Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NYAP2	0	genome.wustl.edu	37	2	226447647	226447647	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	2	226447647	226447647	G	A	SNP	NYAP2	ENST00000272907	human	ensembl	74_37	+1	known	missense	c.1514	p.R505Q	0.991	NULL	NULL	-	no_errors	NYAP2	HGNC	ENSG00000144460	tier1	-	-	36	0	0.00	41	19	31.67
KRTAP2-2	0	genome.wustl.edu	37	17	39211139	39211140	+	In_Frame_Ins	INS	-	-	GCAGGGGGGCCGGCA			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	17	39211139	39211140	-	GCAGGGGGGCCGGCA	INS	KRTAP2-2	ENST00000542910	human	ensembl	74_37	-1	known	in_frame_ins	c.325_324	p.108in_frame_insCRPPC	1.000:1.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP2-2	HGNC	ENSG00000214518	tier1			NA	NA	NA	NA	NA	NA
LOC100190940	0	genome.wustl.edu	37	12	130521234	130521235	+	RNA	INS	-	-	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	12	130521234	130521235	-	A	INS	LOC100190940	ENST00000291374	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.029:0.046	-	-	-	no_errors	RP11-474D1.3	Clone_based_vega_gene	ENSG00000214039	tier1			8	0	0.00	22	3	12.00
KHDRBS1	0	genome.wustl.edu	37	1	32508537	32508537	+	RNA	DEL	A	A	-			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	1	32508537	32508537	A	-	DEL	KHDRBS1	ENST00000307714	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.903	-	-	-	no_errors	KHDRBS1	HGNC	ENSG00000121774	tier1			9	0	0.00	34	7	17.07
NRXN1	0	genome.wustl.edu	37	2	50850699	50850699	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	2	50850699	50850699	A	C	SNP	NRXN1	ENST00000402717	human	ensembl	74_37	-1	known	missense	c.887	p.L296W	1.000	superfamily_ConA-like_lec_gl_sf,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	tier1	-	-	41	0	0.00	42	14	25.00
ADAM33	0	genome.wustl.edu	37	20	3650540	3650541	+	RNA	INS	-	-	CACCACC			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	20	3650540	3650541	-	CACCACC	INS	ADAM33	ENST00000483362	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ADAM33	HGNC	ENSG00000149451	tier1			NA	NA	NA	NA	NA	NA
ZBTB11	0	genome.wustl.edu	37	3	101390763	101390763	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	3	101390763	101390763	G	T	SNP	ZBTB11	ENST00000461821	human	ensembl	74_37	-1	putative	missense	c.605	p.A202D	0.000	NULL	NULL	-	no_errors	ZBTB11	HGNC	ENSG00000066422	tier1	-	-	36	0	0.00	34	4	10.53
HSF2BP	0	genome.wustl.edu	37	21	44949799	44949799	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	21	44949799	44949799	C	A	SNP	HSF2BP	ENST00000291560	human	ensembl	74_37	-1	known	missense	c.840	p.Q280H	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HSF2BP	HGNC	ENSG00000160207	tier1	-	-	53	0	0.00	91	25	21.55
ALPL	0	genome.wustl.edu	37	1	21890674	21890674	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	1	21890674	21890674	G	A	SNP	ALPL	ENST00000374832	human	ensembl	74_37	+1	known	missense	c.613	p.A205T	1.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPL	HGNC	ENSG00000162551	tier1	-	-	66	0	0.00	69	22	23.91
ANO6	0	genome.wustl.edu	37	12	45741992	45741992	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	12	45741992	45741992	A	G	SNP	ANO6	ENST00000425752	human	ensembl	74_37	+1	known	missense	c.527	p.K176R	1.000	NULL	pfam_Anoctamin	-	no_errors	ANO6	HGNC	ENSG00000177119	tier1	-	-	30	0	0.00	34	22	38.60
TGM7	0	genome.wustl.edu	37	15	43585021	43585021	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	15	43585021	43585021	C	T	SNP	TGM7	ENST00000452443	human	ensembl	74_37	-1	known	missense	c.325	p.A109T	0.912	pfam_Transglutaminase_N,superfamily_Ig_E-set	pfam_Transglutaminase_N,pfam_Transglutaminase_C,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM7	HGNC	ENSG00000159495	tier1	-	-	58	0	0.00	75	48	39.02
LAMA5	0	genome.wustl.edu	37	20	60908645	60908645	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	20	60908645	60908645	C	T	SNP	LAMA5	ENST00000252999	human	ensembl	74_37	-1	known	missense	c.2996	p.R999H	0.078	NULL	pfam_EGF_laminin,pfam_Laminin_I,pfam_Laminin_G,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	LAMA5	HGNC	ENSG00000130702	tier1	-	-	12	0	0.00	21	7	25.00
DIAPH2	0	genome.wustl.edu	37	X	96185820	96185820	+	Nonsense_Mutation	SNP	C	C	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	X	96185820	96185820	C	G	SNP	DIAPH2	ENST00000324765	human	ensembl	74_37	+1	known	nonsense	c.1067	p.S356*	1.000	pfam_FH3_dom,superfamily_ARM-type_fold	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,pfam_Drf_DAD,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	DIAPH2	HGNC	ENSG00000147202	tier1	-	-	65	0	0.00	95	46	32.62
KLC1	0	genome.wustl.edu	37	14	104123941	104123941	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	14	104123941	104123941	G	A	SNP	KLC1	ENST00000334553	human	ensembl	74_37	+1	known	missense	c.320	p.R107H	0.998	pfam_Rabaptin_Rab5-bd_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC1	HGNC	ENSG00000126214	tier1	-	-	31	0	0.00	40	4	9.09
ZFYVE9	0	genome.wustl.edu	37	1	52704639	52704639	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	1	52704639	52704639	C	T	SNP	ZFYVE9	ENST00000287727	human	ensembl	74_37	+1	known	missense	c.1550	p.S517L	0.979	pirsf_Znf_FYVE_SARA/endofin	pfam_DUF3480,pfam_SARA_Smad-bd,pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pirsf_Znf_FYVE_SARA/endofin,pfscan_Znf_FYVE-rel	-	no_errors	ZFYVE9	HGNC	ENSG00000157077	tier1	-	-	26	0	0.00	34	11	24.44
ENSG00000272231	0	genome.wustl.edu	37	12	74293692	74293701	+	RNA	DEL	ATACACATAC	ATACACATAC	-			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	ATACACATAC	ATACACATAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	12	74293692	74293701	ATACACATAC	-	DEL	ENSG00000272231	ENST00000606199	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.002:0.002:0.002:0.002:0.004:0.007:0.009:0.010:0.011:0.011	-	-	-	no_errors	AC136188.1	Clone_based_ensembl_gene	ENSG00000272231	tier1			NA	NA	NA	NA	NA	NA
TRAF3	0	genome.wustl.edu	37	14	103369714	103369714	+	Silent	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	14	103369714	103369714	G	A	SNP	TRAF3	ENST00000392745	human	ensembl	74_37	+1	known	silent	c.1083	p.V361	1.000	pirsf_TNF_rcpt--assoc_TRAF	pfam_MATH,superfamily_TRAF-like,smart_MATH,pirsf_TNF_rcpt--assoc_TRAF,pfscan_MATH,pfscan_Znf_RING,pfscan_Znf_TRAF	-	no_errors	TRAF3	HGNC	ENSG00000131323	tier1	-	-	22	0	0.00	8	18	69.23
CASD1	0	genome.wustl.edu	37	7	94157518	94157518	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	7	94157518	94157518	G	A	SNP	CASD1	ENST00000297273	human	ensembl	74_37	+1	known	missense	c.415	p.E139K	1.000	superfamily_Cyclin-like	pfam_Cas1_AcylTrans_dom,superfamily_Cyclin-like	-	no_errors	CASD1	HGNC	ENSG00000127995	tier1	-	-	72	0	0.00	97	61	38.36
COL12A1	0	genome.wustl.edu	37	6	75811746	75811746	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	6	75811746	75811746	T	A	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.8438	p.D2813V	1.000	pfam_Collagen	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	tier1	-	-	28	0	0.00	35	4	10.26
MT-CO1	0	genome.wustl.edu	37	MT	6327	6327	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	MT	6327	6327	T	A	SNP	MT-CO1	ENST00000361624	human	ensembl	74_37	+1	known	missense	c.424	p.S142T	NULL	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom	pfam_Cyt_c_Oxase_su1,superfamily_Cyt_c_Oxase_su1_dom,pfscan_Cyt_c_Oxase_su1_dom,prints_Cyt_c_Oxase_su1	-	no_errors	MT-CO1	HGNC	ENSG00000198804	tier1	-	-	636	0	0.00	10	2	16.67
FMR1	0	genome.wustl.edu	37	X	147018109	147018109	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	X	147018109	147018109	G	A	SNP	FMR1	ENST00000370475	human	ensembl	74_37	+1	known	missense	c.967	p.E323K	1.000	smart_KH_dom,pfscan_KH_dom_type_1	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet-like_dom,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FMR1	HGNC	ENSG00000102081	tier1	-	-	112	0	0.00	127	60	31.75
ENSG00000259180	0	genome.wustl.edu	37	15	55972660	55972661	+	RNA	INS	-	-	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	15	55972660	55972661	-	T	INS	ENSG00000259180	ENST00000561155	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-420M1.2	Clone_based_vega_gene	ENSG00000259180	tier1			24	0	0.00	34	6	15.00
SLC6A10P	0	genome.wustl.edu	37	16	32893375	32893375	+	RNA	SNP	C	C	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	16	32893375	32893375	C	A	SNP	SLC6A10P	ENST00000330048	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC6A10P	HGNC	ENSG00000214617	tier1	-	-	12	0	0.00	11	8	42.11
CNOT1	0	genome.wustl.edu	37	16	58592426	58592426	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	16	58592426	58592426	A	C	SNP	CNOT1	ENST00000317147	human	ensembl	74_37	-1	known	missense	c.2283	p.N761K	1.000	NULL	pfam_CCR4-Not_Not1_C,superfamily_ARM-type_fold	-	no_errors	CNOT1	HGNC	ENSG00000125107	tier1	-	-	47	0	0.00	76	37	32.74
PTPRG	0	genome.wustl.edu	37	3	62248555	62248555	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	3	62248555	62248555	T	G	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.2642	p.I881S	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	tier1	-	-	32	0	0.00	38	14	26.92
MED12L	0	genome.wustl.edu	37	3	150877791	150877791	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	3	150877791	150877791	C	T	SNP	MED12L	ENST00000474524	human	ensembl	74_37	+1	known	missense	c.1010	p.P337L	0.993	pfam_Mediator_Med12_LCEWAV	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12,pfam_Mediator_Med12_catenin-bd	-	no_errors	MED12L	HGNC	ENSG00000144893	tier1	-	-	27	0	0.00	39	5	11.36
DNM1P47	0	genome.wustl.edu	37	15	102294648	102294648	+	RNA	SNP	T	T	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	15	102294648	102294648	T	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	55	0	0.00	68	7	9.33
KIAA0391	0	genome.wustl.edu	37	14	35592700	35592700	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	14	35592700	35592700	T	-	DEL	KIAA0391	ENST00000534898	human	ensembl	74_37	+1	known	frame_shift_del	c.249	p.L86fs	0.277	NULL	NULL	-	no_errors	KIAA0391	HGNC	ENSG00000100890	tier1			32	0	0.00	21	4	16.00
OR7C1	0	genome.wustl.edu	37	19	14910726	14910726	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	19	14910726	14910726	A	T	SNP	OR7C1	ENST00000248073	human	ensembl	74_37	-1	known	missense	c.223	p.S75T	0.876	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7C1	HGNC	ENSG00000127530	tier1	-	-	59	0	0.00	68	41	37.61
PIGF	0	genome.wustl.edu	37	2	46842277	46842277	+	Silent	SNP	T	T	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	2	46842277	46842277	T	C	SNP	PIGF	ENST00000281382	human	ensembl	74_37	-1	known	silent	c.27	p.L9	0.236	NULL	pfam_GPI_biosynthesis_protein_Pig-F	-	no_errors	PIGF	HGNC	ENSG00000151665	tier1	-	-	47	0	0.00	51	35	40.70
CASC5	0	genome.wustl.edu	37	15	40916633	40916633	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	15	40916633	40916633	C	G	SNP	CASC5	ENST00000346991	human	ensembl	74_37	+1	known	missense	c.4249	p.L1417V	0.007	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	tier1	-	-	23	0	0.00	46	14	23.33
PCDHA6	0	genome.wustl.edu	37	5	140208853	140208853	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	5	140208853	140208853	G	A	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.1177	p.V393I	0.017	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	tier1	-	-	67	0	0.00	67	44	39.64
NUP155	0	genome.wustl.edu	37	5	37348686	37348686	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	5	37348686	37348686	C	T	SNP	NUP155	ENST00000231498	human	ensembl	74_37	-1	known	missense	c.916	p.G306R	1.000	pfam_Nucleoporin_Nup133/Nup155_N	pfam_Nucleoporin_Nup133/Nup155_C,pfam_Nucleoporin_Nup133/Nup155_N,superfamily_WD40_repeat_dom	-	no_errors	NUP155	HGNC	ENSG00000113569	tier1	-	-	20	0	0.00	29	18	38.30
FAM230A	0	genome.wustl.edu	37	22	20710080	20710080	+	Silent	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	22	20710080	20710080	G	A	SNP	FAM230A	ENST00000434783	human	ensembl	74_37	+1	known	silent	c.1812	p.S604	0.061	superfamily_Kinase-like_dom	pfam_Ret-finger_pr-like_3_antisense,superfamily_Kinase-like_dom	-	no_errors	FAM230A	HGNC	ENSG00000188280	tier1	-	-	52	0	0.00	45	22	32.84
KCNH3	0	genome.wustl.edu	37	12	49948282	49948282	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	12	49948282	49948282	G	A	SNP	KCNH3	ENST00000257981	human	ensembl	74_37	+1	known	missense	c.2081	p.R694H	0.723	superfamily_cNMP-bd-like,smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_cNMP-bd_dom,pfam_PAS_4,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ELK,prints_K_chnl_volt-dep_ERG,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,tigrfam_PAS	-	no_errors	KCNH3	HGNC	ENSG00000135519	tier1	-	-	39	0	0.00	45	5	10.00
BANP	0	genome.wustl.edu	37	16	88105406	88105406	+	RNA	SNP	T	T	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	16	88105406	88105406	T	C	SNP	BANP	ENST00000481948	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	BANP	HGNC	ENSG00000172530	tier1	-	-	22	0	0.00	33	6	15.38
CDH23	0	genome.wustl.edu	37	10	73461843	73461843	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	10	73461843	73461843	A	G	SNP	CDH23	ENST00000224721	human	ensembl	74_37	+1	putative	missense	c.2477	p.N826S	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH23	HGNC	ENSG00000107736	tier1	-	-	32	0	0.00	33	4	10.81
RUVBL2	0	genome.wustl.edu	37	19	49513277	49513277	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	19	49513277	49513277	G	C	SNP	RUVBL2	ENST00000595090	human	ensembl	74_37	+1	known	missense	c.617	p.G206A	1.000	pfam_TIP49_C,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_AAA+_ATPase,prints_DNA_repair_RadA	pfam_TIP49_C,pfam_ATPase_AAA_core,pfam_DNA_helicase_DnaB-like_C,superfamily_P-loop_NTPase,superfamily_NA-bd_OB-fold,smart_AAA+_ATPase,prints_DNA_repair_RadA	-	no_errors	RUVBL2	HGNC	ENSG00000183207	tier1	-	-	47	0	0.00	15	18	54.55
KCTD3	0	genome.wustl.edu	37	1	215749265	215749265	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	1	215749265	215749265	G	T	SNP	KCTD3	ENST00000259154	human	ensembl	74_37	+1	known	missense	c.205	p.A69S	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,superfamily_WD40_repeat_dom,smart_BTB/POZ-like,smart_WD40_repeat,pfscan_BTB/POZ-like	-	no_errors	KCTD3	HGNC	ENSG00000136636	tier1	-	-	43	0	0.00	62	34	35.42
TP53	0	genome.wustl.edu	37	17	7573976	7573976	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	17	7573976	7573976	T	C	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.1051	p.K351E	0.959	pfam_p53_tetrameristn,superfamily_p53_tetrameristn	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs141402957	-	18	0	0.00	10	17	62.96
LOC644794	0	genome.wustl.edu	37	7	66369212	66369213	+	RNA	INS	-	-	GGCCTTTCCAGGCCCAGCTCTCGCCTCCCGGC			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	7	66369212	66369213	-	GGCCTTTCCAGGCCCAGCTCTCGCCTCCCGGC	INS	LOC644794	ENST00000610177	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.293:0.454	-	-	-	no_errors	RP11-458F8.4	Clone_based_vega_gene	ENSG00000273142	tier1			NA	NA	NA	NA	NA	NA
TMPRSS11E	0	genome.wustl.edu	37	4	69343294	69343294	+	Silent	SNP	T	T	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	4	69343294	69343294	T	C	SNP	TMPRSS11E	ENST00000305363	human	ensembl	74_37	+1	known	silent	c.915	p.F305	0.000	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_HAT/DESC1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_SEA_dom,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pirsf_Pept_S1A_HAT/DESC1,pfscan_SEA_dom,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	TMPRSS11E	HGNC	ENSG00000087128	tier1	-	-	39	0	0.00	85	34	28.57
PTPRZ1	0	genome.wustl.edu	37	7	121624027	121624028	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	7	121624027	121624028	-	T	INS	PTPRZ1	ENST00000393386	human	ensembl	74_37	+1	known	frame_shift_ins	c.784_785	p.C264fs	0.999:1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	tier1			28	0	0.00	56	10	15.15
RASGRF1	0	genome.wustl.edu	37	15	79324514	79324514	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	15	79324514	79324514	T	A	SNP	RASGRF1	ENST00000419573	human	ensembl	74_37	-1	known	missense	c.1103	p.D368V	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF1	HGNC	ENSG00000058335	tier1	-	-	37	0	0.00	23	29	55.77
INGX	0	genome.wustl.edu	37	X	70711917	70711917	+	RNA	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	X	70711917	70711917	G	A	SNP	INGX	ENST00000489074	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.008	-	-	-	no_errors	INGX	HGNC	ENSG00000243468	tier1	-	-	45	0	0.00	58	6	9.38
CLIC4	0	genome.wustl.edu	37	1	25167316	25167316	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	1	25167316	25167316	T	C	SNP	CLIC4	ENST00000374379	human	ensembl	74_37	+1	known	missense	c.650	p.I217T	1.000	superfamily_Glutathione-S-Trfase_C-like,tigrfam_Int_Cl_channel	superfamily_Glutathione-S-Trfase_C-like,superfamily_Thioredoxin-like_fold,prints_Int_Cl_channel,tigrfam_Int_Cl_channel	-	no_errors	CLIC4	HGNC	ENSG00000169504	tier1	-	-	24	0	0.00	27	18	40.00
UBC	0	genome.wustl.edu	37	12	125396494	125396494	+	Silent	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	12	125396494	125396494	C	T	SNP	UBC	ENST00000339647	human	ensembl	74_37	-1	known	silent	c.1824	p.G608	0.620	pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup,prints_Ubiquitin	-	no_errors	UBC	HGNC	ENSG00000150991	tier1	-	-	28	0	0.00	28	26	48.15
ULK4	0	genome.wustl.edu	37	3	41723042	41723042	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	3	41723042	41723042	C	A	SNP	ULK4	ENST00000301831	human	ensembl	74_37	-1	known	missense	c.2935	p.D979Y	0.997	superfamily_ARM-type_fold	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ULK4	HGNC	ENSG00000168038	tier1	-	-	36	0	0.00	48	16	25.00
LAMA2	0	genome.wustl.edu	37	6	129618898	129618898	+	Silent	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	6	129618898	129618898	G	A	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	silent	c.2925	p.K975	0.963	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	tier1	-	-	27	0	0.00	55	20	26.67
ENSG00000261863	0	genome.wustl.edu	37	17	4513974	4513975	+	RNA	INS	-	-	AAAG			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	17	4513974	4513975	-	AAAG	INS	ENSG00000261863	ENST00000573270	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006:0.005	-	-	-	no_errors	RP11-141J13.5	Clone_based_vega_gene	ENSG00000261863	tier1			8	0	0.00	3	5	62.50
RTF1	0	genome.wustl.edu	37	15	41769421	41769421	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	15	41769421	41769421	A	T	SNP	RTF1	ENST00000389629	human	ensembl	74_37	+1	known	missense	c.1619	p.N540I	1.000	NULL	pfam_Plus-3,smart_Plus3-dom_subgr	-	no_errors	RTF1	HGNC	ENSG00000137815	tier1	-	-	28	0	0.00	44	15	25.00
MTR	0	genome.wustl.edu	37	1	237044109	237044109	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	1	237044109	237044109	C	-	DEL	MTR	ENST00000366577	human	ensembl	74_37	+1	known	frame_shift_del	c.2649	p.L884fs	1.000	superfamily_Cobalamin-bd,pirsf_MetH,tigrfam_MetH	pfam_S_MeTrfase,pfam_VitB12-dep_Met_synth_activ_dom,pfam_Pterin-binding,pfam_Cbl-bd_cap,pfam_Cobalamin-bd,superfamily_VitB12-dep_Met_synth_activ_dom,superfamily_S_MeTrfase,superfamily_Dihydropteroate_synth-like,superfamily_Cobalamin-bd,superfamily_Cbl-bd_cap,pirsf_MetH,pfscan_VitB12-dep_Met_synth_activ_dom,pfscan_S_MeTrfase,pfscan_Pterin-binding,tigrfam_MetH	-	no_errors	MTR	HGNC	ENSG00000116984	tier1			34	0	0.00	42	22	34.38
DNM1P47	0	genome.wustl.edu	37	15	102294651	102294651	+	RNA	SNP	T	T	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	15	102294651	102294651	T	G	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	55	0	0.00	69	7	9.21
ARSG	0	genome.wustl.edu	37	17	66339909	66339909	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	17	66339909	66339909	C	T	SNP	ARSG	ENST00000448504	human	ensembl	74_37	+1	known	missense	c.383	p.A128V	0.266	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	pfam_Sulfatase,superfamily_Alkaline_phosphatase_core	-	no_errors	ARSG	HGNC	ENSG00000141337	tier1	rs201030584	-	27	0	0.00	20	13	39.39
TMED4	0	genome.wustl.edu	37	7	44621732	44621732	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	7	44621732	44621732	G	A	SNP	TMED4	ENST00000457408	human	ensembl	74_37	-1	known	missense	c.74	p.T25I	0.000	NULL	pfam_GOLD,pfscan_GOLD	-	no_errors	TMED4	HGNC	ENSG00000158604	tier1	-	-	30	0	0.00	24	16	40.00
MIR4435-1HG	0	genome.wustl.edu	37	2	112252633	112252633	+	RNA	DEL	A	A	-			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	2	112252633	112252633	A	-	DEL	MIR4435-1HG	ENST00000409569	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.775	-	-	-	no_errors	MIR4435-1HG	HGNC	ENSG00000172965	tier1			23	0	0.00	40	6	13.04
LOC100128164	0	genome.wustl.edu	37	3	169663318	169663318	+	RNA	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	3	169663318	169663318	G	A	SNP	LOC100128164	ENST00000483289	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-379K17.4	Clone_based_vega_gene	ENSG00000239219	tier1	-	-	9	0	0.00	6	12	66.67
SGMS1	0	genome.wustl.edu	37	10	52066985	52066985	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	10	52066985	52066985	G	C	SNP	SGMS1	ENST00000361781	human	ensembl	74_37	-1	known	missense	c.1159	p.R387G	1.000	NULL	pfam_P_Acid_Pase_2/haloperoxidase,pfam_SAM_type1,superfamily_SAM/pointed,superfamily_P_Acid_Pase_2/haloperoxidase,pfscan_SAM	-	no_errors	SGMS1	HGNC	ENSG00000198964	tier1	-	-	32	0	0.00	27	25	48.08
FUNDC1	0	genome.wustl.edu	37	X	44397736	44397736	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	X	44397736	44397736	C	G	SNP	FUNDC1	ENST00000378045	human	ensembl	74_37	-1	known	missense	c.238	p.G80R	1.000	pfam_FUN14	pfam_FUN14	-	no_errors	FUNDC1	HGNC	ENSG00000069509	tier1	-	-	112	0	0.00	108	49	31.01
ERN1	0	genome.wustl.edu	37	17	62122801	62122801	+	Silent	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	17	62122801	62122801	C	T	SNP	ERN1	ENST00000433197	human	ensembl	74_37	-1	known	silent	c.2571	p.P857	0.962	pfam_KEN_dom,superfamily_Kinase-like_dom	pfam_Prot_kinase_dom,pfam_KEN_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN1	HGNC	ENSG00000178607	tier1	-	-	17	0	0.00	9	3	25.00
RUNX1T1	0	genome.wustl.edu	37	8	92998487	92998487	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	8	92998487	92998487	G	C	SNP	RUNX1T1	ENST00000436581	human	ensembl	74_37	-1	known	missense	c.1177	p.Q393E	1.000	pfam_NHR2	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTG8	-	no_errors	RUNX1T1	HGNC	ENSG00000079102	tier1	-	-	35	0	0.00	75	24	24.24
RB1	0	genome.wustl.edu	37	13	48941691	48941691	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	13	48941691	48941691	G	T	SNP	RB1	ENST00000267163	human	ensembl	74_37	+1	known	missense	c.1001	p.R334I	1.000	NULL	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1	-	-	26	0	0.00	13	16	55.17
THADA	0	genome.wustl.edu	37	2	43520007	43520007	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	2	43520007	43520007	G	A	SNP	THADA	ENST00000405006	human	ensembl	74_37	-1	known	missense	c.4784	p.A1595V	0.802	superfamily_ARM-type_fold	pfam_DUF2428_death-receptor-like,superfamily_ARM-type_fold	-	no_errors	THADA	HGNC	ENSG00000115970	tier1	-	-	34	0	0.00	59	34	36.56
CUL4B	0	genome.wustl.edu	37	X	119691849	119691849	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	X	119691849	119691849	T	G	SNP	CUL4B	ENST00000404115	human	ensembl	74_37	-1	known	missense	c.656	p.K219T	1.000	pfam_Cullin_N,superfamily_Cullin_repeat-like_dom	pfam_Cullin_N,pfam_Cullin_neddylation_domain,superfamily_Cullin_repeat-like_dom,superfamily_Cullin_homology,smart_Cullin_homology,smart_Cullin_neddylation_domain,pfscan_Cullin_homology	-	no_errors	CUL4B	HGNC	ENSG00000158290	tier1	-	-	30	0	0.00	48	12	20.00
VDAC1	0	genome.wustl.edu	37	5	133316708	133316709	+	RNA	DEL	TT	TT	-			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	5	133316708	133316709	TT	-	DEL	VDAC1	ENST00000492324	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	VDAC1	HGNC	ENSG00000213585	tier1			9	0	0.00	24	3	11.11
SGTB	0	genome.wustl.edu	37	5	64976603	64976603	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	5	64976603	64976603	C	A	SNP	SGTB	ENST00000381007	human	ensembl	74_37	-1	known	missense	c.498	p.L166F	1.000	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SGTB	HGNC	ENSG00000197860	tier1	-	-	21	0	0.00	37	21	36.21
MAP9	0	genome.wustl.edu	37	4	156273880	156273880	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	4	156273880	156273880	C	T	SNP	MAP9	ENST00000311277	human	ensembl	74_37	-1	known	nonsense	c.1689	p.W563*	1.000	NULL	NULL	-	no_errors	MAP9	HGNC	ENSG00000164114	tier1	-	-	19	0	0.00	31	17	35.42
SPRY3	0	genome.wustl.edu	37	X	155003891	155003891	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	X	155003891	155003891	G	A	SNP	SPRY3	ENST00000302805	human	ensembl	74_37	+1	known	missense	c.358	p.G120R	0.387	NULL	pfam_Sprouty	-	no_errors	SPRY3	HGNC	ENSG00000168939	tier1	-	-	57	0	0.00	51	38	42.70
OR5AP2	0	genome.wustl.edu	37	11	56409135	56409135	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	11	56409135	56409135	T	A	SNP	OR5AP2	ENST00000544374	human	ensembl	74_37	-1	known	missense	c.784	p.I262F	0.019	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AP2	HGNC	ENSG00000172464	tier1	-	-	28	0	0.00	25	17	40.48
TMEM132C	0	genome.wustl.edu	37	12	129153983	129153983	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	12	129153983	129153983	G	A	SNP	TMEM132C	ENST00000435159	human	ensembl	74_37	+1	known	missense	c.1327	p.A443T	1.000	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234	tier1	-	-	55	0	0.00	46	26	36.11
PODXL	0	genome.wustl.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	7	131241029	131241030	-	GGCGAC	INS	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	in_frame_ins	c.90_89	p.32in_frame_insPS	0.002:0.003	pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567	tier1			NA	NA	NA	NA	NA	NA
PPFIA1	0	genome.wustl.edu	37	11	70184503	70184503	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	11	70184503	70184503	A	T	SNP	PPFIA1	ENST00000253925	human	ensembl	74_37	+1	known	missense	c.1515	p.E505D	0.714	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	PPFIA1	HGNC	ENSG00000131626	tier1	-	-	27	0	0.00	25	24	48.98
TPRX1	0	genome.wustl.edu	37	19	48305639	48305650	+	In_Frame_Del	DEL	GGGCCTGGGATC	GGGCCTGGGATC	-			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	GGGCCTGGGATC	GGGCCTGGGATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	19	48305639	48305650	GGGCCTGGGATC	-	DEL	TPRX1	ENST00000535759	human	ensembl	74_37	-1	known	in_frame_del	c.920_909	p.PGPI305in_frame_del	0.077:0.077:0.076:0.064:0.061:0.056:0.042:0.003:0.000:0.000:0.000:0.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	TPRX1	HGNC	ENSG00000178928	tier1			NA	NA	NA	NA	NA	NA
FAM20C	0	genome.wustl.edu	37	7	286468	286469	+	Frame_Shift_Ins	INS	-	-	GACAGGTGAGCCCTTCCTTCCTCCCTCCATCCGC			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	7	286468	286469	-	GACAGGTGAGCCCTTCCTTCCTCCCTCCATCCGC	INS	FAM20C	ENST00000313766	human	ensembl	74_37	+1	known	frame_shift_ins	c.951_952	p.I319fs	0.998:1.000	NULL	pfam_DUF1193	-	no_errors	FAM20C	HGNC	ENSG00000177706	tier1			NA	NA	NA	NA	NA	NA
PTCHD4	0	genome.wustl.edu	37	6	47846497	47846497	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	6	47846497	47846497	T	C	SNP	PTCHD4	ENST00000339488	human	ensembl	74_37	-1	known	missense	c.2083	p.I695V	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD4	HGNC	ENSG00000244694	tier1	-	-	27	0	0.00	9	10	52.63
CEP350	0	genome.wustl.edu	37	1	180062224	180062233	+	Frame_Shift_Del	DEL	GTTGAAAGAG	GTTGAAAGAG	-			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	GTTGAAAGAG	GTTGAAAGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	1	180062224	180062233	GTTGAAAGAG	-	DEL	CEP350	ENST00000367607	human	ensembl	74_37	+1	known	frame_shift_del	c.6984_6993	p.M2328fs	0.000:0.000:0.001:0.004:0.066:0.121:0.165:0.206:0.221:0.109	NULL	pfam_CAP-Gly_domain,superfamily_CAP-Gly_domain,pfscan_CAP-Gly_domain	-	no_errors	CEP350	HGNC	ENSG00000135837	tier1			NA	NA	NA	NA	NA	NA
ELFN2	0	genome.wustl.edu	37	22	37771876	37771877	+	RNA	INS	-	-	CCT			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	22	37771876	37771877	-	CCT	INS	ELFN2	ENST00000414347	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.043	-	-	-	no_errors	ELFN2	HGNC	ENSG00000166897	tier1			26	0	0.00	25	5	16.67
MDC1	0	genome.wustl.edu	37	6	30673085	30673085	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	6	30673085	30673085	C	T	SNP	MDC1	ENST00000376406	human	ensembl	74_37	-1	known	missense	c.3875	p.R1292Q	0.000	NULL	pfam_FHA_dom,superfamily_BRCT_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,pfscan_BRCT_dom,pfscan_FHA_dom	-	no_errors	MDC1	HGNC	ENSG00000137337	tier1	rs200569280	-	49	0	0.00	50	5	9.09
PLA2G5	0	genome.wustl.edu	37	1	20416375	20416375	+	Silent	SNP	C	C	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	1	20416375	20416375	C	T	SNP	PLA2G5	ENST00000375108	human	ensembl	74_37	+1	known	silent	c.279	p.G93	0.390	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	pfam_PLipase_A2_dom,superfamily_PLipase_A2_dom,smart_PLipase_A2_dom,prints_PLipase_A2	-	no_errors	PLA2G5	HGNC	ENSG00000127472	tier1	-	-	35	0	0.00	50	20	28.57
DNHD1	0	genome.wustl.edu	37	11	6567895	6567896	+	In_Frame_Ins	INS	-	-	TGCCCTACTGCA			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	11	6567895	6567896	-	TGCCCTACTGCA	INS	DNHD1	ENST00000254579	human	ensembl	74_37	+1	known	in_frame_ins	c.5726_5727	p.1913in_frame_insHALL	0.551:0.033	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom,superfamily_P-loop_NTPase,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	tier1			NA	NA	NA	NA	NA	NA
ZCCHC8	0	genome.wustl.edu	37	12	122966188	122966188	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	12	122966188	122966188	C	G	SNP	ZCCHC8	ENST00000336229	human	ensembl	74_37	-1	known	missense	c.899	p.G300A	1.000	pfam_PSP,smart_PSP	pfam_PSP,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_Znf_CCHC,smart_PSP,pfscan_Znf_CCHC	-	no_errors	ZCCHC8	HGNC	ENSG00000033030	tier1	-	-	34	0	0.00	45	24	34.29
KRTAP10-9	0	genome.wustl.edu	37	21	46048196	46048197	+	RNA	INS	-	-	CGCTGGT			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	21	46048196	46048197	-	CGCTGGT	INS	KRTAP10-9	ENST00000484861	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	KRTAP10-9	HGNC	ENSG00000221837	tier1			NA	NA	NA	NA	NA	NA
FAM214B	0	genome.wustl.edu	37	9	35108025	35108025	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	9	35108025	35108025	G	T	SNP	FAM214B	ENST00000322813	human	ensembl	74_37	-1	known	missense	c.247	p.P83T	1.000	NULL	NULL	-	no_errors	FAM214B	HGNC	ENSG00000005238	tier1	-	-	97	0	0.00	128	60	31.75
PKP4	0	genome.wustl.edu	37	2	159533343	159533343	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	2	159533343	159533343	A	T	SNP	PKP4	ENST00000389759	human	ensembl	74_37	+1	known	missense	c.3220	p.S1074C	1.000	NULL	pfam_Armadillo,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	PKP4	HGNC	ENSG00000144283	tier1	-	-	62	0	0.00	91	57	38.51
ABCB11	0	genome.wustl.edu	37	2	169826677	169826677	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	2	169826677	169826677	G	A	SNP	ABCB11	ENST00000263817	human	ensembl	74_37	-1	known	nonsense	c.1687	p.Q563*	1.000	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB11	HGNC	ENSG00000073734	tier1	-	-	39	0	0.00	65	15	18.75
PCLO	0	genome.wustl.edu	37	7	82545961	82545961	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	7	82545961	82545961	G	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	nonsense	c.11341	p.R3781*	0.768	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	21	0	0.00	28	18	39.13
LOC101927601	0	genome.wustl.edu	37	15	82637166	82637167	+	Frame_Shift_Ins	INS	-	-	CCCTCTCC			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	15	82637166	82637167	-	CCCTCTCC	INS	LOC101927601	ENST00000439287	human	ensembl	74_37	-1	known	frame_shift_ins	c.920_919	p.E307fs	0.989:0.976	NULL	NULL	-	no_errors	GOLGA6L10	Uniprot_gn	ENSG00000205281	tier1			NA	NA	NA	NA	NA	NA
COL18A1-AS1	0	genome.wustl.edu	37	21	46841201	46841201	+	RNA	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	21	46841201	46841201	G	A	SNP	COL18A1-AS1	ENST00000397787	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	COL18A1-AS1	HGNC	ENSG00000183535	tier1	-	-	26	0	0.00	33	4	10.81
PIDD	0	genome.wustl.edu	37	11	799456	799456	+	Silent	SNP	G	G	T			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	11	799456	799456	G	T	SNP	PIDD	ENST00000347755	human	ensembl	74_37	-1	known	silent	c.2584	p.R862	1.000	pfam_Death_domain,superfamily_DEATH-like_dom,smart_Death_domain,pfscan_Death_domain	pfam_Peptidase_S68_pidd,pfam_Death_domain,pfam_Leu-rich_rpt,pfam_ZU5,superfamily_DEATH-like_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Death_domain,pfscan_Death_domain,pfscan_ZU5	-	no_errors	PIDD	HGNC	ENSG00000177595	tier1	-	-	43	0	0.00	33	4	10.81
NOS1AP	0	genome.wustl.edu	37	1	162326888	162326890	+	In_Frame_Del	DEL	CAG	CAG	-			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	CAG	CAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	1	162326888	162326890	CAG	-	DEL	NOS1AP	ENST00000361897	human	ensembl	74_37	+1	known	in_frame_del	c.901_903	p.Q304in_frame_del	1.000:1.000:1.000	NULL	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	-	no_errors	NOS1AP	HGNC	ENSG00000198929	tier1			19	0	0.00	22	3	12.00
RNASE12	0	genome.wustl.edu	37	14	21058865	21058865	+	Silent	SNP	T	T	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	14	21058865	21058865	T	A	SNP	RNASE12	ENST00000556526	human	ensembl	74_37	-1	known	silent	c.18	p.I6	0.000	NULL	pfam_RNaseA_domain,superfamily_RNaseA_domain,smart_RNaseA_domain,prints_RNaseA	-	no_errors	RNASE12	HGNC	ENSG00000258436	tier1	-	-	18	0	0.00	24	11	31.43
NRXN3	0	genome.wustl.edu	37	14	80327536	80327536	+	Silent	SNP	G	G	A			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	14	80327536	80327536	G	A	SNP	NRXN3	ENST00000557594	human	ensembl	74_37	+1	novel	silent	c.1143	p.A381	1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Neurexin-like,pfscan_Laminin_G	-	no_errors	NRXN3	HGNC	ENSG00000021645	tier1	-	-	47	0	0.00	28	34	54.84
SSFA2	0	genome.wustl.edu	37	2	182786788	182786788	+	Silent	SNP	A	A	G			TCGA-DX-A6Z2-01A-12D-A36J-09	TCGA-DX-A6Z2-11A-11D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	4035ea7d-e77b-4637-afb9-5be5411d0a38	4269113e-908e-4959-b1f2-6cfd8a779d59	2	182786788	182786788	A	G	SNP	SSFA2	ENST00000431877	human	ensembl	74_37	+1	known	silent	c.3324	p.Q1108	0.772	NULL	NULL	-	no_errors	SSFA2	HGNC	ENSG00000138434	tier1	-	-	34	0	0.00	62	25	28.74
