Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
RAET1K	0	genome.wustl.edu	37	6	150322199	150322199	+	RNA	SNP	A	A	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	6	150322199	150322199	A	T	SNP	RAET1K	ENST00000533735	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.068	-	-	-	no_errors	RAET1K	HGNC	ENSG00000218358	tier1	-	-	32	0	0.00	21	3	12.00
CYLC2	0	genome.wustl.edu	37	9	105767654	105767654	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	9	105767654	105767654	A	-	DEL	CYLC2	ENST00000374798	human	ensembl	74_37	+1	known	frame_shift_del	c.741	p.D250fs	0.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	tier1			29	0	0.00	44	4	8.33
TM4SF1	0	genome.wustl.edu	37	3	149093481	149093482	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	3	149093481	149093482	CA	-	DEL	TM4SF1	ENST00000305366	human	ensembl	74_37	-1	known	frame_shift_del	c.253_252	p.C84fs	1.000:0.919	pfam_L6_membrane	pfam_L6_membrane	-	no_errors	TM4SF1	HGNC	ENSG00000169908	tier1			32	0	0.00	10	18	64.29
ENSG00000254551	0	genome.wustl.edu	37	11	82921150	82921151	+	Splice_Site	INS	-	-	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	11	82921150	82921151	-	A	INS	ENSG00000254551	ENST00000531869	human	ensembl	74_37	-1	known	splice_site_ins	c.NULL	NULL	0.001:0.000	-	-	-	no_errors	RP11-727A23.7	Clone_based_vega_gene	ENSG00000254551	tier1			33	0	0.00	40	6	13.04
PLEKHA7	0	genome.wustl.edu	37	11	16863266	16863266	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	11	16863266	16863266	C	T	SNP	PLEKHA7	ENST00000448080	human	ensembl	74_37	-1	known	missense	c.700	p.V234M	0.998	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,pfam_WW_dom,superfamily_WW_dom,smart_WW_dom,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_WW_dom	-	no_errors	PLEKHA7	HGNC	ENSG00000166689	tier1	-	-	32	0	0.00	40	4	9.09
CA8	0	genome.wustl.edu	37	8	61178601	61178601	+	Silent	SNP	C	C	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	8	61178601	61178601	C	T	SNP	CA8	ENST00000317995	human	ensembl	74_37	-1	known	silent	c.300	p.S100	0.091	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA8	HGNC	ENSG00000178538	tier1	-	-	145	0	0.00	130	13	9.09
ENSG00000255200	0	genome.wustl.edu	37	11	64943049	64943050	+	RNA	INS	-	-	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	11	64943049	64943050	-	T	INS	ENSG00000255200	ENST00000534819	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.991:0.969	-	-	-	no_errors	AP003068.18	Clone_based_vega_gene	ENSG00000255200	tier1			9	0	0.00	7	2	22.22
FAM131B	0	genome.wustl.edu	37	7	143056847	143056847	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	7	143056847	143056847	T	C	SNP	FAM131B	ENST00000443739	human	ensembl	74_37	-1	known	missense	c.152	p.D51G	1.000	NULL	NULL	-	no_errors	FAM131B	HGNC	ENSG00000159784	tier1	-	-	52	0	0.00	32	4	11.11
CENPF	0	genome.wustl.edu	37	1	214815232	214815232	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	1	214815232	214815232	A	G	SNP	CENPF	ENST00000366955	human	ensembl	74_37	+1	known	missense	c.3551	p.E1184G	0.046	NULL	pfam_Centromere_CenpF_N,pfam_Centromere_CenpF_leu-rich_rpt,pfam_CenpF/LEK1_Rb-prot-bd	-	no_errors	CENPF	HGNC	ENSG00000117724	tier1	-	-	39	0	0.00	19	8	29.63
OAS2	0	genome.wustl.edu	37	12	113425106	113425106	+	Silent	SNP	C	C	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	12	113425106	113425106	C	T	SNP	OAS2	ENST00000342315	human	ensembl	74_37	+1	known	silent	c.441	p.N147	0.389	NULL	pfam_2-5-oligoAdlate_synth_1_dom2/C,pfam_Nucleotidyltransferase,pfscan_2-5-oligoadenylate_synth_N	-	no_errors	OAS2	HGNC	ENSG00000111335	tier1	-	-	45	0	0.00	36	26	41.94
PPP1R26	0	genome.wustl.edu	37	9	138377272	138377272	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	9	138377272	138377272	A	G	SNP	PPP1R26	ENST00000356818	human	ensembl	74_37	+1	known	missense	c.916	p.R306G	0.000	NULL	NULL	-	no_errors	PPP1R26	HGNC	ENSG00000196422	tier1	rs141353268	-	42	0	0.00	35	4	10.26
NLRP9	0	genome.wustl.edu	37	19	56223940	56223940	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	19	56223940	56223940	G	T	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.2518	p.L840I	0.001	smart_Leu-rich_rpt_RNase_inh_sub-typ	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	tier1	-	-	46	0	0.00	35	4	10.26
PRIM2	0	genome.wustl.edu	37	6	57512787	57512788	+	RNA	INS	-	-	CACCAAGGC			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	6	57512787	57512788	-	CACCAAGGC	INS	PRIM2	ENST00000389488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.057:0.034	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	tier1			NA	NA	NA	NA	NA	NA
PNLIPRP2	0	genome.wustl.edu	37	10	118401628	118401628	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	10	118401628	118401628	G	A	SNP	PNLIPRP2	ENST00000537242	human	ensembl	74_37	+1	known	missense	c.1178	p.G393E	1.000	pirsf_Lipoprotein_lipase_LIPH,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pirsf_Lipoprotein_lipase_LIPH,pfam_Lipase_N,pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,prints_Lipase_panc,prints_Lipase,pfscan_PLAT/LH2_dom	-	no_errors	PNLIPRP2	HGNC	ENSG00000165862	tier1	-	-	93	0	0.00	48	29	37.66
ENSG00000233030	0	genome.wustl.edu	37	1	149764430	149764434	+	RNA	DEL	CGAGT	CGAGT	-			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	CGAGT	CGAGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	1	149764430	149764434	CGAGT	-	DEL	ENSG00000233030	ENST00000428289	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	RP11-196G18.3	Clone_based_vega_gene	ENSG00000233030	tier1			NA	NA	NA	NA	NA	NA
DPP3	0	genome.wustl.edu	37	11	66249827	66249862	+	In_Frame_Del	DEL	CTCCCCTGAGGCCCCCTACATCTATGCTCTGCTCAG	CTCCCCTGAGGCCCCCTACATCTATGCTCTGCTCAG	-			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	CTCCCCTGAGGCCCCCTACATCTATGCTCTGCTCAG	CTCCCCTGAGGCCCCCTACATCTATGCTCTGCTCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	11	66249827	66249862	CTCCCCTGAGGCCCCCTACATCTATGCTCTGCTCAG	-	DEL	DPP3	ENST00000360510	human	ensembl	74_37	+1	known	in_frame_del	c.156_191	p.SPEAPYIYALLS53in_frame_del	0.253:0.995:0.998:0.972:0.992:0.976:0.006:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.854:0.865:0.996:1.000:1.000:1.000:1.000:1.000:0.999:0.962:0.999:1.000:0.997:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pirsf_Dipeptidyl-peptase3	pirsf_Dipeptidyl-peptase3	-	no_errors	DPP3	HGNC	ENSG00000254986	tier1			NA	NA	NA	NA	NA	NA
ETFB	0	genome.wustl.edu	37	19	51857627	51857627	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	19	51857627	51857627	G	A	SNP	ETFB	ENST00000354232	human	ensembl	74_37	-1	known	missense	c.266	p.A89V	0.000	NULL	pfam_ETF_a/b_N,smart_ETF_a/b_N	-	no_errors	ETFB	HGNC	ENSG00000105379	tier1	rs143544475	-	46	0	0.00	54	9	14.29
DNAH12	0	genome.wustl.edu	37	3	57431127	57431127	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	3	57431127	57431127	G	A	SNP	DNAH12	ENST00000351747	human	ensembl	74_37	-1	known	missense	c.4130	p.A1377V	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	tier1	-	-	59	0	0.00	45	4	8.16
FAN1	0	genome.wustl.edu	37	15	31217365	31217365	+	Silent	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	15	31217365	31217365	G	A	SNP	FAN1	ENST00000362065	human	ensembl	74_37	+1	known	silent	c.2208	p.P736	0.000	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690	tier1	rs141117593	-	67	0	0.00	75	7	8.43
SORCS3	0	genome.wustl.edu	37	10	106927044	106927044	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	10	106927044	106927044	T	A	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	missense	c.1838	p.F613Y	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	tier1	-	-	42	0	0.00	43	6	12.24
MGAT5	0	genome.wustl.edu	37	2	135160626	135160626	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	2	135160626	135160626	G	A	SNP	MGAT5	ENST00000281923	human	ensembl	74_37	+1	known	missense	c.1448	p.S483N	1.000	NULL	NULL	-	no_errors	MGAT5	HGNC	ENSG00000152127	tier1	-	-	35	0	0.00	35	4	10.26
ENSG00000243107	0	genome.wustl.edu	37	7	91829672	91829672	+	RNA	DEL	T	T	-			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	7	91829672	91829672	T	-	DEL	ENSG00000243107	ENST00000414227	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.076	-	-	-	no_errors	AC000120.7	Clone_based_vega_gene	ENSG00000243107	tier1			30	0	0.00	25	10	28.57
TERF1	0	genome.wustl.edu	37	8	73921283	73921284	+	In_Frame_Ins	INS	-	-	GAGGAG			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	8	73921283	73921284	-	GAGGAG	INS	TERF1	ENST00000276603	human	ensembl	74_37	+1	known	in_frame_ins	c.162_163	p.58in_frame_insEE	0.000:0.121	pirsf_Telomere_repeat-bd-1/2	pfam_Telomere_rpt-bd_fac_dimer_dom,pfam_SANT/Myb,superfamily_Telomere_rpt-bd_fac_dimer_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pirsf_Telomere_repeat-bd-1/2,pfscan_Myb-like_dom	-	no_errors	TERF1	HGNC	ENSG00000147601	tier1			NA	NA	NA	NA	NA	NA
MYO15B	0	genome.wustl.edu	37	17	73586255	73586255	+	RNA	SNP	C	C	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	17	73586255	73586255	C	T	SNP	MYO15B	ENST00000578382	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	MYO15B	HGNC	ENSG00000266714	tier1	-	-	38	0	0.00	26	10	27.78
ARHGAP29	0	genome.wustl.edu	37	1	94643144	94643144	+	RNA	DEL	T	T	-			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	1	94643144	94643144	T	-	DEL	ARHGAP29	ENST00000482481	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ARHGAP29	HGNC	ENSG00000137962	tier1			33	0	0.00	27	5	15.62
PTPRK	0	genome.wustl.edu	37	6	128505867	128505867	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	6	128505867	128505867	G	A	SNP	PTPRK	ENST00000368227	human	ensembl	74_37	-1	known	missense	c.872	p.P291L	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRK	HGNC	ENSG00000152894	tier1	-	-	73	0	0.00	78	7	8.24
TPRKB	0	genome.wustl.edu	37	2	73957880	73957881	+	RNA	INS	-	-	AA			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	2	73957880	73957881	-	AA	INS	TPRKB	ENST00000485758	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.004	-	-	-	no_errors	TPRKB	HGNC	ENSG00000144034	tier1			18	0	0.00	19	2	9.52
ANKFY1	0	genome.wustl.edu	37	17	4088163	4088163	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	17	4088163	4088163	G	A	SNP	ANKFY1	ENST00000570535	human	ensembl	74_37	-1	known	missense	c.1775	p.A592V	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Znf_FYVE,pfam_BTB_POZ,superfamily_Ankyrin_rpt-contain_dom,superfamily_BTB/POZ_fold,superfamily_Znf_FYVE_PHD,smart_BTB/POZ-like,smart_Ankyrin_rpt,smart_Znf_FYVE,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Znf_FYVE-rel,prints_Ankyrin_rpt	-	no_errors	ANKFY1	HGNC	ENSG00000185722	tier1	-	-	61	0	0.00	23	4	14.81
OR1I1	0	genome.wustl.edu	37	19	15198749	15198749	+	Silent	SNP	C	C	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	19	15198749	15198749	C	T	SNP	OR1I1	ENST00000209540	human	ensembl	74_37	+1	known	silent	c.873	p.S291	1.000	prints_Olfact_rcpt,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR1I1	HGNC	ENSG00000094661	tier1	-	-	45	0	0.00	55	5	8.33
AP2M1	0	genome.wustl.edu	37	3	183901569	183901569	+	RNA	SNP	G	G	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	3	183901569	183901569	G	T	SNP	AP2M1	ENST00000461733	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	AP2M1	HGNC	ENSG00000161203	tier1	-	-	32	0	0.00	19	4	17.39
CSMD2	0	genome.wustl.edu	37	1	34191064	34191064	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	1	34191064	34191064	C	T	SNP	CSMD2	ENST00000373381	human	ensembl	74_37	-1	known	missense	c.2581	p.V861I	0.994	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	tier1	-	-	61	0	0.00	57	36	38.71
ENSG00000221235	0	genome.wustl.edu	37	4	151560934	151560943	+	RNA	DEL	TGTGTGTGTG	TGTGTGTGTG	-			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	TGTGTGTGTG	TGTGTGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	4	151560934	151560943	TGTGTGTGTG	-	DEL	ENSG00000221235	ENST00000408308	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AC110813.1	Clone_based_ensembl_gene	ENSG00000221235	tier1			NA	NA	NA	NA	NA	NA
GPR114	0	genome.wustl.edu	37	16	57602029	57602029	+	Silent	SNP	A	A	G			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	16	57602029	57602029	A	G	SNP	GPR114	ENST00000340339	human	ensembl	74_37	+1	known	silent	c.1083	p.L361	0.994	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_orphan_rcpt_GPR56	-	no_errors	GPR114	HGNC	ENSG00000159618	tier1	-	-	32	0	0.00	22	4	15.38
HMCN1	0	genome.wustl.edu	37	1	185834938	185834938	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	1	185834938	185834938	A	C	SNP	HMCN1	ENST00000271588	human	ensembl	74_37	+1	known	missense	c.564	p.E188D	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd_dom,pfam_Thrombospondin_1_rpt,superfamily_GFP,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt_N_dom,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like_dom	-	no_errors	HMCN1	HGNC	ENSG00000143341	tier1	-	-	129	0	0.00	168	21	11.11
LOC101927345	0	genome.wustl.edu	37	1	143378564	143378564	+	RNA	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	1	143378564	143378564	G	A	SNP	LOC101927345	ENST00000428624	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	RP11-435B5.5	Clone_based_vega_gene	ENSG00000238261	tier1	rs138693387	-	9	0	0.00	6	4	40.00
DENND4C	0	genome.wustl.edu	37	9	19296118	19296118	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	9	19296118	19296118	A	G	SNP	DENND4C	ENST00000602925	human	ensembl	74_37	+1	known	missense	c.914	p.K305R	1.000	NULL	pfam_DENN_dom,pfam_dDENN_dom,pfam_uDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	DENND4C	HGNC	ENSG00000137145	tier1	-	-	83	0	0.00	66	18	21.43
NXT2	0	genome.wustl.edu	37	X	108781279	108781279	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	X	108781279	108781279	T	A	SNP	NXT2	ENST00000218004	human	ensembl	74_37	+1	known	missense	c.186	p.F62L	1.000	NULL	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXT2	HGNC	ENSG00000101888	tier1	-	-	86	0	0.00	64	63	49.61
IL27	0	genome.wustl.edu	37	16	28515297	28515297	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	16	28515297	28515297	G	A	SNP	IL27	ENST00000356897	human	ensembl	74_37	-1	known	missense	c.106	p.P36S	0.951	NULL	superfamily_4_helix_cytokine-like_core	-	no_errors	IL27	HGNC	ENSG00000197272	tier1	-	-	98	0	0.00	72	12	14.29
ENSG00000196589	0	genome.wustl.edu	37	19	7019354	7019354	+	RNA	SNP	G	G	A			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	19	7019354	7019354	G	A	SNP	ENSG00000196589	ENST00000358469	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	CTB-25J19.1	Clone_based_vega_gene	ENSG00000196589	tier1	-	-	31	0	0.00	19	13	40.62
PHC3	0	genome.wustl.edu	37	3	169846633	169846633	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	3	169846633	169846633	G	T	SNP	PHC3	ENST00000495893	human	ensembl	74_37	-1	known	missense	c.1627	p.L543M	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM,pfscan_Znf_FCS	-	no_errors	PHC3	HGNC	ENSG00000173889	tier1	-	-	56	0	0.00	34	3	8.11
LPHN3	0	genome.wustl.edu	37	4	62363037	62363037	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	4	62363037	62363037	T	C	SNP	LPHN3	ENST00000507625	human	ensembl	74_37	+1	known	missense	c.26	p.F9S	0.999	NULL	pfam_GPCR_2_latrophilin_rcpt_C,pfam_Olfac-like,pfam_DUF3497,pfam_GPCR_2_secretin-like,pfam_Lectin_gal-bd_dom,pfam_GPS_dom,pfam_GPCR_2_extracellular_dom,smart_Olfac-like,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_Lectin_gal-bd_dom,pfscan_Olfac-like,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_latrophilin,prints_GPCR_2_secretin-like	-	no_errors	LPHN3	HGNC	ENSG00000150471	tier1	-	-	59	0	0.00	42	4	8.70
CHD3	0	genome.wustl.edu	37	17	7802799	7802799	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	17	7802799	7802799	G	T	SNP	CHD3	ENST00000330494	human	ensembl	74_37	+1	known	nonsense	c.2482	p.E828*	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD3	HGNC	ENSG00000170004	tier1	-	-	42	0	0.00	26	3	10.34
ZDHHC8P1	0	genome.wustl.edu	37	22	23733545	23733555	+	RNA	DEL	CCTTTTTTTTT	CCTTTTTTTTT	-			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	CCTTTTTTTTT	CCTTTTTTTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	22	23733545	23733555	CCTTTTTTTTT	-	DEL	ZDHHC8P1	ENST00000255890	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009:0.003:0.003:0.002:0.001:0.001:0.001:0.000:0.000:0.012:0.011	-	-	-	no_errors	ZDHHC8P1	HGNC	ENSG00000133519	tier1			NA	NA	NA	NA	NA	NA
TARDBP	0	genome.wustl.edu	37	1	11084334	11084334	+	RNA	DEL	T	T	-			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	1	11084334	11084334	T	-	DEL	TARDBP	ENST00000480464	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.289	-	-	-	no_errors	TARDBP	HGNC	ENSG00000120948	tier1			10	0	0.00	19	5	20.83
ENSG00000272769	0	genome.wustl.edu	37	2	133104171	133104172	+	RNA	INS	-	-	TT			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	2	133104171	133104172	-	TT	INS	ENSG00000272769	ENST00000608279	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.046:0.010	-	-	-	no_errors	RP11-725P16.2	Clone_based_vega_gene	ENSG00000272769	tier1			11	0	0.00	19	3	13.64
CTAGE4	0	genome.wustl.edu	37	7	143882454	143882454	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	7	143882454	143882454	A	G	SNP	CTAGE4	ENST00000486333	human	ensembl	74_37	+1	known	missense	c.1858	p.T620A	0.063	NULL	superfamily_tRNA-bd_arm	-	no_errors	CTAGE4	HGNC	ENSG00000225932	tier1	rs199890465	-	11	0	0.00	23	11	32.35
DPP3	0	genome.wustl.edu	37	11	66249858	66249859	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	11	66249858	66249859	-	T	INS	DPP3	ENST00000360510	human	ensembl	74_37	+1	known	frame_shift_ins	c.187_188	p.S64fs	1.000:1.000	pirsf_Dipeptidyl-peptase3	pirsf_Dipeptidyl-peptase3	-	no_errors	DPP3	HGNC	ENSG00000254986	tier1			39	0	0.00	14	2	12.50
F8	0	genome.wustl.edu	37	X	154158427	154158428	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-A7EO-01A-11D-A36J-09	TCGA-DX-A7EO-10A-01D-A36M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	47ab4d85-5769-476e-ac23-1784e08c7f9a	2ffcc5f0-8943-482f-ac54-c8491c0d4a0f	X	154158427	154158428	-	T	INS	F8	ENST00000360256	human	ensembl	74_37	-1	known	frame_shift_ins	c.3638_3637	p.I1213fs	0.011:0.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	tier1			37	0	0.00	39	5	11.36
