Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
HOXB6	0	genome.wustl.edu	37	17	46675273	46675273	+	Silent	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	17	46675273	46675273	G	A	SNP	HOXB6	ENST00000225648	human	ensembl	74_37	-1	known	silent	c.240	p.F80	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa,prints_Homeobox_antennapedia	-	no_errors	HOXB6	HGNC	ENSG00000108511	tier1	-	-	37	0	0.00	19	5	20.83
PIN1	0	genome.wustl.edu	37	19	9960266	9960266	+	RNA	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	9960266	9960266	C	T	SNP	PIN1	ENST00000380889	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.806	-	-	-	no_errors	PIN1	HGNC	ENSG00000127445	tier1	-	-	52	0	0.00	397	70	14.99
NOTCH2	0	genome.wustl.edu	37	1	120484302	120484302	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	120484302	120484302	C	A	SNP	NOTCH2	ENST00000256646	human	ensembl	74_37	-1	known	missense	c.2828	p.G943V	1.000	pirsf_Notch,pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pirsf_Notch,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	tier1	-	-	26	0	0.00	31	4	11.43
PPIL1	0	genome.wustl.edu	37	6	36823502	36823503	+	RNA	INS	-	-	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	6	36823502	36823503	-	A	INS	PPIL1	ENST00000483552	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PPIL1	HGNC	ENSG00000137168	tier1			9	0	0.00	10	8	44.44
YOD1	0	genome.wustl.edu	37	1	207222921	207222921	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	207222921	207222921	C	T	SNP	YOD1	ENST00000315927	human	ensembl	74_37	-1	known	missense	c.491	p.S164N	1.000	pfam_OTU,pfscan_OTU	pfam_OTU,pfscan_OTU	-	no_errors	YOD1	HGNC	ENSG00000180667	tier1	-	-	59	0	0.00	49	8	14.04
C9orf41	0	genome.wustl.edu	37	9	77611400	77611400	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	9	77611400	77611400	C	G	SNP	C9orf41	ENST00000376834	human	ensembl	74_37	-1	known	missense	c.987	p.W329C	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017	tier1	-	-	49	0	0.00	484	108	18.21
KRT81	0	genome.wustl.edu	37	12	52681806	52681806	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	52681806	52681806	G	A	SNP	KRT81	ENST00000327741	human	ensembl	74_37	-1	known	missense	c.862	p.R288C	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT81	HGNC	ENSG00000205426	tier1	rs144716678	-	54	0	0.00	55	9	14.06
C1orf86	0	genome.wustl.edu	37	1	2115954	2115954	+	RNA	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	2115954	2115954	G	A	SNP	C1orf86	ENST00000469733	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf86	HGNC	ENSG00000162585	tier1	-	-	33	0	0.00	32	4	11.11
PI4K2A	0	genome.wustl.edu	37	10	99361669	99361669	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	10	99361669	99361669	G	T	SNP	PI4K2A	ENST00000555577	human	ensembl	74_37	+1	known	missense	c.267	p.Q89H	1.000	NULL	pfam_PI3/4_kinase_cat_dom	-	no_errors	PI4K2A	HGNC	ENSG00000155252	tier1	-	-	33	0	0.00	35	4	10.26
FCRL3	0	genome.wustl.edu	37	1	157666077	157666077	+	Silent	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	157666077	157666077	G	A	SNP	FCRL3	ENST00000492769	human	ensembl	74_37	-1	known	silent	c.885	p.T295	0.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL3	HGNC	ENSG00000160856	tier1	-	-	43	0	0.00	31	13	29.55
ARPC5	0	genome.wustl.edu	37	1	183602270	183602270	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	183602270	183602270	G	T	SNP	ARPC5	ENST00000294742	human	ensembl	74_37	-1	known	missense	c.172	p.L58I	0.857	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	pfam_ARP2/3_p16_Arc,superfamily_ARP2/3_p16_Arc	-	no_errors	ARPC5	HGNC	ENSG00000162704	tier1	-	-	30	0	0.00	36	4	10.00
MT-RNR2	0	genome.wustl.edu	37	MT	3079	3079	+	RNA	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	MT	3079	3079	G	A	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	-	-	39	0	0.00	63	30	32.26
LOC100133077	0	genome.wustl.edu	37	9	140777367	140777367	+	RNA	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	9	140777367	140777367	G	A	SNP	LOC100133077	ENST00000371390	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-188C12.3	Clone_based_vega_gene	ENSG00000203987	tier1	-	-	55	0	0.00	45	7	13.46
CDH10	0	genome.wustl.edu	37	5	24511594	24511594	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	5	24511594	24511594	A	G	SNP	CDH10	ENST00000264463	human	ensembl	74_37	-1	known	missense	c.844	p.S282P	0.699	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH10	HGNC	ENSG00000040731	tier1	-	-	44	0	0.00	31	4	11.43
DMWD	0	genome.wustl.edu	37	19	46289542	46289544	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	CTC	CTC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	46289542	46289544	CTC	-	DEL	DMWD	ENST00000270223	human	ensembl	74_37	-1	known	in_frame_del	c.1212_1210	p.E404in_frame_del	1.000:1.000:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMWD	HGNC	ENSG00000185800	tier1			17	0	0.00	22	2	8.33
ENSG00000265194	0	genome.wustl.edu	37	9	21861902	21861903	+	RNA	INS	-	-	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	9	21861902	21861903	-	T	INS	ENSG00000265194	ENST00000581788	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-70L8.4	Clone_based_vega_gene	ENSG00000265194	tier1			18	0	0.00	23	3	11.54
NYAP2	0	genome.wustl.edu	37	2	226447163	226447163	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	2	226447163	226447163	G	A	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.1030	p.V344M	0.995	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460	tier1	-	-	23	0	0.00	23	5	15.15
RAP1B	0	genome.wustl.edu	37	12	69053162	69053162	+	RNA	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	69053162	69053162	C	T	SNP	RAP1B	ENST00000463493	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.995	-	-	-	no_errors	RAP1B	HGNC	ENSG00000127314	tier1	-	-	38	0	0.00	336	165	32.93
NDUFA7	0	genome.wustl.edu	37	19	8386199	8386199	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	8386199	8386199	G	T	SNP	NDUFA7	ENST00000301457	human	ensembl	74_37	-1	known	missense	c.44	p.A15E	0.759	pfam_NADH-UbQ_OxRdtase_B14.5a_su	pfam_NADH-UbQ_OxRdtase_B14.5a_su	-	no_errors	NDUFA7	HGNC	ENSG00000267855	tier1	-	-	25	0	0.00	18	8	30.77
ENSG00000271554	0	genome.wustl.edu	37	1	36475026	36475027	+	RNA	INS	-	-	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	36475026	36475027	-	A	INS	ENSG00000271554	ENST00000479395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.026:0.011	-	-	-	no_errors	RP4-665N4.8	Clone_based_vega_gene	ENSG00000271554	tier1			20	0	0.00	26	3	10.34
SLC12A6	0	genome.wustl.edu	37	15	34553189	34553189	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	15	34553189	34553189	G	T	SNP	SLC12A6	ENST00000558589	human	ensembl	74_37	-1	known	missense	c.322	p.L108I	1.000	tigrfam_Na/K/Cl_cotransptS	pfam_AA-permease/SLC12A_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS	-	no_errors	SLC12A6	HGNC	ENSG00000140199	tier1	-	-	23	0	0.00	15	3	16.67
OLFM2	0	genome.wustl.edu	37	19	9968504	9968504	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	9968504	9968504	C	G	SNP	OLFM2	ENST00000264833	human	ensembl	74_37	-1	known	missense	c.247	p.E83Q	1.000	pfam_Noelin-1	pfam_Olfac-like,pfam_Noelin-1,superfamily_Quinonprotein_ADH-like_supfam,smart_Olfac-like,pfscan_Olfac-like	-	no_errors	OLFM2	HGNC	ENSG00000105088	tier1	-	-	48	0	0.00	421	79	15.74
FBXO41	0	genome.wustl.edu	37	2	73490860	73490860	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	2	73490860	73490860	C	T	SNP	FBXO41	ENST00000295133	human	ensembl	74_37	-1	known	missense	c.2204	p.R735H	1.000	NULL	superfamily_F-box_dom	-	no_errors	FBXO41	HGNC	ENSG00000163013	tier1	-	-	27	0	0.00	26	4	13.33
RIMS1	0	genome.wustl.edu	37	6	73043350	73043350	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	6	73043350	73043350	G	T	SNP	RIMS1	ENST00000521978	human	ensembl	74_37	+1	known	missense	c.4178	p.R1393I	1.000	NULL	pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ,pfscan_Znf_FYVE-typ,pfscan_Znf_FYVE-rel	-	no_errors	RIMS1	HGNC	ENSG00000079841	tier1	-	-	32	0	0.00	24	7	22.58
PPIL2	0	genome.wustl.edu	37	22	22007679	22007679	+	RNA	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	22	22007679	22007679	C	T	SNP	PPIL2	ENST00000498589	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PPIL2	HGNC	ENSG00000100023	tier1	-	-	81	0	0.00	79	31	28.18
CCDC125	0	genome.wustl.edu	37	5	68616304	68616304	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	5	68616304	68616304	C	T	SNP	CCDC125	ENST00000396496	human	ensembl	74_37	-1	known	missense	c.64	p.D22N	1.000	NULL	NULL	-	no_errors	CCDC125	HGNC	ENSG00000183323	tier1	-	-	34	0	0.00	28	5	15.15
TIMP1	0	genome.wustl.edu	37	X	47445973	47445973	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	X	47445973	47445973	G	T	SNP	TIMP1	ENST00000218388	human	ensembl	74_37	+1	known	missense	c.507	p.L169F	1.000	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP	pfam_Prot_inh_TIMP,superfamily_TIMP-like_OB-fold,smart_Prot_inh_TIMP,pfscan_Netrin_domain	-	no_errors	TIMP1	HGNC	ENSG00000102265	tier1	-	-	23	0	0.00	23	4	14.81
NINL	0	genome.wustl.edu	37	20	25443278	25443279	+	RNA	INS	-	-	TTTGTTTTGT			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	20	25443278	25443279	-	TTTGTTTTGT	INS	NINL	ENST00000496509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.013	-	-	-	no_errors	NINL	HGNC	ENSG00000101004	tier1			NA	NA	NA	NA	NA	NA
SYT1	0	genome.wustl.edu	37	12	79611315	79611315	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	79611315	79611315	C	T	SNP	SYT1	ENST00000261205	human	ensembl	74_37	+1	known	missense	c.16	p.H6Y	1.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT1	HGNC	ENSG00000067715	tier1	-	-	22	0	0.00	35	13	27.08
TSC22D4	0	genome.wustl.edu	37	7	100075194	100075194	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	7	100075194	100075194	G	-	DEL	TSC22D4	ENST00000300181	human	ensembl	74_37	-1	known	frame_shift_del	c.468	p.T157fs	0.536	NULL	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D4	HGNC	ENSG00000166925	tier1			8	0	0.00	13	2	13.33
PTPRO	0	genome.wustl.edu	37	12	15704508	15704508	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	15704508	15704508	G	T	SNP	PTPRO	ENST00000281171	human	ensembl	74_37	+1	known	missense	c.2461	p.V821L	0.998	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRO	HGNC	ENSG00000151490	tier1	-	-	65	0	0.00	55	10	15.38
BAZ2B	0	genome.wustl.edu	37	2	160317644	160317645	+	RNA	INS	-	-	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	2	160317644	160317645	-	T	INS	BAZ2B	ENST00000483316	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005:0.155	-	-	-	no_errors	BAZ2B	HGNC	ENSG00000123636	tier1			11	0	0.00	19	2	9.52
SLC16A13	0	genome.wustl.edu	37	17	6943237	6943237	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	17	6943237	6943237	G	C	SNP	SLC16A13	ENST00000308027	human	ensembl	74_37	+1	known	missense	c.1237	p.D413H	0.005	NULL	pfam_MFS,pfam_Atg22-like,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A13	HGNC	ENSG00000174327	tier1	-	-	28	0	0.00	16	30	65.22
FLG2	0	genome.wustl.edu	37	1	152324804	152324804	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	1	152324804	152324804	G	A	SNP	FLG2	ENST00000388718	human	ensembl	74_37	-1	known	missense	c.5458	p.H1820Y	0.006	prints_Filaggrin	pfam_S100_Ca-bd_sub,pfscan_EF_hand_dom,prints_Filaggrin	-	no_errors	FLG2	HGNC	ENSG00000143520	tier1	-	-	74	0	0.00	83	23	21.70
PGA5	0	genome.wustl.edu	37	11	61017218	61017218	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	11	61017218	61017218	C	T	SNP	PGA5	ENST00000312403	human	ensembl	74_37	+1	known	missense	c.851	p.T284I	0.087	pfam_Aspartic_peptidase,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	pfam_Aspartic_peptidase,pfam_Aspartic_peptidase_N,superfamily_Peptidase_aspartic_dom,prints_Aspartic_peptidase	-	no_errors	PGA5	HGNC	ENSG00000256713	tier1	-	-	68	0	0.00	56	16	22.22
DCTN2	0	genome.wustl.edu	37	12	57932336	57932336	+	RNA	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	57932336	57932336	C	T	SNP	DCTN2	ENST00000551400	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DCTN2	HGNC	ENSG00000175203	tier1	-	-	49	0	0.00	165	57	25.68
TM9SF2	0	genome.wustl.edu	37	13	100192902	100192902	+	RNA	DEL	T	T	-			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	13	100192902	100192902	T	-	DEL	TM9SF2	ENST00000466555	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.045	-	-	-	no_errors	TM9SF2	HGNC	ENSG00000125304	tier1			15	0	0.00	18	2	10.00
EFTUD2	0	genome.wustl.edu	37	17	42962623	42962623	+	Splice_Site	SNP	C	C	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	17	42962623	42962623	C	T	SNP	EFTUD2	ENST00000426333	human	ensembl	74_37	-1	known	splice_site	c.350+1	e3+1	1.000	-	-	-	no_errors	EFTUD2	HGNC	ENSG00000108883	tier1	-	-	45	0	0.00	46	4	8.00
TMEM25	0	genome.wustl.edu	37	11	118403122	118403122	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	11	118403122	118403122	C	A	SNP	TMEM25	ENST00000533102	human	ensembl	74_37	+1	known	missense	c.328	p.Q110K	1.000	pfam_CD80_C2-set,pfscan_Ig-like_dom	pfam_CD80_C2-set,pfscan_Ig-like_dom	-	no_errors	TMEM25	HGNC	ENSG00000149582	tier1	-	-	29	0	0.00	28	4	12.50
TRHDE	0	genome.wustl.edu	37	12	73014948	73014948	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	12	73014948	73014948	T	C	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.2395	p.F799L	0.981	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	tier1	-	-	47	0	0.00	335	61	15.40
COL11A2	0	genome.wustl.edu	37	6	33144998	33144998	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	6	33144998	33144998	A	C	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.1976	p.L659R	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	tier1	-	-	58	0	0.00	50	11	18.03
CELP	0	genome.wustl.edu	37	9	135962585	135962586	+	RNA	INS	-	-	GCCCCATCGCCGCTACGGGTGATTTTTAGGCC			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	9	135962585	135962586	-	GCCCCATCGCCGCTACGGGTGATTTTTAGGCC	INS	CELP	ENST00000411440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.130:0.000	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	tier1			NA	NA	NA	NA	NA	NA
NKAIN3	0	genome.wustl.edu	37	8	63659614	63659614	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	8	63659614	63659614	G	A	SNP	NKAIN3	ENST00000328472	human	ensembl	74_37	+1	known	missense	c.397	p.V133I	0.974	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN3	HGNC	ENSG00000185942	tier1	-	-	43	0	0.00	40	10	20.00
GNA11	0	genome.wustl.edu	37	19	3121300	3121300	+	RNA	DEL	T	T	-			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	3121300	3121300	T	-	DEL	GNA11	ENST00000586180	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GNA11	HGNC	ENSG00000088256	tier1			14	0	0.00	22	4	15.38
SYNM	0	genome.wustl.edu	37	15	99674046	99674047	+	RNA	INS	-	-	TTCTGTTATAGCCTAAG			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	15	99674046	99674047	-	TTCTGTTATAGCCTAAG	INS	SYNM	ENST00000558420	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.001	-	-	-	no_errors	SYNM	HGNC	ENSG00000182253	tier1			NA	NA	NA	NA	NA	NA
SCN4A	0	genome.wustl.edu	37	17	62049824	62049824	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	17	62049824	62049824	T	C	SNP	SCN4A	ENST00000435607	human	ensembl	74_37	-1	known	missense	c.280	p.I94V	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,pfscan_IQ_motif_EF-hand-BS,prints_Na_channel_a4su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN4A	HGNC	ENSG00000007314	tier1	-	-	51	0	0.00	56	10	15.15
ASPN	0	genome.wustl.edu	37	9	95237024	95237025	+	In_Frame_Ins	INS	-	-	TCA			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	9	95237024	95237025	-	TCA	INS	ASPN	ENST00000375544	human	ensembl	74_37	-1	known	in_frame_ins	c.156_155	p.52in_frame_insD	0.335:0.340	pirsf_SLRP_I_decor/aspor/byglycan	pfam_Leu-rich_rpt,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pirsf_SLRP_I_decor/aspor/byglycan	-	no_errors	ASPN	HGNC	ENSG00000106819	tier1			40	0	0.00	45	10	18.18
EMC8	0	genome.wustl.edu	37	16	85813472	85813472	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	16	85813472	85813472	C	A	SNP	EMC8	ENST00000253457	human	ensembl	74_37	-1	known	missense	c.475	p.D159Y	1.000	pfam_UPF0172	pfam_UPF0172	-	no_errors	EMC8	HGNC	ENSG00000131148	tier1	-	-	22	0	0.00	22	4	15.38
C9orf41	0	genome.wustl.edu	37	9	77611441	77611441	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	9	77611441	77611441	C	G	SNP	C9orf41	ENST00000376834	human	ensembl	74_37	-1	known	missense	c.946	p.D316H	1.000	pfam_N2227	pfam_N2227	-	no_errors	C9orf41	HGNC	ENSG00000156017	tier1	-	-	54	0	0.00	454	87	16.08
MARCH2	0	genome.wustl.edu	37	19	8495621	8495621	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	8495621	8495621	T	A	SNP	MARCH2	ENST00000215555	human	ensembl	74_37	+1	known	missense	c.452	p.L151Q	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH,pfscan_Znf_RING	-	no_errors	MARCH2	HGNC	ENSG00000099785	tier1	-	-	44	0	0.00	37	15	28.85
KIAA1109	0	genome.wustl.edu	37	4	123280877	123280877	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	4	123280877	123280877	G	T	SNP	KIAA1109	ENST00000264501	human	ensembl	74_37	+1	known	missense	c.14801	p.R4934I	1.000	pfam_Fragile_site-assoc_C	pfam_Fragile_site-assoc_C	-	no_errors	KIAA1109	HGNC	ENSG00000138688	tier1	-	-	36	0	0.00	40	4	9.09
VSIG10L	0	genome.wustl.edu	37	19	51844520	51844520	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	19	51844520	51844520	C	G	SNP	VSIG10L	ENST00000335624	human	ensembl	74_37	-1	novel	missense	c.782	p.R261P	0.000	smart_Ig_sub	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	VSIG10L	HGNC	ENSG00000186806	tier1	-	-	26	0	0.00	37	10	21.28
KIAA1755	0	genome.wustl.edu	37	20	36859721	36859721	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	20	36859721	36859721	C	A	SNP	KIAA1755	ENST00000279024	human	ensembl	74_37	-1	known	missense	c.1754	p.R585L	0.131	superfamily_CRAL-TRIO_dom	superfamily_CRAL-TRIO_dom	-	no_errors	KIAA1755	HGNC	ENSG00000149633	tier1	-	-	37	0	0.00	40	4	9.09
BBS9	0	genome.wustl.edu	37	7	33303966	33303966	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	7	33303966	33303966	G	A	SNP	BBS9	ENST00000242067	human	ensembl	74_37	+1	known	missense	c.682	p.G228S	1.000	NULL	NULL	-	no_errors	BBS9	HGNC	ENSG00000122507	tier1	-	-	144	0	0.00	164	43	20.77
RN7SKP221	0	genome.wustl.edu	37	22	21899852	21899852	+	RNA	SNP	C	C	A			TCGA-DX-A6BE-01A-41D-A32I-09	TCGA-DX-A6BE-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	406790e5-4047-4f74-86ed-6ce0c93069a3	33cfaab4-e272-46bf-9cf9-18bc3880eddf	22	21899852	21899852	C	A	SNP	RN7SKP221	ENST00000410420	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.314	-	-	-	no_errors	RN7SKP221	HGNC	ENSG00000222352	tier1	-	-	38	0	0.00	32	4	11.11
