Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
VWF	0	genome.wustl.edu	37	12	6153547	6153547	+	Silent	SNP	T	T	C			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	12	6153547	6153547	T	C	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	silent	c.2352	p.E784	0.229	pirsf_VWF,superfamily_TIL_dom	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	tier1	-	-	84	0	0.00	137	13	8.67
COL18A1	0	genome.wustl.edu	37	21	46908330	46908330	+	Splice_Site	SNP	A	A	G			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	21	46908330	46908330	A	G	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	splice_site	c.3142-2	e17-2	0.936	-	-	-	no_errors	COL18A1	HGNC	ENSG00000182871	tier1	-	-	79	0	0.00	67	7	9.46
PLCG1	0	genome.wustl.edu	37	20	39793948	39793948	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	20	39793948	39793948	A	T	SNP	PLCG1	ENST00000244007	human	ensembl	74_37	+1	known	missense	c.1450	p.N484Y	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_dom,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_dom,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_dom,pirsf_PLC-gamma,pfscan_EF_hand_dom,pfscan_C2_dom,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	tier1	-	-	112	0	0.00	150	22	12.79
RNF38	0	genome.wustl.edu	37	9	36390530	36390530	+	Silent	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	9	36390530	36390530	G	A	SNP	RNF38	ENST00000259605	human	ensembl	74_37	-1	known	silent	c.96	p.F32	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF38	HGNC	ENSG00000137075	tier1	-	-	81	0	0.00	80	13	13.83
MYL6	0	genome.wustl.edu	37	12	56552164	56552164	+	RNA	SNP	C	C	G			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	12	56552164	56552164	C	G	SNP	MYL6	ENST00000550639	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.992	-	-	-	no_errors	MYL6	HGNC	ENSG00000092841	tier1	-	-	95	0	0.00	85	21	19.81
NAA10	0	genome.wustl.edu	37	X	153197421	153197421	+	RNA	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	X	153197421	153197421	G	A	SNP	NAA10	ENST00000393710	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NAA10	HGNC	ENSG00000102030	tier1	-	-	145	0	0.00	136	33	19.53
RP1L1	0	genome.wustl.edu	37	8	10467754	10467754	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	8	10467754	10467754	G	A	SNP	RP1L1	ENST00000382483	human	ensembl	74_37	-1	known	missense	c.3854	p.A1285V	0.000	NULL	pfam_Doublecortin_dom,smart_Doublecortin_dom,pfscan_Doublecortin_dom	-	no_errors	RP1L1	HGNC	ENSG00000183638	tier1	rs201382029	-	238	1	0.42	217	20	8.44
CSH2	0	genome.wustl.edu	37	17	61950102	61950102	+	Splice_Site	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	17	61950102	61950102	C	T	SNP	CSH2	ENST00000392886	human	ensembl	74_37	-1	known	splice_site	c.292-1	e4-1	0.999	-	-	-	no_errors	CSH2	HGNC	ENSG00000213218	tier1	-	-	45	0	0.00	65	8	10.96
TRIP6	0	genome.wustl.edu	37	7	100470808	100470808	+	Silent	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	7	100470808	100470808	G	A	SNP	TRIP6	ENST00000200457	human	ensembl	74_37	+1	known	silent	c.1314	p.L438	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	TRIP6	HGNC	ENSG00000087077	tier1	-	-	98	0	0.00	81	20	19.80
RNF38	0	genome.wustl.edu	37	9	36390529	36390529	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	9	36390529	36390529	G	A	SNP	RNF38	ENST00000259605	human	ensembl	74_37	-1	known	missense	c.97	p.P33S	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF38	HGNC	ENSG00000137075	tier1	-	-	81	0	0.00	80	13	13.98
APEH	0	genome.wustl.edu	37	3	49714115	49714115	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	3	49714115	49714115	G	A	SNP	APEH	ENST00000296456	human	ensembl	74_37	+1	known	missense	c.818	p.R273H	1.000	NULL	pfam_Peptidase_S9,pfam_AB_hydrolase_1,pfam_Dienelactn_hydro	-	no_errors	APEH	HGNC	ENSG00000164062	tier1	-	-	316	0	0.00	335	31	8.47
PKHD1L1	0	genome.wustl.edu	37	8	110487369	110487369	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	8	110487369	110487369	G	T	SNP	PKHD1L1	ENST00000378402	human	ensembl	74_37	+1	known	missense	c.8628	p.Q2876H	0.999	NULL	pfam_IPT,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	tier1	-	-	78	0	0.00	107	16	13.01
DOCK8	0	genome.wustl.edu	37	9	371527	371527	+	Silent	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	9	371527	371527	G	A	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	silent	c.1968	p.Q656	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	tier1	-	-	66	0	0.00	58	18	23.68
SIM1	0	genome.wustl.edu	37	6	100838449	100838449	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	6	100838449	100838449	T	G	SNP	SIM1	ENST00000262901	human	ensembl	74_37	-1	known	missense	c.2089	p.N697H	1.000	NULL	pfam_SIM_C,pfam_PAS_fold_3,pfam_PAS_fold,pfam_bHLH_dom,superfamily_PAS,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,smart_PAC,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	SIM1	HGNC	ENSG00000112246	tier1	-	-	84	0	0.00	99	20	16.81
LOC101927091	0	genome.wustl.edu	37	15	94304116	94304116	+	RNA	DEL	T	T	-			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	15	94304116	94304116	T	-	DEL	LOC101927091	ENST00000557481	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTD-3049M7.1	Clone_based_vega_gene	ENSG00000258754	tier1			43	0	0.00	53	5	8.62
ZNF467	0	genome.wustl.edu	37	7	149461818	149461818	+	Silent	SNP	G	G	C			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	7	149461818	149461818	G	C	SNP	ZNF467	ENST00000302017	human	ensembl	74_37	-1	known	silent	c.1773	p.P591	0.004	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF467	HGNC	ENSG00000181444	tier1	-	-	64	0	0.00	73	8	9.88
DOCK8	0	genome.wustl.edu	37	9	371452	371452	+	Silent	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	9	371452	371452	G	A	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	silent	c.1893	p.V631	0.998	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	tier1	-	-	55	0	0.00	53	13	19.70
BRIX1	0	genome.wustl.edu	37	5	34925328	34925329	+	Splice_Site	INS	-	-	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	5	34925328	34925329	-	A	INS	BRIX1	ENST00000336767	human	ensembl	74_37	+1	known	splice_site_ins	c.793-3_793-2	e10-2	0.213:0.997	-	-	-	no_errors	BRIX1	HGNC	ENSG00000113460	tier1			32	0	0.00	20	5	20.00
EGFLAM	0	genome.wustl.edu	37	5	38431329	38431329	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	5	38431329	38431329	G	A	SNP	EGFLAM	ENST00000354891	human	ensembl	74_37	+1	known	missense	c.2105	p.R702H	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Fibronectin_type3,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3,pfscan_Laminin_G	-	no_errors	EGFLAM	HGNC	ENSG00000164318	tier1	-	-	171	0	0.00	177	29	14.08
PRKACA	0	genome.wustl.edu	37	19	14204564	14204564	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	19	14204564	14204564	A	T	SNP	PRKACA	ENST00000308677	human	ensembl	74_37	-1	known	missense	c.806	p.L269Q	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACA	HGNC	ENSG00000072062	tier1	-	-	107	0	0.00	114	20	14.93
FBXL16	0	genome.wustl.edu	37	16	747263	747265	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	16	747263	747265	TGG	-	DEL	FBXL16	ENST00000324361	human	ensembl	74_37	-1	known	in_frame_del	c.143_141	p.CQ47in_frame_delW	1.000:1.000:1.000	NULL	superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL16	HGNC	ENSG00000127585	tier1			9	0	0.00	7	5	41.67
OR10H1	0	genome.wustl.edu	37	19	15918231	15918231	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	19	15918231	15918231	G	A	SNP	OR10H1	ENST00000334920	human	ensembl	74_37	-1	known	missense	c.617	p.T206M	0.006	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10H1	HGNC	ENSG00000186723	tier1	-	-	370	0	0.00	318	112	26.05
ZNF716	0	genome.wustl.edu	37	7	57528451	57528451	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	7	57528451	57528451	A	T	SNP	ZNF716	ENST00000420713	human	ensembl	74_37	+1	known	missense	c.284	p.Q95L	0.458	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF716	HGNC	ENSG00000182111	tier1	-	-	135	0	0.00	120	27	18.37
ACTN4	0	genome.wustl.edu	37	19	39214576	39214576	+	Splice_Site	SNP	G	G	C			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	19	39214576	39214576	G	C	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	splice_site	c.1552-1	e14-1	1.000	-	-	-	no_errors	ACTN4	HGNC	ENSG00000130402	tier1	-	-	112	1	0.88	137	48	25.95
ENSG00000167765	0	genome.wustl.edu	37	19	52097256	52097256	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	19	52097256	52097256	T	C	SNP	ENSG00000167765	ENST00000301439	human	ensembl	74_37	-1	known	missense	c.319	p.I107V	0.000	NULL	NULL	-	no_errors	AC018755.1	Clone_based_ensembl_gene	ENSG00000167765	tier1	-	-	156	0	0.00	161	18	10.06
CLCN1	0	genome.wustl.edu	37	7	143048760	143048760	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	7	143048760	143048760	C	T	SNP	CLCN1	ENST00000343257	human	ensembl	74_37	+1	known	missense	c.2669	p.T890M	0.835	NULL	pfam_Cl-channel_volt-gated,pfam_CBS_dom,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated,prints_Cl_channel-1	-	no_errors	CLCN1	HGNC	ENSG00000188037	tier1	-	-	83	0	0.00	90	8	8.16
SPHKAP	0	genome.wustl.edu	37	2	228883090	228883090	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	2	228883090	228883090	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.2480	p.T827K	0.003	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	tier1	-	-	196	0	0.00	122	33	21.29
ENSG00000263120	0	genome.wustl.edu	37	17	55062464	55062465	+	RNA	INS	-	-	GAAAA			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	17	55062464	55062465	-	GAAAA	INS	ENSG00000263120	ENST00000572877	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	RP5-1107A17.4	Clone_based_vega_gene	ENSG00000263120	tier1			NA	NA	NA	NA	NA	NA
KRT32	0	genome.wustl.edu	37	17	39623131	39623131	+	Silent	SNP	G	G	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	17	39623131	39623131	G	T	SNP	KRT32	ENST00000225899	human	ensembl	74_37	-1	known	silent	c.447	p.T149	0.974	pfam_IF	pfam_IF,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT32	HGNC	ENSG00000108759	tier1	-	-	167	0	0.00	131	35	21.08
ARHGAP27	0	genome.wustl.edu	37	17	43507621	43507621	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	17	43507621	43507621	C	T	SNP	ARHGAP27	ENST00000428638	human	ensembl	74_37	-1	known	missense	c.25	p.V9M	1.000	superfamily_SH3_domain	pfam_RhoGAP_dom,pfam_WW_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP27	HGNC	ENSG00000159314	tier1	-	-	140	0	0.00	167	23	12.11
MEN1	0	genome.wustl.edu	37	11	64572627	64572627	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	11	64572627	64572627	A	-	DEL	MEN1	ENST00000337652	human	ensembl	74_37	-1	known	frame_shift_del	c.1244	p.F415fs	1.000	pfam_Menin	pfam_Menin	-	no_errors	MEN1	HGNC	ENSG00000133895	tier1			105	0	0.00	51	20	28.17
FAM184B	0	genome.wustl.edu	37	4	17706653	17706653	+	Silent	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	4	17706653	17706653	G	A	SNP	FAM184B	ENST00000265018	human	ensembl	74_37	-1	known	silent	c.1347	p.S449	0.000	NULL	NULL	-	no_errors	FAM184B	HGNC	ENSG00000047662	tier1	-	-	188	0	0.00	218	44	16.79
GEMIN4	0	genome.wustl.edu	37	17	650858	650858	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	17	650858	650858	T	G	SNP	GEMIN4	ENST00000319004	human	ensembl	74_37	-1	known	missense	c.425	p.E142A	0.128	NULL	NULL	-	no_errors	GEMIN4	HGNC	ENSG00000179409	tier1	-	-	128	0	0.00	97	26	21.14
LAMC3	0	genome.wustl.edu	37	9	133914292	133914292	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	9	133914292	133914292	C	T	SNP	LAMC3	ENST00000361069	human	ensembl	74_37	+1	known	missense	c.1018	p.R340W	0.990	pfam_EGF_laminin,smart_EG-like_dom,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	tier1	rs146887458	-	42	0	0.00	61	13	17.57
FAM47C	0	genome.wustl.edu	37	X	37027354	37027354	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	X	37027354	37027354	G	A	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.871	p.V291I	0.001	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	tier1	-	-	274	1	0.36	282	58	17.01
MUC19	0	genome.wustl.edu	37	12	40821225	40821225	+	Silent	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	12	40821225	40821225	C	T	SNP	MUC19	ENST00000454784	human	ensembl	74_37	+1	novel	silent	c.447	p.S149	0.973	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWC_out,smart_VWF_type-D,smart_Unchr_dom_Cys-rich	-	no_errors	MUC19	HGNC	ENSG00000205592	tier1	-	-	143	1	0.69	112	22	16.42
PTP4A2	0	genome.wustl.edu	37	1	32385072	32385072	+	RNA	DEL	A	A	-			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	1	32385072	32385072	A	-	DEL	PTP4A2	ENST00000494444	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.787	-	-	-	no_errors	PTP4A2	HGNC	ENSG00000184007	tier1			16	0	0.00	18	3	14.29
BCORL1	0	genome.wustl.edu	37	X	129147217	129147217	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	X	129147217	129147217	G	A	SNP	BCORL1	ENST00000303743	human	ensembl	74_37	+1	known	missense	c.469	p.A157T	0.042	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCORL1	HGNC	ENSG00000085185	tier1	rs147775035	-	110	0	0.00	127	38	22.89
RNF38	0	genome.wustl.edu	37	9	36390607	36390607	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	9	36390607	36390607	G	A	SNP	RNF38	ENST00000259605	human	ensembl	74_37	-1	known	missense	c.19	p.P7S	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF38	HGNC	ENSG00000137075	tier1	-	-	62	0	0.00	60	9	13.04
RAB11FIP5	0	genome.wustl.edu	37	2	73316055	73316055	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	2	73316055	73316055	G	C	SNP	RAB11FIP5	ENST00000258098	human	ensembl	74_37	-1	known	missense	c.820	p.L274V	1.000	NULL	pfam_Rab-bd_FIP-RBD,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	RAB11FIP5	HGNC	ENSG00000135631	tier1	-	-	107	0	0.00	105	14	11.76
TREML4	0	genome.wustl.edu	37	6	41197265	41197265	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	6	41197265	41197265	C	G	SNP	TREML4	ENST00000341495	human	ensembl	74_37	+1	known	missense	c.401	p.T134S	0.000	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	TREML4	HGNC	ENSG00000188056	tier1	-	-	209	0	0.00	196	55	21.91
SYCN	0	genome.wustl.edu	37	19	39694754	39694754	+	Silent	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	19	39694754	39694754	G	A	SNP	SYCN	ENST00000318438	human	ensembl	74_37	-1	known	silent	c.141	p.P47	1.000	NULL	NULL	-	no_errors	SYCN	HGNC	ENSG00000179751	tier1	-	-	142	0	0.00	390	83	17.47
ACTN4	0	genome.wustl.edu	37	19	39214715	39214715	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	19	39214715	39214715	G	C	SNP	ACTN4	ENST00000252699	human	ensembl	74_37	+1	known	missense	c.1690	p.E564Q	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_dom,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	ACTN4	HGNC	ENSG00000130402	tier1	-	-	168	0	0.00	187	95	33.69
FOXP3	0	genome.wustl.edu	37	X	49114812	49114812	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	X	49114812	49114812	G	A	SNP	FOXP3	ENST00000376207	human	ensembl	74_37	-1	known	nonsense	c.151	p.R51*	0.233	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXP3	HGNC	ENSG00000049768	tier1	-	-	100	0	0.00	131	17	11.49
C16orf78	0	genome.wustl.edu	37	16	49412407	49412407	+	Silent	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	16	49412407	49412407	C	T	SNP	C16orf78	ENST00000299191	human	ensembl	74_37	+1	known	silent	c.297	p.D99	0.000	NULL	NULL	-	no_errors	C16orf78	HGNC	ENSG00000166152	tier1	rs143423404	-	130	0	0.00	145	26	15.20
ENSG00000253629	0	genome.wustl.edu	37	8	102698815	102698815	+	RNA	SNP	C	C	G			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	8	102698815	102698815	C	G	SNP	ENSG00000253629	ENST00000518749	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	KB-1107E3.1	Clone_based_vega_gene	ENSG00000253629	tier1	-	-	48	0	0.00	48	12	20.00
TBCB	0	genome.wustl.edu	37	19	36606379	36606380	+	RNA	INS	-	-	CAG			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	19	36606379	36606380	-	CAG	INS	TBCB	ENST00000593075	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.079:0.075	-	-	-	no_errors	TBCB	HGNC	ENSG00000105254	tier1			16	0	0.00	32	8	20.00
TEKT3	0	genome.wustl.edu	37	17	15207230	15207230	+	RNA	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	17	15207230	15207230	C	T	SNP	TEKT3	ENST00000462175	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	TEKT3	HGNC	ENSG00000125409	tier1	-	-	81	0	0.00	104	12	10.26
HERC2	0	genome.wustl.edu	37	15	28359945	28359945	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	15	28359945	28359945	C	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	missense	c.13726	p.D4576N	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	tier1	-	-	112	0	0.00	108	28	20.59
FGD4	0	genome.wustl.edu	37	12	32751500	32751500	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	12	32751500	32751500	C	T	SNP	FGD4	ENST00000427716	human	ensembl	74_37	+1	known	nonsense	c.670	p.R224*	0.988	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Znf_FYVE,superfamily_DH-domain,superfamily_Znf_FYVE_PHD,smart_DH-domain,smart_Pleckstrin_homology,smart_Znf_FYVE,pfscan_Pleckstrin_homology,pfscan_Znf_FYVE-rel,pfscan_DH-domain	-	no_errors	FGD4	HGNC	ENSG00000139132	tier1	rs118203972	-	48	0	0.00	34	10	22.73
MAP3K15	0	genome.wustl.edu	37	X	19398277	19398277	+	Silent	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	X	19398277	19398277	C	T	SNP	MAP3K15	ENST00000338883	human	ensembl	74_37	-1	known	silent	c.2550	p.P850	0.241	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K15	HGNC	ENSG00000180815	tier1	-	-	74	0	0.00	107	15	12.30
CIDEA	0	genome.wustl.edu	37	18	12254562	12254563	+	Frame_Shift_Ins	INS	-	-	CCGCGCACACACCCAT			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	18	12254562	12254563	-	CCGCGCACACACCCAT	INS	CIDEA	ENST00000522713	human	ensembl	74_37	+1	known	frame_shift_ins	c.180_181	p.H64fs	0.077:0.122	NULL	NULL	-	no_errors	CIDEA	HGNC	ENSG00000176194	tier1			NA	NA	NA	NA	NA	NA
NOP14	0	genome.wustl.edu	37	4	2958424	2958424	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	4	2958424	2958424	C	T	SNP	NOP14	ENST00000416614	human	ensembl	74_37	-1	known	missense	c.445	p.D149N	1.000	pfam_Nop14	pfam_Nop14	-	no_errors	NOP14	HGNC	ENSG00000087269	tier1	rs149998901	-	49	0	0.00	55	8	12.70
XKR7	0	genome.wustl.edu	37	20	30584994	30584994	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	20	30584994	30584994	C	T	SNP	XKR7	ENST00000562532	human	ensembl	74_37	+1	known	missense	c.1474	p.R492C	0.996	NULL	pfam_Transport_prot_XK	-	no_errors	XKR7	HGNC	ENSG00000260903	tier1	-	-	72	0	0.00	71	18	19.78
DOCK8	0	genome.wustl.edu	37	9	371546	371546	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	9	371546	371546	G	A	SNP	DOCK8	ENST00000453981	human	ensembl	74_37	+1	known	missense	c.1987	p.E663K	1.000	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK8	HGNC	ENSG00000107099	tier1	-	-	70	0	0.00	55	20	26.67
MCF2L2	0	genome.wustl.edu	37	3	182937682	182937682	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	3	182937682	182937682	T	A	SNP	MCF2L2	ENST00000328913	human	ensembl	74_37	-1	known	missense	c.2332	p.M778L	0.638	superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2L2	HGNC	ENSG00000053524	tier1	-	-	55	0	0.00	51	10	16.39
HAUS6	0	genome.wustl.edu	37	9	19087122	19087122	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	9	19087122	19087122	G	C	SNP	HAUS6	ENST00000380502	human	ensembl	74_37	-1	known	missense	c.617	p.S206C	0.993	NULL	NULL	-	no_errors	HAUS6	HGNC	ENSG00000147874	tier1	-	-	120	0	0.00	106	21	16.54
CPNE1	0	genome.wustl.edu	37	20	34220147	34220147	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	20	34220147	34220147	G	A	SNP	CPNE1	ENST00000317677	human	ensembl	74_37	-1	known	nonsense	c.409	p.Q137*	1.000	superfamily_C2_dom	pfam_Copine,pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,smart_VWF_A,pfscan_C2_dom	-	no_errors	CPNE1	HGNC	ENSG00000214078	tier1	-	-	132	0	0.00	133	27	16.77
LRBA	0	genome.wustl.edu	37	4	151502697	151502698	+	RNA	INS	-	-	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	4	151502697	151502698	-	A	INS	LRBA	ENST00000503716	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	LRBA	HGNC	ENSG00000198589	tier1			26	0	0.00	24	4	14.29
SCAND3	0	genome.wustl.edu	37	6	28543143	28543143	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	6	28543143	28543143	C	G	SNP	SCAND3	ENST00000452236	human	ensembl	74_37	-1	known	missense	c.1339	p.V447L	0.999	pfam_Integrase_cat-core,superfamily_RNaseH-like_dom,pfscan_Integrase_cat-core	pfam_Tscrpt_reg_SCAN,pfam_Integrase_cat-core,pfam_HATC_dom_C,superfamily_Retrov_capsid_C,superfamily_RNaseH-like_dom,smart_Tscrpt_reg_SCAN,pfscan_Integrase_cat-core,pfscan_Tscrpt_reg_SCAN	-	no_errors	SCAND3	HGNC	ENSG00000232040	tier1	-	-	80	0	0.00	67	6	8.22
PCLO	0	genome.wustl.edu	37	7	82585951	82585951	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A6BK-01A-11D-A307-09	TCGA-DX-A6BK-10A-01D-A307-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1f9880e9-9009-4ed4-848d-e09740417390	aa4de766-b1c9-4fc1-8163-69c7643ff109	7	82585951	82585951	C	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	nonsense	c.4318	p.E1440*	0.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	200	0	0.00	197	18	8.37
