Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
GAD2	0	genome.wustl.edu	37	10	26505740	26505740	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	10	26505740	26505740	T	C	SNP	GAD2	ENST00000259271	human	ensembl	74_37	+1	known	missense	c.2	p.M1T	1.000	NULL	pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase	-	no_errors	GAD2	HGNC	ENSG00000136750	tier1	-	-	33	0	0.00	27	17	38.64
IQGAP1	0	genome.wustl.edu	37	15	91018048	91018049	+	RNA	INS	-	-	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	15	91018048	91018049	-	T	INS	IQGAP1	ENST00000560020	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.121	-	-	-	no_errors	IQGAP1	HGNC	ENSG00000140575	tier1			16	0	0.00	17	4	19.05
SPEF2	0	genome.wustl.edu	37	5	35789750	35789750	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	5	35789750	35789750	G	T	SNP	SPEF2	ENST00000303129	human	ensembl	74_37	+1	known	missense	c.472	p.V158L	1.000	NULL	pfam_HATC_dom_C,superfamily_RNaseH-like_dom	-	no_errors	SPEF2	HGNC	ENSG00000152582	tier1	-	-	47	0	0.00	41	34	45.33
CAPZA1	0	genome.wustl.edu	37	1	113202197	113202202	+	RNA	DEL	TCTCTC	TCTCTC	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	TCTCTC	TCTCTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	1	113202197	113202202	TCTCTC	-	DEL	CAPZA1	ENST00000466066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.008:0.000:0.000:0.000:0.000	-	-	-	no_errors	CAPZA1	HGNC	ENSG00000116489	tier1			NA	NA	NA	NA	NA	NA
ZNF628	0	genome.wustl.edu	37	19	55993959	55993959	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	19	55993959	55993959	T	C	SNP	ZNF628	ENST00000598519	human	ensembl	74_37	+1	known	missense	c.1399	p.S467P	0.954	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF628	HGNC	ENSG00000197483	tier1	-	-	54	0	0.00	4	21	84.00
RBAK	0	genome.wustl.edu	37	7	5104323	5104323	+	Silent	SNP	A	A	G			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	7	5104323	5104323	A	G	SNP	RBAK	ENST00000353796	human	ensembl	74_37	+1	known	silent	c.1236	p.R412	0.009	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	RBAK	HGNC	ENSG00000146587	tier1	-	-	37	0	0.00	24	16	40.00
HLA-DRB6	0	genome.wustl.edu	37	6	32522507	32522526	+	RNA	DEL	CACTTGGCAGGTGTAAACCT	CACTTGGCAGGTGTAAACCT	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	CACTTGGCAGGTGTAAACCT	CACTTGGCAGGTGTAAACCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	6	32522507	32522526	CACTTGGCAGGTGTAAACCT	-	DEL	HLA-DRB6	ENST00000411500	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000:0.995:0.983:0.993:1.000:1.000:1.000:1.000:0.998:0.995:0.995:0.994:0.998:1.000:0.999:1.000:1.000:1.000:1.000	-	-	-	no_errors	HLA-DRB6	HGNC	ENSG00000229391	tier1			NA	NA	NA	NA	NA	NA
KHK	0	genome.wustl.edu	37	2	27322146	27322146	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	2	27322146	27322146	G	C	SNP	KHK	ENST00000260598	human	ensembl	74_37	+1	known	missense	c.647	p.R216T	1.000	pfam_PfkB_dom	pfam_PfkB_dom	-	no_errors	KHK	HGNC	ENSG00000138030	tier1	-	-	104	0	0.00	111	24	17.78
WNK1	0	genome.wustl.edu	37	12	970296	970297	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	12	970296	970297	-	A	INS	WNK1	ENST00000530271	human	ensembl	74_37	+1	known	frame_shift_ins	c.1738_1739	p.K584fs	1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK1	HGNC	ENSG00000060237	tier1			49	0	0.00	71	8	10.13
GART	0	genome.wustl.edu	37	21	34883664	34883664	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	21	34883664	34883664	C	T	SNP	GART	ENST00000381815	human	ensembl	74_37	-1	known	missense	c.2209	p.A737T	1.000	pfam_AIR_synth_C_dom,superfamily_AIR_synth_C_dom,tigrfam_PurM_cligase	pfam_PRibGlycinamid_synth_ATP-grasp,pfam_Formyl_transf_N,pfam_PRibGlycinamide_synth_N,pfam_AIR_synth_C_dom,pfam_PRibGlycinamide_synth_C-dom,pfam_AIR_synth_N_dom,pfam_ATP-grasp_carboxylate-amine,pfam_CbamoylP_synth_lsu-like_ATP-bd,superfamily_Formyl_transf_N,superfamily_AIR_synth_C_dom,superfamily_PurM_N-like,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,pfscan_ATP-grasp,tigrfam_PRibGlycinamide_synth,tigrfam_PurM_cligase,tigrfam_PurN_trans	-	no_errors	GART	HGNC	ENSG00000159131	tier1	-	-	107	0	0.00	66	81	54.73
C4orf3	0	genome.wustl.edu	37	4	120221759	120221759	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	4	120221759	120221759	C	G	SNP	C4orf3	ENST00000399075	human	ensembl	74_37	-1	known	missense	c.331	p.A111P	0.000	NULL	NULL	-	no_errors	C4orf3	HGNC	ENSG00000164096	tier1	-	-	39	0	0.00	43	30	41.10
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	17	7578406	7578406	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.524	p.R175L	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	43	0	0.00	6	42	87.50
PIEZO2	0	genome.wustl.edu	37	18	10773615	10773615	+	Silent	SNP	C	C	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	18	10773615	10773615	C	T	SNP	PIEZO2	ENST00000582913	human	ensembl	74_37	-1	known	silent	c.2547	p.P849	0.681	NULL	NULL	-	no_errors	PIEZO2	HGNC	ENSG00000154864	tier1	-	-	36	0	0.00	17	15	46.88
NRXN1	0	genome.wustl.edu	37	2	50147836	50147843	+	RNA	DEL	GTGTGTGT	GTGTGTGT	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	GTGTGTGT	GTGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	2	50147836	50147843	GTGTGTGT	-	DEL	NRXN1	ENST00000484192	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001:0.005:0.106:0.113:0.127:0.107:0.109	-	-	-	no_errors	NRXN1	HGNC	ENSG00000179915	tier1			NA	NA	NA	NA	NA	NA
PDE9A	0	genome.wustl.edu	37	21	44195538	44195538	+	RNA	DEL	A	A	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	21	44195538	44195538	A	-	DEL	PDE9A	ENST00000460989	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE9A	HGNC	ENSG00000160191	tier1			20	0	0.00	25	5	16.67
PTPRS	0	genome.wustl.edu	37	19	5212070	5212070	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	19	5212070	5212070	G	-	DEL	PTPRS	ENST00000372412	human	ensembl	74_37	-1	known	frame_shift_del	c.4964	p.T1655fs	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom	-	no_errors	PTPRS	HGNC	ENSG00000105426	tier1			53	0	0.00	61	39	39.00
VPS45	0	genome.wustl.edu	37	1	150082514	150082514	+	RNA	DEL	A	A	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	1	150082514	150082514	A	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.965	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631	tier1			42	0	0.00	49	5	9.26
CNTNAP3	0	genome.wustl.edu	37	9	39178156	39178156	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	9	39178156	39178156	G	C	SNP	CNTNAP3	ENST00000297668	human	ensembl	74_37	-1	known	nonsense	c.740	p.S247*	0.967	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3	HGNC	ENSG00000106714	tier1	-	-	151	0	0.00	134	117	46.61
ICA1	0	genome.wustl.edu	37	7	8196567	8196585	+	Frame_Shift_Del	DEL	AAAAAAAAAAAAAAAAAAG	AAAAAAAAAAAAAAAAAAG	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	AAAAAAAAAAAAAAAAAAG	AAAAAAAAAAAAAAAAAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	7	8196567	8196585	AAAAAAAAAAAAAAAAAAG	-	DEL	ICA1	ENST00000407906	human	ensembl	74_37	-1	putative	frame_shift_del	c.983_965	p.S322fs	0.008:0.013:0.018:0.022:0.026:0.029:0.033:0.021:0.016:0.011:0.005:0.002:0.000:0.000:0.000:0.001:0.001:0.001:0.001	NULL	pfam_AH_dom,pfscan_AH_dom	-	no_errors	ICA1	HGNC	ENSG00000003147	tier1			NA	NA	NA	NA	NA	NA
MSH3	0	genome.wustl.edu	37	5	79950700	79950717	+	In_Frame_Del	DEL	GCAGCGGCTGCAGCGGCC	GCAGCGGCTGCAGCGGCC	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	GCAGCGGCTGCAGCGGCC	GCAGCGGCTGCAGCGGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	5	79950700	79950717	GCAGCGGCTGCAGCGGCC	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	in_frame_del	c.154_171	p.AAAAAA55in_frame_del	0.640:0.607:0.574:0.541:0.508:0.474:0.440:0.406:0.372:0.338:0.304:0.271:0.238:0.205:0.172:0.140:0.107:0.075	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1			NA	NA	NA	NA	NA	NA
VPS13B	0	genome.wustl.edu	37	8	100880651	100880651	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	8	100880651	100880651	C	G	SNP	VPS13B	ENST00000358544	human	ensembl	74_37	+1	known	missense	c.11425	p.P3809A	1.000	pfam_Autophagy-rel_C	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	tier1	-	-	76	0	0.00	76	56	42.42
MED15P1	0	genome.wustl.edu	37	14	19499970	19499970	+	RNA	SNP	G	G	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	14	19499970	19499970	G	T	SNP	MED15P1	ENST00000552968	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MED15P1	HGNC	ENSG00000257853	tier1	-	-	27	0	0.00	34	6	15.00
MTHFD1L	0	genome.wustl.edu	37	6	151206811	151206811	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	6	151206811	151206811	C	G	SNP	MTHFD1L	ENST00000367321	human	ensembl	74_37	+1	known	missense	c.584	p.A195G	1.000	pfam_THF_DH/CycHdrlase_NAD-bd_dom	pfam_Formate_THF_ligase,pfam_THF_DH/CycHdrlase_NAD-bd_dom,pfam_THF_DH/CycHdrlase_cat_dom,superfamily_P-loop_NTPase,prints_THF_DH/CycHdrlase	-	no_errors	MTHFD1L	HGNC	ENSG00000120254	tier1	-	-	81	0	0.00	72	64	46.72
ANKRD28	0	genome.wustl.edu	37	3	15838150	15838151	+	RNA	INS	-	-	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	3	15838150	15838151	-	T	INS	ANKRD28	ENST00000461696	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016:0.428	-	-	-	no_errors	ANKRD28	HGNC	ENSG00000206560	tier1			8	0	0.00	26	6	18.75
UBXN11	0	genome.wustl.edu	37	1	26608812	26608889	+	In_Frame_Del	DEL	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	1	26608812	26608889	CCAGGACAGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGACCGGGACTGGGGCCGGGACCGGGA	-	DEL	UBXN11	ENST00000374221	human	ensembl	74_37	-1	known	in_frame_del	c.1541_1464	p.GPGPSPGPGPGPSPGPGPGPSPCPGP490in_frame_del	0.001:0.001:0.001:0.001:0.001:0.001:0.002:0.002:0.128:0.145:0.146:0.148:0.148:0.149:0.149:0.149:0.149:0.149:0.148:0.141:0.128:0.126:0.131:0.132:0.128:0.134:0.156:0.169:0.174:0.173:0.168:0.156:0.134:0.097:0.084:0.080:0.075:0.071:0.065:0.060:0.054:0.049:0.042:0.024:0.015:0.010:0.006:0.004:0.004:0.008:0.005:0.003:0.002:0.004:0.007:0.010:0.014:0.019:0.018:0.000:0.000:0.000:0.001:0.002:0.005:0.007:0.007:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.025:0.015:0.007:0.001	NULL	pfam_SEP_domain,superfamily_SEP_domain,pfscan_UBX	-	no_errors	UBXN11	HGNC	ENSG00000158062	tier1			NA	NA	NA	NA	NA	NA
DOCK2	0	genome.wustl.edu	37	5	169188536	169188536	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	5	169188536	169188536	G	-	DEL	DOCK2	ENST00000256935	human	ensembl	74_37	+1	known	frame_shift_del	c.2461	p.E821fs	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_SH3_2,superfamily_SH3_domain,superfamily_Cyt_c-like_dom,superfamily_ARM-type_fold,superfamily_Ferritin-like_SF,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK2	HGNC	ENSG00000134516	tier1			54	0	0.00	47	47	50.00
C16orf96	0	genome.wustl.edu	37	16	4625892	4625892	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	16	4625892	4625892	G	T	SNP	C16orf96	ENST00000444310	human	ensembl	74_37	+1	known	nonsense	c.1411	p.E471*	0.004	NULL	NULL	-	no_errors	C16orf96	HGNC	ENSG00000205832	tier1	-	-	61	0	0.00	43	53	55.21
HMGB1P5	0	genome.wustl.edu	37	3	22423916	22423927	+	RNA	DEL	GAAGAAGATGAA	GAAGAAGATGAA	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	GAAGAAGATGAA	GAAGAAGATGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	3	22423916	22423927	GAAGAAGATGAA	-	DEL	HMGB1P5	ENST00000451497	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.989:0.992:0.991:0.998:1.000:0.999:1.000:1.000:0.999:1.000:1.000:1.000	-	-	-	no_errors	HMGB1P5	HGNC	ENSG00000132967	tier1			NA	NA	NA	NA	NA	NA
LOC100506679	0	genome.wustl.edu	37	22	43435575	43435576	+	RNA	INS	-	-	AA			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	22	43435575	43435576	-	AA	INS	LOC100506679	ENST00000443063	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009:0.002	-	-	-	no_errors	AL022476.2	Clone_based_vega_gene	ENSG00000230319	tier1			8	0	0.00	18	3	14.29
VAMP1	0	genome.wustl.edu	37	12	6571921	6571952	+	RNA	DEL	CAAGGAGGAGCCCAGAGGAGAGTGGAGACCTT	CAAGGAGGAGCCCAGAGGAGAGTGGAGACCTT	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	CAAGGAGGAGCCCAGAGGAGAGTGGAGACCTT	CAAGGAGGAGCCCAGAGGAGAGTGGAGACCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	12	6571921	6571952	CAAGGAGGAGCCCAGAGGAGAGTGGAGACCTT	-	DEL	VAMP1	ENST00000544432	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.927:0.937:0.945:0.951:0.966:0.970:0.986:0.986:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:0.996:0.987:0.973:0.994:0.998:0.999:1.000:0.999:1.000:1.000:0.994:0.991:0.959:0.932:0.808	-	-	-	no_errors	VAMP1	HGNC	ENSG00000139190	tier1			NA	NA	NA	NA	NA	NA
SLC7A14	0	genome.wustl.edu	37	3	170216674	170216674	+	Splice_Site	SNP	C	C	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	3	170216674	170216674	C	T	SNP	SLC7A14	ENST00000231706	human	ensembl	74_37	-1	known	splice_site	c.542-1	e3-1	1.000	-	-	-	no_errors	SLC7A14	HGNC	ENSG00000013293	tier1	-	-	46	0	0.00	25	27	51.92
MUC4	0	genome.wustl.edu	37	3	195513615	195513615	+	Silent	SNP	A	A	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	3	195513615	195513615	A	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.4836	p.G1612	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	586	0	0.00	707	150	17.48
ERBB4	0	genome.wustl.edu	37	2	212295769	212295769	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	2	212295769	212295769	A	T	SNP	ERBB4	ENST00000342788	human	ensembl	74_37	-1	known	missense	c.2544	p.N848K	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB4	HGNC	ENSG00000178568	tier1	-	-	70	0	0.00	60	57	48.72
PABPC4	0	genome.wustl.edu	37	1	40041576	40041576	+	Silent	SNP	G	G	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	1	40041576	40041576	G	T	SNP	PABPC4	ENST00000372858	human	ensembl	74_37	-1	known	silent	c.48	p.G16	0.957	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621	tier1	-	-	98	0	0.00	229	35	13.21
MSH3	0	genome.wustl.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	CCCCCAGCT	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	CCCCCAGCT	CCCCCAGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	5	79950742	79950750	CCCCCAGCT	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	in_frame_del	c.196_204	p.PAP67in_frame_del	0.890:0.802:0.715:0.628:0.541:0.455:0.369:0.282:0.196	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1			NA	NA	NA	NA	NA	NA
OLFM3	0	genome.wustl.edu	37	1	102462400	102462400	+	RNA	SNP	C	C	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	1	102462400	102462400	C	T	SNP	OLFM3	ENST00000462354	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.989	-	-	-	no_errors	OLFM3	HGNC	ENSG00000118733	tier1	-	-	165	0	0.00	186	25	11.85
MIR3648	0	genome.wustl.edu	37	21	9825966	9825966	+	RNA	SNP	A	A	C			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	21	9825966	9825966	A	C	SNP	MIR3648	ENST00000581792	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.050	-	-	-	no_errors	MIR3648	HGNC	ENSG00000264462	tier1	rs1796672	-	13	0	0.00	35	16	30.77
KIAA1211	0	genome.wustl.edu	37	4	57180576	57180577	+	In_Frame_Ins	INS	-	-	GGAGCGGAGGGAGCGGAG			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	4	57180576	57180577	-	GGAGCGGAGGGAGCGGAG	INS	KIAA1211	ENST00000504228	human	ensembl	74_37	+1	known	in_frame_ins	c.908_909	p.307in_frame_insERRERR	0.000:0.000	NULL	NULL	-	no_errors	KIAA1211	HGNC	ENSG00000109265	tier1			NA	NA	NA	NA	NA	NA
MDM2	0	genome.wustl.edu	37	12	69222659	69222659	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	12	69222659	69222659	T	C	SNP	MDM2	ENST00000462284	human	ensembl	74_37	+1	known	missense	c.632	p.I211T	0.919	superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4	pfam_SWIB_MDM2_domain,pfam_Znf_RanBP2,superfamily_SWIB_MDM2_domain,pirsf_p53_neg-reg_MDM_2/4,pfscan_Znf_RanBP2,pfscan_Znf_RING	-	no_errors	MDM2	HGNC	ENSG00000135679	tier1	-	-	32	0	0.00	30	26	46.43
ZSCAN21	0	genome.wustl.edu	37	7	99654810	99654810	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	7	99654810	99654810	G	T	SNP	ZSCAN21	ENST00000292450	human	ensembl	74_37	+1	known	nonsense	c.181	p.E61*	1.000	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZSCAN21	HGNC	ENSG00000166529	tier1	-	-	46	0	0.00	50	58	53.70
MSH3	0	genome.wustl.edu	37	5	79950723	79950723	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	5	79950723	79950723	G	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.177	p.A60fs	0.730	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1			17	0	0.00	38	11	22.45
OR51G1	0	genome.wustl.edu	37	11	4945061	4945061	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	11	4945061	4945061	T	C	SNP	OR51G1	ENST00000321961	human	ensembl	74_37	-1	known	missense	c.509	p.Y170C	0.963	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51G1	HGNC	ENSG00000176879	tier1	-	-	60	0	0.00	37	35	48.61
MSH3	0	genome.wustl.edu	37	5	79950714	79950714	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	5	79950714	79950714	G	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	frame_shift_del	c.168	p.A57fs	0.172	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1			25	0	0.00	30	12	28.57
MIR663A	0	genome.wustl.edu	37	20	26231957	26231957	+	RNA	SNP	G	G	A			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	20	26231957	26231957	G	A	SNP	MIR663A	ENST00000594130	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.046	-	-	-	no_errors	MIR663A	HGNC	ENSG00000227195	tier1	-	-	15	0	0.00	18	13	41.94
TDRP	0	genome.wustl.edu	37	8	494659	494664	+	In_Frame_Del	DEL	GGCGGC	GGCGGC	-			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	GGCGGC	GGCGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	8	494659	494664	GGCGGC	-	DEL	TDRP	ENST00000427263	human	ensembl	74_37	-1	known	in_frame_del	c.99_94	p.AA32in_frame_del	0.066:0.068:0.048:0.038:0.021:0.012	NULL	NULL	-	no_errors	TDRP	HGNC	ENSG00000180190	tier1			NA	NA	NA	NA	NA	NA
ANKRD62	0	genome.wustl.edu	37	18	12107409	12107409	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	18	12107409	12107409	A	G	SNP	ANKRD62	ENST00000314074	human	ensembl	74_37	+1	known	missense	c.965	p.K322R	0.000	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD62	HGNC	ENSG00000181626	tier1	-	-	68	0	0.00	93	9	8.82
NPIPB11	0	genome.wustl.edu	37	16	29394193	29394193	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	16	29394193	29394193	G	A	SNP	NPIPB11	ENST00000524087	human	ensembl	74_37	-1	putative	missense	c.2060	p.P687L	0.002	NULL	NULL	-	no_errors	NPIPB11	HGNC	ENSG00000254206	tier1	-	-	27	0	0.00	36	5	12.20
FER	0	genome.wustl.edu	37	5	108207846	108207846	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	5	108207846	108207846	G	C	SNP	FER	ENST00000281092	human	ensembl	74_37	+1	known	missense	c.856	p.E286Q	1.000	pirsf_Tyr_kinase_non-rcpt_Fes_subgr	pirsf_Tyr_kinase_non-rcpt_Fes_subgr,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_FCH_dom,superfamily_Kinase-like_dom,smart_FCH_dom,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,pfscan_FCH_dom,pfscan_SH2,pfscan_Prot_kinase_dom	-	no_errors	FER	HGNC	ENSG00000151422	tier1	-	-	33	0	0.00	36	20	34.48
TPRKB	0	genome.wustl.edu	37	2	73957880	73957881	+	RNA	INS	-	-	A			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	2	73957880	73957881	-	A	INS	TPRKB	ENST00000485758	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.004	-	-	-	no_errors	TPRKB	HGNC	ENSG00000144034	tier1			21	0	0.00	33	4	10.81
SH3BP5L	0	genome.wustl.edu	37	1	249109041	249109041	+	RNA	SNP	A	A	C			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	1	249109041	249109041	A	C	SNP	SH3BP5L	ENST00000475978	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	SH3BP5L	HGNC	ENSG00000175137	tier1	-	-	14	0	0.00	13	10	43.48
METTL2A	0	genome.wustl.edu	37	17	60503814	60503814	+	Silent	SNP	C	C	T			TCGA-DX-A48U-01A-11D-A307-09	TCGA-DX-A48U-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	acb75bde-21d7-4529-94e5-8c3d57b82a4d	5e3d2dc3-73c1-4ef0-b649-0be72a5ab634	17	60503814	60503814	C	T	SNP	METTL2A	ENST00000311506	human	ensembl	74_37	+1	known	silent	c.357	p.N119	0.000	pirsf_MeTrfase	pfam_Methyltransf_12,pfam_Methyltransf_11,pfam_UbiE/COQ5_MeTrFase,pirsf_MeTrfase	-	no_errors	METTL2A	HGNC	ENSG00000087995	tier1	-	-	126	0	0.00	86	90	51.14
