Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CDH7	0	genome.wustl.edu	37	18	63547710	63547710	+	Silent	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	18	63547710	63547710	C	T	SNP	CDH7	ENST00000323011	human	ensembl	74_37	+1	known	silent	c.1938	p.I646	0.998	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH7	HGNC	ENSG00000081138	tier1	-	-	86	0	0.00	99	11	10.00
ENSG00000232274	0	genome.wustl.edu	37	1	143210392	143210396	+	RNA	DEL	ATAAC	ATAAC	-			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	ATAAC	ATAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	143210392	143210396	ATAAC	-	DEL	ENSG00000232274	ENST00000412204	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.841:0.809:0.673:0.586:0.231	-	-	-	no_errors	RP11-782C8.2	Clone_based_vega_gene	ENSG00000232274	tier1			NA	NA	NA	NA	NA	NA
PRODH2	0	genome.wustl.edu	37	19	36293961	36293961	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	19	36293961	36293961	G	T	SNP	PRODH2	ENST00000301175	human	ensembl	74_37	-1	known	missense	c.1249	p.L417M	1.000	pfam_Proline_DH	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799	tier1	-	-	64	0	0.00	7	30	81.08
TIE1	0	genome.wustl.edu	37	1	43783334	43783334	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	43783334	43783334	G	A	SNP	TIE1	ENST00000372476	human	ensembl	74_37	+1	known	missense	c.2720	p.C907Y	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Ig_sub,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TIE1	HGNC	ENSG00000066056	tier1	-	-	73	0	0.00	56	9	13.85
CCDC134	0	genome.wustl.edu	37	22	42205936	42205936	+	Silent	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	22	42205936	42205936	C	T	SNP	CCDC134	ENST00000255784	human	ensembl	74_37	+1	known	silent	c.157	p.L53	1.000	NULL	NULL	-	no_errors	CCDC134	HGNC	ENSG00000100147	tier1	-	-	129	0	0.00	72	45	38.46
SUMO3	0	genome.wustl.edu	37	21	46228430	46228430	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	21	46228430	46228430	A	-	DEL	SUMO3	ENST00000397893	human	ensembl	74_37	-1	putative	frame_shift_del	c.276	p.F92fs	0.008	NULL	pfam_Rad60/SUMO_like,pfam_Ubiquitin_dom,smart_Ubiquitin_dom	-	no_errors	SUMO3	HGNC	ENSG00000184900	tier1			28	0	0.00	21	3	12.50
MALAT1	0	genome.wustl.edu	37	11	65272832	65272832	+	RNA	SNP	G	G	C			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	11	65272832	65272832	G	C	SNP	MALAT1	ENST00000534336	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	tier1	-	-	125	0	0.00	51	47	47.96
PTPRM	0	genome.wustl.edu	37	18	8380421	8380421	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	18	8380421	8380421	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	missense	c.3917	p.A1306V	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	tier1	-	-	100	0	0.00	67	45	40.18
TSPY1	0	genome.wustl.edu	37	Y	9304680	9304680	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	Y	9304680	9304680	G	A	SNP	TSPY1	ENST00000451548	human	ensembl	74_37	+1	known	missense	c.71	p.R24Q	0.998	NULL	pfam_NAP_family	-	no_errors	TSPY1	HGNC	ENSG00000258992	tier1	-	-	299	0	0.00	276	32	10.39
TLK2	0	genome.wustl.edu	37	17	60631103	60631142	+	Frame_Shift_Del	DEL	ATGATTTATTAAGAGTAAGTATTAAAATGTAAGAGATTTT	ATGATTTATTAAGAGTAAGTATTAAAATGTAAGAGATTTT	-			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	ATGATTTATTAAGAGTAAGTATTAAAATGTAAGAGATTTT	ATGATTTATTAAGAGTAAGTATTAAAATGTAAGAGATTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	17	60631103	60631142	ATGATTTATTAAGAGTAAGTATTAAAATGTAAGAGATTTT	-	DEL	TLK2	ENST00000326270	human	ensembl	74_37	+1	known	frame_shift_del	c.707_720	p.D236fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.994:0.999:1.000:1.000:1.000:1.000:1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TLK2	HGNC	ENSG00000146872	tier1			NA	NA	NA	NA	NA	NA
ZAN	0	genome.wustl.edu	37	7	100385562	100385596	+	Frame_Shift_Del	DEL	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	7	100385562	100385596	GCTTCAGCTACCGCTTGCAAGGCCGCATGACCTAT	-	DEL	ZAN	ENST00000546292	human	ensembl	74_37	+1	known	frame_shift_del	c.7028_7062	p.F2344fs	0.013:0.005:0.000:0.001:0.000:0.000:0.005:0.239:0.512:0.532:0.543:0.259:0.193:0.551:0.747:0.746:0.691:0.313:0.001:0.036:0.867:0.876:0.710:0.622:0.357:0.357:0.884:0.969:0.998:1.000:1.000:1.000:1.000:0.989:0.652	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_MAM_dom,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_ConA-like_lec_gl_sf,superfamily_TIL_dom,smart_MAM_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_MAM_dom	-	no_errors	ZAN	HGNC	ENSG00000146839	tier1			NA	NA	NA	NA	NA	NA
DCAF8L2	0	genome.wustl.edu	37	X	27765399	27765399	+	Silent	SNP	A	A	G			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	X	27765399	27765399	A	G	SNP	DCAF8L2	ENST00000451261	human	ensembl	74_37	+1	known	silent	c.387	p.E129	0.009	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186	tier1	-	-	20	0	0.00	17	6	25.00
SPEG	0	genome.wustl.edu	37	2	220327072	220327072	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	2	220327072	220327072	T	G	SNP	SPEG	ENST00000396695	human	ensembl	74_37	+1	known	missense	c.293	p.I98S	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SPEG	HGNC	ENSG00000072195	tier1	-	-	70	0	0.00	25	25	50.00
AK5	0	genome.wustl.edu	37	1	77984373	77984373	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	77984373	77984373	G	C	SNP	AK5	ENST00000354567	human	ensembl	74_37	+1	known	missense	c.1272	p.L424F	0.998	pfam_Adenylate_kin,superfamily_P-loop_NTPase,tigrfam_Adenylate_kin1	pfam_Adenylate_kin,pfam_Dpy-30_motif,superfamily_P-loop_NTPase,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin,tigrfam_Adenylate_kin1	-	no_errors	AK5	HGNC	ENSG00000154027	tier1	-	-	91	0	0.00	63	32	33.68
AK5	0	genome.wustl.edu	37	1	77984281	77984281	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	77984281	77984281	G	A	SNP	AK5	ENST00000354567	human	ensembl	74_37	+1	known	missense	c.1180	p.E394K	1.000	pfam_Adenylate_kin,superfamily_P-loop_NTPase,tigrfam_Adenylate_kin1	pfam_Adenylate_kin,pfam_Dpy-30_motif,superfamily_P-loop_NTPase,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,prints_Adenylate_kin,tigrfam_Adenylate_kin1	-	no_errors	AK5	HGNC	ENSG00000154027	tier1	-	-	83	0	0.00	68	40	37.04
PCDHB11	0	genome.wustl.edu	37	5	140579996	140579996	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	5	140579996	140579996	G	T	SNP	PCDHB11	ENST00000354757	human	ensembl	74_37	+1	known	missense	c.649	p.G217C	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHB11	HGNC	ENSG00000197479	tier1	-	-	162	0	0.00	88	55	38.46
ENPP3	0	genome.wustl.edu	37	6	131992466	131992466	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	6	131992466	131992466	C	T	SNP	ENPP3	ENST00000357639	human	ensembl	74_37	+1	known	missense	c.641	p.T214M	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,pfam_Somatomedin_B_dom,pfam_DNA/RNA_non-sp_Endonuclease,superfamily_Alkaline_phosphatase_core,smart_Somatomedin_B_dom,smart_DNA/RNA_non-sp_Endonuclease,smart_Extracellular_endonuc_su_A,pfscan_Somatomedin_B_dom	-	no_errors	ENPP3	HGNC	ENSG00000154269	tier1	-	-	43	0	0.00	46	4	8.00
EVPLL	0	genome.wustl.edu	37	17	18292454	18292454	+	RNA	SNP	C	C	G			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	17	18292454	18292454	C	G	SNP	EVPLL	ENST00000583003	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.006	-	-	-	no_errors	EVPLL	HGNC	ENSG00000214860	tier1	rs199697056	-	13	0	0.00	13	6	31.58
KRTAP4-16P	0	genome.wustl.edu	37	17	39257945	39257950	+	In_Frame_Del	DEL	CGGGTG	CGGGTG	-			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	CGGGTG	CGGGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	17	39257945	39257950	CGGGTG	-	DEL	KRTAP4-16P	ENST00000440582	human	ensembl	74_37	-1	putative	in_frame_del	c.517_512	p.PPV171in_frame_delL	0.000:0.000:0.001:0.001:0.002:0.010	NULL	NULL	-	no_errors	KRTAP4-16P	HGNC	ENSG00000241241	tier1			NA	NA	NA	NA	NA	NA
AFM	0	genome.wustl.edu	37	4	74361050	74361050	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	4	74361050	74361050	C	G	SNP	AFM	ENST00000226355	human	ensembl	74_37	+1	known	missense	c.1092	p.D364E	0.728	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N	pirsf_Serum_albumin/AFP,pfam_Serum_albumin_N,superfamily_Serum_albumin-like,smart_Serum_albumin_N,prints_ALB/AFP/VDB,prints_Alpha-fetoprotein	-	no_errors	AFM	HGNC	ENSG00000079557	tier1	-	-	114	0	0.00	70	71	50.35
GABBR2	0	genome.wustl.edu	37	9	101258770	101258770	+	Silent	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	9	101258770	101258770	C	T	SNP	GABBR2	ENST00000259455	human	ensembl	74_37	-1	known	silent	c.657	p.L219	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_GABA_rcpt_B2,prints_GPCR_3_GABA_rcpt_B,prints_GPCR_3_GABA_rcpt_B1,prints_GPCR_3,pfscan_GPCR_3_C	-	no_errors	GABBR2	HGNC	ENSG00000136928	tier1	-	-	36	0	0.00	45	4	8.16
CAMKK1	0	genome.wustl.edu	37	17	3788691	3788691	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	17	3788691	3788691	G	T	SNP	CAMKK1	ENST00000381771	human	ensembl	74_37	-1	known	missense	c.291	p.S97R	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CAMKK1	HGNC	ENSG00000004660	tier1	-	-	185	0	0.00	19	97	83.62
OPLAH	0	genome.wustl.edu	37	8	145110770	145110770	+	Silent	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	8	145110770	145110770	G	A	SNP	OPLAH	ENST00000426825	human	ensembl	74_37	-1	known	silent	c.2169	p.A723	0.004	NULL	pfam_Hydantoinase_B,pfam_Hydantoinase_A,pfam_Hydant_A_N	-	no_errors	OPLAH	HGNC	ENSG00000178814	tier1	-	-	115	0	0.00	68	54	44.26
CHAMP1	0	genome.wustl.edu	37	13	115090959	115090959	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	13	115090959	115090959	C	G	SNP	CHAMP1	ENST00000361283	human	ensembl	74_37	+1	known	missense	c.1642	p.R548G	0.995	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CHAMP1	HGNC	ENSG00000198824	tier1	-	-	63	0	0.00	50	14	21.88
GCLC	0	genome.wustl.edu	37	6	53409419	53409419	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	6	53409419	53409419	G	C	SNP	GCLC	ENST00000229416	human	ensembl	74_37	-1	known	missense	c.25	p.P9A	1.000	NULL	pfam_GCS	-	no_errors	GCLC	HGNC	ENSG00000001084	tier1	-	-	114	0	0.00	66	42	38.89
ATP6V1A	0	genome.wustl.edu	37	3	113505230	113505230	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	3	113505230	113505230	C	T	SNP	ATP6V1A	ENST00000273398	human	ensembl	74_37	+1	known	missense	c.716	p.P239L	1.000	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573	tier1	-	-	240	0	0.00	176	124	41.06
KIAA1549	0	genome.wustl.edu	37	7	138602177	138602177	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	7	138602177	138602177	G	A	SNP	KIAA1549	ENST00000422774	human	ensembl	74_37	-1	known	missense	c.2195	p.A732V	0.116	NULL	NULL	-	no_errors	KIAA1549	HGNC	ENSG00000122778	tier1	-	-	75	0	0.00	57	37	39.36
POM121L1P	0	genome.wustl.edu	37	22	22985468	22985468	+	RNA	SNP	T	T	C			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	22	22985468	22985468	T	C	SNP	POM121L1P	ENST00000402027	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.717	-	-	-	no_errors	POM121L1P	HGNC	ENSG00000183169	tier1	-	-	370	0	0.00	238	148	38.24
MTPAP	0	genome.wustl.edu	37	10	30653860	30653860	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	10	30653860	30653860	C	T	SNP	MTPAP	ENST00000358107	human	ensembl	74_37	-1	known	missense	c.322	p.G108S	0.001	NULL	pfam_PAP_assoc	-	no_errors	MTPAP	HGNC	ENSG00000107951	tier1	-	-	176	0	0.00	165	54	24.66
PPAT	0	genome.wustl.edu	37	4	57301629	57301629	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	4	57301629	57301629	C	A	SNP	PPAT	ENST00000264220	human	ensembl	74_37	-1	known	missense	c.15	p.E5D	0.997	pirsf_Amd_phspho_trans	pfam_GATase_dom,pfam_PRibTrfase_dom,pirsf_Amd_phspho_trans,tigrfam_Amd_phspho_trans	-	no_errors	PPAT	HGNC	ENSG00000128059	tier1	-	-	93	0	0.00	51	34	40.00
ENTPD1-AS1	0	genome.wustl.edu	37	10	97515949	97515949	+	RNA	DEL	G	G	-			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	10	97515949	97515949	G	-	DEL	ENTPD1-AS1	ENST00000416301	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.906	-	-	-	no_errors	ENTPD1-AS1	HGNC	ENSG00000226688	tier1			74	0	0.00	68	7	9.33
PTCHD2	0	genome.wustl.edu	37	1	11596444	11596444	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	11596444	11596444	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.3880	p.V1294I	1.000	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	tier1	-	-	175	0	0.00	11	89	89.00
CACNA1S	0	genome.wustl.edu	37	1	201038658	201038658	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	201038658	201038658	A	C	SNP	CACNA1S	ENST00000362061	human	ensembl	74_37	-1	known	missense	c.2432	p.L811R	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	tier1	-	-	85	0	0.00	89	11	11.00
TPTE	0	genome.wustl.edu	37	21	10951356	10951356	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	21	10951356	10951356	T	G	SNP	TPTE	ENST00000361285	human	ensembl	74_37	-1	known	missense	c.356	p.K119T	0.000	NULL	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	tier1	-	-	717	1	0.14	957	108	10.12
OBSCN	0	genome.wustl.edu	37	1	228521396	228521396	+	Silent	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	228521396	228521396	C	T	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	silent	c.15969	p.V5323	0.827	pfam_Ig_I-set,smart_Ig_sub2,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	136	0	0.00	74	53	41.73
COL12A1	0	genome.wustl.edu	37	6	75848600	75848600	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	6	75848600	75848600	C	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.5035	p.A1679T	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	tier1	-	-	46	0	0.00	51	8	13.56
ZBTB42	0	genome.wustl.edu	37	14	105268140	105268140	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	14	105268140	105268140	C	G	SNP	ZBTB42	ENST00000342537	human	ensembl	74_37	+1	known	missense	c.606	p.H202Q	0.999	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB42	HGNC	ENSG00000179627	tier1	-	-	74	0	0.00	31	35	53.03
ANKRD20A1	0	genome.wustl.edu	37	9	67968798	67968798	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	9	67968798	67968798	T	C	SNP	ANKRD20A1	ENST00000377477	human	ensembl	74_37	+1	known	missense	c.2357	p.M786T	0.157	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD20A1	HGNC	ENSG00000196774	tier1	rs201758821	-	9	0	0.00	4	6	60.00
MAGEB2	0	genome.wustl.edu	37	X	30236779	30236779	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	X	30236779	30236779	C	T	SNP	MAGEB2	ENST00000378988	human	ensembl	74_37	+1	known	missense	c.82	p.P28S	0.003	pfam_Melanoma_ass_antigen_N	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEB2	HGNC	ENSG00000099399	tier1	-	-	72	0	0.00	8	82	90.11
SEC22B	0	genome.wustl.edu	37	1	145116561	145116561	+	RNA	SNP	T	T	C			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	145116561	145116561	T	C	SNP	SEC22B	ENST00000453618	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SEC22B	HGNC	ENSG00000223380	tier1	-	-	399	0	0.00	339	41	10.79
ASTN2	0	genome.wustl.edu	37	9	119976716	119976716	+	Silent	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	9	119976716	119976716	G	A	SNP	ASTN2	ENST00000313400	human	ensembl	74_37	-1	known	silent	c.936	p.D312	0.576	NULL	pfam_MACPF,superfamily_Fibronectin_type3,smart_MACPF	-	no_errors	ASTN2	HGNC	ENSG00000148219	tier1	-	-	111	0	0.00	74	54	42.19
SLC45A4	0	genome.wustl.edu	37	8	142222376	142222376	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	8	142222376	142222376	C	A	SNP	SLC45A4	ENST00000517878	human	ensembl	74_37	-1	known	missense	c.2221	p.G741C	0.000	NULL	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567	tier1	-	-	76	0	0.00	58	22	27.50
A2M	0	genome.wustl.edu	37	12	9229983	9229983	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	12	9229983	9229983	A	C	SNP	A2M	ENST00000318602	human	ensembl	74_37	-1	known	missense	c.3310	p.Y1104D	1.000	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,superfamily_Beta-lactam/transpept-like,superfamily_Cupredoxin	-	no_errors	A2M	HGNC	ENSG00000175899	tier1	-	-	63	0	0.00	5	40	88.89
STRIP1	0	genome.wustl.edu	37	1	110580694	110580697	+	RNA	DEL	ATAT	ATAT	-			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	ATAT	ATAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	110580694	110580697	ATAT	-	DEL	STRIP1	ENST00000489059	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors	STRIP1	HGNC	ENSG00000143093	tier1			46	0	0.00	43	5	10.42
STX12	0	genome.wustl.edu	37	1	28128387	28128387	+	RNA	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	1	28128387	28128387	G	A	SNP	STX12	ENST00000468761	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	STX12	HGNC	ENSG00000117758	tier1	-	-	103	0	0.00	67	56	45.53
XAF1	0	genome.wustl.edu	37	17	6663165	6663165	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	17	6663165	6663165	G	A	SNP	XAF1	ENST00000575147	human	ensembl	74_37	+1	known	nonsense	c.174	p.W58*	0.000	superfamily_TRAF-like	superfamily_TRAF-like	-	no_errors	XAF1	HGNC	ENSG00000132530	tier1	-	-	15	0	0.00	0	9	100.00
PCF11	0	genome.wustl.edu	37	11	82877729	82877729	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	11	82877729	82877729	G	T	SNP	PCF11	ENST00000298281	human	ensembl	74_37	+1	known	missense	c.1790	p.W597L	1.000	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_CID_dom	-	no_errors	PCF11	HGNC	ENSG00000165494	tier1	-	-	130	0	0.00	47	53	53.00
GNAT1	0	genome.wustl.edu	37	3	50229150	50229164	+	In_Frame_Del	DEL	GCTGGGACCATGGGG	GCTGGGACCATGGGG	-			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	GCTGGGACCATGGGG	GCTGGGACCATGGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	3	50229150	50229164	GCTGGGACCATGGGG	-	DEL	GNAT1	ENST00000232461	human	ensembl	74_37	+1	known	in_frame_del	c.10_6	p.11in_frame_del	0.028:0.025:0.005:0.099:0.108:0.097:0.110:0.223:0.447:0.998:1.000:1.000:1.000:1.000:1.000	pfam_Gprotein_alpha_su,smart_Gprotein_alpha_su	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_I	-	no_errors	GNAT1	HGNC	ENSG00000114349	tier1			NA	NA	NA	NA	NA	NA
RNU7-1	0	genome.wustl.edu	37	12	7053098	7053099	+	RNA	INS	-	-	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	12	7053098	7053099	-	T	INS	RNU7-1	ENST00000607421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	U47924.31	Clone_based_vega_gene	ENSG00000272173	tier1			51	0	0.00	11	18	62.07
PTPRM	0	genome.wustl.edu	37	18	8380423	8380423	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	18	8380423	8380423	C	T	SNP	PTPRM	ENST00000400060	human	ensembl	74_37	+1	known	nonsense	c.3919	p.Q1307*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRM	HGNC	ENSG00000173482	tier1	-	-	99	0	0.00	69	43	38.39
ATP6V1A	0	genome.wustl.edu	37	3	113505151	113505151	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	3	113505151	113505151	C	G	SNP	ATP6V1A	ENST00000273398	human	ensembl	74_37	+1	known	missense	c.637	p.Q213E	0.999	superfamily_P-loop_NTPase,tigrfam_ATPase_V1-cplx_asu	pfam_ATPase_F1/V1/A1_a/bsu_nucl-bd,pfam_ATPase_F1/V1/A1-cplx_a/bsu_C,pfam_ATPase_F1_a/bsu_N,superfamily_P-loop_NTPase,superfamily_ATPase_F1/V1/A1-cplx_a/bsu_C,superfamily_ATPase_F1_a/bsu_N,tigrfam_ATPase_V1-cplx_asu	-	no_errors	ATP6V1A	HGNC	ENSG00000114573	tier1	-	-	172	1	0.58	137	82	37.44
AP5B1	0	genome.wustl.edu	37	11	65546103	65546103	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	11	65546103	65546103	G	A	SNP	AP5B1	ENST00000532090	human	ensembl	74_37	-1	novel	missense	c.1861	p.H621Y	1.000	NULL	NULL	-	no_errors	AP5B1	HGNC	ENSG00000254470	tier1	-	-	156	0	0.00	106	94	47.00
ENSG00000253200	0	genome.wustl.edu	37	8	22472281	22472281	+	RNA	SNP	A	A	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	8	22472281	22472281	A	T	SNP	ENSG00000253200	ENST00000521025	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-582J16.5	Clone_based_vega_gene	ENSG00000253200	tier1	rs113423385	-	16	0	0.00	14	6	30.00
PLXNB1	0	genome.wustl.edu	37	3	48465046	48465046	+	Silent	SNP	G	G	C			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	3	48465046	48465046	G	C	SNP	PLXNB1	ENST00000296440	human	ensembl	74_37	-1	known	silent	c.975	p.P325	0.802	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT,pfam_Semap_dom,pfam_Plexin_repeat,superfamily_Semap_dom,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_IPT,pfscan_Semap_dom	-	no_errors	PLXNB1	HGNC	ENSG00000164050	tier1	-	-	120	0	0.00	64	52	44.83
TP53	0	genome.wustl.edu	37	17	7576852	7576852	+	Splice_Site	SNP	C	C	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	17	7576852	7576852	C	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.993+1	e8+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs11575997	-	131	0	0.00	7	91	92.86
STIM2	0	genome.wustl.edu	37	4	27010131	27010131	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	4	27010131	27010131	C	T	SNP	STIM2	ENST00000382009	human	ensembl	74_37	+1	known	missense	c.1516	p.H506Y	1.000	NULL	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,pfscan_SAM	-	no_errors	STIM2	HGNC	ENSG00000109689	tier1	-	-	95	0	0.00	64	51	44.35
LRRC56	0	genome.wustl.edu	37	11	554105	554105	+	Silent	SNP	G	G	A			TCGA-DX-A48V-01A-11D-A307-09	TCGA-DX-A48V-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	da538815-9376-42e8-a240-698c84a0b9ff	0592a9f9-dc45-4eb6-88d6-5fb679f03b4c	11	554105	554105	G	A	SNP	LRRC56	ENST00000270115	human	ensembl	74_37	+1	known	silent	c.1458	p.G486	0.537	NULL	NULL	-	no_errors	LRRC56	HGNC	ENSG00000161328	tier1	-	-	65	0	0.00	58	10	14.71
