Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
LILRA4	0	genome.wustl.edu	37	19	54844969	54844969	+	Silent	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	19	54844969	54844969	C	T	SNP	LILRA4	ENST00000291759	human	ensembl	74_37	-1	known	silent	c.1374	p.L458	0.000	pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA4	HGNC	ENSG00000239961	tier1	-	-	74	0	0.00	43	43	50.00
MXD3	0	genome.wustl.edu	37	5	176734831	176734831	+	Silent	SNP	G	G	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	5	176734831	176734831	G	A	SNP	MXD3	ENST00000439742	human	ensembl	74_37	-1	known	silent	c.456	p.D152	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MXD3	HGNC	ENSG00000213347	tier1	-	-	28	0	0.00	41	18	30.51
MARCH7	0	genome.wustl.edu	37	2	160605149	160605149	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	2	160605149	160605149	G	A	SNP	MARCH7	ENST00000259050	human	ensembl	74_37	+1	known	missense	c.1348	p.A450T	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	tier1	-	-	44	0	0.00	37	4	9.76
CLPX	0	genome.wustl.edu	37	15	65450174	65450174	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	15	65450174	65450174	T	C	SNP	CLPX	ENST00000300107	human	ensembl	74_37	-1	known	missense	c.967	p.T323A	1.000	pfam_ATPase_AAA-2,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	pfam_ATPase_AAA-2,pfam_Clp_ATPase_C,pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_Sigma_54_int,superfamily_P-loop_NTPase,smart_AAA+_ATPase,tigrfam_Clp_protease_ATP-bd_su_ClpX	-	no_errors	CLPX	HGNC	ENSG00000166855	tier1	-	-	80	0	0.00	48	61	55.96
PIK3C2G	0	genome.wustl.edu	37	12	18439811	18439811	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	12	18439811	18439811	G	T	SNP	PIK3C2G	ENST00000538779	human	ensembl	74_37	+1	known	missense	c.709	p.V237L	0.990	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	tier1	-	-	93	0	0.00	50	65	56.52
IL17RD	0	genome.wustl.edu	37	3	57132322	57132322	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	3	57132322	57132322	G	A	SNP	IL17RD	ENST00000296318	human	ensembl	74_37	-1	known	missense	c.1409	p.A470V	0.000	pfam_SEFIR	pfam_SEFIR,superfamily_TIR_dom	-	no_errors	IL17RD	HGNC	ENSG00000144730	tier1	-	-	27	0	0.00	38	10	20.83
SPATA31D1	0	genome.wustl.edu	37	9	84609274	84609274	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	9	84609274	84609274	G	A	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.3889	p.V1297M	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929	tier1	-	-	40	0	0.00	35	42	54.55
FIP1L1	0	genome.wustl.edu	37	4	54319248	54319249	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	4	54319248	54319249	AG	-	DEL	FIP1L1	ENST00000337488	human	ensembl	74_37	+1	known	frame_shift_del	c.1447_1448	p.E486fs	0.975:0.991	NULL	pfam_Fip1	-	no_errors	FIP1L1	HGNC	ENSG00000145216	tier1			18	0	0.00	18	4	18.18
LOC101927345	0	genome.wustl.edu	37	1	143380773	143380773	+	RNA	SNP	T	T	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	143380773	143380773	T	A	SNP	LOC101927345	ENST00000423394	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261	tier1	rs200474762	-	21	0	0.00	11	4	26.67
ABAT	0	genome.wustl.edu	37	16	8857959	8857959	+	Silent	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	16	8857959	8857959	C	T	SNP	ABAT	ENST00000268251	human	ensembl	74_37	+1	known	silent	c.400	p.L134	1.000	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk	pfam_Aminotrans_3,superfamily_PyrdxlP-dep_Trfase,tigrfam_4NH2But_aminotransferase_euk	-	no_errors	ABAT	HGNC	ENSG00000183044	tier1	-	-	33	0	0.00	35	26	41.94
ENSG00000216020	0	genome.wustl.edu	37	3	191693744	191693749	+	RNA	DEL	GTGTGT	GTGTGT	-			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	GTGTGT	GTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	3	191693744	191693749	GTGTGT	-	DEL	ENSG00000216020	ENST00000401201	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AC026320.1	Clone_based_ensembl_gene	ENSG00000216020	tier1			NA	NA	NA	NA	NA	NA
PRAMEF19	0	genome.wustl.edu	37	1	13695804	13695804	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	13695804	13695804	A	T	SNP	PRAMEF19	ENST00000540591	human	ensembl	74_37	-1	known	missense	c.1161	p.N387K	0.002	NULL	NULL	-	no_errors	PRAMEF19	HGNC	ENSG00000204480	tier1	-	-	120	0	0.00	69	31	31.00
CNST	0	genome.wustl.edu	37	1	246810848	246810848	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	246810848	246810848	G	C	SNP	CNST	ENST00000366513	human	ensembl	74_37	+1	known	missense	c.1345	p.E449Q	0.012	NULL	NULL	-	no_errors	CNST	HGNC	ENSG00000162852	tier1	-	-	42	0	0.00	73	19	20.65
CST3	0	genome.wustl.edu	37	20	23618269	23618282	+	Frame_Shift_Del	DEL	GCGCACCACCTGCA	GCGCACCACCTGCA	-			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	GCGCACCACCTGCA	GCGCACCACCTGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	20	23618269	23618282	GCGCACCACCTGCA	-	DEL	CST3	ENST00000376925	human	ensembl	74_37	-1	known	frame_shift_del	c.231_218	p.L73fs	0.010:0.014:0.007:0.010:0.010:0.003:0.010:0.026:0.021:0.004:0.000:0.000:0.000:0.000	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	pfam_Prot_inh_cystat,smart_Prot_inh_cystat	-	no_errors	CST3	HGNC	ENSG00000101439	tier1			NA	NA	NA	NA	NA	NA
TRAF4	0	genome.wustl.edu	37	17	27076468	27076468	+	Splice_Site	SNP	A	A	G			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	17	27076468	27076468	A	G	SNP	TRAF4	ENST00000262396	human	ensembl	74_37	+1	novel	splice_site	c.463-2	e5-2	1.000	-	-	-	no_errors	TRAF4	HGNC	ENSG00000076604	tier1	-	-	37	0	0.00	0	21	100.00
STXBP3	0	genome.wustl.edu	37	1	109321988	109321988	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	109321988	109321988	G	T	SNP	STXBP3	ENST00000370008	human	ensembl	74_37	+1	known	missense	c.765	p.Q255H	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	STXBP3	HGNC	ENSG00000116266	tier1	-	-	43	0	0.00	13	3	18.75
DNAH14	0	genome.wustl.edu	37	1	225539462	225539462	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	225539462	225539462	C	G	SNP	DNAH14	ENST00000430092	human	ensembl	74_37	+1	known	missense	c.11131	p.L3711V	0.988	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Tautomerase/MIF_sf,smart_AAA+_ATPase	-	no_errors	DNAH14	HGNC	ENSG00000185842	tier1	-	-	63	0	0.00	91	10	9.90
MT-RNR2	0	genome.wustl.edu	37	MT	2833	2833	+	RNA	SNP	A	A	G			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	MT	2833	2833	A	G	SNP	MT-RNR2	ENST00000387347	human	ensembl	74_37	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-RNR2	HGNC	ENSG00000210082	tier1	rs3928312	-	261	0	0.00	9	134	93.71
CHMP4B	0	genome.wustl.edu	37	20	32438798	32438798	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	20	32438798	32438798	G	C	SNP	CHMP4B	ENST00000217402	human	ensembl	74_37	+1	known	missense	c.409	p.D137H	1.000	pfam_Snf7	pfam_Snf7	-	no_errors	CHMP4B	HGNC	ENSG00000101421	tier1	-	-	86	0	0.00	144	27	15.79
BAZ2A	0	genome.wustl.edu	37	12	57004285	57004285	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	12	57004285	57004285	G	T	SNP	BAZ2A	ENST00000551812	human	ensembl	74_37	-1	known	missense	c.1693	p.R565S	1.000	pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_dom,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	tier1	-	-	35	0	0.00	41	5	10.87
GOLGA6L4	0	genome.wustl.edu	37	15	82934933	82934933	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	15	82934933	82934933	T	C	SNP	GOLGA6L4	ENST00000559949	human	ensembl	74_37	-1	putative	missense	c.647	p.H216R	0.551	NULL	NULL	-	no_errors	RP13-996F3.5	Clone_based_vega_gene	ENSG00000215749	tier1	-	-	15	0	0.00	20	11	35.48
ABHD16A	0	genome.wustl.edu	37	6	31661170	31661170	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	6	31661170	31661170	G	A	SNP	ABHD16A	ENST00000395952	human	ensembl	74_37	-1	known	missense	c.469	p.P157S	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16A	HGNC	ENSG00000204427	tier1	-	-	59	0	0.00	33	4	10.81
SYNE1	0	genome.wustl.edu	37	6	152473241	152473241	+	Silent	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	6	152473241	152473241	C	T	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	silent	c.24165	p.Q8055	1.000	superfamily_ABC1_TM_dom,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	tier1	-	-	46	0	0.00	30	4	11.76
UGT8	0	genome.wustl.edu	37	4	115544435	115544435	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	4	115544435	115544435	C	A	SNP	UGT8	ENST00000310836	human	ensembl	74_37	+1	known	missense	c.399	p.D133E	1.000	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT8	HGNC	ENSG00000174607	tier1	-	-	48	0	0.00	40	5	11.11
ORC2	0	genome.wustl.edu	37	2	201778717	201778717	+	Splice_Site	SNP	T	T	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	2	201778717	201778717	T	A	SNP	ORC2	ENST00000234296	human	ensembl	74_37	-1	known	splice_site	c.1467-2	e14-2	1.000	-	-	-	no_errors	ORC2	HGNC	ENSG00000115942	tier1	-	-	120	1	0.76	123	13	9.15
ENSG00000225946	0	genome.wustl.edu	37	7	100608194	100608195	+	RNA	INS	-	-	GTCTGGG			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	7	100608194	100608195	-	GTCTGGG	INS	ENSG00000225946	ENST00000420080	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	RP11-395B7.2	Clone_based_vega_gene	ENSG00000225946	tier1			NA	NA	NA	NA	NA	NA
TUBA3E	0	genome.wustl.edu	37	2	130951829	130951829	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	2	130951829	130951829	C	T	SNP	TUBA3E	ENST00000312988	human	ensembl	74_37	-1	known	missense	c.586	p.E196K	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin	-	no_errors	TUBA3E	HGNC	ENSG00000152086	tier1	-	-	103	0	0.00	46	52	52.53
RANBP17	0	genome.wustl.edu	37	5	170632550	170632550	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	5	170632550	170632550	G	C	SNP	RANBP17	ENST00000523189	human	ensembl	74_37	+1	known	missense	c.2165	p.R722T	1.000	superfamily_ARM-type_fold	pfam_Importin-beta_N,superfamily_ARM-type_fold,smart_Importin-beta_N	-	no_errors	RANBP17	HGNC	ENSG00000204764	tier1	-	-	60	0	0.00	96	17	15.04
FLT1	0	genome.wustl.edu	37	13	29041107	29041107	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	13	29041107	29041107	G	T	SNP	FLT1	ENST00000282397	human	ensembl	74_37	-1	known	nonsense	c.321	p.C107*	1.000	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Prot_kinase_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_VEGFR1_rcpt	-	no_errors	FLT1	HGNC	ENSG00000102755	tier1	-	-	42	0	0.00	41	4	8.89
NINL	0	genome.wustl.edu	37	20	25443278	25443279	+	RNA	INS	-	-	TTTGTTTTGT			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	20	25443278	25443279	-	TTTGTTTTGT	INS	NINL	ENST00000496509	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010:0.013	-	-	-	no_errors	NINL	HGNC	ENSG00000101004	tier1			NA	NA	NA	NA	NA	NA
MPDZ	0	genome.wustl.edu	37	9	13121767	13121767	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	9	13121767	13121767	T	-	DEL	MPDZ	ENST00000319217	human	ensembl	74_37	-1	known	frame_shift_del	c.5202	p.G1735fs	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC	ENSG00000107186	tier1			43	0	0.00	26	3	10.34
CRTC2	0	genome.wustl.edu	37	1	153924094	153924094	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	153924094	153924094	T	C	SNP	CRTC2	ENST00000368633	human	ensembl	74_37	-1	known	missense	c.1046	p.N349S	1.000	NULL	NULL	-	no_errors	CRTC2	HGNC	ENSG00000160741	tier1	-	-	34	0	0.00	58	54	48.21
ANGEL2	0	genome.wustl.edu	37	1	213186627	213186627	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	213186627	213186627	G	T	SNP	ANGEL2	ENST00000366962	human	ensembl	74_37	-1	known	missense	c.193	p.P65T	0.993	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL2	HGNC	ENSG00000174606	tier1	-	-	76	0	0.00	74	51	40.80
MRPL42	0	genome.wustl.edu	37	12	93881334	93881334	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	12	93881334	93881334	C	-	DEL	MRPL42	ENST00000361630	human	ensembl	74_37	+1	known	frame_shift_del	c.281	p.R95fs	1.000	pfam_Ribosomal-S32_mit	pfam_Ribosomal-S32_mit	-	no_errors	MRPL42	HGNC	ENSG00000198015	tier1			64	0	0.00	558	90	13.89
TPCN2	0	genome.wustl.edu	37	11	68854656	68854656	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	11	68854656	68854656	C	T	SNP	TPCN2	ENST00000294309	human	ensembl	74_37	+1	known	missense	c.2162	p.T721I	0.015	NULL	pfam_Ion_trans_dom	-	no_errors	TPCN2	HGNC	ENSG00000162341	tier1	-	-	72	0	0.00	46	4	8.00
FLNA	0	genome.wustl.edu	37	X	153587439	153587439	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	X	153587439	153587439	C	G	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.4387	p.V1463L	1.000	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	tier1	-	-	58	0	0.00	44	18	29.03
XPO4	0	genome.wustl.edu	37	13	21361716	21361716	+	Silent	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	13	21361716	21361716	C	T	SNP	XPO4	ENST00000255305	human	ensembl	74_37	-1	known	silent	c.3069	p.Q1023	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	XPO4	HGNC	ENSG00000132953	tier1	-	-	34	0	0.00	37	4	9.76
ENSG00000225946	0	genome.wustl.edu	37	7	100608197	100608198	+	RNA	INS	-	-	GGG			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	7	100608197	100608198	-	GGG	INS	ENSG00000225946	ENST00000420080	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-395B7.2	Clone_based_vega_gene	ENSG00000225946	tier1			15	0	0.00	11	4	26.67
ENAH	0	genome.wustl.edu	37	1	225707034	225707051	+	In_Frame_Del	DEL	TCCAGGCGTTCCTGCCGC	TCCAGGCGTTCCTGCCGC	-			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	TCCAGGCGTTCCTGCCGC	TCCAGGCGTTCCTGCCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	225707034	225707051	TCCAGGCGTTCCTGCCGC	-	DEL	ENAH	ENST00000366844	human	ensembl	74_37	-1	known	in_frame_del	c.668_651	p.ERQERL217in_frame_del	0.907:0.905:0.902:0.900:0.899:0.898:0.897:0.897:0.897:0.898:0.899:0.901:0.903:0.906:0.909:0.913:0.917:0.921	NULL	pfam_WH1/EVH1,pfam_VASP_tetra,smart_WH1/EVH1,pfscan_WH1/EVH1	-	no_errors	ENAH	HGNC	ENSG00000154380	tier1			NA	NA	NA	NA	NA	NA
STK36	0	genome.wustl.edu	37	2	219562254	219562254	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	2	219562254	219562254	C	A	SNP	STK36	ENST00000295709	human	ensembl	74_37	+1	known	missense	c.2830	p.L944M	0.998	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	STK36	HGNC	ENSG00000163482	tier1	-	-	30	0	0.00	29	4	12.12
BHLHB9	0	genome.wustl.edu	37	X	102003976	102003976	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	X	102003976	102003976	C	T	SNP	BHLHB9	ENST00000361229	human	ensembl	74_37	+1	known	missense	c.53	p.A18V	0.007	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	BHLHB9	HGNC	ENSG00000198908	tier1	-	-	37	0	0.00	43	4	8.51
PTPRVP	0	genome.wustl.edu	37	1	202146847	202146847	+	RNA	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	202146847	202146847	C	T	SNP	PTPRVP	ENST00000482597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.347	-	-	-	no_errors	PTPRVP	HGNC	ENSG00000243323	tier1	-	-	36	0	0.00	35	12	25.53
CYP39A1	0	genome.wustl.edu	37	6	46518104	46518104	+	Silent	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	6	46518104	46518104	C	T	SNP	CYP39A1	ENST00000275016	human	ensembl	74_37	-1	known	silent	c.1409	p.*470	0.929	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I	-	no_errors	CYP39A1	HGNC	ENSG00000146233	tier1	-	-	47	0	0.00	30	202	86.70
NDUFAF1	0	genome.wustl.edu	37	15	41689216	41689216	+	Silent	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	15	41689216	41689216	G	T	SNP	NDUFAF1	ENST00000260361	human	ensembl	74_37	-1	known	silent	c.42	p.L14	0.000	NULL	pfam_NADH-UbQ_OxRdtase-assoc_prot30,superfamily_Galactose-bd-like	-	no_errors	NDUFAF1	HGNC	ENSG00000137806	tier1	-	-	52	0	0.00	32	4	11.11
ENSG00000225411	0	genome.wustl.edu	37	9	68400476	68400476	+	RNA	SNP	G	G	C			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	9	68400476	68400476	G	C	SNP	ENSG00000225411	ENST00000417843	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene	ENSG00000225411	tier1	-	-	19	0	0.00	16	5	23.81
EFCAB2	0	genome.wustl.edu	37	1	245133623	245133624	+	Frame_Shift_Ins	INS	-	-	CCTCC			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	245133623	245133624	-	CCTCC	INS	EFCAB2	ENST00000366522	human	ensembl	74_37	+1	known	frame_shift_ins	c.199_200	p.R69fs	0.000:0.000	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	EFCAB2	HGNC	ENSG00000203666	tier1			NA	NA	NA	NA	NA	NA
CCDC132	0	genome.wustl.edu	37	7	92985322	92985322	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	7	92985322	92985322	T	G	SNP	CCDC132	ENST00000305866	human	ensembl	74_37	+1	known	missense	c.2705	p.F902C	1.000	pfam_DUF2451_C	pfam_Vacuolar_sorting-assoc_54,pfam_DUF2451_C	-	no_errors	CCDC132	HGNC	ENSG00000004766	tier1	-	-	66	0	0.00	31	46	59.74
FLJ36000	0	genome.wustl.edu	37	17	21911266	21911267	+	RNA	INS	-	-	TGTGTG			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	17	21911266	21911267	-	TGTGTG	INS	FLJ36000	ENST00000581223	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004:0.024	-	-	-	no_errors	RP11-744K17.9	Clone_based_vega_gene	ENSG00000266795	tier1			NA	NA	NA	NA	NA	NA
CWH43	0	genome.wustl.edu	37	4	49005809	49005809	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	4	49005809	49005809	G	C	SNP	CWH43	ENST00000226432	human	ensembl	74_37	+1	known	missense	c.860	p.G287A	0.574	NULL	superfamily_Endo/exonuclease/phosphatase	-	no_errors	CWH43	HGNC	ENSG00000109182	tier1	-	-	36	0	0.00	1	16	94.12
RNF213	0	genome.wustl.edu	37	17	78313806	78313806	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	17	78313806	78313806	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	missense	c.5639	p.R1880H	1.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	tier1	-	-	26	0	0.00	2	32	94.12
TRDN	0	genome.wustl.edu	37	6	123786032	123786033	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	6	123786032	123786033	-	A	INS	TRDN	ENST00000546248	human	ensembl	74_37	-1	known	frame_shift_ins	c.890_889	p.S297fs	0.000:0.000	NULL	pfam_Asp-B-hydro/Triadin_dom	-	no_errors	TRDN	HGNC	ENSG00000186439	tier1			32	0	0.00	20	2	9.09
LRIG2	0	genome.wustl.edu	37	1	113637357	113637357	+	Silent	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	113637357	113637357	C	T	SNP	LRIG2	ENST00000361127	human	ensembl	74_37	+1	known	silent	c.783	p.G261	0.987	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LRIG2	HGNC	ENSG00000198799	tier1	-	-	98	0	0.00	27	4	12.90
HERC2	0	genome.wustl.edu	37	15	28391408	28391408	+	Silent	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	15	28391408	28391408	G	T	SNP	HERC2	ENST00000261609	human	ensembl	74_37	-1	known	silent	c.10983	p.V3661	1.000	superfamily_CUB_dom	pfam_Reg_chr_condens,pfam_HECT,pfam_CPH_domain,pfam_Mib_Herc2,pfam_Cyt_B5-like_heme/steroid-bd,pfam_Znf_ZZ,pfam_APC_su10/DOC_dom,superfamily_RCC1/BLIP-II,superfamily_HECT,superfamily_Galactose-bd-like,superfamily_Cyt_B5-like_heme/steroid-bd,superfamily_UBA-like,superfamily_CUB_dom,smart_Beta-propeller_rpt_TECPR,smart_Znf_ZZ,smart_HECT,pfscan_HECT,pfscan_Znf_ZZ,pfscan_Reg_chr_condens,pfscan_Cyt_B5-like_heme/steroid-bd,prints_Reg_chr_condens	-	no_errors	HERC2	HGNC	ENSG00000128731	tier1	-	-	35	0	0.00	42	4	8.70
TESK2	0	genome.wustl.edu	37	1	45809610	45809610	+	RNA	DEL	A	A	-			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	45809610	45809610	A	-	DEL	TESK2	ENST00000486676	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	TESK2	HGNC	ENSG00000070759	tier1			52	0	0.00	42	5	10.64
APC	0	genome.wustl.edu	37	5	112175084	112175084	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	5	112175084	112175084	G	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	nonsense	c.3793	p.E1265*	1.000	pfam_APC_Cys-rich_rpt	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	tier1	-	-	31	0	0.00	2	22	91.67
OR10J5	0	genome.wustl.edu	37	1	159505683	159505683	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	159505683	159505683	G	T	SNP	OR10J5	ENST00000334857	human	ensembl	74_37	-1	known	missense	c.115	p.L39M	0.004	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10J5	HGNC	ENSG00000184155	tier1	-	-	48	0	0.00	43	4	8.51
C2orf69	0	genome.wustl.edu	37	2	200820505	200820505	+	RNA	DEL	T	T	-			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	2	200820505	200820505	T	-	DEL	C2orf69	ENST00000491721	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.987	-	-	-	no_errors	C2orf69	HGNC	ENSG00000178074	tier1			35	0	0.00	10	9	47.37
HNRNPR	0	genome.wustl.edu	37	1	23636875	23636875	+	RNA	DEL	T	T	-			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	23636875	23636875	T	-	DEL	HNRNPR	ENST00000476660	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.936	-	-	-	no_errors	HNRNPR	HGNC	ENSG00000125944	tier1			43	0	0.00	38	6	13.64
MXRA5	0	genome.wustl.edu	37	X	3236006	3236006	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	X	3236006	3236006	C	G	SNP	MXRA5	ENST00000217939	human	ensembl	74_37	-1	known	missense	c.5716	p.E1906Q	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MXRA5	HGNC	ENSG00000101825	tier1	-	-	32	0	0.00	54	12	18.18
LOC101927209	0	genome.wustl.edu	37	1	142621208	142621208	+	RNA	SNP	G	G	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	142621208	142621208	G	A	SNP	LOC101927209	ENST00000412092	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	RP11-417J8.3	Clone_based_vega_gene	ENSG00000230880	tier1	rs201624115	-	75	0	0.00	79	10	11.24
EML6	0	genome.wustl.edu	37	2	55184997	55184997	+	Silent	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	2	55184997	55184997	C	T	SNP	EML6	ENST00000356458	human	ensembl	74_37	+1	novel	silent	c.4557	p.D1519	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_HELP,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EML6	HGNC	ENSG00000214595	tier1	-	-	80	0	0.00	58	15	20.55
SLC9C2	0	genome.wustl.edu	37	1	173526547	173526547	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	173526547	173526547	C	T	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.1147	p.V383I	0.000	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753	tier1	-	-	84	0	0.00	51	23	30.67
CPA1	0	genome.wustl.edu	37	7	130022006	130022006	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	7	130022006	130022006	C	A	SNP	CPA1	ENST00000011292	human	ensembl	74_37	+1	known	missense	c.439	p.Q147K	0.696	pfam_Peptidase_M14,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Prot_inh_M14A,superfamily_Prot_inh_propept,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPA1	HGNC	ENSG00000091704	tier1	-	-	37	0	0.00	45	4	8.16
GYPC	0	genome.wustl.edu	37	2	127453545	127453545	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	2	127453545	127453545	G	A	SNP	GYPC	ENST00000259254	human	ensembl	74_37	+1	known	missense	c.214	p.V72I	0.965	NULL	smart_Neurexin-like	-	no_errors	GYPC	HGNC	ENSG00000136732	tier1	rs200879714	-	24	0	0.00	9	18	64.29
RPL7L1	0	genome.wustl.edu	37	6	42851403	42851403	+	RNA	SNP	T	T	G			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	6	42851403	42851403	T	G	SNP	RPL7L1	ENST00000487619	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.015	-	-	-	no_errors	RPL7L1	HGNC	ENSG00000146223	tier1	-	-	70	0	0.00	58	35	37.63
C1orf61	0	genome.wustl.edu	37	1	156386395	156386395	+	RNA	SNP	C	C	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	156386395	156386395	C	A	SNP	C1orf61	ENST00000462458	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C1orf61	HGNC	ENSG00000125462	tier1	-	-	13	0	0.00	12	6	33.33
KCNA4	0	genome.wustl.edu	37	11	30033192	30033192	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	11	30033192	30033192	C	A	SNP	KCNA4	ENST00000328224	human	ensembl	74_37	-1	known	missense	c.1034	p.G345V	0.129	NULL	pfam_K_chnl_volt-dep_Kv1.4_TID,pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_2pore_dom_K_chnl_dom,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.4,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA4	HGNC	ENSG00000182255	tier1	-	-	60	0	0.00	3	23	88.46
TCTE3	0	genome.wustl.edu	37	6	170144314	170144314	+	Silent	SNP	C	C	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	6	170144314	170144314	C	A	SNP	TCTE3	ENST00000366774	human	ensembl	74_37	-1	known	silent	c.177	p.V59	0.329	NULL	pfam_Tctex	-	no_errors	TCTE3	HGNC	ENSG00000184786	tier1	-	-	39	0	0.00	34	4	10.53
NUMA1	0	genome.wustl.edu	37	11	71728741	71728741	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	11	71728741	71728741	G	T	SNP	NUMA1	ENST00000393695	human	ensembl	74_37	-1	known	missense	c.1111	p.Q371K	1.000	NULL	superfamily_Prefoldin	-	no_errors	NUMA1	HGNC	ENSG00000137497	tier1	-	-	47	0	0.00	39	4	9.30
TMEM132C	0	genome.wustl.edu	37	12	128899915	128899915	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	12	128899915	128899915	G	T	SNP	TMEM132C	ENST00000435159	human	ensembl	74_37	+1	known	missense	c.724	p.A242S	0.004	NULL	NULL	-	no_errors	TMEM132C	HGNC	ENSG00000181234	tier1	-	-	75	0	0.00	43	4	8.51
ENSG00000183822	0	genome.wustl.edu	37	22	37266336	37266336	+	RNA	SNP	G	G	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	22	37266336	37266336	G	T	SNP	ENSG00000183822	ENST00000330602	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CTA-833B7.2	Clone_based_vega_gene	ENSG00000183822	tier1	-	-	38	0	0.00	56	5	8.20
B4GALNT1	0	genome.wustl.edu	37	12	58022875	58022875	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	12	58022875	58022875	G	A	SNP	B4GALNT1	ENST00000341156	human	ensembl	74_37	-1	known	missense	c.767	p.P256L	0.038	pirsf_GM2_synthase	pfam_Glyco_trans_2,pirsf_GM2_synthase	-	no_errors	B4GALNT1	HGNC	ENSG00000135454	tier1	rs200510000	-	69	0	0.00	691	142	17.03
C4BPB	0	genome.wustl.edu	37	1	207271592	207271592	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	207271592	207271592	G	C	SNP	C4BPB	ENST00000243611	human	ensembl	74_37	+1	known	missense	c.601	p.E201Q	0.001	NULL	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	C4BPB	HGNC	ENSG00000123843	tier1	-	-	83	0	0.00	32	57	64.04
PRODH2	0	genome.wustl.edu	37	19	36297635	36297635	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	19	36297635	36297635	C	T	SNP	PRODH2	ENST00000301175	human	ensembl	74_37	-1	known	nonsense	c.1004	p.W335*	1.000	pfam_Proline_DH	pfam_Proline_DH	-	no_errors	PRODH2	HGNC	ENSG00000250799	tier1	-	-	83	0	0.00	1239	164	11.66
R3HCC1	0	genome.wustl.edu	37	8	23152352	23152352	+	Silent	SNP	A	A	G			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	8	23152352	23152352	A	G	SNP	R3HCC1	ENST00000411463	human	ensembl	74_37	+1	known	silent	c.1287	p.S429	0.105	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HCC1	HGNC	ENSG00000104679	tier1	-	-	51	0	0.00	32	4	11.11
CD101	0	genome.wustl.edu	37	1	117559985	117559985	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	1	117559985	117559985	C	T	SNP	CD101	ENST00000256652	human	ensembl	74_37	+1	known	missense	c.1502	p.T501I	0.001	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD101	HGNC	ENSG00000134256	tier1	-	-	36	0	0.00	19	3	13.64
FAM209A	0	genome.wustl.edu	37	20	55093337	55093337	+	RNA	SNP	C	C	T			TCGA-DX-A7EI-01A-11D-A33E-09	TCGA-DX-A7EI-10A-01D-A33H-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	be26a68a-6f7b-4f67-94ba-2def13816208	ececb6a0-c3f5-4daa-84c1-d752cacc49e7	20	55093337	55093337	C	T	SNP	FAM209A	ENST00000481560	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM209A	HGNC	ENSG00000124103	tier1	-	-	39	0	0.00	38	39	50.65
