Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SLC4A5	0	genome.wustl.edu	37	2	74474299	74474299	+	Silent	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	2	74474299	74474299	G	T	SNP	SLC4A5	ENST00000357822	human	ensembl	74_37	-1	known	silent	c.1923	p.S641	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A5	HGNC	ENSG00000188687	tier1	-	-	46	0	0.00	42	4	8.70
MAN1B1	0	genome.wustl.edu	37	9	140002840	140002840	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	9	140002840	140002840	G	T	SNP	MAN1B1	ENST00000371589	human	ensembl	74_37	+1	known	missense	c.1897	p.V633F	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1B1	HGNC	ENSG00000177239	tier1	-	-	25	0	0.00	10	8	44.44
SP110	0	genome.wustl.edu	37	2	231033804	231033804	+	RNA	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	2	231033804	231033804	C	A	SNP	SP110	ENST00000480916	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.663	-	-	-	no_errors	SP110	HGNC	ENSG00000135899	tier1	-	-	47	0	0.00	35	4	10.26
GATA4	0	genome.wustl.edu	37	8	11615950	11615950	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	8	11615950	11615950	T	C	SNP	GATA4	ENST00000335135	human	ensembl	74_37	+1	known	missense	c.1295	p.L432S	1.000	pirsf_TF_GATA_4/5/6	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA4	HGNC	ENSG00000136574	tier1	-	-	40	0	0.00	25	19	43.18
PCDHB3	0	genome.wustl.edu	37	5	140482187	140482187	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	5	140482187	140482187	C	T	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1954	p.R652C	0.752	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	tier1	-	-	65	0	0.00	40	23	36.51
NFKB1	0	genome.wustl.edu	37	4	103531766	103531766	+	Silent	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	4	103531766	103531766	C	A	SNP	NFKB1	ENST00000226574	human	ensembl	74_37	+1	known	silent	c.2262	p.L754	0.944	superfamily_Ankyrin_rpt-contain_dom	pfam_RHD,pfam_Ankyrin_rpt,pfam_Death_domain,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like_dom,smart_IPT,smart_Ankyrin_rpt,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD,prints_NF_Rel_Dor,prints_Ankyrin_rpt	-	no_errors	NFKB1	HGNC	ENSG00000109320	tier1	-	-	34	0	0.00	32	4	11.11
DENND4B	0	genome.wustl.edu	37	1	153914353	153914353	+	Silent	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	1	153914353	153914353	G	T	SNP	DENND4B	ENST00000361217	human	ensembl	74_37	-1	known	silent	c.1047	p.P349	1.000	pfam_DENN_dom,smart_DENN_dom,pfscan_DENN_dom	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4B	HGNC	ENSG00000198837	tier1	-	-	41	0	0.00	45	4	8.16
CTTNBP2NL	0	genome.wustl.edu	37	1	112991755	112991755	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	1	112991755	112991755	G	T	SNP	CTTNBP2NL	ENST00000271277	human	ensembl	74_37	+1	known	missense	c.291	p.M97I	1.000	pfam_Cortactin-binding_p2_N	pfam_Cortactin-binding_p2_N	-	no_errors	CTTNBP2NL	HGNC	ENSG00000143079	tier1	-	-	35	0	0.00	17	3	15.00
TTC39A	0	genome.wustl.edu	37	1	51753754	51753754	+	RNA	DEL	A	A	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	1	51753754	51753754	A	-	DEL	TTC39A	ENST00000534098	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TTC39A	HGNC	ENSG00000085831	tier1			35	0	0.00	27	3	10.00
COQ9	0	genome.wustl.edu	37	16	57486822	57486822	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	16	57486822	57486822	G	T	SNP	COQ9	ENST00000262507	human	ensembl	74_37	+1	known	missense	c.352	p.A118S	0.602	superfamily_Homeodomain-like,tigrfam_Ubiq_biosynth_COQ9	pfam_COQ9,superfamily_Homeodomain-like,tigrfam_Ubiq_biosynth_COQ9	-	no_errors	COQ9	HGNC	ENSG00000088682	tier1	-	-	44	0	0.00	46	4	8.00
LDLRAP1	0	genome.wustl.edu	37	1	25880262	25880262	+	RNA	DEL	A	A	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	1	25880262	25880262	A	-	DEL	LDLRAP1	ENST00000488127	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	LDLRAP1	HGNC	ENSG00000157978	tier1			10	0	0.00	11	5	31.25
LRP1	0	genome.wustl.edu	37	12	57561246	57561246	+	Silent	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	12	57561246	57561246	C	A	SNP	LRP1	ENST00000243077	human	ensembl	74_37	+1	known	silent	c.2934	p.P978	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	tier1	-	-	48	0	0.00	45	4	8.16
LRBA	0	genome.wustl.edu	37	4	151502697	151502698	+	RNA	INS	-	-	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	4	151502697	151502698	-	A	INS	LRBA	ENST00000503716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	LRBA	HGNC	ENSG00000198589	tier1			12	0	0.00	12	2	14.29
SAMD3	0	genome.wustl.edu	37	6	130505678	130505678	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	6	130505678	130505678	G	T	SNP	SAMD3	ENST00000368134	human	ensembl	74_37	-1	known	nonsense	c.474	p.C158*	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD3	HGNC	ENSG00000164483	tier1	-	-	34	0	0.00	19	3	13.64
CAPN11	0	genome.wustl.edu	37	6	44137083	44137083	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	6	44137083	44137083	G	A	SNP	CAPN11	ENST00000398776	human	ensembl	74_37	+1	known	missense	c.154	p.V52M	0.252	NULL	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN11	HGNC	ENSG00000137225	tier1	-	-	46	0	0.00	38	4	9.52
ABCD3	0	genome.wustl.edu	37	1	94948795	94948795	+	Silent	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	1	94948795	94948795	G	T	SNP	ABCD3	ENST00000454898	human	ensembl	74_37	+1	known	silent	c.969	p.L323	1.000	pfam_ABC_Peroxi_TM,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	pfam_ABC_Peroxi_TM,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,tigrfam_FA_transporter	-	no_errors	ABCD3	HGNC	ENSG00000117528	tier1	-	-	83	0	0.00	38	4	9.30
STRADB	0	genome.wustl.edu	37	2	202319526	202319526	+	RNA	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	2	202319526	202319526	G	T	SNP	STRADB	ENST00000488196	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	STRADB	HGNC	ENSG00000082146	tier1	-	-	35	0	0.00	36	4	10.00
PSMA8	0	genome.wustl.edu	37	18	23731924	23731924	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	18	23731924	23731924	G	A	SNP	PSMA8	ENST00000308268	human	ensembl	74_37	+1	known	missense	c.350	p.R117H	1.000	pfam_Proteasome_sua/b	pfam_Proteasome_sua/b,pfam_Proteasome_asu_N,smart_Proteasome_asu_N	-	no_errors	PSMA8	HGNC	ENSG00000154611	tier1	-	-	59	0	0.00	44	38	46.34
BTBD11	0	genome.wustl.edu	37	12	108013765	108013765	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	12	108013765	108013765	G	A	SNP	BTBD11	ENST00000280758	human	ensembl	74_37	+1	known	missense	c.2455	p.V819I	1.000	NULL	pfam_Ankyrin_rpt,pfam_BTB_POZ,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,superfamily_Histone-fold,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	BTBD11	HGNC	ENSG00000151136	tier1	rs201620480	-	20	0	0.00	22	14	38.89
AGAP1	0	genome.wustl.edu	37	2	236877199	236877199	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	2	236877199	236877199	G	A	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.1577	p.R526K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	tier1	rs3207205	-	66	0	0.00	58	30	33.71
FIP1L1	0	genome.wustl.edu	37	4	54319248	54319249	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	4	54319248	54319249	AG	-	DEL	FIP1L1	ENST00000337488	human	ensembl	74_37	+1	known	frame_shift_del	c.1447_1448	p.E486fs	0.975:0.991	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216	tier1			22	0	0.00	18	3	14.29
YAF2	0	genome.wustl.edu	37	12	42629562	42629563	+	RNA	INS	-	-	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	12	42629562	42629563	-	A	INS	YAF2	ENST00000541702	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986:0.986	-	-	-	no_errors	YAF2	HGNC	ENSG00000015153	tier1			21	0	0.00	18	3	14.29
PCDH12	0	genome.wustl.edu	37	5	141334716	141334716	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	5	141334716	141334716	G	A	SNP	PCDH12	ENST00000231484	human	ensembl	74_37	-1	known	nonsense	c.2701	p.Q901*	0.000	NULL	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH12	HGNC	ENSG00000113555	tier1	-	-	59	0	0.00	53	34	39.08
BPTF	0	genome.wustl.edu	37	17	65955758	65955759	+	In_Frame_Ins	INS	-	-	CCTCCAGCC			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	17	65955758	65955759	-	CCTCCAGCC	INS	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	in_frame_ins	c.8406_8407	p.2806in_frame_insPAP	0.001:0.001	superfamily_Bromodomain,superfamily_Adenylate_cyclase-assoc_CAP_N	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	tier1			NA	NA	NA	NA	NA	NA
ROS1	0	genome.wustl.edu	37	6	117709109	117709109	+	Silent	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	6	117709109	117709109	G	T	SNP	ROS1	ENST00000368508	human	ensembl	74_37	-1	known	silent	c.1848	p.T616	0.018	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	tier1	-	-	55	0	0.00	23	3	11.54
ADAMTS1	0	genome.wustl.edu	37	21	28214702	28214702	+	Silent	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	21	28214702	28214702	G	T	SNP	ADAMTS1	ENST00000284984	human	ensembl	74_37	-1	known	silent	c.1033	p.R345	0.999	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS1,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS1	HGNC	ENSG00000154734	tier1	-	-	52	0	0.00	46	4	8.00
CELSR1	0	genome.wustl.edu	37	22	46931967	46931967	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	22	46931967	46931967	C	A	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.1101	p.E367D	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	tier1	-	-	35	0	0.00	34	4	10.53
ENSG00000232274	0	genome.wustl.edu	37	1	143210392	143210396	+	RNA	DEL	ATAAC	ATAAC	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	ATAAC	ATAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	1	143210392	143210396	ATAAC	-	DEL	ENSG00000232274	ENST00000412204	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.841:0.809:0.673:0.586:0.231	-	-	-	no_errors	RP11-782C8.2	Clone_based_vega_gene	ENSG00000232274	tier1			NA	NA	NA	NA	NA	NA
FYB	0	genome.wustl.edu	37	5	39153561	39153561	+	Silent	SNP	C	C	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	5	39153561	39153561	C	T	SNP	FYB	ENST00000540520	human	ensembl	74_37	-1	known	silent	c.1311	p.P437	0.790	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain	-	no_errors	FYB	HGNC	ENSG00000082074	tier1	rs115158663	GMAF=0.0005	81	0	0.00	54	35	39.33
ENSG00000261553	0	genome.wustl.edu	37	13	76123902	76123916	+	RNA	DEL	GGCGGCGGCGGCGAA	GGCGGCGGCGGCGAA	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	GGCGGCGGCGGCGAA	GGCGGCGGCGGCGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	13	76123902	76123916	GGCGGCGGCGGCGAA	-	DEL	ENSG00000261553	ENST00000563635	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.972:0.982:0.960:0.622:0.506:0.040:0.014:0.013:0.030:0.026:0.014:0.007:0.004:0.000:0.000	-	-	-	no_errors	RP11-29G8.3	Clone_based_vega_gene	ENSG00000261553	tier1			NA	NA	NA	NA	NA	NA
NCAPH2	0	genome.wustl.edu	37	22	50961469	50961469	+	Silent	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	22	50961469	50961469	C	A	SNP	NCAPH2	ENST00000299821	human	ensembl	74_37	+1	known	silent	c.1554	p.I518	1.000	pfam_Condensin_II_H2-like	pfam_Condensin_II_H2-like	-	no_errors	NCAPH2	HGNC	ENSG00000025770	tier1	-	-	38	0	0.00	40	4	9.09
MAGEA1	0	genome.wustl.edu	37	X	152482246	152482246	+	Silent	SNP	C	C	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	X	152482246	152482246	C	T	SNP	MAGEA1	ENST00000356661	human	ensembl	74_37	-1	known	silent	c.765	p.P255	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA1	HGNC	ENSG00000198681	tier1	-	-	93	0	0.00	76	47	38.21
AGAP1	0	genome.wustl.edu	37	2	236877223	236877223	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	2	236877223	236877223	G	C	SNP	AGAP1	ENST00000304032	human	ensembl	74_37	+1	known	missense	c.1601	p.S534T	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_ArfGAP,pfam_MIRO-like,pfam_Small_GTPase,pfam_Ankyrin_rpt,pfam_Pleckstrin_homology,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP,prints_Small_GTPase	-	no_errors	AGAP1	HGNC	ENSG00000157985	tier1	-	-	55	0	0.00	50	26	34.21
TREH	0	genome.wustl.edu	37	11	118534048	118534048	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	11	118534048	118534048	C	A	SNP	TREH	ENST00000264029	human	ensembl	74_37	-1	known	nonsense	c.190	p.E64*	1.000	pfam_Glyco_hydro_37	pfam_Glyco_hydro_37,superfamily_6-hairpin_glycosidase-like,prints_Glyco_hydro_37	-	no_errors	TREH	HGNC	ENSG00000118094	tier1	-	-	58	0	0.00	41	4	8.89
COL4A1	0	genome.wustl.edu	37	13	110831646	110831646	+	Silent	SNP	G	G	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	13	110831646	110831646	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	silent	c.2316	p.I772	0.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	tier1	-	-	41	0	0.00	75	12	13.79
DNAJC1	0	genome.wustl.edu	37	10	22045671	22045671	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	10	22045671	22045671	G	T	SNP	DNAJC1	ENST00000376980	human	ensembl	74_37	-1	known	missense	c.1610	p.A537D	0.996	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_DnaJ_domain,pfam_SANT/Myb,superfamily_DnaJ_domain,superfamily_Homeodomain-like,smart_DnaJ_domain,smart_SANT/Myb,pfscan_Myb-like_dom,pfscan_DnaJ_domain,prints_DnaJ_domain	-	no_errors	DNAJC1	HGNC	ENSG00000136770	tier1	-	-	28	0	0.00	10	3	23.08
CAPRIN1	0	genome.wustl.edu	37	11	34121729	34121730	+	RNA	INS	-	-	CTAT			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	11	34121729	34121730	-	CTAT	INS	CAPRIN1	ENST00000533657	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.640:0.016	-	-	-	no_errors	CAPRIN1	HGNC	ENSG00000135387	tier1			8	0	0.00	6	4	40.00
DOCK10	0	genome.wustl.edu	37	2	225668868	225668868	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	2	225668868	225668868	G	T	SNP	DOCK10	ENST00000258390	human	ensembl	74_37	-1	known	missense	c.4229	p.S1410Y	1.000	superfamily_ARM-type_fold	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	tier1	-	-	49	0	0.00	57	5	8.06
KITLG	0	genome.wustl.edu	37	12	88898935	88898935	+	Splice_Site	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	12	88898935	88898935	C	A	SNP	KITLG	ENST00000228280	human	ensembl	74_37	-1	known	splice_site	c.822+1	e9+1	1.000	-	-	-	no_errors	KITLG	HGNC	ENSG00000049130	tier1	-	-	30	0	0.00	38	4	9.52
CRTAC1	0	genome.wustl.edu	37	10	99664503	99664503	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	10	99664503	99664503	C	A	SNP	CRTAC1	ENST00000370597	human	ensembl	74_37	-1	known	missense	c.919	p.D307Y	1.000	pfam_FG-GAP	pfam_FG-GAP,pfam_UnbV_ASPIC,pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom	-	no_errors	CRTAC1	HGNC	ENSG00000095713	tier1	-	-	36	0	0.00	15	4	21.05
ENSG00000204038	0	genome.wustl.edu	37	10	82013311	82013311	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	10	82013311	82013311	G	T	SNP	ENSG00000204038	ENST00000356374	human	ensembl	74_37	+1	known	missense	c.829	p.G277C	0.243	NULL	NULL	-	no_errors	AL359195.1	Clone_based_ensembl_gene	ENSG00000204038	tier1	-	-	51	0	0.00	22	4	15.38
SCAF11	0	genome.wustl.edu	37	12	46321265	46321265	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	12	46321265	46321265	T	C	SNP	SCAF11	ENST00000369367	human	ensembl	74_37	-1	known	missense	c.2219	p.D740G	0.744	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	SCAF11	HGNC	ENSG00000139218	tier1	-	-	21	0	0.00	8	8	50.00
HKDC1	0	genome.wustl.edu	37	10	70992535	70992535	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	10	70992535	70992535	T	-	DEL	HKDC1	ENST00000354624	human	ensembl	74_37	+1	known	frame_shift_del	c.242	p.S82fs	1.000	pfam_Hexokinase_N	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HKDC1	HGNC	ENSG00000156510	tier1			35	0	0.00	20	2	9.09
ITIH5	0	genome.wustl.edu	37	10	7601820	7601825	+	In_Frame_Del	DEL	TTTTGT	TTTTGT	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	TTTTGT	TTTTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	10	7601820	7601825	TTTTGT	-	DEL	ITIH5	ENST00000397146	human	ensembl	74_37	-1	known	in_frame_del	c.2024_2019	p.KQ673in_frame_del	0.003:0.004:0.004:0.005:0.005:0.008	NULL	pfam_VIT,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH5	HGNC	ENSG00000123243	tier1			NA	NA	NA	NA	NA	NA
ENSG00000214797	0	genome.wustl.edu	37	11	59038010	59038011	+	RNA	INS	-	-	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	11	59038010	59038011	-	A	INS	ENSG00000214797	ENST00000399003	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.000	-	-	-	no_errors	RP11-1036E20.9	Clone_based_vega_gene	ENSG00000214797	tier1			63	0	0.00	47	5	9.62
TMEM88B	0	genome.wustl.edu	37	1	1361531	1361533	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	1	1361531	1361533	GGA	-	DEL	TMEM88B	ENST00000378821	human	ensembl	74_37	+1	novel	in_frame_del	c.24_26	p.E12in_frame_del	0.001:0.809:0.920	NULL	NULL	-	no_errors	TMEM88B	HGNC	ENSG00000205116	tier1			11	0	0.00	6	3	33.33
STPG2	0	genome.wustl.edu	37	4	98865141	98865141	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	4	98865141	98865141	C	A	SNP	STPG2	ENST00000295268	human	ensembl	74_37	-1	known	missense	c.951	p.Q317H	0.055	NULL	NULL	-	no_errors	STPG2	HGNC	ENSG00000163116	tier1	-	-	45	0	0.00	42	4	8.70
NFIL3	0	genome.wustl.edu	37	9	94171898	94171898	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	9	94171898	94171898	C	A	SNP	NFIL3	ENST00000297689	human	ensembl	74_37	-1	known	missense	c.1119	p.M373I	0.119	pfam_Vert_IL3-reg_TF,pirsf_TF_bZIP_E4BP4	pfam_Vert_IL3-reg_TF,pfam_bZIP,smart_bZIP,pirsf_TF_bZIP_E4BP4,pfscan_bZIP	-	no_errors	NFIL3	HGNC	ENSG00000165030	tier1	-	-	31	0	0.00	41	4	8.89
TENM1	0	genome.wustl.edu	37	X	123556417	123556417	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	X	123556417	123556417	G	T	SNP	TENM1	ENST00000422452	human	ensembl	74_37	-1	known	missense	c.4176	p.N1392K	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	TENM1	HGNC	ENSG00000009694	tier1	-	-	27	0	0.00	24	3	11.11
ENSG00000228830	0	genome.wustl.edu	37	1	234742800	234742801	+	RNA	DEL	AT	AT	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	1	234742800	234742801	AT	-	DEL	ENSG00000228830	ENST00000436039	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	RP4-781K5.2	Clone_based_vega_gene	ENSG00000228830	tier1			20	0	0.00	20	3	13.04
RASGRF2	0	genome.wustl.edu	37	5	80375986	80375986	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	5	80375986	80375986	G	T	SNP	RASGRF2	ENST00000265080	human	ensembl	74_37	+1	known	missense	c.934	p.A312S	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	tier1	-	-	59	0	0.00	45	4	8.16
C10orf62	0	genome.wustl.edu	37	10	99349965	99349965	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	10	99349965	99349965	C	A	SNP	C10orf62	ENST00000370640	human	ensembl	74_37	+1	known	nonsense	c.311	p.S104*	0.000	NULL	NULL	-	no_errors	C10orf62	HGNC	ENSG00000203942	tier1	-	-	32	0	0.00	25	4	13.79
ENSG00000221060	0	genome.wustl.edu	37	14	70270921	70270922	+	RNA	INS	-	-	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	14	70270921	70270922	-	T	INS	ENSG00000221060	ENST00000408133	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.003	-	-	-	no_errors	SNORA11	RFAM	ENSG00000221060	tier1			17	0	0.00	11	3	21.43
SENP6	0	genome.wustl.edu	37	6	76376441	76376443	+	In_Frame_Del	DEL	TGA	TGA	-			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	6	76376441	76376443	TGA	-	DEL	SENP6	ENST00000370014	human	ensembl	74_37	+1	known	in_frame_del	c.1008_1010	p.D340in_frame_del	1.000:1.000:1.000	NULL	pfam_Peptidase_C48,pfscan_Peptidase_C48	-	no_errors	SENP6	HGNC	ENSG00000112701	tier1			27	0	0.00	20	3	13.04
MIR145	0	genome.wustl.edu	37	5	148810071	148810072	+	RNA	INS	-	-	C			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	5	148810071	148810072	-	C	INS	MIR145	ENST00000602315	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.002	-	-	-	no_errors	MIR145	HGNC	ENSG00000269936	tier1			8	0	0.00	7	5	41.67
CACNB4	0	genome.wustl.edu	37	2	152830203	152830203	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	2	152830203	152830203	C	A	SNP	CACNB4	ENST00000360283	human	ensembl	74_37	-1	known	nonsense	c.25	p.G9*	1.000	prints_VDCC_L_b3su	pfam_GK/Ca_channel_bsu,pfam_VDCC_L_bsu,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_GK/Ca_channel_bsu,pfscan_SH3_domain,prints_VDCC_L_bsu,prints_VDCC_L_b3su	-	no_errors	CACNB4	HGNC	ENSG00000182389	tier1	-	-	40	0	0.00	29	4	12.12
INO80	0	genome.wustl.edu	37	15	41272454	41272454	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	15	41272454	41272454	C	A	SNP	INO80	ENST00000361937	human	ensembl	74_37	-1	known	missense	c.4638	p.Q1546H	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	tier1	-	-	39	0	0.00	43	4	8.51
HNF1A	0	genome.wustl.edu	37	12	121434574	121434574	+	Silent	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	12	121434574	121434574	G	T	SNP	HNF1A	ENST00000543427	human	ensembl	74_37	+1	known	silent	c.987	p.L329	0.001	NULL	pfam_HNF1b_C,pfam_HNF-1_N,pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Lambda_DNA-bd_dom,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	HNF1A	HGNC	ENSG00000135100	tier1	-	-	44	0	0.00	46	5	9.80
COL4A1	0	genome.wustl.edu	37	13	110831720	110831720	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	13	110831720	110831720	G	A	SNP	COL4A1	ENST00000375820	human	ensembl	74_37	-1	known	missense	c.2242	p.P748S	0.891	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A1	HGNC	ENSG00000187498	tier1	-	-	53	0	0.00	56	20	26.32
SET	0	genome.wustl.edu	37	9	131456028	131456028	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	9	131456028	131456028	G	T	SNP	SET	ENST00000372692	human	ensembl	74_37	+1	known	missense	c.643	p.D215Y	1.000	pfam_NAP_family	pfam_NAP_family	-	no_errors	SET	HGNC	ENSG00000119335	tier1	-	-	40	0	0.00	42	4	8.70
CLCN2	0	genome.wustl.edu	37	3	184069817	184069817	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	3	184069817	184069817	C	A	SNP	CLCN2	ENST00000265593	human	ensembl	74_37	-1	known	missense	c.2399	p.R800L	1.000	pfam_CBS_dom	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl-channel-2	-	no_errors	CLCN2	HGNC	ENSG00000114859	tier1	-	-	28	0	0.00	19	4	17.39
HTATSF1	0	genome.wustl.edu	37	X	135586547	135586547	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6B9-01A-12D-A32I-09	TCGA-DX-A6B9-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e062c178-feb3-4e3f-8ecb-f8bb99831131	d4f1cdfe-f1dd-496c-9021-403dd1e67786	X	135586547	135586547	G	T	SNP	HTATSF1	ENST00000218364	human	ensembl	74_37	+1	known	missense	c.759	p.R253S	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	tier1	-	-	37	0	0.00	28	4	12.50
