Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ENSG00000226232	0	genome.wustl.edu	37	16	70011737	70011737	+	RNA	SNP	T	T	C			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	16	70011737	70011737	T	C	SNP	ENSG00000226232	ENST00000525562	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-419C5.2	Clone_based_vega_gene	ENSG00000226232	tier1	rs199849939	-	29	0	0.00	14	7	33.33
TSSC1	0	genome.wustl.edu	37	2	3212436	3212436	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	3212436	3212436	C	T	SNP	TSSC1	ENST00000443925	human	ensembl	74_37	-1	putative	missense	c.809	p.C270Y	0.001	NULL	superfamily_WD40_repeat_dom	-	no_errors	TSSC1	HGNC	ENSG00000032389	tier1	-	-	32	0	0.00	45	4	8.16
GRIK3	0	genome.wustl.edu	37	1	37325619	37325619	+	Splice_Site	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	37325619	37325619	C	T	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	splice_site	c.787-1	e6-1	1.000	-	-	-	no_errors	GRIK3	HGNC	ENSG00000163873	tier1	-	-	31	0	0.00	29	8	21.62
DNAH8	0	genome.wustl.edu	37	6	38813373	38813373	+	Silent	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	6	38813373	38813373	G	A	SNP	DNAH8	ENST00000359357	human	ensembl	74_37	+1	known	silent	c.4218	p.K1406	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH8	HGNC	ENSG00000124721	tier1	-	-	15	0	0.00	21	12	36.36
MS4A14	0	genome.wustl.edu	37	11	60164142	60164142	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	60164142	60164142	C	T	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	missense	c.91	p.H31Y	0.977	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928	tier1	-	-	47	0	0.00	66	11	14.29
INPP5J	0	genome.wustl.edu	37	22	31522464	31522464	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	22	31522464	31522464	G	A	SNP	INPP5J	ENST00000331075	human	ensembl	74_37	+1	known	missense	c.1374	p.M458I	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase,smart_IPPc	-	no_errors	INPP5J	HGNC	ENSG00000185133	tier1	-	-	39	0	0.00	41	4	8.89
TET1	0	genome.wustl.edu	37	10	70412266	70412266	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	10	70412266	70412266	A	-	DEL	TET1	ENST00000373644	human	ensembl	74_37	+1	known	frame_shift_del	c.4376	p.G1461fs	1.000	NULL	pfam_Znf_CXXC,pfscan_Znf_CXXC	-	no_errors	TET1	HGNC	ENSG00000138336	tier1			16	0	0.00	18	3	14.29
ENSG00000234978	0	genome.wustl.edu	37	1	142803930	142803930	+	RNA	SNP	A	A	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	142803930	142803930	A	G	SNP	ENSG00000234978	ENST00000423385	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-423O2.5	Clone_based_vega_gene	ENSG00000234978	tier1	rs74792472	-	11	0	0.00	13	6	31.58
RDH13	0	genome.wustl.edu	37	19	55574429	55574430	+	RNA	INS	-	-	GGCGTCC			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	19	55574429	55574430	-	GGCGTCC	INS	RDH13	ENST00000589305	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.004:0.003	-	-	-	no_errors	RDH13	HGNC	ENSG00000160439	tier1			NA	NA	NA	NA	NA	NA
DHX16	0	genome.wustl.edu	37	6	30632764	30632764	+	Silent	SNP	C	C	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	6	30632764	30632764	C	A	SNP	DHX16	ENST00000376442	human	ensembl	74_37	-1	known	silent	c.1131	p.P377	0.000	NULL	pfam_DUF1605,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DHX16	HGNC	ENSG00000204560	tier1	-	-	43	0	0.00	44	5	10.00
LRRC16B	0	genome.wustl.edu	37	14	24538169	24538169	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	14	24538169	24538169	G	A	SNP	LRRC16B	ENST00000342740	human	ensembl	74_37	+1	known	missense	c.3976	p.V1326I	0.939	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	tier1	-	-	15	0	0.00	7	4	36.36
KRTAP10-11	0	genome.wustl.edu	37	21	46067079	46067079	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	21	46067079	46067079	C	A	SNP	KRTAP10-11	ENST00000334670	human	ensembl	74_37	+1	known	missense	c.704	p.S235Y	1.000	NULL	NULL	-	no_errors	KRTAP10-11	HGNC	ENSG00000243489	tier1	-	-	89	0	0.00	82	31	27.43
BHLHE23	0	genome.wustl.edu	37	20	61637484	61637484	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	20	61637484	61637484	C	T	SNP	BHLHE23	ENST00000370346	human	ensembl	74_37	-1	known	missense	c.595	p.A199T	0.994	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	BHLHE23	HGNC	ENSG00000125533	tier1	-	-	11	0	0.00	6	4	40.00
SIPA1L2	0	genome.wustl.edu	37	1	232561478	232561478	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	232561478	232561478	C	T	SNP	SIPA1L2	ENST00000262861	human	ensembl	74_37	-1	known	missense	c.4487	p.R1496K	1.000	pfam_DUF3401	pfam_DUF3401,pfam_Rap_GAP_dom,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP_dom	-	no_errors	SIPA1L2	HGNC	ENSG00000116991	tier1	-	-	25	0	0.00	36	11	23.40
MED16	0	genome.wustl.edu	37	19	880053	880053	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	19	880053	880053	G	A	SNP	MED16	ENST00000325464	human	ensembl	74_37	-1	known	missense	c.1237	p.P413S	0.766	pfam_Mediator_Med16,superfamily_WD40_repeat_dom	pfam_Mediator_Med16,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	MED16	HGNC	ENSG00000175221	tier1	-	-	21	0	0.00	18	4	18.18
CARS	0	genome.wustl.edu	37	11	3038427	3038427	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	3038427	3038427	T	C	SNP	CARS	ENST00000380525	human	ensembl	74_37	-1	known	missense	c.1826	p.N609S	1.000	superfamily_tRNAsynth_1a_anticodon-bd,tigrfam_Cys-tRNA-ligase	pfam_Cys-tRNA/MSH_ligase,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,prints_Cys-tRNA/MSH_ligase,tigrfam_Cys-tRNA-ligase	-	no_errors	CARS	HGNC	ENSG00000110619	tier1	-	-	40	0	0.00	41	8	16.33
LRP1B	0	genome.wustl.edu	37	2	142567933	142567933	+	Silent	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	142567933	142567933	G	A	SNP	LRP1B	ENST00000389484	human	ensembl	74_37	-1	known	silent	c.120	p.H40	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EG-like_dom,superfamily_Growth_fac_rcpt_N_dom,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt,prints_LDrepeatLR_classA_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	tier1	-	-	29	0	0.00	16	8	33.33
PDCD4	0	genome.wustl.edu	37	10	112653894	112653894	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	10	112653894	112653894	G	T	SNP	PDCD4	ENST00000280154	human	ensembl	74_37	+1	known	nonsense	c.1036	p.E346*	1.000	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	-	no_errors	PDCD4	HGNC	ENSG00000150593	tier1	-	-	28	0	0.00	15	3	16.67
PRIM2	0	genome.wustl.edu	37	6	57512787	57512788	+	RNA	INS	-	-	CACCAAGGC			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	6	57512787	57512788	-	CACCAAGGC	INS	PRIM2	ENST00000389488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.057:0.034	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	tier1			NA	NA	NA	NA	NA	NA
ENSG00000214797	0	genome.wustl.edu	37	11	59038010	59038011	+	RNA	INS	-	-	AA			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	59038010	59038011	-	AA	INS	ENSG00000214797	ENST00000399003	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006:0.000	-	-	-	no_errors	RP11-1036E20.9	Clone_based_vega_gene	ENSG00000214797	tier1			28	0	0.00	26	4	13.33
LMBR1	0	genome.wustl.edu	37	7	156520638	156520638	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	7	156520638	156520638	G	A	SNP	LMBR1	ENST00000354505	human	ensembl	74_37	-1	known	missense	c.1102	p.P368S	1.000	pfam_LMBR1-like_membr_prot	pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt	-	no_errors	LMBR1	HGNC	ENSG00000105983	tier1	-	-	32	0	0.00	24	3	10.71
DENND2C	0	genome.wustl.edu	37	1	115168618	115168618	+	RNA	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	115168618	115168618	G	A	SNP	DENND2C	ENST00000493549	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DENND2C	HGNC	ENSG00000175984	tier1	-	-	9	0	0.00	7	4	36.36
ENSG00000228748	0	genome.wustl.edu	37	10	79551868	79551868	+	RNA	DEL	A	A	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	10	79551868	79551868	A	-	DEL	ENSG00000228748	ENST00000434097	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.950	-	-	-	no_errors	RP13-39P12.3	Clone_based_vega_gene	ENSG00000228748	tier1			33	0	0.00	15	2	11.76
TEX38	0	genome.wustl.edu	37	1	47137457	47137457	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	47137457	47137457	C	G	SNP	TEX38	ENST00000569393	human	ensembl	74_37	+1	known	missense	c.13	p.Q5E	0.444	NULL	NULL	-	no_errors	TEX38	HGNC	ENSG00000186118	tier1	-	-	30	0	0.00	23	3	11.54
ITGB6	0	genome.wustl.edu	37	2	160980365	160980365	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	160980365	160980365	G	C	SNP	ITGB6	ENST00000283249	human	ensembl	74_37	-1	known	missense	c.1918	p.Q640E	0.991	pirsf_Integrin_bsu,pfam_Integrin_bsu_tail,superfamily_Integrin_bsu_tail	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB6	HGNC	ENSG00000115221	tier1	-	-	30	0	0.00	27	14	34.15
ATG2B	0	genome.wustl.edu	37	14	96788614	96788614	+	RNA	DEL	A	A	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	14	96788614	96788614	A	-	DEL	ATG2B	ENST00000488421	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ATG2B	HGNC	ENSG00000066739	tier1			18	0	0.00	36	5	12.20
FBRS	0	genome.wustl.edu	37	16	30680597	30680598	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	16	30680597	30680598	-	T	INS	FBRS	ENST00000356166	human	ensembl	74_37	+1	known	frame_shift_ins	c.2574_2575	p.E859fs	0.995:0.999	NULL	prints_AUTS2	-	no_errors	FBRS	HGNC	ENSG00000156860	tier1			36	0	0.00	38	7	15.56
ZAK	0	genome.wustl.edu	37	2	174034619	174034619	+	Silent	SNP	A	A	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	174034619	174034619	A	G	SNP	ZAK	ENST00000375213	human	ensembl	74_37	+1	known	silent	c.246	p.T82	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,pfscan_SAM,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MLTK	Uniprot_gn	ENSG00000091436	tier1	-	-	26	0	0.00	27	4	12.90
ENSG00000254420	0	genome.wustl.edu	37	11	78154811	78154811	+	RNA	DEL	A	A	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	78154811	78154811	A	-	DEL	ENSG00000254420	ENST00000534168	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-452H21.1	Clone_based_vega_gene	ENSG00000254420	tier1			20	0	0.00	28	3	9.68
ALLC	0	genome.wustl.edu	37	2	3727502	3727502	+	Silent	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	3727502	3727502	C	T	SNP	ALLC	ENST00000252505	human	ensembl	74_37	+1	known	silent	c.216	p.I72	0.998	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	pfam_Allantoicase_dom,superfamily_Galactose-bd-like,tigrfam_Allantoicase	-	no_errors	ALLC	HGNC	ENSG00000151360	tier1	-	-	45	0	0.00	39	4	9.30
SSPO	0	genome.wustl.edu	37	7	149516516	149516517	+	RNA	INS	-	-	CGT			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	7	149516516	149516517	-	CGT	INS	SSPO	ENST00000378016	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.986:0.197	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	tier1			12	0	0.00	8	11	57.89
SNHG9	0	genome.wustl.edu	37	16	2015016	2015073	+	RNA	DEL	CACCCGAAAAGCGACTATAAACGCCGGCGCCTCCGTCCCCAGCCGCGGCTCGGGAATC	CACCCGAAAAGCGACTATAAACGCCGGCGCCTCCGTCCCCAGCCGCGGCTCGGGAATC	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	CACCCGAAAAGCGACTATAAACGCCGGCGCCTCCGTCCCCAGCCGCGGCTCGGGAATC	CACCCGAAAAGCGACTATAAACGCCGGCGCCTCCGTCCCCAGCCGCGGCTCGGGAATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	16	2015016	2015073	CACCCGAAAAGCGACTATAAACGCCGGCGCCTCCGTCCCCAGCCGCGGCTCGGGAATC	-	DEL	SNHG9	ENST00000531523	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.005:0.009:0.012:0.014:0.016:0.016:0.003:0.000:0.000:0.001:0.001:0.003:0.004:0.005:0.005:0.005:0.005:0.004:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.001:0.000:0.000:0.000:0.000	-	-	-	no_errors	SNHG9	HGNC	ENSG00000255198	tier1			NA	NA	NA	NA	NA	NA
ENSG00000268301	0	genome.wustl.edu	37	12	11187132	11187133	+	In_Frame_Ins	INS	-	-	TTG			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	12	11187132	11187133	-	TTG	INS	ENSG00000268301	ENST00000601123	human	ensembl	74_37	+1	novel	in_frame_ins	c.46_47	p.S16in_frame_insFA	0.012:0.013	NULL	NULL	-	no_errors	AC018630.1	Clone_based_ensembl_gene	ENSG00000268301	tier1			11	0	0.00	11	8	42.11
TTN	0	genome.wustl.edu	37	2	179584151	179584151	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	179584151	179584151	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	missense	c.20234	p.R6745L	0.989	pfam_Ig_I-set,superfamily_RNaseH-like_dom,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	37	0	0.00	40	9	18.37
MIR1234	0	genome.wustl.edu	37	8	145625525	145625526	+	RNA	DEL	CC	CC	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	CC	CC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	8	145625525	145625526	CC	-	DEL	MIR1234	ENST00000408875	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	MIR1234	HGNC	ENSG00000221802	tier1			15	0	0.00	19	7	26.92
HBD	0	genome.wustl.edu	37	11	5254013	5254013	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	5254013	5254013	G	T	SNP	HBD	ENST00000292901	human	ensembl	74_37	-1	putative	missense	c.331	p.P111T	0.000	NULL	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Haemoglobin_b	-	no_errors	HBD	HGNC	ENSG00000223609	tier1	-	-	36	0	0.00	58	10	14.71
MTTP	0	genome.wustl.edu	37	4	100530103	100530103	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	4	100530103	100530103	C	A	SNP	MTTP	ENST00000265517	human	ensembl	74_37	+1	known	missense	c.1738	p.Q580K	1.000	superfamily_Vitellinogen_superhlx,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	pfam_Lipid_transpt_N,superfamily_Vitellinogen_superhlx,superfamily_Lipid_transp_b-sht_shell,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	MTTP	HGNC	ENSG00000138823	tier1	-	-	9	0	0.00	7	5	41.67
NTN4	0	genome.wustl.edu	37	12	96059706	96059706	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	12	96059706	96059706	C	G	SNP	NTN4	ENST00000343702	human	ensembl	74_37	-1	known	missense	c.1630	p.V544L	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Laminin_N,pfam_EGF_laminin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_Netrin_module_non-TIMP,pfscan_EGF_laminin,pfscan_Laminin_N,pfscan_Netrin_domain	-	no_errors	NTN4	HGNC	ENSG00000074527	tier1	-	-	26	0	0.00	26	21	44.68
ERVK13-1	0	genome.wustl.edu	37	16	2712500	2712501	+	RNA	INS	-	-	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	16	2712500	2712501	-	T	INS	ERVK13-1	ENST00000568395	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.093:0.090	-	-	-	no_errors	ERVK13-1	HGNC	ENSG00000260565	tier1			21	0	0.00	39	4	9.30
FRK	0	genome.wustl.edu	37	6	116288797	116288797	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	6	116288797	116288797	C	T	SNP	FRK	ENST00000606080	human	ensembl	74_37	-1	known	missense	c.716	p.R239Q	0.997	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FRK	HGNC	ENSG00000111816	tier1	-	-	46	0	0.00	52	9	14.75
LILRB1	0	genome.wustl.edu	37	19	55146164	55146164	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	19	55146164	55146164	T	G	SNP	LILRB1	ENST00000324602	human	ensembl	74_37	+1	known	missense	c.1436	p.L479R	0.012	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	LILRB1	HGNC	ENSG00000104972	tier1	-	-	36	0	0.00	47	5	9.62
HIVEP3	0	genome.wustl.edu	37	1	42046088	42046088	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	42046088	42046088	T	A	SNP	HIVEP3	ENST00000247584	human	ensembl	74_37	-1	known	nonsense	c.4381	p.K1461*	0.900	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	HIVEP3	HGNC	ENSG00000127124	tier1	-	-	52	0	0.00	67	15	18.29
DNAH17	0	genome.wustl.edu	37	17	76506478	76506478	+	Silent	SNP	C	C	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	17	76506478	76506478	C	A	SNP	DNAH17	ENST00000389840	human	ensembl	74_37	-1	known	silent	c.4212	p.S1404	0.013	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_HR1_rho-bd	-	no_errors	DNAH17	HGNC	ENSG00000187775	tier1	-	-	27	0	0.00	19	10	34.48
TPD52L1	0	genome.wustl.edu	37	6	125550267	125550267	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	6	125550267	125550267	G	T	SNP	TPD52L1	ENST00000534000	human	ensembl	74_37	+1	known	nonsense	c.139	p.E47*	1.000	pfam_TPD52	pfam_TPD52	-	no_errors	TPD52L1	HGNC	ENSG00000111907	tier1	-	-	36	0	0.00	43	4	8.51
DRC1	0	genome.wustl.edu	37	2	26676386	26676386	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	26676386	26676386	G	T	SNP	DRC1	ENST00000288710	human	ensembl	74_37	+1	known	nonsense	c.1888	p.E630*	1.000	NULL	NULL	-	no_errors	DRC1	HGNC	ENSG00000157856	tier1	-	-	27	0	0.00	34	4	10.53
GNAS	0	genome.wustl.edu	37	20	57464277	57464278	+	RNA	INS	-	-	CGGCG			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	20	57464277	57464278	-	CGGCG	INS	GNAS	ENST00000469431	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.949:0.921	-	-	-	no_errors	GNAS	HGNC	ENSG00000087460	tier1			NA	NA	NA	NA	NA	NA
TUBB2B	0	genome.wustl.edu	37	6	3225063	3225063	+	Silent	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	6	3225063	3225063	G	T	SNP	TUBB2B	ENST00000259818	human	ensembl	74_37	-1	known	silent	c.1260	p.S420	0.493	superfamily_Tub_FtsZ_C,prints_Beta_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB2B	HGNC	ENSG00000137285	tier1	-	-	26	0	0.00	36	9	20.00
C7orf31	0	genome.wustl.edu	37	7	25194754	25194754	+	Silent	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	7	25194754	25194754	G	A	SNP	C7orf31	ENST00000283905	human	ensembl	74_37	-1	known	silent	c.471	p.G157	0.006	NULL	NULL	-	no_errors	C7orf31	HGNC	ENSG00000153790	tier1	-	-	39	0	0.00	38	16	29.63
MBD1	0	genome.wustl.edu	37	18	47796413	47796413	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	18	47796413	47796413	C	G	SNP	MBD1	ENST00000339998	human	ensembl	74_37	-1	known	missense	c.1621	p.D541H	0.000	NULL	pfam_Znf_CXXC,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_dom,smart_Methyl_CpG_DNA-bd,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_CXXC	-	no_errors	MBD1	HGNC	ENSG00000141644	tier1	-	-	27	0	0.00	27	8	22.86
COX6A2	0	genome.wustl.edu	37	16	31439619	31439619	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	16	31439619	31439619	G	A	SNP	COX6A2	ENST00000287490	human	ensembl	74_37	-1	known	missense	c.28	p.R10W	0.426	pirsf_Cyt_c_oxidase_su6a	pfam_Cyt_c_oxidase_su6a,superfamily_Cyt_c_oxidase_su6a,pirsf_Cyt_c_oxidase_su6a	-	no_errors	COX6A2	HGNC	ENSG00000156885	tier1	-	-	60	0	0.00	64	6	8.57
MOG	0	genome.wustl.edu	37	6	29625018	29625018	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	6	29625018	29625018	G	A	SNP	MOG	ENST00000376898	human	ensembl	74_37	+1	known	missense	c.32	p.S11N	0.827	pirsf_Myelin-oligodendrocyte_glycop	pirsf_Myelin-oligodendrocyte_glycop,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	MOG	HGNC	ENSG00000204655	tier1	-	-	29	0	0.00	41	4	8.89
PHACTR2	0	genome.wustl.edu	37	6	144081695	144081696	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	6	144081695	144081696	-	A	INS	PHACTR2	ENST00000440869	human	ensembl	74_37	+1	known	frame_shift_ins	c.612_613	p.N206fs	0.998:1.000	NULL	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR2	HGNC	ENSG00000112419	tier1			28	0	0.00	31	4	11.43
FAM135B	0	genome.wustl.edu	37	8	139323106	139323106	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	8	139323106	139323106	A	C	SNP	FAM135B	ENST00000395297	human	ensembl	74_37	-1	known	missense	c.135	p.S45R	0.982	NULL	pfam_DUF676_lipase-like,pfam_DUF3657,pfam_PGAP1-like	-	no_errors	FAM135B	HGNC	ENSG00000147724	tier1	-	-	22	0	0.00	22	4	15.38
SCOC	0	genome.wustl.edu	37	4	141294859	141294859	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	4	141294859	141294859	C	A	SNP	SCOC	ENST00000608372	human	ensembl	74_37	+1	known	missense	c.169	p.P57T	0.015	NULL	pfam_DUF2205_coiled-coil	-	no_errors	SCOC	HGNC	ENSG00000153130	tier1	-	-	60	0	0.00	53	19	26.39
ZPBP	0	genome.wustl.edu	37	7	50070806	50070806	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	7	50070806	50070806	C	G	SNP	ZPBP	ENST00000046087	human	ensembl	74_37	-1	known	missense	c.588	p.Q196H	1.000	pfam_Sp38-bd	pfam_Sp38-bd,pfscan_Ig-like_dom	-	no_errors	ZPBP	HGNC	ENSG00000042813	tier1	-	-	30	0	0.00	34	6	15.00
PTPRVP	0	genome.wustl.edu	37	1	202156135	202156136	+	RNA	INS	-	-	CCTCGCTCCTCGCTCCTCGCT			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	202156135	202156136	-	CCTCGCTCCTCGCTCCTCGCT	INS	PTPRVP	ENST00000482597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.022:0.016	-	-	-	no_errors	PTPRVP	HGNC	ENSG00000243323	tier1			NA	NA	NA	NA	NA	NA
YBEY	0	genome.wustl.edu	37	21	47707039	47707040	+	Splice_Site	INS	-	-	AA			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	21	47707039	47707040	-	AA	INS	YBEY	ENST00000329319	human	ensembl	74_37	+1	known	splice_site_ins	c.210+2_210+1	e1+2	1.000:0.124	-	-	-	no_errors	YBEY	HGNC	ENSG00000182362	tier1			12	0	0.00	20	3	13.04
DKC1	0	genome.wustl.edu	37	X	154005089	154005091	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	X	154005089	154005091	AAG	-	DEL	DKC1	ENST00000369550	human	ensembl	74_37	+1	known	in_frame_del	c.1492_1494	p.K501in_frame_del	0.284:0.284:0.273	NULL	pfam_Dyskerin-like,pfam_PsdUridine_synth,pfam_PUA,superfamily_PsdUridine_synth_cat_dom,superfamily_PUA-like_domain,smart_PUA,pfscan_PUA,tigrfam_tRNA_PsdUridine_synth_B_fam,tigrfam_Uncharacterised_CHP00451	-	no_errors	DKC1	HGNC	ENSG00000130826	tier1			17	0	0.00	39	7	15.22
FUNDC2P2	0	genome.wustl.edu	37	2	84518513	84518513	+	RNA	SNP	C	C	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	84518513	84518513	C	A	SNP	FUNDC2P2	ENST00000331369	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.059	-	-	-	no_errors	FUNDC2P2	HGNC	ENSG00000182814	tier1	-	-	13	0	0.00	13	10	43.48
VAV1	0	genome.wustl.edu	37	19	6833926	6833926	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	19	6833926	6833926	T	A	SNP	VAV1	ENST00000602142	human	ensembl	74_37	+1	known	missense	c.1739	p.L580Q	0.680	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH3_domain,prints_SH2,prints_SM22_calponin	-	no_errors	VAV1	HGNC	ENSG00000141968	tier1	-	-	54	0	0.00	93	9	8.74
C6	0	genome.wustl.edu	37	5	41149350	41149350	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	5	41149350	41149350	T	-	DEL	C6	ENST00000263413	human	ensembl	74_37	-1	known	frame_shift_del	c.2616	p.K872fs	0.522	smart_FacI_MAC	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537	tier1			36	0	0.00	29	3	9.38
ASRGL1	0	genome.wustl.edu	37	11	62105471	62105471	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	62105471	62105471	C	T	SNP	ASRGL1	ENST00000301776	human	ensembl	74_37	+1	known	missense	c.22	p.H8Y	1.000	pfam_Peptidase_T2	pfam_Peptidase_T2	-	no_errors	ASRGL1	HGNC	ENSG00000162174	tier1	-	-	35	0	0.00	23	6	20.69
FAM46D	0	genome.wustl.edu	37	X	79699000	79699000	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	X	79699000	79699000	T	C	SNP	FAM46D	ENST00000308293	human	ensembl	74_37	+1	known	missense	c.962	p.I321T	0.997	pfam_DUF1693	pfam_DUF1693	-	no_errors	FAM46D	HGNC	ENSG00000174016	tier1	-	-	15	0	0.00	19	7	26.92
TP53	0	genome.wustl.edu	37	17	7578370	7578370	+	Splice_Site	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	17	7578370	7578370	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	splice_site	c.559+1	e4+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	21	0	0.00	17	11	39.29
CLCA2	0	genome.wustl.edu	37	1	86913240	86913240	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	86913240	86913240	C	T	SNP	CLCA2	ENST00000370565	human	ensembl	74_37	+1	known	missense	c.1763	p.A588V	0.914	pfam_DUF1973,tigrfam_CaCC_prot	pfam_Cl_channel_Ca,pfam_DUF1973,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A,tigrfam_CaCC_prot	-	no_errors	CLCA2	HGNC	ENSG00000137975	tier1	-	-	34	0	0.00	44	6	12.00
POU5F2	0	genome.wustl.edu	37	5	93076580	93076580	+	Silent	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	5	93076580	93076580	C	T	SNP	POU5F2	ENST00000510627	human	ensembl	74_37	-1	known	silent	c.690	p.Q230	0.996	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU5F2	HGNC	ENSG00000248483	tier1	-	-	30	0	0.00	36	5	12.20
EP400	0	genome.wustl.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	12	132547087	132547087	G	A	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8283	p.Q2761	1.000	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	tier1	rs12366766	-	32	0	0.00	44	10	18.52
SLITRK3	0	genome.wustl.edu	37	3	164906374	164906374	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	3	164906374	164906374	G	-	DEL	SLITRK3	ENST00000241274	human	ensembl	74_37	-1	known	frame_shift_del	c.2245	p.Q749fs	1.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK3	HGNC	ENSG00000121871	tier1			31	0	0.00	15	8	34.78
ADCYAP1R1	0	genome.wustl.edu	37	7	31102898	31102898	+	Silent	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	7	31102898	31102898	C	T	SNP	ADCYAP1R1	ENST00000304166	human	ensembl	74_37	+1	known	silent	c.18	p.H6	0.013	NULL	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like	-	no_errors	ADCYAP1R1	HGNC	ENSG00000078549	tier1	-	-	29	0	0.00	30	4	11.43
PTHLH	0	genome.wustl.edu	37	12	28114898	28114898	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	12	28114898	28114898	T	-	DEL	PTHLH	ENST00000354417	human	ensembl	74_37	-1	known	frame_shift_del	c.557	p.K186fs	0.135	NULL	pfam_PTH/PTH-rel,smart_PTH/PTH-rel	-	no_errors	PTHLH	HGNC	ENSG00000087494	tier1			13	0	0.00	12	3	20.00
OR4A47	0	genome.wustl.edu	37	11	48510958	48510958	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	48510958	48510958	G	T	SNP	OR4A47	ENST00000446524	human	ensembl	74_37	+1	known	missense	c.614	p.C205F	0.032	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4A47	HGNC	ENSG00000237388	tier1	-	-	18	0	0.00	28	7	20.00
G6PC2	0	genome.wustl.edu	37	2	169764394	169764394	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	169764394	169764394	C	A	SNP	G6PC2	ENST00000375363	human	ensembl	74_37	+1	known	missense	c.873	p.S291R	0.997	pirsf_Glucose-6-phosphatase	pfam_P_Acid_Pase_2/haloperoxidase,superfamily_P_Acid_Pase_2/haloperoxidase,smart_P_Acid_Pase_2/haloperoxidase,pirsf_Glucose-6-phosphatase	-	no_errors	G6PC2	HGNC	ENSG00000152254	tier1	-	-	39	0	0.00	43	11	20.37
HSPA14	0	genome.wustl.edu	37	10	14885397	14885397	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	10	14885397	14885397	G	T	SNP	HSPA14	ENST00000437161	human	ensembl	74_37	+1	known	missense	c.249	p.Q83H	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,prints_Hsp_70_fam	-	no_errors	HSPA14	HGNC	ENSG00000187522	tier1	-	-	39	0	0.00	46	4	8.00
ARCN1	0	genome.wustl.edu	37	11	118454689	118454689	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	118454689	118454689	A	G	SNP	ARCN1	ENST00000264028	human	ensembl	74_37	+1	known	missense	c.613	p.I205V	1.000	NULL	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pfscan_Clathrin_mu_C	-	no_errors	ARCN1	HGNC	ENSG00000095139	tier1	-	-	12	0	0.00	24	5	17.24
HPD	0	genome.wustl.edu	37	12	122284821	122284821	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	12	122284821	122284821	C	T	SNP	HPD	ENST00000289004	human	ensembl	74_37	-1	known	missense	c.778	p.G260R	1.000	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	pfam_Glyas_Fos-R_dOase_dom,pirsf_4OHPhenylPyrv_dOase,tigrfam_4OHPhenylPyrv_dOase	-	no_errors	HPD	HGNC	ENSG00000158104	tier1	-	-	20	0	0.00	32	15	31.91
DCC	0	genome.wustl.edu	37	18	50450188	50450188	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	18	50450188	50450188	G	C	SNP	DCC	ENST00000442544	human	ensembl	74_37	+1	known	missense	c.809	p.S270T	0.994	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Neogenin_C,pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DCC	HGNC	ENSG00000187323	tier1	-	-	33	0	0.00	46	4	8.00
ENSG00000272430	0	genome.wustl.edu	37	10	46914775	46914775	+	RNA	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	10	46914775	46914775	G	A	SNP	ENSG00000272430	ENST00000605984	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.874	-	-	-	no_errors	RP11-38L15.8	Clone_based_vega_gene	ENSG00000272430	tier1	-	-	31	0	0.00	20	4	16.67
FAIM3	0	genome.wustl.edu	37	1	207095211	207095211	+	RNA	SNP	G	G	C			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	207095211	207095211	G	C	SNP	FAIM3	ENST00000528654	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	FAIM3	HGNC	ENSG00000162894	tier1	-	-	32	0	0.00	28	11	28.21
C1orf140	0	genome.wustl.edu	37	1	221509382	221509382	+	RNA	SNP	A	A	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	221509382	221509382	A	T	SNP	C1orf140	ENST00000439004	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-421L10.1	Clone_based_vega_gene	ENSG00000234754	tier1	-	-	35	0	0.00	25	4	13.79
DSCAM	0	genome.wustl.edu	37	21	41385110	41385110	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	21	41385110	41385110	G	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.5890	p.Q1964K	1.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587	tier1	-	-	29	0	0.00	40	17	29.82
FAT1	0	genome.wustl.edu	37	4	187628455	187628455	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	4	187628455	187628455	G	T	SNP	FAT1	ENST00000441802	human	ensembl	74_37	-1	known	missense	c.2527	p.Q843K	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EG-like_dom,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,prints_Cadherin,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin	-	no_errors	FAT1	HGNC	ENSG00000083857	tier1	-	-	25	0	0.00	24	4	14.29
LYN	0	genome.wustl.edu	37	8	56922483	56922483	+	Silent	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	8	56922483	56922483	C	T	SNP	LYN	ENST00000519728	human	ensembl	74_37	+1	known	silent	c.1353	p.D451	0.042	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	LYN	HGNC	ENSG00000254087	tier1	-	-	13	0	0.00	19	20	51.28
GTF3C5	0	genome.wustl.edu	37	9	135927532	135927532	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	9	135927532	135927532	C	T	SNP	GTF3C5	ENST00000372108	human	ensembl	74_37	+1	known	missense	c.854	p.P285L	1.000	pfam_TF_IIIC_su-5	pfam_TF_IIIC_su-5	-	no_errors	GTF3C5	HGNC	ENSG00000148308	tier1	-	-	32	0	0.00	39	19	32.76
FHOD3	0	genome.wustl.edu	37	18	34261459	34261460	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	18	34261459	34261460	AG	-	DEL	FHOD3	ENST00000257209	human	ensembl	74_37	+1	known	frame_shift_del	c.1371_1372	p.R461fs	0.879:1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775	tier1			38	0	0.00	46	5	9.80
KCNQ2	0	genome.wustl.edu	37	20	62055553	62055553	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	20	62055553	62055553	G	T	SNP	KCNQ2	ENST00000354587	human	ensembl	74_37	-1	known	missense	c.1194	p.D398E	0.994	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	tier1	-	-	47	0	0.00	45	12	21.05
NXF4	0	genome.wustl.edu	37	X	101822963	101822963	+	RNA	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	X	101822963	101822963	G	A	SNP	NXF4	ENST00000360035	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NXF4	HGNC	ENSG00000196970	tier1	-	-	16	0	0.00	11	9	45.00
OSBPL5	0	genome.wustl.edu	37	11	3113683	3113683	+	Silent	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	3113683	3113683	G	T	SNP	OSBPL5	ENST00000263650	human	ensembl	74_37	-1	known	silent	c.2238	p.G746	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL5	HGNC	ENSG00000021762	tier1	-	-	88	0	0.00	116	13	10.08
ALK	0	genome.wustl.edu	37	2	29940519	29940519	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	2	29940519	29940519	G	A	SNP	ALK	ENST00000389048	human	ensembl	74_37	-1	known	missense	c.712	p.P238S	0.964	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_MAM_dom,superfamily_Kinase-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_MAM_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ALK	HGNC	ENSG00000171094	tier1	-	-	46	0	0.00	36	4	10.00
EPHB6	0	genome.wustl.edu	37	7	142562077	142562077	+	Silent	SNP	T	T	C			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	7	142562077	142562077	T	C	SNP	EPHB6	ENST00000392957	human	ensembl	74_37	+1	known	silent	c.519	p.S173	0.082	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ephrin_rcpt_lig-bd_dom,superfamily_Galactose-bd-like,smart_Ephrin_rcpt_lig-bd_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_2,pfam_SAM_type1,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB6	HGNC	ENSG00000106123	tier1	rs78315767	-	29	0	0.00	34	5	12.82
TBC1D30	0	genome.wustl.edu	37	12	65225912	65225912	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	12	65225912	65225912	C	T	SNP	TBC1D30	ENST00000229088	human	ensembl	74_37	+1	known	missense	c.911	p.T304I	1.000	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D30	HGNC	ENSG00000111490	tier1	-	-	29	0	0.00	51	8	13.56
DRG1	0	genome.wustl.edu	37	22	31799118	31799118	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	22	31799118	31799118	G	T	SNP	DRG1	ENST00000331457	human	ensembl	74_37	+1	known	missense	c.270	p.E90D	1.000	pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	pfam_TGS,pfam_GTP_binding_domain,pfam_Fe2_transport_prot_B_N,superfamily_P-loop_NTPase,superfamily_TGS-like,prints_GTP_binding_domain,tigrfam_Small_GTP-bd_dom	-	no_errors	DRG1	HGNC	ENSG00000185721	tier1	-	-	39	0	0.00	52	5	8.77
ARHGEF28	0	genome.wustl.edu	37	5	73160684	73160684	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	5	73160684	73160684	C	A	SNP	ARHGEF28	ENST00000545377	human	ensembl	74_37	+1	known	missense	c.2090	p.P697H	0.400	pfam_Prot_Kinase_C-like_PE/DAG-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_DH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF28	HGNC	ENSG00000214944	tier1	-	-	37	0	0.00	34	4	10.53
MESP1	0	genome.wustl.edu	37	15	90294296	90294297	+	In_Frame_Ins	INS	-	-	CGGGGCTCGGCA			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	15	90294296	90294297	-	CGGGGCTCGGCA	INS	MESP1	ENST00000300057	human	ensembl	74_37	-1	known	in_frame_ins	c.167_166	p.56in_frame_insVPSP	0.000:0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MESP1	HGNC	ENSG00000166823	tier1			NA	NA	NA	NA	NA	NA
SEMA3A	0	genome.wustl.edu	37	7	83739786	83739786	+	Silent	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	7	83739786	83739786	C	T	SNP	SEMA3A	ENST00000265362	human	ensembl	74_37	-1	known	silent	c.453	p.E151	1.000	pfam_Semap_dom,superfamily_Semap_dom,smart_Semap_dom,pfscan_Semap_dom	pfam_Semap_dom,superfamily_Semap_dom,superfamily_Plexin-like_fold,smart_Semap_dom,smart_Plexin-like_fold,smart_Ig_sub,pfscan_Semap_dom,pfscan_Ig-like_dom	-	no_errors	SEMA3A	HGNC	ENSG00000075213	tier1	-	-	15	0	0.00	30	6	16.67
ST14	0	genome.wustl.edu	37	11	130060353	130060353	+	Silent	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	130060353	130060353	C	T	SNP	ST14	ENST00000278742	human	ensembl	74_37	+1	known	silent	c.639	p.S213	1.000	pirsf_Peptidase_S1A_matripase,superfamily_CUB_dom	pirsf_Peptidase_S1A_matripase,pfam_Peptidase_S1,pfam_LDrepeatLR_classA_rpt,pfam_CUB_dom,pfam_SEA_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_LDrepeatLR_classA_rpt,smart_Peptidase_S1,prints_LDrepeatLR_classA_rpt,prints_Peptidase_S1A,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_Peptidase_S1	-	no_errors	ST14	HGNC	ENSG00000149418	tier1	-	-	69	0	0.00	95	18	15.93
AFAP1-AS1	0	genome.wustl.edu	37	4	7780398	7780398	+	RNA	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	4	7780398	7780398	G	A	SNP	AFAP1-AS1	ENST00000608442	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AFAP1-AS1	HGNC	ENSG00000272620	tier1	-	-	18	0	0.00	17	4	19.05
UROS	0	genome.wustl.edu	37	10	127495982	127495982	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	10	127495982	127495982	T	A	SNP	UROS	ENST00000368786	human	ensembl	74_37	-1	known	missense	c.394	p.R132W	0.997	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	pfam_4pyrrol_synth_uPrphyn_synth,superfamily_4pyrrol_synth_uPrphyn_synth	-	no_errors	UROS	HGNC	ENSG00000188690	tier1	-	-	43	0	0.00	33	3	8.33
NBPF5P	0	genome.wustl.edu	37	1	108918849	108918849	+	RNA	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	108918849	108918849	G	A	SNP	NBPF5P	ENST00000357046	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	NBPF5P	HGNC	ENSG00000243967	tier1	-	-	59	0	0.00	71	15	17.44
HSPB2	0	genome.wustl.edu	37	11	111784579	111784579	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	111784579	111784579	A	T	SNP	HSPB2	ENST00000304298	human	ensembl	74_37	+1	known	missense	c.509	p.D170V	1.000	NULL	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB2	Uniprot_gn	ENSG00000170276	tier1	-	-	30	0	0.00	42	4	8.70
DMRT1	0	genome.wustl.edu	37	9	968119	968119	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	9	968119	968119	G	A	SNP	DMRT1	ENST00000382276	human	ensembl	74_37	+1	known	missense	c.1102	p.V368I	0.048	NULL	pfam_DM_DNA-bd,pfam_DMRT1-like,superfamily_DM_DNA-bd,smart_DM_DNA-bd,pfscan_DM_DNA-bd	-	no_errors	DMRT1	HGNC	ENSG00000137090	tier1	-	-	31	0	0.00	17	3	15.00
RBFOX1	0	genome.wustl.edu	37	16	7760642	7760642	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	16	7760642	7760642	G	T	SNP	RBFOX1	ENST00000311745	human	ensembl	74_37	+1	known	missense	c.1152	p.L384F	1.000	pirsf_RNA-bd_Fox-1	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328	tier1	-	-	45	0	0.00	56	11	16.42
ENSG00000221118	0	genome.wustl.edu	37	4	77414532	77414532	+	RNA	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	4	77414532	77414532	G	A	SNP	ENSG00000221118	ENST00000408191	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.005	-	-	-	no_errors	AC112249.1	Clone_based_ensembl_gene	ENSG00000221118	tier1	-	-	34	0	0.00	38	13	25.49
IFT52	0	genome.wustl.edu	37	20	42271199	42271199	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	20	42271199	42271199	C	T	SNP	IFT52	ENST00000373030	human	ensembl	74_37	+1	known	nonsense	c.1201	p.Q401*	1.000	NULL	pfam_ABC_transp_unknown	-	no_errors	IFT52	HGNC	ENSG00000101052	tier1	-	-	35	0	0.00	24	11	31.43
DSPP	0	genome.wustl.edu	37	4	88537344	88537344	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	4	88537344	88537344	G	A	SNP	DSPP	ENST00000282478	human	ensembl	74_37	+1	known	missense	c.3530	p.S1177N	0.201	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	tier1	-	-	45	0	0.00	39	8	17.02
CTBP1	0	genome.wustl.edu	37	4	1209972	1209972	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	4	1209972	1209972	G	A	SNP	CTBP1	ENST00000290921	human	ensembl	74_37	-1	known	missense	c.569	p.A190V	0.999	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom,pfam_6PGDH_NADP-bd	-	no_errors	CTBP1	HGNC	ENSG00000159692	tier1	-	-	26	0	0.00	33	4	10.81
ATG2B	0	genome.wustl.edu	37	14	96792222	96792222	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	14	96792222	96792222	T	G	SNP	ATG2B	ENST00000359933	human	ensembl	74_37	-1	known	missense	c.2201	p.H734P	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	ATG2B	HGNC	ENSG00000066739	tier1	-	-	23	0	0.00	32	16	33.33
GRM5	0	genome.wustl.edu	37	11	88583213	88583213	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	88583213	88583213	C	G	SNP	GRM5	ENST00000305447	human	ensembl	74_37	-1	known	missense	c.772	p.D258H	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_Metabotropic_Glu_rcpt_Homer-bd,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,prints_GPCR_3_mtglu_rcpt_5,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_1,pfscan_GPCR_3_C	-	no_errors	GRM5	HGNC	ENSG00000168959	tier1	-	-	35	0	0.00	47	14	22.95
NEFM	0	genome.wustl.edu	37	8	24774766	24774766	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	8	24774766	24774766	G	T	SNP	NEFM	ENST00000221166	human	ensembl	74_37	+1	known	missense	c.1398	p.K466N	1.000	NULL	pfam_IF,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	tier1	-	-	26	0	0.00	25	9	26.47
TPRXL	0	genome.wustl.edu	37	3	14105886	14105897	+	In_Frame_Del	DEL	CAGCAGCAGCCC	CAGCAGCAGCCC	-			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	CAGCAGCAGCCC	CAGCAGCAGCCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	3	14105886	14105897	CAGCAGCAGCCC	-	DEL	TPRXL	ENST00000326972	human	ensembl	74_37	+1	known	in_frame_del	c.210_221	p.PSSS74in_frame_del	0.880:0.801:0.741:0.671:0.265:0.182:0.069:0.024:0.005:0.003:0.001:0.000	NULL	NULL	-	no_errors	TPRXL	HGNC	ENSG00000180438	tier1			NA	NA	NA	NA	NA	NA
CCDC147	0	genome.wustl.edu	37	10	106209901	106209901	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	10	106209901	106209901	A	G	SNP	CCDC147	ENST00000369704	human	ensembl	74_37	+1	known	missense	c.2449	p.N817D	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	CCDC147	HGNC	ENSG00000120051	tier1	-	-	19	0	0.00	24	9	27.27
MUC1	0	genome.wustl.edu	37	1	155159745	155159745	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	1	155159745	155159745	G	A	SNP	MUC1	ENST00000368395	human	ensembl	74_37	-1	known	missense	c.1309	p.R437C	1.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC1	HGNC	ENSG00000185499	tier1	-	-	26	0	0.00	19	4	17.39
FAT3	0	genome.wustl.edu	37	11	92532352	92532352	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	11	92532352	92532352	G	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.6173	p.R2058H	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	tier1	rs199620788	-	18	0	0.00	31	8	20.51
UNC13D	0	genome.wustl.edu	37	17	73836886	73836886	+	Silent	SNP	G	G	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	17	73836886	73836886	G	T	SNP	UNC13D	ENST00000412096	human	ensembl	74_37	-1	known	silent	c.640	p.R214	0.962	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,pfam_Munc13_subgr_dom-2,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	UNC13D	HGNC	ENSG00000092929	tier1	-	-	36	0	0.00	29	4	12.12
PRIM2	0	genome.wustl.edu	37	6	57512788	57512789	+	RNA	INS	-	-	TA			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	6	57512788	57512789	-	TA	INS	PRIM2	ENST00000389488	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.034:0.053	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	tier1			8	0	0.00	7	5	41.67
DSCR9	0	genome.wustl.edu	37	21	38593692	38593692	+	RNA	SNP	C	C	T			TCGA-DX-A8BH-01A-11D-A37C-09	TCGA-DX-A8BH-11A-43D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	0b69b501-ef3d-49ee-9400-663d8455fa69	e6a33554-d90c-4e0e-96a1-c77f4d944119	21	38593692	38593692	C	T	SNP	DSCR9	ENST00000454482	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DSCR9	HGNC	ENSG00000230366	tier1	-	-	42	0	0.00	45	4	8.16
