Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
BAIAP2-AS1	0	genome.wustl.edu	37	17	79005063	79005063	+	RNA	DEL	C	C	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	17	79005063	79005063	C	-	DEL	BAIAP2-AS1	ENST00000542745	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	BAIAP2-AS1	HGNC	ENSG00000226137	tier1			113	0	0.00	75	29	27.88
RASAL2	0	genome.wustl.edu	37	1	178427011	178427011	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	1	178427011	178427011	G	T	SNP	RASAL2	ENST00000367649	human	ensembl	74_37	+1	known	nonsense	c.2584	p.E862*	0.985	pfam_DUF3498	pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_dom,superfamily_Rho_GTPase_activation_prot,superfamily_C2_dom,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_dom,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP	-	no_errors	RASAL2	HGNC	ENSG00000075391	tier1	-	-	40	0	0.00	42	4	8.70
EWSR1	0	genome.wustl.edu	37	22	29693838	29693838	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	22	29693838	29693838	A	T	SNP	EWSR1	ENST00000414183	human	ensembl	74_37	+1	known	missense	c.1331	p.K444I	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_Znf_RanBP2,pfam_RRM_dom,smart_RRM_dom,smart_Znf_RanBP2,pfscan_Znf_RanBP2,pfscan_RRM_dom	-	no_errors	EWSR1	HGNC	ENSG00000182944	tier1	-	-	82	0	0.00	51	6	10.53
YJEFN3	0	genome.wustl.edu	37	19	19627062	19627062	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	19	19627062	19627062	G	C	SNP	YJEFN3	ENST00000608404	human	ensembl	74_37	+1	known	missense	c.15	p.K5N	1.000	pfam_GRIM-19	pfam_GRIM-19,pfam_YjeF_N_dom,superfamily_YjeF_N_dom	-	no_errors	YJEFN3	HGNC	ENSG00000250067	tier1	rs137852869	-	89	0	0.00	55	38	40.86
FCHO1	0	genome.wustl.edu	37	19	17877435	17877435	+	RNA	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	19	17877435	17877435	G	A	SNP	FCHO1	ENST00000601247	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	FCHO1	HGNC	ENSG00000130475	tier1	-	-	78	0	0.00	101	44	30.34
IGF2BP1	0	genome.wustl.edu	37	17	47121387	47121387	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	17	47121387	47121387	T	C	SNP	IGF2BP1	ENST00000290341	human	ensembl	74_37	+1	known	missense	c.1259	p.I420T	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217	tier1	-	-	110	0	0.00	68	27	28.42
CAPN9	0	genome.wustl.edu	37	1	230898442	230898442	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	1	230898442	230898442	G	A	SNP	CAPN9	ENST00000271971	human	ensembl	74_37	+1	known	missense	c.446	p.R149H	0.999	pfam_Peptidase_C2_calpain_cat,smart_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease,pfscan_Peptidase_C2_calpain_cat	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_dom,prints_Calpain_cysteine_protease,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat	-	no_errors	CAPN9	HGNC	ENSG00000135773	tier1	rs201859022	-	150	0	0.00	54	67	54.47
C3	0	genome.wustl.edu	37	19	6682024	6682024	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	19	6682024	6682024	G	C	SNP	C3	ENST00000245907	human	ensembl	74_37	-1	known	missense	c.4278	p.D1426E	1.000	pfam_A-macroglobulin_rcpt-bd,superfamily_A-macroglobulin_rcpt-bd	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_comp_syst,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,prints_Anaphylatoxn_comp_syst_dom,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain	-	no_errors	C3	HGNC	ENSG00000125730	tier1	-	-	254	0	0.00	356	64	15.24
RINL	0	genome.wustl.edu	37	19	39361491	39361491	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	19	39361491	39361491	T	C	SNP	RINL	ENST00000591812	human	ensembl	74_37	-1	known	missense	c.743	p.D248G	0.121	NULL	pfam_VPS9,smart_VPS9_subgr,pfscan_VPS9	-	no_errors	RINL	HGNC	ENSG00000187994	tier1	-	-	79	0	0.00	74	59	44.03
PCDH15	0	genome.wustl.edu	37	10	55955488	55955488	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	10	55955488	55955488	C	G	SNP	PCDH15	ENST00000320301	human	ensembl	74_37	-1	known	missense	c.1260	p.L420F	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	tier1	-	-	80	0	0.00	9	41	82.00
COL4A3	0	genome.wustl.edu	37	2	228148947	228148947	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	2	228148947	228148947	G	A	SNP	COL4A3	ENST00000396578	human	ensembl	74_37	+1	known	missense	c.2767	p.V923I	0.010	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	tier1	-	-	68	0	0.00	100	17	14.53
LRRC4	0	genome.wustl.edu	37	7	127669285	127669285	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	7	127669285	127669285	G	A	SNP	LRRC4	ENST00000249363	human	ensembl	74_37	-1	known	missense	c.1409	p.T470M	0.813	NULL	pfam_Leu-rich_rpt,pfam_Ig_I-set,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRRC4	HGNC	ENSG00000128594	tier1	-	-	54	0	0.00	31	39	55.71
KIAA1210	0	genome.wustl.edu	37	X	118284427	118284427	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	X	118284427	118284427	C	A	SNP	KIAA1210	ENST00000402510	human	ensembl	74_37	-1	known	missense	c.116	p.S39I	0.000	NULL	NULL	-	no_errors	KIAA1210	HGNC	ENSG00000250423	tier1	-	-	91	0	0.00	44	44	50.00
LOC401286	0	genome.wustl.edu	37	6	168070051	168070051	+	RNA	SNP	G	G	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	6	168070051	168070051	G	C	SNP	LOC401286	ENST00000609107	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-351J23.2	Clone_based_vega_gene	ENSG00000272549	tier1	-	-	87	0	0.00	142	48	25.26
NCOR1	0	genome.wustl.edu	37	17	16004983	16004983	+	Silent	SNP	C	C	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	17	16004983	16004983	C	T	SNP	NCOR1	ENST00000268712	human	ensembl	74_37	-1	known	silent	c.2271	p.T757	0.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	tier1	-	-	141	0	0.00	192	79	29.15
NOP56	0	genome.wustl.edu	37	20	2633378	2633379	+	RNA	INS	-	-	GAGCCTGGGCCT			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	20	2633378	2633379	-	GAGCCTGGGCCT	INS	NOP56	ENST00000469588	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	NOP56	HGNC	ENSG00000101361	tier1			NA	NA	NA	NA	NA	NA
ALG13	0	genome.wustl.edu	37	X	110996301	110996301	+	RNA	SNP	T	T	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	X	110996301	110996301	T	A	SNP	ALG13	ENST00000474121	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014	-	-	-	no_errors	ALG13	HGNC	ENSG00000101901	tier1	-	-	21	0	0.00	12	11	47.83
EIF4G3	0	genome.wustl.edu	37	1	21183897	21183906	+	Frame_Shift_Del	DEL	TTAGTGATTT	TTAGTGATTT	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	TTAGTGATTT	TTAGTGATTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	1	21183897	21183906	TTAGTGATTT	-	DEL	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	frame_shift_del	c.3188_3179	p.K1060fs	1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	tier1			NA	NA	NA	NA	NA	NA
TP53	0	genome.wustl.edu	37	17	7578290	7578290	+	Splice_Site	SNP	C	C	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	17	7578290	7578290	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.560-1	e5-1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	93	0	0.00	14	51	77.27
ANKRD30A	0	genome.wustl.edu	37	10	37488707	37488707	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	10	37488707	37488707	G	C	SNP	ANKRD30A	ENST00000361713	human	ensembl	74_37	+1	known	missense	c.2601	p.W867C	0.004	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD30A	HGNC	ENSG00000148513	tier1	-	-	338	0	0.00	26	143	84.12
CAPS2	0	genome.wustl.edu	37	12	75676046	75676046	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	12	75676046	75676046	A	T	SNP	CAPS2	ENST00000409445	human	ensembl	74_37	-1	known	missense	c.1654	p.S552T	1.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CAPS2	HGNC	ENSG00000180881	tier1	-	-	123	0	0.00	31	55	63.95
COL6A1	0	genome.wustl.edu	37	21	47421263	47421263	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	21	47421263	47421263	A	G	SNP	COL6A1	ENST00000361866	human	ensembl	74_37	+1	known	missense	c.1919	p.K640R	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A1	HGNC	ENSG00000142156	tier1	-	-	79	0	0.00	57	49	46.23
LOC338963	0	genome.wustl.edu	37	15	83380050	83380050	+	RNA	SNP	G	G	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	15	83380050	83380050	G	C	SNP	LOC338963	ENST00000440089	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC105339.1	Clone_based_vega_gene	ENSG00000228141	tier1	-	-	61	0	0.00	40	59	59.00
KCNG4	0	genome.wustl.edu	37	16	84270722	84270722	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	16	84270722	84270722	C	T	SNP	KCNG4	ENST00000308251	human	ensembl	74_37	-1	known	missense	c.370	p.V124M	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv3	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNG4	HGNC	ENSG00000168418	tier1	-	-	119	0	0.00	11	79	87.78
CAPNS1	0	genome.wustl.edu	37	19	36632024	36632025	+	In_Frame_Ins	INS	-	-	GGC			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	19	36632024	36632025	-	GGC	INS	CAPNS1	ENST00000588780	human	ensembl	74_37	+1	known	in_frame_ins	c.111_112	p.41in_frame_insG	0.001:0.907	NULL	pfscan_EF_hand_dom	-	no_errors	CAPNS1	HGNC	ENSG00000126247	tier1			38	0	0.00	28	4	12.50
KREMEN2	0	genome.wustl.edu	37	16	3016141	3016141	+	Silent	SNP	T	T	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	16	3016141	3016141	T	C	SNP	KREMEN2	ENST00000303746	human	ensembl	74_37	+1	known	silent	c.270	p.R90	1.000	pirsf_Kremen,pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pirsf_Kremen,pfam_WSC_carb-bd,pfam_Kringle,pfam_CUB_dom,superfamily_Kringle-like,superfamily_CUB_dom,smart_Kringle,smart_WSC_carb-bd_subgr,smart_CUB_dom,pfscan_CUB_dom,pfscan_Kringle,pfscan_WSC_carb-bd	-	no_errors	KREMEN2	HGNC	ENSG00000131650	tier1	-	-	60	0	0.00	60	17	22.08
THOC3	0	genome.wustl.edu	37	5	175394547	175394548	+	RNA	INS	-	-	ACC			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	5	175394547	175394548	-	ACC	INS	THOC3	ENST00000510300	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	THOC3	HGNC	ENSG00000051596	tier1			22	0	0.00	27	7	20.59
C1orf143	0	genome.wustl.edu	37	1	218699060	218699061	+	RNA	DEL	AA	AA	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	1	218699060	218699061	AA	-	DEL	C1orf143	ENST00000491260	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.028:0.000	-	-	-	no_errors	C1orf143	HGNC	ENSG00000228208	tier1			29	0	0.00	18	4	18.18
ENSG00000257743	0	genome.wustl.edu	37	7	141859096	141859096	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	7	141859096	141859096	G	A	SNP	ENSG00000257743	ENST00000477922	human	ensembl	74_37	+1	putative	missense	c.2173	p.E725K	0.000	pfam_Glyco_hydro_31	pfam_Glyco_hydro_31,pfam_P_trefoil,superfamily_Glycoside_hydrolase_SF,superfamily_Gal_mutarotase_SF_dom,superfamily_P_trefoil,smart_P_trefoil	-	no_errors	RP11-1220K2.2	Clone_based_vega_gene	ENSG00000257743	tier1	-	-	80	0	0.00	63	61	49.19
TEK	0	genome.wustl.edu	37	9	27158026	27158026	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	9	27158026	27158026	A	-	DEL	TEK	ENST00000380036	human	ensembl	74_37	+1	known	frame_shift_del	c.250	p.V86fs	1.000	pfam_Tyr_kin_Tie2_Ig-like_dom-1_N	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Tyr_kin_Tie2_Ig-like_dom-1_N,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	TEK	HGNC	ENSG00000120156	tier1			147	0	0.00	136	35	20.47
MBNL1	0	genome.wustl.edu	37	3	152016827	152016827	+	RNA	SNP	G	G	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	3	152016827	152016827	G	C	SNP	MBNL1	ENST00000466565	human	ensembl	74_37	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	MBNL1	HGNC	ENSG00000152601	tier1	-	-	35	0	0.00	23	31	57.41
PRKCE	0	genome.wustl.edu	37	2	46378274	46378300	+	In_Frame_Del	DEL	CCGACAATGAGGACGACCTATTTGAGT	CCGACAATGAGGACGACCTATTTGAGT	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	CCGACAATGAGGACGACCTATTTGAGT	CCGACAATGAGGACGACCTATTTGAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	2	46378274	46378300	CCGACAATGAGGACGACCTATTTGAGT	-	DEL	PRKCE	ENST00000306156	human	ensembl	74_37	+1	known	in_frame_del	c.1826_1852	p.DNEDDLFES610in_frame_del	1.000:0.054:1.000:1.000:1.000:1.000:1.000:0.814:1.000:1.000:1.000:1.000:1.000:0.979:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Prot_kin_PKC_delta,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd	-	no_errors	PRKCE	HGNC	ENSG00000171132	tier1			NA	NA	NA	NA	NA	NA
EQTN	0	genome.wustl.edu	37	9	27294315	27294315	+	Silent	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	9	27294315	27294315	G	A	SNP	EQTN	ENST00000380032	human	ensembl	74_37	-1	known	silent	c.288	p.N96	0.558	NULL	NULL	-	no_errors	EQTN	HGNC	ENSG00000120160	tier1	rs149742821	-	190	0	0.00	166	51	23.39
MYLK	0	genome.wustl.edu	37	3	123368043	123368044	+	Splice_Site	INS	-	-	G			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	3	123368043	123368044	-	G	INS	MYLK	ENST00000360304	human	ensembl	74_37	-1	known	splice_site_ins	c.4289-3_4289-2	e22-2	0.975:0.100	-	-	-	no_errors	MYLK	HGNC	ENSG00000065534	tier1			42	0	0.00	34	3	8.11
CHD6	0	genome.wustl.edu	37	20	40033612	40033612	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	20	40033612	40033612	G	C	SNP	CHD6	ENST00000373233	human	ensembl	74_37	-1	known	missense	c.7769	p.P2590R	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_BRK_domain,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD6	HGNC	ENSG00000124177	tier1	-	-	124	0	0.00	130	35	21.21
LAMB3	0	genome.wustl.edu	37	1	209791807	209791807	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	1	209791807	209791807	C	T	SNP	LAMB3	ENST00000356082	human	ensembl	74_37	-1	known	missense	c.2899	p.E967K	0.971	NULL	pfam_EGF_laminin,pfam_Laminin_N,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMB3	HGNC	ENSG00000196878	tier1	-	-	75	0	0.00	63	28	30.77
OR9A4	0	genome.wustl.edu	37	7	141618923	141618923	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	7	141618923	141618923	G	T	SNP	OR9A4	ENST00000548136	human	ensembl	74_37	+1	known	missense	c.248	p.G83V	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR9A4	HGNC	ENSG00000258083	tier1	-	-	137	0	0.00	121	78	39.20
ENSG00000267660	0	genome.wustl.edu	37	16	67978141	67978141	+	RNA	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	16	67978141	67978141	G	A	SNP	ENSG00000267660	ENST00000590594	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.083	-	-	-	no_errors	CTC-479C5.17	Clone_based_vega_gene	ENSG00000267660	tier1	-	-	47	0	0.00	5	35	87.50
WDR87	0	genome.wustl.edu	37	19	38379228	38379228	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	19	38379228	38379228	C	T	SNP	WDR87	ENST00000447313	human	ensembl	74_37	-1	known	missense	c.5083	p.E1695K	0.000	superfamily_ARM-type_fold	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,superfamily_Quinolinate_PRibosylTrfase_C,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR87	HGNC	ENSG00000171804	tier1	-	-	154	1	0.65	97	75	43.60
CYP4F2	0	genome.wustl.edu	37	19	16003201	16003201	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	19	16003201	16003201	C	T	SNP	CYP4F2	ENST00000221700	human	ensembl	74_37	-1	known	missense	c.443	p.R148H	0.996	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4F2	HGNC	ENSG00000186115	tier1	-	-	137	0	0.00	197	70	26.22
BPTF	0	genome.wustl.edu	37	17	65822267	65822269	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	17	65822267	65822269	GAG	-	DEL	BPTF	ENST00000321892	human	ensembl	74_37	+1	known	in_frame_del	c.427_429	p.E146in_frame_del	1.000:1.000:1.000	NULL	pfam_Bromodomain,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BPTF	HGNC	ENSG00000171634	tier1			17	0	0.00	20	2	9.09
ENSG00000237452	0	genome.wustl.edu	37	19	46265047	46265048	+	In_Frame_Ins	INS	-	-	TCCAGC			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	19	46265047	46265048	-	TCCAGC	INS	ENSG00000237452	ENST00000457052	human	ensembl	74_37	+1	putative	in_frame_ins	c.1356_1357	p.456in_frame_insSS	0.000:0.004	NULL	pfam_HMG_box_dom,pfam_bHLH_dom,superfamily_HMG_box_dom,superfamily_bHLH_dom,smart_HMG_box_dom,pfscan_bHLH_dom,pfscan_HMG_box_dom	-	no_errors	AC074212.3	Clone_based_vega_gene	ENSG00000237452	tier1			NA	NA	NA	NA	NA	NA
FGD5	0	genome.wustl.edu	37	3	14861642	14861642	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	3	14861642	14861642	C	-	DEL	FGD5	ENST00000285046	human	ensembl	74_37	+1	known	frame_shift_del	c.1064	p.S356fs	1.000	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD5	HGNC	ENSG00000154783	tier1			103	0	0.00	64	59	47.97
TMEM130	0	genome.wustl.edu	37	7	98445133	98445142	+	RNA	DEL	GTGTGTGTGT	GTGTGTGTGT	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	GTGTGTGTGT	GTGTGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	7	98445133	98445142	GTGTGTGTGT	-	DEL	TMEM130	ENST00000474857	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.006:0.003:0.003:0.001:0.000:0.000:0.001:0.001:0.002:0.001	-	-	-	no_errors	TMEM130	HGNC	ENSG00000166448	tier1			NA	NA	NA	NA	NA	NA
PCDHB15	0	genome.wustl.edu	37	5	140626730	140626730	+	Silent	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	5	140626730	140626730	G	A	SNP	PCDHB15	ENST00000231173	human	ensembl	74_37	+1	known	silent	c.1584	p.E528	0.735	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB15	HGNC	ENSG00000113248	tier1	-	-	349	0	0.00	243	219	47.30
ZBTB38	0	genome.wustl.edu	37	3	141164801	141164801	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	3	141164801	141164801	G	A	SNP	ZBTB38	ENST00000321464	human	ensembl	74_37	+1	known	missense	c.3574	p.E1192K	0.046	NULL	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB38	HGNC	ENSG00000177311	tier1	-	-	45	0	0.00	45	4	8.16
ENSG00000254592	0	genome.wustl.edu	37	11	3361794	3361794	+	RNA	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	11	3361794	3361794	G	A	SNP	ENSG00000254592	ENST00000526922	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.077	-	-	-	no_errors	RP5-1173A5.1	Clone_based_vega_gene	ENSG00000254592	tier1	-	-	12	0	0.00	6	11	64.71
MOCOS	0	genome.wustl.edu	37	18	33828939	33828939	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	18	33828939	33828939	G	T	SNP	MOCOS	ENST00000261326	human	ensembl	74_37	+1	known	missense	c.2015	p.R672L	1.000	pfam_MOSC_N,superfamily_Pyrv_Knase-like_insert_dom	pfam_MOSC_N,pfam_MoCF_Sase_C,pfam_Aminotrans_V/Cys_dSase,superfamily_PyrdxlP-dep_Trfase,superfamily_Pyrv_Knase-like_insert_dom	-	no_errors	MOCOS	HGNC	ENSG00000075643	tier1	-	-	47	0	0.00	43	4	8.51
MAN1B1	0	genome.wustl.edu	37	9	139998693	139998693	+	RNA	DEL	G	G	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	9	139998693	139998693	G	-	DEL	MAN1B1	ENST00000540391	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	MAN1B1	HGNC	ENSG00000177239	tier1			11	0	0.00	18	4	18.18
TBC1D29	0	genome.wustl.edu	37	17	28887198	28887198	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	17	28887198	28887198	G	-	DEL	TBC1D29	ENST00000579181	human	ensembl	74_37	+1	known	frame_shift_del	c.76	p.I27fs	0.001	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D29	HGNC	ENSG00000266733	tier1			160	0	0.00	223	23	9.35
SPTB	0	genome.wustl.edu	37	14	65253407	65253407	+	Silent	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	14	65253407	65253407	G	A	SNP	SPTB	ENST00000389722	human	ensembl	74_37	-1	known	silent	c.3276	p.S1092	0.991	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pirsf_Spectrin_bsu,pfam_Spectrin_repeat,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Pleckstrin_homology,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Pleckstrin_homology,prints_PH_dom-spectrin-type,pfscan_CH-domain,pfscan_Pleckstrin_homology	-	no_errors	SPTB	HGNC	ENSG00000070182	tier1	-	-	60	0	0.00	40	37	48.05
ADAMTSL3	0	genome.wustl.edu	37	15	84652065	84652065	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	15	84652065	84652065	A	C	SNP	ADAMTSL3	ENST00000286744	human	ensembl	74_37	+1	known	missense	c.3685	p.K1229Q	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTSL3	HGNC	ENSG00000156218	tier1	-	-	54	0	0.00	63	78	55.32
FNDC1	0	genome.wustl.edu	37	6	159650887	159650887	+	Silent	SNP	A	A	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	6	159650887	159650887	A	T	SNP	FNDC1	ENST00000297267	human	ensembl	74_37	+1	known	silent	c.1221	p.G407	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	FNDC1	HGNC	ENSG00000164694	tier1	-	-	130	0	0.00	108	66	37.93
ITIH6	0	genome.wustl.edu	37	X	54784926	54784926	+	Silent	SNP	A	A	G			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	X	54784926	54784926	A	G	SNP	ITIH6	ENST00000218436	human	ensembl	74_37	-1	known	silent	c.1581	p.D527	0.003	NULL	pfam_VIT,pfam_ITI_HC_C,pfam_VWF_A,smart_VIT,smart_VWF_A,pfscan_VWF_A	-	no_errors	ITIH6	HGNC	ENSG00000102313	tier1	-	-	13	0	0.00	17	14	45.16
SALL3	0	genome.wustl.edu	37	18	76755241	76755241	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	18	76755241	76755241	G	A	SNP	SALL3	ENST00000537592	human	ensembl	74_37	+1	known	missense	c.3250	p.V1084I	0.054	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL3	HGNC	ENSG00000256463	tier1	-	-	29	0	0.00	2	16	88.89
ALOX15	0	genome.wustl.edu	37	17	4541604	4541604	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	17	4541604	4541604	C	T	SNP	ALOX15	ENST00000545513	human	ensembl	74_37	-1	known	missense	c.781	p.V261M	0.997	pfam_LipOase_C,superfamily_LipOase_C	pfam_LipOase_C,pfam_PLAT/LH2_dom,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom,prints_LipOase_mml,prints_LipOase_C	-	no_errors	ALOX15	HGNC	ENSG00000161905	tier1	rs3892408	-	30	0	0.00	16	5	23.81
ENSG00000258437	0	genome.wustl.edu	37	14	91142581	91142582	+	RNA	INS	-	-	GAAATTAACT			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	14	91142581	91142582	-	GAAATTAACT	INS	ENSG00000258437	ENST00000554967	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	RP11-661G16.1	Clone_based_vega_gene	ENSG00000258437	tier1			NA	NA	NA	NA	NA	NA
FMO2	0	genome.wustl.edu	37	1	171178052	171178052	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	1	171178052	171178052	T	A	SNP	FMO2	ENST00000209929	human	ensembl	74_37	+1	known	missense	c.1376	p.L459Q	1.000	pfam_Flavin_mOase-like	pfam_Flavin_mOase-like,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,prints_Flavin_mOase,prints_Flavin_mOase_2,prints_Flavin_mOase_1,prints_Flavin_mOase_5	-	no_errors	FMO2	HGNC	ENSG00000094963	tier1	-	-	133	0	0.00	59	64	52.03
AKNAD1	0	genome.wustl.edu	37	1	109394841	109394842	+	In_Frame_Ins	INS	-	-	TAA			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	1	109394841	109394842	-	TAA	INS	AKNAD1	ENST00000370001	human	ensembl	74_37	-1	known	in_frame_ins	c.446_445	p.149in_frame_insI	0.324:0.324	NULL	pfam_TF_AT-hook	-	no_errors	AKNAD1	HGNC	ENSG00000162641	tier1			61	0	0.00	52	7	11.86
ATP10D	0	genome.wustl.edu	37	4	47563058	47563058	+	Silent	SNP	T	T	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	4	47563058	47563058	T	A	SNP	ATP10D	ENST00000273859	human	ensembl	74_37	+1	known	silent	c.2634	p.S878	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,tigrfam_ATPase_P-typ_Plipid-transp	pfam_ATPase_P-typ_transduc_dom_A,pfam_HAD-like_dom,superfamily_HAD-like_dom,superfamily_ATPase_P-typ_cyto_domN,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Plipid-transp,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP10D	HGNC	ENSG00000145246	tier1	-	-	143	0	0.00	119	72	37.50
GGH	0	genome.wustl.edu	37	8	63938818	63938818	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	8	63938818	63938818	G	A	SNP	GGH	ENST00000260118	human	ensembl	74_37	-1	known	missense	c.398	p.T133I	0.999	pfam_Peptidase_C26,pfam_GATASE	pfam_Peptidase_C26,pfam_GATASE	-	no_errors	GGH	HGNC	ENSG00000137563	tier1	-	-	61	0	0.00	43	31	41.89
ABCA2	0	genome.wustl.edu	37	9	139910007	139910007	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	9	139910007	139910007	C	T	SNP	ABCA2	ENST00000265662	human	ensembl	74_37	-1	known	missense	c.3556	p.D1186N	0.997	superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA2	HGNC	ENSG00000107331	tier1	-	-	126	0	0.00	85	107	55.73
JOSD1	0	genome.wustl.edu	37	22	39085422	39085422	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	22	39085422	39085422	G	A	SNP	JOSD1	ENST00000216039	human	ensembl	74_37	-1	known	missense	c.193	p.P65S	1.000	pfam_Josephin,pfscan_Josephin	pfam_Josephin,pfscan_Josephin	-	no_errors	JOSD1	HGNC	ENSG00000100221	tier1	-	-	129	0	0.00	16	57	78.08
ZCCHC6	0	genome.wustl.edu	37	9	88924912	88924912	+	Silent	SNP	A	A	G			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	9	88924912	88924912	A	G	SNP	ZCCHC6	ENST00000375963	human	ensembl	74_37	-1	known	silent	c.3399	p.L1133	0.956	NULL	pfam_PAP_assoc,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_U1,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC6	HGNC	ENSG00000083223	tier1	-	-	38	0	0.00	40	37	48.05
ANO4	0	genome.wustl.edu	37	12	101436131	101436131	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	12	101436131	101436131	A	T	SNP	ANO4	ENST00000392977	human	ensembl	74_37	+1	known	missense	c.1039	p.I347F	1.000	pfam_Anoctamin	pfam_Anoctamin	-	no_errors	ANO4	HGNC	ENSG00000151572	tier1	-	-	243	0	0.00	174	71	28.98
VPS45	0	genome.wustl.edu	37	1	150040903	150040903	+	RNA	SNP	T	T	C			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	1	150040903	150040903	T	C	SNP	VPS45	ENST00000478999	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.910	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631	tier1	-	-	23	0	0.00	9	11	55.00
FOXC1	0	genome.wustl.edu	37	6	1611233	1611233	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	6	1611233	1611233	G	A	SNP	FOXC1	ENST00000380874	human	ensembl	74_37	+1	known	missense	c.553	p.E185K	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXC1	HGNC	ENSG00000054598	tier1	-	-	64	0	0.00	30	45	59.21
KLRB1	0	genome.wustl.edu	37	12	9754110	9754110	+	Silent	SNP	C	C	G			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	12	9754110	9754110	C	G	SNP	KLRB1	ENST00000229402	human	ensembl	74_37	-1	known	silent	c.171	p.G57	0.339	superfamily_C-type_lectin_fold	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	KLRB1	HGNC	ENSG00000111796	tier1	-	-	42	0	0.00	25	31	55.36
ABCA5	0	genome.wustl.edu	37	17	67266815	67266815	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	17	67266815	67266815	T	A	SNP	ABCA5	ENST00000392677	human	ensembl	74_37	-1	known	missense	c.2972	p.Y991F	0.935	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA5	HGNC	ENSG00000154265	tier1	-	-	123	0	0.00	78	22	22.00
ENSG00000216089	0	genome.wustl.edu	37	4	160216901	160216908	+	RNA	DEL	GTGTGTGC	GTGTGTGC	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	GTGTGTGC	GTGTGTGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	4	160216901	160216908	GTGTGTGC	-	DEL	ENSG00000216089	ENST00000401270	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.002:0.000:0.000:0.000	-	-	-	no_errors	AC105316.1	Clone_based_ensembl_gene	ENSG00000216089	tier1			NA	NA	NA	NA	NA	NA
TCAIM	0	genome.wustl.edu	37	3	44402983	44402983	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	3	44402983	44402983	G	T	SNP	TCAIM	ENST00000342649	human	ensembl	74_37	+1	known	missense	c.292	p.D98Y	0.943	NULL	NULL	-	no_errors	TCAIM	HGNC	ENSG00000179152	tier1	-	-	75	0	0.00	32	44	57.89
LOC101927345	0	genome.wustl.edu	37	1	143380578	143380578	+	RNA	SNP	G	G	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	1	143380578	143380578	G	T	SNP	LOC101927345	ENST00000423394	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.425	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261	tier1	-	-	68	0	0.00	39	20	33.90
PNMA5	0	genome.wustl.edu	37	X	152159721	152159721	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	X	152159721	152159721	T	G	SNP	PNMA5	ENST00000361887	human	ensembl	74_37	-1	known	missense	c.422	p.Q141P	0.000	NULL	NULL	-	no_errors	PNMA5	HGNC	ENSG00000198883	tier1	-	-	84	0	0.00	62	32	34.04
BOLL	0	genome.wustl.edu	37	2	198621169	198621169	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	2	198621169	198621169	C	T	SNP	BOLL	ENST00000321801	human	ensembl	74_37	-1	known	missense	c.748	p.E250K	1.000	NULL	pfam_RRM_dom,pfam_RRM_3,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	BOLL	HGNC	ENSG00000152430	tier1	-	-	34	0	0.00	27	23	46.00
ENSG00000206195	0	genome.wustl.edu	37	22	16159315	16159324	+	RNA	DEL	TACAAATACT	TACAAATACT	-			TCGA-DX-A6BA-01A-11D-A307-09	TCGA-DX-A6BA-10A-01D-A307-09	TACAAATACT	TACAAATACT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	98730fa6-9c2d-4fd3-8862-ba7f78473395	971c456f-5be0-4a53-9780-492252d16f2e	22	16159315	16159324	TACAAATACT	-	DEL	ENSG00000206195	ENST00000383038	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.244:0.231:0.217:0.220:0.222:0.223:0.223:0.223:0.222:0.220	-	-	-	no_errors	AP000525.9	Clone_based_vega_gene	ENSG00000206195	tier1			NA	NA	NA	NA	NA	NA
