Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CCL20	0	genome.wustl.edu	37	2	228680154	228680154	+	RNA	DEL	T	T	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	228680154	228680154	T	-	DEL	CCL20	ENST00000473642	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	CCL20	HGNC	ENSG00000115009	tier1			16	0	0.00	20	5	20.00
KLHL33	0	genome.wustl.edu	37	14	20898562	20898562	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	14	20898562	20898562	C	G	SNP	KLHL33	ENST00000344581	human	ensembl	74_37	-1	known	missense	c.273	p.W91C	0.954	pfam_BACK,smart_BACK	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,superfamily_BTB/POZ_fold,smart_BACK,smart_Kelch_1	-	no_errors	KLHL33	HGNC	ENSG00000185271	tier1	-	-	24	0	0.00	34	7	17.07
DOCK11	0	genome.wustl.edu	37	X	117744376	117744376	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	X	117744376	117744376	C	A	SNP	DOCK11	ENST00000276202	human	ensembl	74_37	+1	known	missense	c.3091	p.L1031M	0.998	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK11	HGNC	ENSG00000147251	tier1	-	-	59	0	0.00	44	6	12.00
ENSG00000251793	0	genome.wustl.edu	37	6	16148585	16148586	+	RNA	INS	-	-	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	6	16148585	16148586	-	T	INS	ENSG00000251793	ENST00000515984	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.008:0.031	-	-	-	no_errors	U3	RFAM	ENSG00000251793	tier1			28	0	0.00	24	4	14.29
ENSG00000232274	0	genome.wustl.edu	37	1	143210557	143210557	+	RNA	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	143210557	143210557	A	G	SNP	ENSG00000232274	ENST00000412204	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.012	-	-	-	no_errors	RP11-782C8.2	Clone_based_vega_gene	ENSG00000232274	tier1	-	-	34	0	0.00	24	4	14.29
LRRK2	0	genome.wustl.edu	37	12	40704301	40704301	+	Silent	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	40704301	40704301	C	T	SNP	LRRK2	ENST00000298910	human	ensembl	74_37	+1	known	silent	c.4386	p.R1462	0.996	superfamily_P-loop_NTPase,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_MIRO-like,pfam_Small_GTPase,pfam_Leu-rich_rpt,pfam_Small_GTPase_ARF/SAR,superfamily_Kinase-like_dom,superfamily_P-loop_NTPase,superfamily_ARM-type_fold,superfamily_WD40_repeat_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Small_GTPase_Rab_type,smart_Tyr_kinase_cat_dom,smart_Ser/Thr_dual-sp_kinase_dom,prints_Small_GTPase,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,tigrfam_Small_GTP-bd_dom	-	no_errors	LRRK2	HGNC	ENSG00000188906	tier1	-	-	30	0	0.00	72	9	11.11
BCL11B	0	genome.wustl.edu	37	14	99724166	99724166	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	14	99724166	99724166	G	T	SNP	BCL11B	ENST00000357195	human	ensembl	74_37	-1	known	missense	c.69	p.D23E	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	BCL11B	HGNC	ENSG00000127152	tier1	-	-	34	0	0.00	43	4	8.51
TAL1	0	genome.wustl.edu	37	1	47685823	47685823	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	47685823	47685823	G	T	SNP	TAL1	ENST00000371883	human	ensembl	74_37	-1	known	missense	c.571	p.R191S	1.000	pfam_bHLH_dom,superfamily_bHLH_dom,pfscan_bHLH_dom	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	TAL1	HGNC	ENSG00000162367	tier1	-	-	54	0	0.00	41	4	8.89
DNAH7	0	genome.wustl.edu	37	2	196771666	196771666	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	196771666	196771666	G	T	SNP	DNAH7	ENST00000312428	human	ensembl	74_37	-1	known	missense	c.4172	p.S1391Y	1.000	superfamily_P-loop_NTPase,smart_AAA+_ATPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,superfamily_P-loop_NTPase,superfamily_Signal_recog_particle_SRP9/14,smart_AAA+_ATPase,pfscan_EF_hand_dom	-	no_errors	DNAH7	HGNC	ENSG00000118997	tier1	-	-	30	0	0.00	20	4	16.67
DSC3	0	genome.wustl.edu	37	18	28612217	28612217	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	18	28612217	28612217	C	T	SNP	DSC3	ENST00000360428	human	ensembl	74_37	-1	known	missense	c.95	p.C32Y	1.000	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin,prints_Cadherin/Desmocollin,prints_Desmosomal_cadherin	-	no_errors	DSC3	HGNC	ENSG00000134762	tier1	-	-	43	0	0.00	43	4	8.51
DYNC1I2	0	genome.wustl.edu	37	2	172602373	172602373	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	172602373	172602373	A	G	SNP	DYNC1I2	ENST00000397119	human	ensembl	74_37	+1	known	missense	c.1739	p.H580R	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I2	HGNC	ENSG00000077380	tier1	-	-	85	0	0.00	46	13	22.03
INCENP	0	genome.wustl.edu	37	11	61913137	61913137	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	11	61913137	61913137	A	-	DEL	INCENP	ENST00000394818	human	ensembl	74_37	+1	known	frame_shift_del	c.1873	p.K626fs	1.000	NULL	pfam_INCENP_N,pfam_Inner_centromere_prot_ARK-bd	-	no_errors	INCENP	HGNC	ENSG00000149503	tier1			41	0	0.00	16	3	15.79
NARFL	0	genome.wustl.edu	37	16	784146	784146	+	RNA	SNP	C	C	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	16	784146	784146	C	A	SNP	NARFL	ENST00000562862	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NARFL	HGNC	ENSG00000103245	tier1	-	-	40	0	0.00	43	4	8.51
PTPN3	0	genome.wustl.edu	37	9	112172683	112172683	+	Silent	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	9	112172683	112172683	C	T	SNP	PTPN3	ENST00000374541	human	ensembl	74_37	-1	known	silent	c.1326	p.E442	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_PDZ,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin_like,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPN3	HGNC	ENSG00000070159	tier1	-	-	51	0	0.00	32	75	70.09
EXTL2	0	genome.wustl.edu	37	1	101342367	101342367	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	101342367	101342367	C	T	SNP	EXTL2	ENST00000370114	human	ensembl	74_37	-1	known	missense	c.487	p.A163T	1.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a	-	no_errors	EXTL2	HGNC	ENSG00000162694	tier1	-	-	56	0	0.00	54	5	8.47
PTPRQ	0	genome.wustl.edu	37	12	81028739	81028739	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	81028739	81028739	G	T	SNP	PTPRQ	ENST00000266688	human	ensembl	74_37	+1	known	missense	c.5790	p.Q1930H	1.000	NULL	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRQ	HGNC	ENSG00000139304	tier1	-	-	29	0	0.00	22	3	12.00
TGM1	0	genome.wustl.edu	37	14	24723980	24723980	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	14	24723980	24723980	C	T	SNP	TGM1	ENST00000206765	human	ensembl	74_37	-1	known	missense	c.1978	p.V660M	1.000	pfam_Transglutaminase_C,superfamily_Transglutaminase_C	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM1	HGNC	ENSG00000092295	tier1	-	-	44	0	0.00	42	5	10.64
KDM2A	0	genome.wustl.edu	37	11	67013488	67013488	+	Silent	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	11	67013488	67013488	C	T	SNP	KDM2A	ENST00000529006	human	ensembl	74_37	+1	known	silent	c.1866	p.L622	0.997	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,pfscan_Znf_PHD-finger	pfam_Znf_CXXC,pfam_F-box_dom,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	tier1	-	-	48	0	0.00	25	10	28.57
ANGEL1	0	genome.wustl.edu	37	14	77275610	77275610	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	14	77275610	77275610	C	T	SNP	ANGEL1	ENST00000251089	human	ensembl	74_37	-1	known	nonsense	c.441	p.W147*	0.998	NULL	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	ANGEL1	HGNC	ENSG00000013523	tier1	-	-	23	0	0.00	13	4	23.53
ENSG00000264629	0	genome.wustl.edu	37	22	23077063	23077063	+	RNA	SNP	C	C	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	22	23077063	23077063	C	A	SNP	ENSG00000264629	ENST00000579613	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.050	-	-	-	no_errors	D87007.1	Clone_based_ensembl_gene	ENSG00000264629	tier1	-	-	46	0	0.00	25	4	13.79
C22orf34	0	genome.wustl.edu	37	22	50017914	50017914	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	22	50017914	50017914	G	T	SNP	C22orf34	ENST00000444628	human	ensembl	74_37	-1	known	missense	c.547	p.L183I	0.078	NULL	NULL	-	no_errors	C22orf34	HGNC	ENSG00000188511	tier1	-	-	32	0	0.00	31	4	11.43
DPY19L2P1	0	genome.wustl.edu	37	7	35131338	35131338	+	RNA	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	7	35131338	35131338	C	T	SNP	DPY19L2P1	ENST00000436258	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DPY19L2P1	HGNC	ENSG00000189212	tier1	-	-	21	0	0.00	18	6	25.00
SATB1	0	genome.wustl.edu	37	3	18390964	18390964	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	3	18390964	18390964	G	A	SNP	SATB1	ENST00000417717	human	ensembl	74_37	-1	known	nonsense	c.2086	p.Q696*	1.000	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Hmoeo_CUT,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Hmoeo_CUT	-	no_errors	SATB1	HGNC	ENSG00000182568	tier1	-	-	82	0	0.00	57	12	17.39
MAB21L3	0	genome.wustl.edu	37	1	116675980	116675980	+	Silent	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	116675980	116675980	G	A	SNP	MAB21L3	ENST00000369500	human	ensembl	74_37	+1	known	silent	c.1083	p.P361	0.628	NULL	pfam_Mab-21_dom	-	no_errors	MAB21L3	HGNC	ENSG00000173212	tier1	-	-	84	0	0.00	94	12	11.32
ENSG00000227175	0	genome.wustl.edu	37	10	13570579	13570584	+	RNA	DEL	GCGGCA	GCGGCA	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	GCGGCA	GCGGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	10	13570579	13570584	GCGGCA	-	DEL	ENSG00000227175	ENST00000438431	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.013:0.012:0.010:0.008:0.006:0.003	-	-	-	no_errors	RP11-214D15.2	Clone_based_vega_gene	ENSG00000227175	tier1			NA	NA	NA	NA	NA	NA
PSRC1	0	genome.wustl.edu	37	1	109823657	109823657	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	109823657	109823657	G	A	SNP	PSRC1	ENST00000409138	human	ensembl	74_37	-1	known	missense	c.736	p.P246S	0.000	NULL	NULL	-	no_errors	PSRC1	HGNC	ENSG00000134222	tier1	-	-	54	0	0.00	54	20	27.03
PABPC4	0	genome.wustl.edu	37	1	40030432	40030432	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	40030432	40030432	G	A	SNP	PABPC4	ENST00000372858	human	ensembl	74_37	-1	known	missense	c.1259	p.P420L	1.000	tigrfam_PABP_1234	pfam_RRM_dom,pfam_PABP_HYD,superfamily_PABP_HYD,smart_RRM_dom,smart_RRM_dom_euk,smart_PABP_HYD,pfscan_RRM_dom,tigrfam_PABP_1234	-	no_errors	PABPC4	HGNC	ENSG00000090621	tier1	-	-	42	0	0.00	33	8	19.51
EIF4A2	0	genome.wustl.edu	37	3	186504939	186504939	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	3	186504939	186504939	T	G	SNP	EIF4A2	ENST00000440191	human	ensembl	74_37	+1	known	missense	c.798	p.C266W	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	EIF4A2	HGNC	ENSG00000156976	tier1	-	-	95	0	0.00	65	12	15.58
PAQR5	0	genome.wustl.edu	37	15	69652383	69652383	+	RNA	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	15	69652383	69652383	C	T	SNP	PAQR5	ENST00000561027	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PAQR5	HGNC	ENSG00000137819	tier1	-	-	46	0	0.00	27	7	20.59
ST6GALNAC5	0	genome.wustl.edu	37	1	77528785	77528785	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	77528785	77528785	G	A	SNP	ST6GALNAC5	ENST00000477717	human	ensembl	74_37	+1	known	missense	c.905	p.R302Q	0.983	pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC5	HGNC	ENSG00000117069	tier1	-	-	89	0	0.00	57	18	24.00
TRO	0	genome.wustl.edu	37	X	54956774	54956774	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	X	54956774	54956774	A	G	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	missense	c.3617	p.N1206S	0.015	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	tier1	-	-	24	0	0.00	24	11	31.43
STAG3L5P-PVRIG2P-PILRB	0	genome.wustl.edu	37	7	99943558	99943558	+	RNA	SNP	T	T	C			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	7	99943558	99943558	T	C	SNP	STAG3L5P-PVRIG2P-PILRB	ENST00000310771	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	STAG3L5P-PVRIG2P-PILRB	HGNC	ENSG00000272752	tier1	rs2405445	-	21	0	0.00	19	6	24.00
LOC101929974	0	genome.wustl.edu	37	12	131649621	131649621	+	RNA	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	131649621	131649621	G	A	SNP	LOC101929974	ENST00000376678	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-638F5.1	Clone_based_vega_gene	ENSG00000204603	tier1	rs199500836	-	25	0	0.00	18	4	18.18
GPKOW	0	genome.wustl.edu	37	X	48973411	48973429	+	Frame_Shift_Del	DEL	CCTGCTGGGAGACAGGCCG	CCTGCTGGGAGACAGGCCG	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	CCTGCTGGGAGACAGGCCG	CCTGCTGGGAGACAGGCCG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	X	48973411	48973429	CCTGCTGGGAGACAGGCCG	-	DEL	GPKOW	ENST00000156109	human	ensembl	74_37	-1	known	frame_shift_del	c.886_868	p.R290fs	1.000:0.998:0.990:0.536:0.595:0.805:0.856:0.830:0.816:0.730:0.514:0.607:0.575:0.077:0.077:0.054:0.028:0.016:0.001	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394	tier1			NA	NA	NA	NA	NA	NA
POFUT2	0	genome.wustl.edu	37	21	46703407	46703407	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	21	46703407	46703407	G	T	SNP	POFUT2	ENST00000349485	human	ensembl	74_37	-1	known	missense	c.418	p.L140M	1.000	pfam_GDP-Fuc_O-FucTrfase	pfam_GDP-Fuc_O-FucTrfase,superfamily_DUF749	-	no_errors	POFUT2	HGNC	ENSG00000186866	tier1	-	-	55	0	0.00	28	4	12.50
PAN2	0	genome.wustl.edu	37	12	56722345	56722345	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	56722345	56722345	C	A	SNP	PAN2	ENST00000425394	human	ensembl	74_37	-1	known	missense	c.363	p.Q121H	1.000	superfamily_WD40_repeat_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19/C67,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19/C67	-	no_errors	PAN2	HGNC	ENSG00000135473	tier1	-	-	44	0	0.00	43	4	8.33
APOA5	0	genome.wustl.edu	37	11	116661095	116661095	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	11	116661095	116661095	G	A	SNP	APOA5	ENST00000227665	human	ensembl	74_37	-1	known	nonsense	c.850	p.R284*	0.960	pfam_ApoA1_A4_E	pfam_ApoA1_A4_E	-	no_errors	APOA5	HGNC	ENSG00000110243	tier1	-	-	40	0	0.00	36	12	25.00
TUBA4B	0	genome.wustl.edu	37	2	220118077	220118077	+	RNA	DEL	G	G	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	220118077	220118077	G	-	DEL	TUBA4B	ENST00000473885	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TUBA4B	HGNC	ENSG00000243910	tier1			14	0	0.00	13	4	23.53
BMP10	0	genome.wustl.edu	37	2	69093564	69093564	+	Silent	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	69093564	69093564	G	A	SNP	BMP10	ENST00000295379	human	ensembl	74_37	-1	known	silent	c.474	p.Y158	0.820	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	BMP10	HGNC	ENSG00000163217	tier1	-	-	52	0	0.00	29	3	9.38
LOC101929974	0	genome.wustl.edu	37	12	131649643	131649643	+	RNA	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	131649643	131649643	G	A	SNP	LOC101929974	ENST00000376678	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-638F5.1	Clone_based_vega_gene	ENSG00000204603	tier1	rs199649948	-	32	0	0.00	25	4	13.79
LINC00200	0	genome.wustl.edu	37	10	1205736	1205736	+	RNA	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	10	1205736	1205736	A	G	SNP	LINC00200	ENST00000425630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.155	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	tier1	rs60415666	-	22	0	0.00	22	5	18.52
CEP250	0	genome.wustl.edu	37	20	34055380	34055380	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	20	34055380	34055380	G	A	SNP	CEP250	ENST00000397527	human	ensembl	74_37	+1	known	missense	c.851	p.R284Q	1.000	NULL	superfamily_Prefoldin	-	no_errors	CEP250	HGNC	ENSG00000126001	tier1	rs139021763	-	21	0	0.00	23	4	14.81
CXADRP3	0	genome.wustl.edu	37	18	14478199	14478199	+	RNA	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	18	14478199	14478199	G	A	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766	tier1	-	-	62	0	0.00	44	11	20.00
GNAS	0	genome.wustl.edu	37	20	57430245	57430245	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	20	57430245	57430245	C	T	SNP	GNAS	ENST00000371100	human	ensembl	74_37	+1	putative	missense	c.1925	p.A642V	0.333	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su	-	no_errors	GNAS	HGNC	ENSG00000087460	tier1	-	-	45	0	0.00	53	5	8.62
VIT	0	genome.wustl.edu	37	2	36986282	36986282	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	36986282	36986282	G	T	SNP	VIT	ENST00000457137	human	ensembl	74_37	+1	known	missense	c.580	p.G194C	0.000	NULL	pfam_LCCL,superfamily_LCCL,smart_LCCL,pfscan_LCCL	-	no_errors	VIT	HGNC	ENSG00000205221	tier1	-	-	43	0	0.00	23	8	25.81
CEP164	0	genome.wustl.edu	37	11	117222648	117222648	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	11	117222648	117222648	A	-	DEL	CEP164	ENST00000278935	human	ensembl	74_37	+1	known	frame_shift_del	c.337	p.K116fs	1.000	NULL	superfamily_WW_dom,smart_WW_dom,pfscan_WW_dom	-	no_errors	CEP164	HGNC	ENSG00000110274	tier1			55	0	0.00	44	8	15.38
CCAR1	0	genome.wustl.edu	37	10	70531091	70531091	+	Silent	SNP	T	T	C			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	10	70531091	70531091	T	C	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	silent	c.2427	p.D809	0.932	NULL	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339	tier1	-	-	77	0	0.00	64	15	18.75
GLIPR1L1	0	genome.wustl.edu	37	12	75737700	75737700	+	Silent	SNP	C	C	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	75737700	75737700	C	G	SNP	GLIPR1L1	ENST00000378695	human	ensembl	74_37	+1	known	silent	c.402	p.V134	0.031	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_V5_allergen	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1,prints_V5_allergen	-	no_errors	GLIPR1L1	HGNC	ENSG00000173401	tier1	-	-	91	0	0.00	92	166	64.34
LOC101929974	0	genome.wustl.edu	37	12	131649622	131649622	+	RNA	SNP	C	C	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	131649622	131649622	C	A	SNP	LOC101929974	ENST00000376678	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-638F5.1	Clone_based_vega_gene	ENSG00000204603	tier1	rs200829826	-	26	0	0.00	18	4	18.18
HYDIN	0	genome.wustl.edu	37	16	71196449	71196449	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	16	71196449	71196449	T	A	SNP	HYDIN	ENST00000448089	human	ensembl	74_37	-1	known	missense	c.701	p.H234L	1.000	superfamily_PapD-like	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	tier1	-	-	73	0	0.00	48	10	17.24
ITGA11	0	genome.wustl.edu	37	15	68612722	68612722	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	15	68612722	68612722	C	T	SNP	ITGA11	ENST00000315757	human	ensembl	74_37	-1	known	missense	c.2417	p.C806Y	1.000	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA11	HGNC	ENSG00000137809	tier1	-	-	13	0	0.00	14	4	22.22
KCNH2	0	genome.wustl.edu	37	7	150647132	150647132	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	7	150647132	150647132	G	A	SNP	KCNH2	ENST00000430723	human	ensembl	74_37	-1	known	missense	c.2522	p.P841L	0.080	smart_cNMP-bd_dom	pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,pfam_PAS_fold,pfam_PAS_fold_3,superfamily_cNMP-bd-like,superfamily_PAS,smart_PAC,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,pfscan_PAS,pfscan_PAS-assoc_C,prints_K_chnl_volt-dep_EAG/ELK/ERG,prints_K_chnl_volt-dep_ERG,tigrfam_PAS	-	no_errors	KCNH2	HGNC	ENSG00000055118	tier1	-	-	75	0	0.00	51	12	19.05
PSMD1	0	genome.wustl.edu	37	2	231937071	231937071	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	2	231937071	231937071	A	G	SNP	PSMD1	ENST00000308696	human	ensembl	74_37	+1	known	missense	c.823	p.I275V	0.996	superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	pfam_Proteasome/cyclosome_rpt,superfamily_ARM-type_fold,pirsf_26S_Psome_Rpn2	-	no_errors	PSMD1	HGNC	ENSG00000173692	tier1	-	-	104	0	0.00	70	12	14.63
PODXL	0	genome.wustl.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	7	131241029	131241030	-	GGCGAC	INS	PODXL	ENST00000541194	human	ensembl	74_37	-1	known	in_frame_ins	c.90_89	p.32in_frame_insPS	0.002:0.003	pirsf_Podocalyxin-like_p1	pfam_CD34/Podocalyxin,pirsf_Podocalyxin-like_p1	-	no_errors	PODXL	HGNC	ENSG00000128567	tier1			NA	NA	NA	NA	NA	NA
NUP107	0	genome.wustl.edu	37	12	69113363	69113363	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	69113363	69113363	G	C	SNP	NUP107	ENST00000229179	human	ensembl	74_37	+1	known	missense	c.1180	p.E394Q	1.000	pfam_Nup84_Nup100	pfam_Nup84_Nup100	-	no_errors	NUP107	HGNC	ENSG00000111581	tier1	-	-	58	0	0.00	77	54	41.22
SEC22C	0	genome.wustl.edu	37	3	42602771	42602771	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	3	42602771	42602771	C	A	SNP	SEC22C	ENST00000264454	human	ensembl	74_37	-1	known	missense	c.364	p.V122L	1.000	superfamily_Longin-like_dom	superfamily_Longin-like_dom,pfscan_Longin_dom	-	no_errors	SEC22C	HGNC	ENSG00000093183	tier1	-	-	41	0	0.00	37	4	9.76
PLXNA2	0	genome.wustl.edu	37	1	208200404	208200404	+	RNA	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	1	208200404	208200404	G	A	SNP	PLXNA2	ENST00000483048	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLXNA2	HGNC	ENSG00000076356	tier1	-	-	62	0	0.00	42	4	8.70
MVP	0	genome.wustl.edu	37	16	29852944	29852944	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	16	29852944	29852944	A	G	SNP	MVP	ENST00000357402	human	ensembl	74_37	+1	known	missense	c.1219	p.M407V	1.000	NULL	pfam_Vault_N,pfam_MVP_shoulder	-	no_errors	MVP	HGNC	ENSG00000013364	tier1	-	-	39	0	0.00	32	5	13.51
ENSG00000273000	0	genome.wustl.edu	37	22	24037625	24037626	+	RNA	INS	-	-	CTGTTG			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	22	24037625	24037626	-	CTGTTG	INS	ENSG00000273000	ENST00000421064	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.005	-	-	-	no_errors	KB-1572G7.2	Clone_based_vega_gene	ENSG00000273000	tier1			NA	NA	NA	NA	NA	NA
C16orf96	0	genome.wustl.edu	37	16	4643291	4643291	+	Silent	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	16	4643291	4643291	C	T	SNP	C16orf96	ENST00000444310	human	ensembl	74_37	+1	known	silent	c.2841	p.C947	0.844	NULL	NULL	-	no_errors	C16orf96	HGNC	ENSG00000205832	tier1	-	-	72	0	0.00	58	15	20.55
LOC101927832	0	genome.wustl.edu	37	3	142720221	142720222	+	RNA	INS	-	-	GGACAACGA			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	3	142720221	142720222	-	GGACAACGA	INS	LOC101927832	ENST00000595248	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.015	-	-	-	no_errors	RP11-372E1.6	Clone_based_vega_gene	ENSG00000241570	tier1			NA	NA	NA	NA	NA	NA
FTSJ3	0	genome.wustl.edu	37	17	61904054	61904054	+	Silent	SNP	G	G	A			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	17	61904054	61904054	G	A	SNP	FTSJ3	ENST00000584193	human	ensembl	74_37	-1	known	silent	c.72	p.C24	0.000	NULL	NULL	-	no_errors	FTSJ3	HGNC	ENSG00000108592	tier1	-	-	52	0	0.00	45	4	8.16
RABEP2	0	genome.wustl.edu	37	16	28931200	28931202	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	16	28931200	28931202	CTG	-	DEL	RABEP2	ENST00000358201	human	ensembl	74_37	-1	known	in_frame_del	c.339_337	p.Q113in_frame_del	1.000:1.000:1.000	pfam_Rabaptin_coiled-coil	pfam_Rabaptin_coiled-coil,pfam_Rabaptin_Rab5-bd_dom,prints_Rabaptin	-	no_errors	RABEP2	HGNC	ENSG00000177548	tier1			31	0	0.00	20	4	16.67
KDM5A	0	genome.wustl.edu	37	12	495084	495084	+	Silent	SNP	G	G	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	495084	495084	G	T	SNP	KDM5A	ENST00000399788	human	ensembl	74_37	-1	known	silent	c.222	p.V74	0.990	superfamily_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_Znf_PHD-finger,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5A	HGNC	ENSG00000073614	tier1	-	-	72	0	0.00	41	4	8.89
CPM	0	genome.wustl.edu	37	12	69264130	69264130	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A7ES-01A-31D-A38Z-09	TCGA-DX-A7ES-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	350f490c-6cb9-42f6-a54e-4707072be422	f5ab5ae4-49e5-4a01-9112-6aa58c023e0e	12	69264130	69264130	C	T	SNP	CPM	ENST00000338356	human	ensembl	74_37	-1	known	missense	c.481	p.E161K	1.000	pfam_Peptidase_M14,pfam_Aste_AspA,smart_Peptidase_M14	pfam_Peptidase_M14,pfam_Aste_AspA,superfamily_CarboxyPept-like_regulatory,smart_Peptidase_M14,prints_Peptidase_M14	-	no_errors	CPM	HGNC	ENSG00000135678	tier1	-	-	44	0	0.00	360	120	25.00
