Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FLNA	0	genome.wustl.edu	37	X	153588591	153588591	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	X	153588591	153588591	G	A	SNP	FLNA	ENST00000369850	human	ensembl	74_37	-1	known	missense	c.3572	p.A1191V	0.994	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNA	HGNC	ENSG00000196924	tier1	-	-	22	0	0.00	22	5	18.52
ZNF704	0	genome.wustl.edu	37	8	81577288	81577288	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	8	81577288	81577288	C	A	SNP	ZNF704	ENST00000327835	human	ensembl	74_37	-1	known	missense	c.689	p.G230V	1.000	NULL	pfscan_Znf_C2H2	-	no_errors	ZNF704	HGNC	ENSG00000164684	tier1	-	-	48	0	0.00	21	3	12.50
YAF2	0	genome.wustl.edu	37	12	42629563	42629563	+	RNA	DEL	A	A	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	12	42629563	42629563	A	-	DEL	YAF2	ENST00000541702	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	YAF2	HGNC	ENSG00000015153	tier1			25	0	0.00	21	4	16.00
FAP	0	genome.wustl.edu	37	2	163031447	163031447	+	Silent	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	2	163031447	163031447	G	T	SNP	FAP	ENST00000188790	human	ensembl	74_37	-1	known	silent	c.1899	p.A633	1.000	pfam_Peptidase_S9	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	tier1	-	-	42	0	0.00	29	4	12.12
IRF9	0	genome.wustl.edu	37	14	24633132	24633134	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	14	24633132	24633134	AGC	-	DEL	IRF9	ENST00000396864	human	ensembl	74_37	+1	known	in_frame_del	c.541_543	p.S184in_frame_del	0.064:0.076:0.081	NULL	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928	tier1			33	0	0.00	25	3	10.71
KIAA0895	0	genome.wustl.edu	37	7	36406403	36406403	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	7	36406403	36406403	G	A	SNP	KIAA0895	ENST00000338533	human	ensembl	74_37	-1	known	nonsense	c.49	p.R17*	0.000	NULL	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542	tier1	-	-	21	0	0.00	24	4	14.29
MERTK	0	genome.wustl.edu	37	2	112687051	112687051	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	2	112687051	112687051	G	A	SNP	MERTK	ENST00000295408	human	ensembl	74_37	+1	known	missense	c.416	p.G139E	0.940	pfam_Ig_I-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_Ig_I-set,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Rhodanese-like_dom,smart_Ig_sub,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MERTK	HGNC	ENSG00000153208	tier1	-	-	31	0	0.00	21	4	16.00
CACNA1A	0	genome.wustl.edu	37	19	13446677	13446677	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	19	13446677	13446677	G	C	SNP	CACNA1A	ENST00000360228	human	ensembl	74_37	-1	known	missense	c.1025	p.P342R	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_P/Q_a1su	-	no_errors	CACNA1A	HGNC	ENSG00000141837	tier1	-	-	75	0	0.00	57	14	19.72
TTN	0	genome.wustl.edu	37	2	179554618	179554618	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	2	179554618	179554618	C	A	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	nonsense	c.28036	p.E9346*	1.000	pfam_PPAK_motif,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	28	0	0.00	13	3	18.75
CELSR1	0	genome.wustl.edu	37	22	46782439	46782439	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	22	46782439	46782439	C	A	SNP	CELSR1	ENST00000262738	human	ensembl	74_37	-1	known	missense	c.6599	p.R2200M	0.740	pfam_DUF3497	pfam_Cadherin,pfam_DUF3497,pfam_Laminin_G,pfam_GPCR_2_secretin-like,pfam_GPS_dom,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR1	HGNC	ENSG00000075275	tier1	-	-	54	0	0.00	33	5	13.16
PPARGC1B	0	genome.wustl.edu	37	5	149227102	149227102	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	5	149227102	149227102	C	T	SNP	PPARGC1B	ENST00000309241	human	ensembl	74_37	+1	known	missense	c.3053	p.A1018V	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1B	HGNC	ENSG00000155846	tier1	-	-	46	0	0.00	31	11	26.19
LAMA3	0	genome.wustl.edu	37	18	21413940	21413940	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	18	21413940	21413940	G	T	SNP	LAMA3	ENST00000313654	human	ensembl	74_37	+1	known	missense	c.2972	p.S991I	1.000	NULL	pfam_EGF_laminin,pfam_Laminin_G,pfam_Laminin_I,pfam_Laminin_N,pfam_Laminin_II,pfam_Laminin_B_type_IV,superfamily_ConA-like_lec_gl_sf,superfamily_Growth_fac_rcpt_N_dom,superfamily_Galactose-bd-like,superfamily_STAT_TF_coiled-coil,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA3	HGNC	ENSG00000053747	tier1	-	-	36	0	0.00	13	4	23.53
DIEXF	0	genome.wustl.edu	37	1	210006614	210006614	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	1	210006614	210006614	C	T	SNP	DIEXF	ENST00000491415	human	ensembl	74_37	+1	known	missense	c.473	p.T158I	1.000	NULL	pfam_Digest_organ_expansion_fac-prd,superfamily_P-loop_NTPase	-	no_errors	DIEXF	HGNC	ENSG00000117597	tier1	-	-	34	0	0.00	42	4	8.70
ZDHHC11B	0	genome.wustl.edu	37	5	710879	710879	+	RNA	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	5	710879	710879	G	A	SNP	ZDHHC11B	ENST00000522356	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.034	-	-	-	no_errors	ZDHHC11B	HGNC	ENSG00000206077	tier1	-	-	49	0	0.00	44	6	12.00
ENSG00000215923	0	genome.wustl.edu	37	12	16562210	16562210	+	RNA	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	12	16562210	16562210	G	A	SNP	ENSG00000215923	ENST00000401104	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.015	-	-	-	no_errors	AC007528.1	Clone_based_ensembl_gene	ENSG00000215923	tier1	-	-	28	0	0.00	24	3	11.11
TTI1	0	genome.wustl.edu	37	20	36640746	36640746	+	Silent	SNP	A	A	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	20	36640746	36640746	A	T	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	silent	c.1473	p.V491	0.417	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407	tier1	-	-	32	0	0.00	25	4	13.79
RTTN	0	genome.wustl.edu	37	18	67671407	67671407	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	18	67671407	67671407	G	A	SNP	RTTN	ENST00000255674	human	ensembl	74_37	-1	known	nonsense	c.6661	p.Q2221*	0.956	NULL	superfamily_ARM-type_fold	-	no_errors	RTTN	HGNC	ENSG00000176225	tier1	-	-	51	0	0.00	24	3	11.11
GPR15	0	genome.wustl.edu	37	3	98251458	98251458	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	3	98251458	98251458	T	C	SNP	GPR15	ENST00000284311	human	ensembl	74_37	+1	known	missense	c.581	p.I194T	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srg,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_ATII_rcpt	-	no_errors	GPR15	HGNC	ENSG00000154165	tier1	-	-	39	0	0.00	32	4	11.11
MIA	0	genome.wustl.edu	37	19	41281484	41281484	+	Silent	SNP	T	T	C			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	19	41281484	41281484	T	C	SNP	MIA	ENST00000263369	human	ensembl	74_37	+1	known	silent	c.37	p.L13	0.940	NULL	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	MIA	HGNC	ENSG00000261857	tier1	-	-	31	0	0.00	35	4	10.26
PEX13	0	genome.wustl.edu	37	2	61259221	61259221	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	2	61259221	61259221	T	A	SNP	PEX13	ENST00000295030	human	ensembl	74_37	+1	known	missense	c.760	p.L254M	1.000	pfam_Peroxin-13_N	pfam_Peroxin-13_N,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	PEX13	HGNC	ENSG00000162928	tier1	-	-	42	0	0.00	27	4	12.90
UBB	0	genome.wustl.edu	37	17	16285600	16285600	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	17	16285600	16285600	G	A	SNP	UBB	ENST00000302182	human	ensembl	74_37	+1	novel	missense	c.379	p.E127K	1.000	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,smart_Ubiquitin_dom,prints_Ubiquitin,pfscan_Ubiquitin_supergroup	-	no_errors	UBB	HGNC	ENSG00000170315	tier1	-	-	113	0	0.00	72	8	9.88
NCOA3	0	genome.wustl.edu	37	20	46279815	46279823	+	In_Frame_Del	DEL	GCAGCAGCA	GCAGCAGCA	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	GCAGCAGCA	GCAGCAGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	20	46279815	46279823	GCAGCAGCA	-	DEL	NCOA3	ENST00000371998	human	ensembl	74_37	+1	known	in_frame_del	c.3741_3749	p.QQQ1251in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pirsf_Nuclear_rcpt_coactivator	pfam_Nuc_rcpt_coact_Ncoa-typ,pfam_SRC-1,pfam_PAS_fold,superfamily_PAS,superfamily_Nuc_rcpt_coact,superfamily_bHLH_dom,smart_bHLH_dom,smart_PAS,pirsf_Nuclear_rcpt_coactivator,pfscan_PAS,pfscan_bHLH_dom	-	no_errors	NCOA3	HGNC	ENSG00000124151	tier1			NA	NA	NA	NA	NA	NA
UBE3C	0	genome.wustl.edu	37	7	157013394	157013394	+	Silent	SNP	C	C	G			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	7	157013394	157013394	C	G	SNP	UBE3C	ENST00000348165	human	ensembl	74_37	+1	known	silent	c.1926	p.L642	0.970	NULL	pfam_HECT,superfamily_HECT,superfamily_DHFR-like_dom,smart_IQ_motif_EF-hand-BS,smart_HECT,pfscan_HECT,pfscan_IQ_motif_EF-hand-BS	-	no_errors	UBE3C	HGNC	ENSG00000009335	tier1	-	-	41	0	0.00	48	10	17.24
ABCA13	0	genome.wustl.edu	37	7	48411945	48411945	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	7	48411945	48411945	G	A	SNP	ABCA13	ENST00000435803	human	ensembl	74_37	+1	known	missense	c.10984	p.V3662I	0.009	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	tier1	-	-	35	0	0.00	49	6	10.91
KIF9-AS1	0	genome.wustl.edu	37	3	47281372	47281372	+	RNA	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	3	47281372	47281372	G	A	SNP	KIF9-AS1	ENST00000429315	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	KIF9-AS1	HGNC	ENSG00000227398	tier1	rs140593426	-	44	0	0.00	38	7	15.56
CANX	0	genome.wustl.edu	37	5	179132824	179132824	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	5	179132824	179132824	G	T	SNP	CANX	ENST00000415618	human	ensembl	74_37	+1	known	missense	c.247	p.D83Y	0.976	NULL	pfam_Calret/calnex,superfamily_ConA-like_lec_gl_sf,superfamily_Calreticulin/calnexin_P_dom,prints_Calret/calnex	-	no_errors	CANX	HGNC	ENSG00000127022	tier1	-	-	36	0	0.00	29	4	12.12
SCGN	0	genome.wustl.edu	37	6	25661862	25661862	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	6	25661862	25661862	G	A	SNP	SCGN	ENST00000377961	human	ensembl	74_37	+1	known	missense	c.236	p.R79Q	0.190	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SCGN	HGNC	ENSG00000079689	tier1	-	-	45	0	0.00	43	8	15.69
NT5DC3	0	genome.wustl.edu	37	12	104181307	104181307	+	Splice_Site	SNP	T	T	G			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	12	104181307	104181307	T	G	SNP	NT5DC3	ENST00000392876	human	ensembl	74_37	-1	known	splice_site	c.1102-2	e11-2	0.999	-	-	-	no_errors	NT5DC3	HGNC	ENSG00000111696	tier1	-	-	12	0	0.00	14	4	22.22
KANSL1	0	genome.wustl.edu	37	17	44144936	44144936	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	17	44144936	44144936	G	T	SNP	KANSL1	ENST00000262419	human	ensembl	74_37	-1	known	missense	c.1631	p.P544H	1.000	NULL	NULL	-	no_errors	KANSL1	HGNC	ENSG00000120071	tier1	-	-	31	0	0.00	20	3	13.04
CBLN2	0	genome.wustl.edu	37	18	70209247	70209247	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	18	70209247	70209247	C	T	SNP	CBLN2	ENST00000269503	human	ensembl	74_37	-1	known	missense	c.149	p.R50Q	0.998	NULL	pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CBLN2	HGNC	ENSG00000141668	tier1	-	-	33	0	0.00	22	3	12.00
NPY4R	0	genome.wustl.edu	37	10	47087160	47087160	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	10	47087160	47087160	C	T	SNP	NPY4R	ENST00000374312	human	ensembl	74_37	+1	known	missense	c.377	p.T126M	0.997	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_NPY4_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt	-	no_errors	NPY4R	HGNC	ENSG00000204174	tier1	rs149694580	-	57	0	0.00	37	4	9.76
PRKXP1	0	genome.wustl.edu	37	15	101088125	101088126	+	RNA	INS	-	-	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	15	101088125	101088126	-	T	INS	PRKXP1	ENST00000602585	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RP11-526I2.5	Clone_based_vega_gene	ENSG00000270127	tier1			9	0	0.00	7	4	36.36
ANKRD62	0	genome.wustl.edu	37	18	12126346	12126346	+	Silent	SNP	A	A	G			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	18	12126346	12126346	A	G	SNP	ANKRD62	ENST00000314074	human	ensembl	74_37	+1	known	silent	c.2484	p.R828	0.005	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD62	HGNC	ENSG00000181626	tier1	-	-	41	0	0.00	31	6	16.22
WDR66	0	genome.wustl.edu	37	12	122359385	122359385	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	12	122359385	122359385	C	-	DEL	WDR66	ENST00000288912	human	ensembl	74_37	+1	known	frame_shift_del	c.174	p.E59fs	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	tier1			23	0	0.00	20	4	16.67
CDK18	0	genome.wustl.edu	37	1	205501365	205501365	+	RNA	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	1	205501365	205501365	G	T	SNP	CDK18	ENST00000509056	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	CDK18	HGNC	ENSG00000117266	tier1	-	-	35	0	0.00	23	10	30.30
PHIP	0	genome.wustl.edu	37	6	79752576	79752576	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	6	79752576	79752576	C	T	SNP	PHIP	ENST00000275034	human	ensembl	74_37	-1	known	missense	c.584	p.G195D	1.000	pfam_WD40_repeat,superfamily_Quinonprotein_ADH-like_supfam,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quinonprotein_ADH-like_supfam,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	PHIP	HGNC	ENSG00000146247	tier1	-	-	44	0	0.00	45	4	8.16
BCAR3	0	genome.wustl.edu	37	1	94032937	94032937	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	1	94032937	94032937	T	-	DEL	BCAR3	ENST00000260502	human	ensembl	74_37	-1	known	frame_shift_del	c.2198	p.N733fs	0.995	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,pfscan_RasGRF_CDC25	-	no_errors	BCAR3	HGNC	ENSG00000137936	tier1			29	0	0.00	34	3	8.11
ENSG00000258437	0	genome.wustl.edu	37	14	91142581	91142582	+	RNA	INS	-	-	GAAATTAACT			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	14	91142581	91142582	-	GAAATTAACT	INS	ENSG00000258437	ENST00000554967	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.000	-	-	-	no_errors	RP11-661G16.1	Clone_based_vega_gene	ENSG00000258437	tier1			NA	NA	NA	NA	NA	NA
RASGEF1B	0	genome.wustl.edu	37	4	82355797	82355797	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	4	82355797	82355797	A	T	SNP	RASGEF1B	ENST00000264400	human	ensembl	74_37	-1	known	missense	c.1196	p.F399Y	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1B	HGNC	ENSG00000138670	tier1	-	-	52	0	0.00	39	10	20.41
GFRAL	0	genome.wustl.edu	37	6	55196591	55196591	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	6	55196591	55196591	A	T	SNP	GFRAL	ENST00000340465	human	ensembl	74_37	+1	known	missense	c.101	p.D34V	0.164	smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1	-	no_errors	GFRAL	HGNC	ENSG00000187871	tier1	-	-	47	0	0.00	30	4	11.76
CHST4	0	genome.wustl.edu	37	16	71570964	71570964	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	16	71570964	71570964	C	A	SNP	CHST4	ENST00000338482	human	ensembl	74_37	+1	known	missense	c.384	p.N128K	0.130	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase,pirsf_Carbohydrate_sulfotransferase	-	no_errors	CHST4	HGNC	ENSG00000140835	tier1	-	-	43	0	0.00	36	5	12.20
ENSG00000215954	0	genome.wustl.edu	37	11	112118610	112118619	+	RNA	DEL	ACACACACAC	ACACACACAC	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	ACACACACAC	ACACACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	11	112118610	112118619	ACACACACAC	-	DEL	ENSG00000215954	ENST00000401135	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.028:0.021:0.024:0.025:0.042:0.052:0.057:0.059:0.067:0.070	-	-	-	no_errors	AP002884.1	Clone_based_ensembl_gene	ENSG00000215954	tier1			NA	NA	NA	NA	NA	NA
ZBTB12	0	genome.wustl.edu	37	6	31868083	31868083	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	6	31868083	31868083	T	C	SNP	ZBTB12	ENST00000375527	human	ensembl	74_37	-1	known	missense	c.1000	p.K334E	0.998	smart_Znf_C2H2-like	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB12	HGNC	ENSG00000204366	tier1	-	-	49	0	0.00	33	4	10.81
TOP2B	0	genome.wustl.edu	37	3	25675377	25675377	+	Silent	SNP	T	T	C			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	3	25675377	25675377	T	C	SNP	TOP2B	ENST00000264331	human	ensembl	74_37	-1	known	silent	c.981	p.K327	1.000	pfam_Topo_IIA_bsu_dom2,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	pfam_Topo_IIA_A/C,pfam_Topo_IIA_bsu_dom2,pfam_DTHCT,pfam_HATPase_ATP-bd,superfamily_Topo_IIA_like_dom,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_Topo_IIA,smart_Topo_IIA_A/C,prints_TopoII_euk,prints_Topo_IIA,prints_Transcrpt_fac_NFYB/HAP3	-	no_errors	TOP2B	HGNC	ENSG00000077097	tier1	-	-	33	0	0.00	17	3	15.00
COL17A1	0	genome.wustl.edu	37	10	105830313	105830313	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	10	105830313	105830313	C	T	SNP	COL17A1	ENST00000353479	human	ensembl	74_37	-1	known	missense	c.478	p.D160N	1.000	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC	ENSG00000065618	tier1	-	-	39	0	0.00	29	5	14.71
PCDHB6	0	genome.wustl.edu	37	5	140531451	140531451	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	5	140531451	140531451	C	T	SNP	PCDHB6	ENST00000231136	human	ensembl	74_37	+1	known	missense	c.1613	p.A538V	0.485	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB6	HGNC	ENSG00000113211	tier1	-	-	186	1	0.53	145	42	22.46
SORCS3	0	genome.wustl.edu	37	10	106974338	106974338	+	Silent	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	10	106974338	106974338	G	A	SNP	SORCS3	ENST00000369701	human	ensembl	74_37	+1	known	silent	c.2514	p.G838	0.914	pfam_PKD_dom,superfamily_PKD_dom	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,pfscan_PKD_dom	-	no_errors	SORCS3	HGNC	ENSG00000156395	tier1	-	-	31	0	0.00	28	4	12.50
AKAP11	0	genome.wustl.edu	37	13	42873842	42873843	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	GG	GG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	13	42873842	42873843	GG	-	DEL	AKAP11	ENST00000025301	human	ensembl	74_37	+1	known	frame_shift_del	c.960_961	p.D321fs	0.995:1.000	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	tier1			17	0	0.00	17	2	10.53
ST3GAL6	0	genome.wustl.edu	37	3	98489969	98489969	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	3	98489969	98489969	A	T	SNP	ST3GAL6	ENST00000469105	human	ensembl	74_37	+1	known	missense	c.172	p.S58C	0.044	NULL	NULL	-	no_errors	ST3GAL6	HGNC	ENSG00000064225	tier1	-	-	33	0	0.00	26	8	23.53
KDM6B	0	genome.wustl.edu	37	17	7750177	7750178	+	In_Frame_Ins	INS	-	-	ACCACC			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	17	7750177	7750178	-	ACCACC	INS	KDM6B	ENST00000254846	human	ensembl	74_37	+1	known	in_frame_ins	c.752_753	p.255in_frame_insPP	0.470:0.528	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	KDM6B	HGNC	ENSG00000132510	tier1			NA	NA	NA	NA	NA	NA
GDF3	0	genome.wustl.edu	37	12	7843124	7843124	+	Silent	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	12	7843124	7843124	G	A	SNP	GDF3	ENST00000329913	human	ensembl	74_37	-1	known	silent	c.445	p.L149	0.850	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C,prints_Inhibin_asu	-	no_errors	GDF3	HGNC	ENSG00000184344	tier1	-	-	27	0	0.00	25	6	19.35
TRANK1	0	genome.wustl.edu	37	3	36874693	36874693	+	Silent	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	3	36874693	36874693	G	A	SNP	TRANK1	ENST00000429976	human	ensembl	74_37	-1	known	silent	c.6249	p.C2083	1.000	NULL	pfam_UvrD-like_ATP-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom	-	no_errors	TRANK1	HGNC	ENSG00000168016	tier1	-	-	39	0	0.00	20	3	13.04
GBE1	0	genome.wustl.edu	37	3	81586138	81586138	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	3	81586138	81586138	C	T	SNP	GBE1	ENST00000429644	human	ensembl	74_37	-1	known	missense	c.1727	p.R576H	1.000	superfamily_Glycoside_hydrolase_SF	pfam_A-amylase_b_C,pfam_Glyco_hydro_13_cat_dom,pfam_Glyco_hydro_13_N,superfamily_Glycoside_hydrolase_SF,superfamily_Ig_E-set,smart_Glyco_hydro_13_sub_cat_dom	-	no_errors	GBE1	HGNC	ENSG00000114480	tier1	-	-	24	0	0.00	14	4	22.22
SALL1	0	genome.wustl.edu	37	16	51185193	51185193	+	RNA	DEL	A	A	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	16	51185193	51185193	A	-	DEL	SALL1	ENST00000562674	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SALL1	HGNC	ENSG00000103449	tier1			48	0	0.00	22	3	12.00
CUZD1	0	genome.wustl.edu	37	10	124594289	124594289	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	10	124594289	124594289	G	T	SNP	CUZD1	ENST00000368904	human	ensembl	74_37	-1	known	missense	c.1315	p.L439I	0.730	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	pfam_ZP_dom,pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,smart_ZP_dom,pfscan_CUB_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	CUZD1	HGNC	ENSG00000138161	tier1	-	-	43	0	0.00	37	4	9.76
ANPEP	0	genome.wustl.edu	37	15	90348420	90348420	+	Silent	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	15	90348420	90348420	G	T	SNP	ANPEP	ENST00000300060	human	ensembl	74_37	-1	known	silent	c.786	p.P262	0.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ANPEP	HGNC	ENSG00000166825	tier1	-	-	76	0	0.00	63	9	12.16
DOCK7	0	genome.wustl.edu	37	1	63084514	63084514	+	Silent	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	1	63084514	63084514	G	T	SNP	DOCK7	ENST00000251157	human	ensembl	74_37	-1	known	silent	c.1545	p.P515	0.992	NULL	pfam_DOCK_C,pfam_DOCK_C/D_N,superfamily_ARM-type_fold	-	no_errors	DOCK7	HGNC	ENSG00000116641	tier1	-	-	49	0	0.00	19	3	13.64
FAM47B	0	genome.wustl.edu	37	X	34961058	34961058	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	X	34961058	34961058	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.110	p.R37H	0.009	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	tier1	-	-	31	0	0.00	17	5	22.73
SCAMP1	0	genome.wustl.edu	37	5	77772627	77772628	+	RNA	INS	-	-	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	5	77772627	77772628	-	A	INS	SCAMP1	ENST00000320280	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.258:0.109	-	-	-	no_errors	SCAMP1	HGNC	ENSG00000085365	tier1			21	0	0.00	18	3	14.29
RPS3A	0	genome.wustl.edu	37	4	152024138	152024138	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	4	152024138	152024138	A	C	SNP	RPS3A	ENST00000274065	human	ensembl	74_37	+1	known	missense	c.470	p.Q157P	1.000	pfam_Ribosomal_S3Ae	pfam_Ribosomal_S3Ae	-	no_errors	RPS3A	HGNC	ENSG00000145425	tier1	rs139979828	-	24	0	0.00	16	4	20.00
DCAF11	0	genome.wustl.edu	37	14	24587326	24587326	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	14	24587326	24587326	A	G	SNP	DCAF11	ENST00000446197	human	ensembl	74_37	+1	known	missense	c.539	p.Y180C	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_WD_repeat_p23,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	DCAF11	HGNC	ENSG00000100897	tier1	-	-	38	0	0.00	19	11	36.67
SPATA31D1	0	genome.wustl.edu	37	9	84606727	84606727	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	9	84606727	84606727	C	A	SNP	SPATA31D1	ENST00000344803	human	ensembl	74_37	+1	known	missense	c.1342	p.L448I	0.000	NULL	NULL	-	no_errors	SPATA31D1	HGNC	ENSG00000214929	tier1	-	-	75	0	0.00	62	18	22.50
C12orf44	0	genome.wustl.edu	37	12	52467507	52467507	+	Silent	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	12	52467507	52467507	C	T	SNP	C12orf44	ENST00000336854	human	ensembl	74_37	+1	known	silent	c.73	p.L25	1.000	pfam_ATG101	pfam_ATG101	-	no_errors	C12orf44	HGNC	ENSG00000123395	tier1	-	-	21	0	0.00	12	3	20.00
SLFN5	0	genome.wustl.edu	37	17	33592322	33592322	+	Silent	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	17	33592322	33592322	C	T	SNP	SLFN5	ENST00000299977	human	ensembl	74_37	+1	known	silent	c.2091	p.P697	0.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA-4,pfam_DUF2075,superfamily_P-loop_NTPase	-	no_errors	SLFN5	HGNC	ENSG00000166750	tier1	-	-	23	0	0.00	29	6	17.14
DLEC1	0	genome.wustl.edu	37	3	38162039	38162040	+	Frame_Shift_Del	DEL	GA	GA	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	3	38162039	38162040	GA	-	DEL	DLEC1	ENST00000346219	human	ensembl	74_37	+1	known	frame_shift_del	c.4805_4806	p.E1605fs	0.920:0.015	NULL	superfamily_PapD-like	-	no_errors	DLEC1	HGNC	ENSG00000008226	tier1			27	0	0.00	30	3	9.09
TNKS2	0	genome.wustl.edu	37	10	93601945	93601946	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	10	93601945	93601946	-	A	INS	TNKS2	ENST00000371627	human	ensembl	74_37	+1	known	frame_shift_ins	c.1856_1857	p.N622fs	1.000:0.997	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom,prints_Ankyrin_rpt	-	no_errors	TNKS2	HGNC	ENSG00000107854	tier1			50	0	0.00	40	5	11.11
AHNAK2	0	genome.wustl.edu	37	14	105419754	105419754	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	14	105419754	105419754	G	-	DEL	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	frame_shift_del	c.2034	p.K679fs	0.215	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	tier1			106	0	0.00	83	14	14.43
ENSG00000203849	0	genome.wustl.edu	37	1	142720897	142720898	+	RNA	INS	-	-	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	1	142720897	142720898	-	A	INS	ENSG00000203849	ENST00000595144	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.135:0.096	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849	tier1			33	0	0.00	32	4	11.11
CAPN1	0	genome.wustl.edu	37	11	64972271	64972271	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	11	64972271	64972271	G	A	SNP	CAPN1	ENST00000279247	human	ensembl	74_37	+1	known	missense	c.1283	p.R428H	1.000	pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Calpain_III	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,pfscan_EF_hand_dom,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN1	HGNC	ENSG00000014216	tier1	-	-	35	0	0.00	31	4	11.43
GAREML	0	genome.wustl.edu	37	2	26410411	26410411	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	2	26410411	26410411	C	T	SNP	GAREML	ENST00000401533	human	ensembl	74_37	+1	known	missense	c.1910	p.A637V	0.868	NULL	superfamily_SAM/pointed	-	no_errors	GAREML	HGNC	ENSG00000157833	tier1	-	-	42	0	0.00	45	4	8.16
ENSG00000233825	0	genome.wustl.edu	37	10	32635990	32635990	+	RNA	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	10	32635990	32635990	C	T	SNP	ENSG00000233825	ENST00000412085	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.988	-	-	-	no_errors	RP11-135A24.4	Clone_based_vega_gene	ENSG00000233825	tier1	-	-	36	0	0.00	37	4	9.76
ENSG00000224643	0	genome.wustl.edu	37	2	183948142	183948142	+	RNA	DEL	T	T	-			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	2	183948142	183948142	T	-	DEL	ENSG00000224643	ENST00000444562	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC064871.3	Clone_based_vega_gene	ENSG00000224643	tier1			25	0	0.00	11	3	21.43
SYTL2	0	genome.wustl.edu	37	11	85436022	85436022	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	11	85436022	85436022	G	A	SNP	SYTL2	ENST00000359152	human	ensembl	74_37	-1	known	missense	c.3050	p.T1017M	0.000	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	-	no_errors	SYTL2	HGNC	ENSG00000137501	tier1	rs201893430	-	37	0	0.00	22	5	18.52
ESRP1	0	genome.wustl.edu	37	8	95680252	95680252	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	8	95680252	95680252	C	T	SNP	ESRP1	ENST00000433389	human	ensembl	74_37	+1	known	missense	c.1007	p.T336M	0.995	smart_RRM_dom,pfscan_RRM_dom	superfamily_RNaseH-like_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ESRP1	HGNC	ENSG00000104413	tier1	-	-	26	0	0.00	18	3	14.29
LINC00266-1	0	genome.wustl.edu	37	20	62934877	62934877	+	RNA	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	20	62934877	62934877	C	T	SNP	LINC00266-1	ENST00000279067	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.886	-	-	-	no_errors	LINC00266-1	HGNC	ENSG00000149656	tier1	-	-	39	0	0.00	24	4	14.29
SF3B1	0	genome.wustl.edu	37	2	198265477	198265477	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	2	198265477	198265477	C	G	SNP	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	missense	c.2680	p.D894H	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	tier1	-	-	34	0	0.00	14	4	22.22
PPP1R37	0	genome.wustl.edu	37	19	45645655	45645655	+	Silent	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	19	45645655	45645655	G	A	SNP	PPP1R37	ENST00000221462	human	ensembl	74_37	+1	known	silent	c.813	p.L271	1.000	smart_Leu-rich_rpt_RNase_inh_sub-typ	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	PPP1R37	HGNC	ENSG00000104866	tier1	-	-	38	0	0.00	39	4	9.30
GALNT18	0	genome.wustl.edu	37	11	11348716	11348716	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	11	11348716	11348716	G	T	SNP	GALNT18	ENST00000227756	human	ensembl	74_37	-1	known	missense	c.1429	p.L477M	1.000	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	GALNT18	HGNC	ENSG00000110328	tier1	-	-	42	0	0.00	21	3	12.50
PATL1	0	genome.wustl.edu	37	11	59423447	59423447	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	11	59423447	59423447	C	A	SNP	PATL1	ENST00000300146	human	ensembl	74_37	-1	known	missense	c.795	p.Q265H	1.000	pfam_Topo_II-assoc_PAT1	pfam_Topo_II-assoc_PAT1	-	no_errors	PATL1	HGNC	ENSG00000166889	tier1	-	-	38	0	0.00	39	4	9.30
LINC01001	0	genome.wustl.edu	37	11	134722	134722	+	RNA	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	11	134722	134722	G	T	SNP	LINC01001	ENST00000527683	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.193	-	-	-	no_errors	LINC01001	HGNC	ENSG00000230724	tier1	-	-	8	0	0.00	5	4	44.44
ZNF232	0	genome.wustl.edu	37	17	5009410	5009410	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	17	5009410	5009410	C	A	SNP	ZNF232	ENST00000250076	human	ensembl	74_37	-1	known	missense	c.1044	p.Q348H	0.287	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF232	HGNC	ENSG00000167840	tier1	-	-	26	0	0.00	16	3	15.79
NLRC4	0	genome.wustl.edu	37	2	32449835	32449835	+	Splice_Site	SNP	C	C	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	2	32449835	32449835	C	T	SNP	NLRC4	ENST00000360906	human	ensembl	74_37	-1	known	splice_site	c.2783-1	e8-1	0.686	-	-	-	no_errors	NLRC4	HGNC	ENSG00000091106	tier1	-	-	52	0	0.00	24	4	14.29
TMX4	0	genome.wustl.edu	37	20	7962918	7962918	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	20	7962918	7962918	G	T	SNP	TMX4	ENST00000246024	human	ensembl	74_37	-1	known	missense	c.1030	p.H344N	0.012	NULL	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	TMX4	HGNC	ENSG00000125827	tier1	-	-	24	0	0.00	27	4	12.90
PCLO	0	genome.wustl.edu	37	7	82578847	82578847	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	7	82578847	82578847	C	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.11057	p.S3686I	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	34	0	0.00	8	14	63.64
NUDCD2	0	genome.wustl.edu	37	5	162884088	162884089	+	Splice_Site	INS	-	-	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	5	162884088	162884089	-	A	INS	NUDCD2	ENST00000302764	human	ensembl	74_37	-1	known	splice_site_ins	c.239-3_239-2	e3-2	0.984:0.001	-	-	-	no_errors	NUDCD2	HGNC	ENSG00000170584	tier1			40	0	0.00	21	3	12.50
MGA	0	genome.wustl.edu	37	15	41989180	41989180	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	15	41989180	41989180	G	T	SNP	MGA	ENST00000219905	human	ensembl	74_37	+1	known	nonsense	c.1972	p.E658*	1.000	NULL	pfam_TF_T-box,pfam_bHLH_dom,superfamily_p53-like_TF_DNA-bd,superfamily_bHLH_dom,smart_TF_T-box,smart_bHLH_dom,pfscan_bHLH_dom,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	tier1	-	-	49	0	0.00	46	4	8.00
ENSG00000266999	0	genome.wustl.edu	37	17	34236276	34236276	+	RNA	SNP	G	G	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	17	34236276	34236276	G	A	SNP	ENSG00000266999	ENST00000587132	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AC015849.16	Clone_based_vega_gene	ENSG00000266999	tier1	-	-	49	0	0.00	18	3	14.29
NADSYN1	0	genome.wustl.edu	37	11	71194034	71194034	+	Silent	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	11	71194034	71194034	G	T	SNP	NADSYN1	ENST00000319023	human	ensembl	74_37	+1	known	silent	c.1290	p.R430	0.981	pfam_NAD/GMP_synthase,pirsf_Gln-dep_NAD_synthase,tigrfam_NAD_synthase	pfam_C-N_Hydrolase,pfam_NAD/GMP_synthase,superfamily_C-N_Hydrolase,pirsf_Gln-dep_NAD_synthase,pfscan_C-N_Hydrolase,tigrfam_NAD_synthase	-	no_errors	NADSYN1	HGNC	ENSG00000172890	tier1	-	-	26	0	0.00	17	4	19.05
MAP3K19	0	genome.wustl.edu	37	2	135743708	135743708	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	2	135743708	135743708	G	T	SNP	MAP3K19	ENST00000375845	human	ensembl	74_37	-1	known	missense	c.2734	p.Q912K	0.006	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	MAP3K19	HGNC	ENSG00000176601	tier1	-	-	42	0	0.00	28	4	12.50
GABRA4	0	genome.wustl.edu	37	4	46930612	46930612	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BQ-01A-11D-A37C-09	TCGA-DX-A8BQ-10A-01D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3dc625e-3727-4265-87d7-9b2cf9404411	1fa50414-25db-4f96-a54c-62ff61f5f552	4	46930612	46930612	C	A	SNP	GABRA4	ENST00000264318	human	ensembl	74_37	-1	known	missense	c.1295	p.S432I	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABBAa4_rcpt,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,prints_GABBAa4_rcpt,prints_GABAA_rcpt,prints_Neur_channel,prints_GABBAg_rcpt,tigrfam_Neur_channel	-	no_errors	GABRA4	HGNC	ENSG00000109158	tier1	-	-	40	0	0.00	38	6	13.33
