00000273433	ENST00000467897	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007:0.074	-	-	-	no_errors	RP1-170O19.22	Clone_based_vega_gene	ENSG00000273433	tier1			NA	NA	NA	NA	NA	NA
C9orf171	0	genome.wustl.edu	37	9	135374153	135374153	+	Silent	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	9	135374153	135374153	C	T	SNP	C9orf171	ENST00000343036	human	ensembl	74_37	+1	known	silent	c.375	p.I125	0.624	NULL	NULL	-	no_errors	C9orf171	HGNC	ENSG00000188523	tier1	-	-	56	0	0.00	94	10	9.62
DNM1P47	0	genome.wustl.edu	37	15	102299838	102299838	+	RNA	SNP	G	G	C			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	15	102299838	102299838	G	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.965	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	19	0	0.00	28	6	17.65
MAGI1	0	genome.wustl.edu	37	3	65425575	65425576	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	3	65425575	65425576	-	T	INS	MAGI1	ENST00000402939	human	ensembl	74_37	-1	known	frame_shift_ins	c.1249_1248	p.Q416fs	0.437:0.220	NULL	pfam_PDZ,pfam_WW_dom,pfam_GK/Ca_channel_bsu,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_WW_dom,smart_PDZ,smart_GK/Ca_channel_bsu,smart_WW_dom,pfscan_PDZ,pfscan_WW_dom,pfscan_Guanylate_kin-like	-	no_errors	MAGI1	HGNC	ENSG00000151276	tier1			61	0	0.00	108	12	10.00
HMGN5	0	genome.wustl.edu	37	X	80377175	80377176	+	RNA	INS	-	-	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	X	80377175	80377176	-	A	INS	HMGN5	ENST00000491275	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	HMGN5	HGNC	ENSG00000198157	tier1			15	0	0.00	37	5	11.90
ENSG00000221684	0	genome.wustl.edu	37	X	70979225	70979246	+	RNA	DEL	CGCGTGCACATGTGCGCGCGCG	CGCGTGCACATGTGCGCGCGCG	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	CGCGTGCACATGTGCGCGCGCG	CGCGTGCACATGTGCGCGCGCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	X	70979225	70979246	CGCGTGCACATGTGCGCGCGCG	-	DEL	ENSG00000221684	ENST00000408757	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.004:0.003:0.004:0.004:0.003:0.005:0.006:0.010:0.014:0.017:0.020:0.023:0.026:0.028:0.030:0.031:0.032:0.033:0.033:0.033:0.033:0.033	-	-	-	no_errors	BX276092.1	Clone_based_ensembl_gene	ENSG00000221684	tier1			NA	NA	NA	NA	NA	NA
DDX27	0	genome.wustl.edu	37	20	47860570	47860575	+	RNA	DEL	TATGAC	TATGAC	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	TATGAC	TATGAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	20	47860570	47860575	TATGAC	-	DEL	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.001:0.000	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228	tier1			NA	NA	NA	NA	NA	NA
SAMD9	0	genome.wustl.edu	37	7	92731334	92731334	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	7	92731334	92731334	T	C	SNP	SAMD9	ENST00000379958	human	ensembl	74_37	-1	known	missense	c.4077	p.I1359M	0.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,superfamily_P-loop_NTPase,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	tier1	-	-	45	0	0.00	101	10	9.01
ODF1	0	genome.wustl.edu	37	8	103573033	103573042	+	Frame_Shift_Del	DEL	ACCCGTGCAG	ACCCGTGCAG	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	ACCCGTGCAG	ACCCGTGCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	8	103573033	103573042	ACCCGTGCAG	-	DEL	ODF1	ENST00000285402	human	ensembl	74_37	+1	known	frame_shift_del	c.674_683	p.N225fs	0.000:0.002:0.891:0.887:0.486:0.552:0.533:0.179:0.136:0.033	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom	-	no_errors	ODF1	HGNC	ENSG00000155087	tier1			NA	NA	NA	NA	NA	NA
LIME1	0	genome.wustl.edu	37	20	62369426	62369427	+	RNA	INS	-	-	GGGGCG			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	20	62369426	62369427	-	GGGGCG	INS	LIME1	ENST00000465591	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	LIME1	HGNC	ENSG00000203896	tier1			NA	NA	NA	NA	NA	NA
INCENP	0	genome.wustl.edu	37	11	61914294	61914294	+	Silent	SNP	G	G	C			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	11	61914294	61914294	G	C	SNP	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	silent	c.2124	p.R708	0.000	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503	tier1	-	-	30	0	0.00	63	8	11.27
CNTNAP3	0	genome.wustl.edu	37	9	39174372	39174372	+	RNA	SNP	T	T	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	9	39174372	39174372	T	A	SNP	CNTNAP3	ENST00000377653	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.776	-	-	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	tier1	rs200822754	-	50	0	0.00	98	9	8.33
ENSG00000259648	0	genome.wustl.edu	37	14	68082933	68082934	+	RNA	INS	-	-	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	14	68082933	68082934	-	T	INS	ENSG00000259648	ENST00000559968	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.998:0.999	-	-	-	no_errors	RP11-643G16.4	Clone_based_vega_gene	ENSG00000259648	tier1			8	0	0.00	18	3	14.29
ENSG00000254553	0	genome.wustl.edu	37	1	32936253	32936253	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	1	32936253	32936253	C	A	SNP	ENSG00000254553	ENST00000480336	human	ensembl	74_37	+1	known	missense	c.28	p.L10I	1.000	superfamily_BTB/POZ_fold	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	RP1-27O5.3	Clone_based_vega_gene	ENSG00000254553	tier1	-	-	47	0	0.00	19	46	70.77
PKDREJ	0	genome.wustl.edu	37	22	46655314	46655314	+	Silent	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	22	46655314	46655314	G	A	SNP	PKDREJ	ENST00000253255	human	ensembl	74_37	-1	known	silent	c.3906	p.N1302	0.003	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_PLAT/LH2_dom,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,pfscan_REJ-like,prints_PKD_2	-	no_errors	PKDREJ	HGNC	ENSG00000130943	tier1	rs150338973	-	41	0	0.00	111	20	15.27
CDHR4	0	genome.wustl.edu	37	3	49830600	49830600	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	3	49830600	49830600	C	T	SNP	CDHR4	ENST00000412678	human	ensembl	74_37	-1	known	missense	c.1768	p.V590M	0.789	superfamily_Cadherin-like	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDHR4	HGNC	ENSG00000187492	tier1	-	-	60	0	0.00	96	17	14.91
RELN	0	genome.wustl.edu	37	7	103629803	103629804	+	In_Frame_Ins	INS	-	-	GCCGCC			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	7	103629803	103629804	-	GCCGCC	INS	RELN	ENST00000424685	human	ensembl	74_37	-1	known	in_frame_ins	c.1_2	p.0in_frame_insGG	1.000:1.000	NULL	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	tier1			NA	NA	NA	NA	NA	NA
C6	0	genome.wustl.edu	37	5	41186449	41186450	+	RNA	INS	-	-	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	5	41186449	41186450	-	T	INS	C6	ENST00000475349	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	C6	HGNC	ENSG00000039537	tier1			10	0	0.00	10	5	33.33
PRDM16	0	genome.wustl.edu	37	1	3322205	3322206	+	Frame_Shift_Ins	INS	-	-	TG			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	1	3322205	3322206	-	TG	INS	PRDM16	ENST00000270722	human	ensembl	74_37	+1	known	frame_shift_ins	c.1179_1180	p.F393fs	0.994:1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Znf_BED_prd,smart_SET_dom,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM16	HGNC	ENSG00000142611	tier1			26	0	0.00	10	17	62.96
IFT122	0	genome.wustl.edu	37	3	129226538	129226538	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	3	129226538	129226538	G	T	SNP	IFT122	ENST00000296266	human	ensembl	74_37	+1	known	missense	c.2972	p.G991V	0.031	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	tier1	-	-	46	0	0.00	55	7	11.29
ITPKB	0	genome.wustl.edu	37	1	226924876	226924884	+	In_Frame_Del	DEL	CTGCCGCTG	CTGCCGCTG	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	CTGCCGCTG	CTGCCGCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	1	226924876	226924884	CTGCCGCTG	-	DEL	ITPKB	ENST00000272117	human	ensembl	74_37	-1	known	in_frame_del	c.284_276	p.GSS94in_frame_del	0.902:0.650:0.630:0.440:0.081:0.083:0.088:0.089:0.091	NULL	pfam_IPK	-	no_errors	ITPKB	HGNC	ENSG00000143772	tier1			NA	NA	NA	NA	NA	NA
SORCS1	0	genome.wustl.edu	37	10	108924057	108924057	+	Silent	SNP	G	G	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	10	108924057	108924057	G	T	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	silent	c.228	p.P76	0.799	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	tier1	-	-	14	0	0.00	15	5	25.00
ARMCX4	0	genome.wustl.edu	37	X	100749005	100749005	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	X	100749005	100749005	A	G	SNP	ARMCX4	ENST00000423738	human	ensembl	74_37	+1	putative	missense	c.5429	p.E1810G	0.205	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,pfscan_Armadillo	-	no_errors	ARMCX4	HGNC	ENSG00000196440	tier1	rs28649401	-	64	0	0.00	220	27	10.93
SURF6	0	genome.wustl.edu	37	9	136198995	136199015	+	In_Frame_Del	DEL	CCTCCAGCTCCTGCGCCTTCC	CCTCCAGCTCCTGCGCCTTCC	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	CCTCCAGCTCCTGCGCCTTCC	CCTCCAGCTCCTGCGCCTTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	9	136198995	136199015	CCTCCAGCTCCTGCGCCTTCC	-	DEL	SURF6	ENST00000372022	human	ensembl	74_37	-1	known	in_frame_del	c.796_776	p.GKAQELE259in_frame_del	0.341:0.858:0.996:0.998:0.989:0.996:0.996:0.998:0.999:0.997:0.926:0.236:0.248:0.246:0.979:0.994:0.929:0.700:0.233:0.002:0.003	pfam_Surf6	pfam_Surf6	-	no_errors	SURF6	HGNC	ENSG00000148296	tier1			NA	NA	NA	NA	NA	NA
BAG4	0	genome.wustl.edu	37	8	38067571	38067571	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	8	38067571	38067571	C	A	SNP	BAG4	ENST00000287322	human	ensembl	74_37	+1	known	missense	c.934	p.H312N	1.000	NULL	pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain	-	no_errors	BAG4	HGNC	ENSG00000156735	tier1	-	-	39	0	0.00	47	30	38.96
KRTAP5-5	0	genome.wustl.edu	37	11	1651191	1651199	+	In_Frame_Del	DEL	GGCTGTGGA	GGCTGTGGA	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	GGCTGTGGA	GGCTGTGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	11	1651191	1651199	GGCTGTGGA	-	DEL	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	in_frame_del	c.121_129	p.GCG44in_frame_del	0.036:0.152:0.136:0.093:0.018:0.001:0.874:0.883:0.301	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940	tier1			NA	NA	NA	NA	NA	NA
CLLU1	0	genome.wustl.edu	37	12	92819403	92819404	+	RNA	INS	-	-	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	12	92819403	92819404	-	T	INS	CLLU1	ENST00000472839	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012:0.009	-	-	-	no_errors	CLLU1	HGNC	ENSG00000257127	tier1			12	0	0.00	26	8	23.53
WISP2	0	genome.wustl.edu	37	20	43343900	43343905	+	RNA	DEL	GTGAGC	GTGAGC	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	GTGAGC	GTGAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	20	43343900	43343905	GTGAGC	-	DEL	WISP2	ENST00000497421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.008:0.006:0.005:0.000:0.000:0.000	-	-	-	no_errors	WISP2	HGNC	ENSG00000064205	tier1			NA	NA	NA	NA	NA	NA
PIGQ	0	genome.wustl.edu	37	16	624230	624230	+	Silent	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	16	624230	624230	G	A	SNP	PIGQ	ENST00000026218	human	ensembl	74_37	+1	known	silent	c.156	p.V52	0.998	NULL	pfam_GlcNAc_Gpi1	-	no_errors	PIGQ	HGNC	ENSG00000007541	tier1	-	-	52	0	0.00	26	33	55.00
SORCS1	0	genome.wustl.edu	37	10	108458981	108458981	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	10	108458981	108458981	G	C	SNP	SORCS1	ENST00000344440	human	ensembl	74_37	-1	known	missense	c.1404	p.D468E	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS1	HGNC	ENSG00000108018	tier1	-	-	41	0	0.00	46	4	8.00
DZANK1	0	genome.wustl.edu	37	20	18446050	18446051	+	RNA	INS	-	-	TGTGCACTTATAGC			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	20	18446050	18446051	-	TGTGCACTTATAGC	INS	DZANK1	ENST00000460891	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.050:0.000	-	-	-	no_errors	DZANK1	HGNC	ENSG00000089091	tier1			NA	NA	NA	NA	NA	NA
AHNAK	0	genome.wustl.edu	37	11	62298096	62298096	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	11	62298096	62298096	G	A	SNP	AHNAK	ENST00000378024	human	ensembl	74_37	-1	known	missense	c.3793	p.P1265S	1.000	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK	HGNC	ENSG00000124942	tier1	-	-	203	0	0.00	300	47	13.51
FBXO2	0	genome.wustl.edu	37	1	11710779	11710780	+	In_Frame_Ins	INS	-	-	GCG			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	1	11710779	11710780	-	GCG	INS	FBXO2	ENST00000354287	human	ensembl	74_37	-1	known	in_frame_ins	c.135_134	p.46in_frame_insA	0.915:0.821	superfamily_F-box_dom,pfscan_F-box_dom	pfam_F-box-assoc_dom,pfam_F-box_dom,superfamily_Galactose-bd-like,superfamily_F-box_dom,pfscan_F-box_dom,pfscan_F-box-assoc_dom	-	no_errors	FBXO2	HGNC	ENSG00000116661	tier1			9	0	0.00	11	6	35.29
GPR112	0	genome.wustl.edu	37	X	135431967	135431967	+	Silent	SNP	A	A	G			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	X	135431967	135431967	A	G	SNP	GPR112	ENST00000370652	human	ensembl	74_37	+1	known	silent	c.6102	p.T2034	0.000	NULL	pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR112	HGNC	ENSG00000156920	tier1	-	-	30	0	0.00	90	14	13.46
PCDHGA2	0	genome.wustl.edu	37	5	140720410	140720410	+	Silent	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	5	140720410	140720410	C	T	SNP	PCDHGA2	ENST00000394576	human	ensembl	74_37	+1	known	silent	c.1872	p.G624	0.045	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA2	HGNC	ENSG00000081853	tier1	-	-	201	0	0.00	280	42	13.00
LOC100287042	0	genome.wustl.edu	37	17	73269841	73269842	+	RNA	INS	-	-	TTATT			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	17	73269841	73269842	-	TTATT	INS	LOC100287042	ENST00000585075	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.004	-	-	-	no_errors	RP11-649A18.12	Clone_based_vega_gene	ENSG00000263843	tier1			NA	NA	NA	NA	NA	NA
PLOD2	0	genome.wustl.edu	37	3	145788914	145788914	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	3	145788914	145788914	T	A	SNP	PLOD2	ENST00000282903	human	ensembl	74_37	-1	known	missense	c.2036	p.E679V	0.991	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	pfam_Oxoglu/Fe-dep_dioxygenase,smart_Pro_4_hyd_alph	-	no_errors	PLOD2	HGNC	ENSG00000152952	tier1	-	-	47	0	0.00	56	35	38.46
NCLN	0	genome.wustl.edu	37	19	3206314	3206314	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	19	3206314	3206314	C	G	SNP	NCLN	ENST00000246117	human	ensembl	74_37	+1	known	missense	c.1390	p.R464G	0.957	pirsf_Nicalin	pfam_Peptidase_M28,pfam_Nicastrin,pirsf_Nicalin	-	no_errors	NCLN	HGNC	ENSG00000125912	tier1	-	-	14	0	0.00	15	9	37.50
TSPAN32	0	genome.wustl.edu	37	11	2334970	2334970	+	Silent	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	11	2334970	2334970	G	A	SNP	TSPAN32	ENST00000182290	human	ensembl	74_37	+1	known	silent	c.441	p.A147	0.036	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	-	no_errors	TSPAN32	HGNC	ENSG00000064201	tier1	-	-	135	0	0.00	111	15	11.90
KIAA0196	0	genome.wustl.edu	37	8	126056836	126056837	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	8	126056836	126056837	-	T	INS	KIAA0196	ENST00000318410	human	ensembl	74_37	-1	known	frame_shift_ins	c.2609_2608	p.T870fs	1.000:1.000	pfam_WASH_strumpellin	pfam_WASH_strumpellin,superfamily_Ig_E-set	-	no_errors	KIAA0196	HGNC	ENSG00000164961	tier1			82	0	0.00	123	26	17.45
LHFPL4	0	genome.wustl.edu	37	3	9547832	9547832	+	Silent	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	3	9547832	9547832	G	A	SNP	LHFPL4	ENST00000287585	human	ensembl	74_37	-1	known	silent	c.462	p.T154	0.894	pfam_Lipome_HGMIC_fus_partner-like	pfam_Lipome_HGMIC_fus_partner-like	-	no_errors	LHFPL4	HGNC	ENSG00000156959	tier1	-	-	61	0	0.00	63	52	45.22
CD3EAP	0	genome.wustl.edu	37	19	45912507	45912507	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	19	45912507	45912507	G	-	DEL	CD3EAP	ENST00000589804	human	ensembl	74_37	+1	known	frame_shift_del	c.1287	p.E431fs	0.883	NULL	pfam_DNA-dir_RNA_pol1_su_RPA34	-	no_errors	CD3EAP	HGNC	ENSG00000117877	tier1			23	0	0.00	19	2	9.52
LRRIQ3	0	genome.wustl.edu	37	1	74540359	74540359	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	1	74540359	74540359	T	C	SNP	LRRIQ3	ENST00000354431	human	ensembl	74_37	-1	known	missense	c.983	p.H328R	0.155	NULL	pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ3	HGNC	ENSG00000162620	tier1	-	-	46	0	0.00	58	37	38.95
TSPYL2	0	genome.wustl.edu	37	X	53115089	53115109	+	In_Frame_Del	DEL	TGACAACAATGAGAGTGCAGA	TGACAACAATGAGAGTGCAGA	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	TGACAACAATGAGAGTGCAGA	TGACAACAATGAGAGTGCAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	X	53115089	53115109	TGACAACAATGAGAGTGCAGA	-	DEL	TSPYL2	ENST00000375442	human	ensembl	74_37	+1	known	in_frame_del	c.1515_1535	p.ESADDNN509in_frame_del	0.026:0.024:0.015:0.010:0.008:0.008:0.005:0.003:0.001:0.000:0.001:0.001:0.001:0.002:0.001:0.000:0.000:0.001:0.000:0.000:0.025	NULL	pfam_NAP_family	-	no_errors	TSPYL2	HGNC	ENSG00000184205	tier1			NA	NA	NA	NA	NA	NA
FST	0	genome.wustl.edu	37	5	52781023	52781023	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	5	52781023	52781023	G	-	DEL	FST	ENST00000256759	human	ensembl	74_37	+1	known	frame_shift_del	c.918	p.L307fs	1.000	pfam_Kazal_dom,smart_Kazal_dom	pfam_Kazal_dom,pfam_Follistatin/Osteonectin_EGF,superfamily_TB_dom,smart_Fol_N,smart_Kazal_dom	-	no_errors	FST	HGNC	ENSG00000134363	tier1			27	0	0.00	54	39	41.94
ZNF236	0	genome.wustl.edu	37	18	74583683	74583683	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	18	74583683	74583683	G	A	SNP	ZNF236	ENST00000253159	human	ensembl	74_37	+1	known	missense	c.563	p.R188Q	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF236	HGNC	ENSG00000130856	tier1	-	-	51	0	0.00	37	28	43.08
DNAJC5B	0	genome.wustl.edu	37	8	67012211	67012211	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	8	67012211	67012211	A	G	SNP	DNAJC5B	ENST00000276570	human	ensembl	74_37	+1	known	missense	c.545	p.N182S	1.000	NULL	pfam_DnaJ_domain,superfamily_DnaJ_domain,smart_DnaJ_domain,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC5B	HGNC	ENSG00000147570	tier1	-	-	121	0	0.00	146	115	44.06
SLC22A8	0	genome.wustl.edu	37	11	62762013	62762013	+	Splice_Site	SNP	C	C	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	11	62762013	62762013	C	A	SNP	SLC22A8	ENST00000336232	human	ensembl	74_37	-1	known	splice_site	c.1216+1	e7+1	1.000	-	-	-	no_errors	SLC22A8	HGNC	ENSG00000149452	tier1	-	-	25	0	0.00	27	6	18.18
FAM230C	0	genome.wustl.edu	37	22	21663672	21663672	+	RNA	SNP	T	T	C			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	22	21663672	21663672	T	C	SNP	FAM230C	ENST00000436681	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.827	-	-	-	no_errors	KB-1183D5.13	Clone_based_vega_gene	ENSG00000206142	tier1	-	-	80	0	0.00	320	38	10.61
RPL23AP7	0	genome.wustl.edu	37	2	114369629	114369629	+	RNA	SNP	G	G	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	2	114369629	114369629	G	T	SNP	RPL23AP7	ENST00000391616	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RPL23AP7	HGNC	ENSG00000240356	tier1	rs112337169	-	28	0	0.00	44	14	24.14
SMOC1	0	genome.wustl.edu	37	14	70490038	70490038	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	14	70490038	70490038	C	T	SNP	SMOC1	ENST00000361956	human	ensembl	74_37	+1	known	missense	c.1165	p.R389C	1.000	pfam_SPARC/Testican_Ca-bd-dom	pfam_Thyroglobulin_1,pfam_SPARC/Testican_Ca-bd-dom,pfam_Kazal_dom,superfamily_Thyroglobulin_1,smart_Kazal_dom,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1	-	no_errors	SMOC1	HGNC	ENSG00000198732	tier1	-	-	28	0	0.00	30	21	41.18
EHD1	0	genome.wustl.edu	37	11	64621782	64621782	+	RNA	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	11	64621782	64621782	G	A	SNP	EHD1	ENST00000488711	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	EHD1	HGNC	ENSG00000110047	tier1	-	-	69	0	0.00	78	53	40.46
FAT3	0	genome.wustl.edu	37	11	92531873	92531873	+	Silent	SNP	T	T	G			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	11	92531873	92531873	T	G	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	silent	c.5694	p.V1898	0.248	superfamily_Cadherin-like	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	tier1	-	-	40	0	0.00	48	29	37.66
TNS1	0	genome.wustl.edu	37	2	218723259	218723259	+	RNA	SNP	G	G	A			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	2	218723259	218723259	G	A	SNP	TNS1	ENST00000480665	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TNS1	HGNC	ENSG00000079308	tier1	-	-	34	0	0.00	59	32	35.16
MGAM	0	genome.wustl.edu	37	7	141780612	141780612	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	7	141780612	141780612	C	T	SNP	MGAM	ENST00000475668	human	ensembl	74_37	+1	putative	missense	c.5869	p.R1957W	0.350	superfamily_Gal_mutarotase_SF_dom	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,smart_P_trefoil	-	no_errors	MGAM	HGNC	ENSG00000257335	tier1	-	-	37	0	0.00	46	4	8.00
CA12	0	genome.wustl.edu	37	15	63618489	63618489	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	15	63618489	63618489	C	G	SNP	CA12	ENST00000178638	human	ensembl	74_37	-1	known	missense	c.1060	p.A354P	0.506	NULL	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA12	HGNC	ENSG00000074410	tier1	-	-	74	0	0.00	81	87	51.79
CARS2	0	genome.wustl.edu	37	13	111357899	111357899	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	13	111357899	111357899	C	G	SNP	CARS2	ENST00000257347	human	ensembl	74_37	-1	known	missense	c.244	p.V82L	0.998	pfam_Cys-tRNA/MSH_ligase,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_aa-tRNA-synth_Ia,superfamily_tRNAsynth_1a_anticodon-bd,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS2	HGNC	ENSG00000134905	tier1	-	-	29	0	0.00	33	20	37.74
SLC12A3	0	genome.wustl.edu	37	16	56901059	56901059	+	Silent	SNP	C	C	T			TCGA-DX-A48P-01A-11D-A307-09	TCGA-DX-A48P-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	3a574115-0820-47a8-a5fc-3cce465c23c3	6b704732-d99f-45ab-8e4b-ba2b8912031e	16	56901059	56901059	C	T	SNP	SLC12A3	ENST00000438926	human	ensembl	74_37	+1	known	silent	c.360	p.G120	0.157	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_AA_permease_N,prints_NaCl_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A3	HGNC	ENSG00000070915	tier1	-	-	55	0	0.00	40	4	9.09
