Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
NLRP9	0	genome.wustl.edu	37	19	56243494	56243494	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	19	56243494	56243494	A	T	SNP	NLRP9	ENST00000332836	human	ensembl	74_37	-1	known	missense	c.1703	p.V568D	0.001	NULL	pfam_DAPIN,superfamily_DEATH-like_dom,superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN	-	no_errors	NLRP9	HGNC	ENSG00000185792	tier1	-	-	38	0	0.00	66	16	19.51
CBFA2T2	0	genome.wustl.edu	37	20	32217653	32217653	+	Silent	SNP	G	G	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	20	32217653	32217653	G	C	SNP	CBFA2T2	ENST00000346541	human	ensembl	74_37	+1	known	silent	c.1188	p.L396	0.991	pfam_NHR2	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699	tier1	-	-	24	0	0.00	49	19	27.94
DOC2A	0	genome.wustl.edu	37	16	30017947	30017947	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	16	30017947	30017947	C	G	SNP	DOC2A	ENST00000350119	human	ensembl	74_37	-1	known	missense	c.930	p.K310N	1.000	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Doc2,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pirsf_Doc2,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_dom	-	no_errors	DOC2A	HGNC	ENSG00000149927	tier1	-	-	27	0	0.00	64	7	9.86
GPRC6A	0	genome.wustl.edu	37	6	117113915	117113915	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	6	117113915	117113915	A	G	SNP	GPRC6A	ENST00000310357	human	ensembl	74_37	-1	known	missense	c.2171	p.I724T	0.001	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_GPCR_3_C,pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_vmron_rcpt_2	-	no_errors	GPRC6A	HGNC	ENSG00000173612	tier1	-	-	30	0	0.00	23	6	20.69
ZNF99	0	genome.wustl.edu	37	19	22942486	22942486	+	Splice_Site	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	19	22942486	22942486	T	A	SNP	ZNF99	ENST00000397104	human	ensembl	74_37	-1	known	splice_site	c.290-2	e4-2	0.163	-	-	-	no_errors	ZNF99	HGNC	ENSG00000213973	tier1	-	-	17	0	0.00	38	14	26.92
OR5AS1	0	genome.wustl.edu	37	11	55798716	55798716	+	Silent	SNP	G	G	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	11	55798716	55798716	G	T	SNP	OR5AS1	ENST00000313555	human	ensembl	74_37	+1	known	silent	c.822	p.V274	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AS1	HGNC	ENSG00000181785	tier1	-	-	34	0	0.00	70	8	10.26
COL6A5	0	genome.wustl.edu	37	3	130113771	130113771	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	3	130113771	130113771	G	T	SNP	COL6A5	ENST00000265379	human	ensembl	74_37	+1	known	missense	c.3031	p.D1011Y	0.999	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	tier1	-	-	29	0	0.00	39	5	11.36
CBFA2T2	0	genome.wustl.edu	37	20	32216176	32216176	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	20	32216176	32216176	G	A	SNP	CBFA2T2	ENST00000346541	human	ensembl	74_37	+1	known	missense	c.994	p.D332N	1.000	pfam_NHR2	pfam_NHR2,pfam_TAFH_NHR1,pfam_Znf_MYND,smart_TAFH_NHR1,pfscan_TAFH_NHR1,pfscan_Znf_MYND,prints_ETO,prints_MTGR1	-	no_errors	CBFA2T2	HGNC	ENSG00000078699	tier1	-	-	33	0	0.00	63	24	27.59
SPINK5	0	genome.wustl.edu	37	5	147506574	147506574	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	5	147506574	147506574	C	T	SNP	SPINK5	ENST00000359874	human	ensembl	74_37	+1	known	missense	c.2986	p.L996F	0.000	smart_Kazal_dom	pfam_Kazal_dom,smart_Kazal_dom	-	no_errors	SPINK5	HGNC	ENSG00000133710	tier1	-	-	18	0	0.00	26	24	48.00
FAM157B	0	genome.wustl.edu	37	9	141107563	141107563	+	RNA	SNP	A	A	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	9	141107563	141107563	A	T	SNP	FAM157B	ENST00000446912	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.171	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	tier1	-	-	42	0	0.00	24	9	27.27
HSPG2	0	genome.wustl.edu	37	1	22156635	22156635	+	RNA	SNP	G	G	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	22156635	22156635	G	A	SNP	HSPG2	ENST00000486901	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HSPG2	HGNC	ENSG00000142798	tier1	-	-	49	0	0.00	52	22	29.33
FERD3L	0	genome.wustl.edu	37	7	19184906	19184906	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	7	19184906	19184906	C	T	SNP	FERD3L	ENST00000275461	human	ensembl	74_37	-1	known	missense	c.80	p.R27H	0.027	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	FERD3L	HGNC	ENSG00000146618	tier1	-	-	37	0	0.00	89	8	8.25
GRAMD1A	0	genome.wustl.edu	37	19	35491326	35491327	+	RNA	INS	-	-	GCCCT			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	19	35491326	35491327	-	GCCCT	INS	GRAMD1A	ENST00000603669	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.780:0.776	-	-	-	no_errors	GRAMD1A	HGNC	ENSG00000089351	tier1			NA	NA	NA	NA	NA	NA
YTHDF2	0	genome.wustl.edu	37	1	29063572	29063574	+	RNA	DEL	GCC	GCC	-			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	GCC	GCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	29063572	29063574	GCC	-	DEL	YTHDF2	ENST00000478283	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.999:0.990	-	-	-	no_errors	YTHDF2	HGNC	ENSG00000198492	tier1			10	0	0.00	13	2	13.33
COX11	0	genome.wustl.edu	37	17	53045891	53045891	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	17	53045891	53045891	C	A	SNP	COX11	ENST00000299335	human	ensembl	74_37	-1	known	missense	c.117	p.E39D	0.000	NULL	pfam_Cyt_c_oxidase_assmbl_CtaG,superfamily_CtaG/Cox11_dom	-	no_errors	COX11	HGNC	ENSG00000166260	tier1	-	-	60	0	0.00	95	24	20.17
CD3G	0	genome.wustl.edu	37	11	118221340	118221340	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	11	118221340	118221340	C	A	SNP	CD3G	ENST00000532917	human	ensembl	74_37	+1	known	missense	c.381	p.F127L	0.980	NULL	pfam_Phos_immunorcpt_sig_ITAM,smart_Ig_sub2,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD3G	HGNC	ENSG00000160654	tier1	-	-	42	0	0.00	43	4	8.51
PEG3	0	genome.wustl.edu	37	19	57327276	57327276	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	19	57327276	57327276	C	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.2534	p.R845I	0.014	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	tier1	-	-	15	0	0.00	48	10	17.24
MYBPH	0	genome.wustl.edu	37	1	203141135	203141135	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	203141135	203141135	C	T	SNP	MYBPH	ENST00000255416	human	ensembl	74_37	-1	known	missense	c.542	p.R181H	1.000	superfamily_Fibronectin_type3,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYBPH	HGNC	ENSG00000133055	tier1	-	-	30	0	0.00	21	27	56.25
GOLGA6L4	0	genome.wustl.edu	37	15	82932257	82932288	+	RNA	DEL	ACACAAATAAATTTAAACTATAAATTAGAAAC	ACACAAATAAATTTAAACTATAAATTAGAAAC	-			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	ACACAAATAAATTTAAACTATAAATTAGAAAC	ACACAAATAAATTTAAACTATAAATTAGAAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	15	82932257	82932288	ACACAAATAAATTTAAACTATAAATTAGAAAC	-	DEL	GOLGA6L4	ENST00000560844	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.140:0.148:0.154:0.160:0.165:0.169:0.172:0.175:0.177:0.178:0.179:0.179:0.180:0.179:0.135:0.131:0.126:0.121:0.112:0.097:0.077:0.050:0.041:0.040:0.045:0.047:0.048:0.046:0.049:0.052:0.050:0.046	-	-	-	no_errors	RP13-996F3.5	Clone_based_vega_gene	ENSG00000215749	tier1			NA	NA	NA	NA	NA	NA
ENSG00000215953	0	genome.wustl.edu	37	5	84823864	84823864	+	RNA	SNP	A	A	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	5	84823864	84823864	A	G	SNP	ENSG00000215953	ENST00000401134	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.005	-	-	-	no_errors	AC026700.1	Clone_based_ensembl_gene	ENSG00000215953	tier1	rs199705000	-	22	0	0.00	18	6	25.00
PHACTR1	0	genome.wustl.edu	37	6	12934035	12934035	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	6	12934035	12934035	C	A	SNP	PHACTR1	ENST00000379348	human	ensembl	74_37	+1	known	missense	c.421	p.Q141K	0.013	NULL	NULL	-	no_errors	PHACTR1	HGNC	ENSG00000112137	tier1	-	-	53	0	0.00	79	10	11.24
CDYL	0	genome.wustl.edu	37	6	4935802	4935802	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	6	4935802	4935802	A	G	SNP	CDYL	ENST00000328908	human	ensembl	74_37	+1	known	missense	c.907	p.T303A	1.000	NULL	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL	HGNC	ENSG00000153046	tier1	-	-	41	0	0.00	45	20	30.77
COL27A1	0	genome.wustl.edu	37	9	117031280	117031281	+	RNA	INS	-	-	TGGTGT			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	9	117031280	117031281	-	TGGTGT	INS	COL27A1	ENST00000477421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010:0.009	-	-	-	no_errors	COL27A1	HGNC	ENSG00000196739	tier1			NA	NA	NA	NA	NA	NA
TBC1D29	0	genome.wustl.edu	37	17	28887667	28887667	+	Silent	SNP	T	T	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	17	28887667	28887667	T	C	SNP	TBC1D29	ENST00000579181	human	ensembl	74_37	+1	known	silent	c.111	p.D37	1.000	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	superfamily_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D29	HGNC	ENSG00000266733	tier1	rs78888987	-	41	0	0.00	53	8	13.11
CXorf23	0	genome.wustl.edu	37	X	19955616	19955616	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	X	19955616	19955616	T	A	SNP	CXorf23	ENST00000379682	human	ensembl	74_37	-1	novel	missense	c.1780	p.N594Y	0.007	NULL	NULL	-	no_errors	CXorf23	HGNC	ENSG00000173681	tier1	-	-	100	0	0.00	183	47	20.43
AHNAK2	0	genome.wustl.edu	37	14	105410494	105410494	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	14	105410494	105410494	G	C	SNP	AHNAK2	ENST00000333244	human	ensembl	74_37	-1	known	missense	c.11294	p.S3765C	0.001	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	AHNAK2	HGNC	ENSG00000185567	tier1	-	-	78	0	0.00	44	74	62.71
SPEG	0	genome.wustl.edu	37	2	220330668	220330669	+	RNA	INS	-	-	GT			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	2	220330668	220330669	-	GT	INS	SPEG	ENST00000462545	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.003	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195	tier1			25	0	0.00	22	4	15.38
SHISA2	0	genome.wustl.edu	37	13	26620919	26620919	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	13	26620919	26620919	C	G	SNP	SHISA2	ENST00000319420	human	ensembl	74_37	-1	known	missense	c.620	p.C207S	1.000	NULL	NULL	-	no_errors	SHISA2	HGNC	ENSG00000180730	tier1	-	-	31	0	0.00	56	53	48.18
ACSM5	0	genome.wustl.edu	37	16	20442562	20442562	+	Silent	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	16	20442562	20442562	C	T	SNP	ACSM5	ENST00000331849	human	ensembl	74_37	+1	known	silent	c.1227	p.N409	0.043	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSM5	HGNC	ENSG00000183549	tier1	rs78006992	-	29	0	0.00	80	8	9.09
MIR137HG	0	genome.wustl.edu	37	1	98511733	98511733	+	RNA	SNP	G	G	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	98511733	98511733	G	A	SNP	MIR137HG	ENST00000424528	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR137HG	HGNC	ENSG00000225206	tier1	rs75853046	-	33	0	0.00	106	21	16.15
SPTA1	0	genome.wustl.edu	37	1	158636128	158636128	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	158636128	158636128	T	A	SNP	SPTA1	ENST00000368147	human	ensembl	74_37	-1	known	missense	c.2198	p.E733V	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_hand_dom,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	tier1	-	-	54	0	0.00	104	37	26.24
CDK11A	0	genome.wustl.edu	37	1	1647893	1647894	+	In_Frame_Ins	INS	-	-	TTTCTT			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	1647893	1647894	-	TTTCTT	INS	CDK11A	ENST00000404249	human	ensembl	74_37	-1	known	in_frame_ins	c.380_379	p.127in_frame_insKE	0.142:0.971	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK11A	HGNC	ENSG00000008128	tier1			NA	NA	NA	NA	NA	NA
C1orf173	0	genome.wustl.edu	37	1	75072348	75072348	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	75072348	75072348	T	C	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.1426	p.T476A	0.131	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	tier1	-	-	28	0	0.00	48	18	27.27
PRAMEF22	0	genome.wustl.edu	37	1	13038327	13038327	+	Silent	SNP	G	G	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	13038327	13038327	G	T	SNP	PRAMEF22	ENST00000376187	human	ensembl	74_37	+1	known	silent	c.1392	p.T464	0.000	NULL	NULL	-	no_errors	PRAMEF22	HGNC	ENSG00000204508	tier1	rs199598633	-	8	0	0.00	7	5	41.67
CCDC138	0	genome.wustl.edu	37	2	109408168	109408168	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	2	109408168	109408168	A	G	SNP	CCDC138	ENST00000295124	human	ensembl	74_37	+1	known	missense	c.304	p.K102E	0.627	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006	tier1	-	-	68	0	0.00	25	28	52.83
TRIOBP	0	genome.wustl.edu	37	22	38121164	38121164	+	Silent	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	22	38121164	38121164	C	T	SNP	TRIOBP	ENST00000406386	human	ensembl	74_37	+1	known	silent	c.2601	p.S867	0.003	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	TRIOBP	HGNC	ENSG00000100106	tier1	-	-	22	0	0.00	32	29	47.54
MED23	0	genome.wustl.edu	37	6	131941854	131941857	+	Frame_Shift_Del	DEL	AGAT	AGAT	-			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	AGAT	AGAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	6	131941854	131941857	AGAT	-	DEL	MED23	ENST00000368058	human	ensembl	74_37	-1	known	frame_shift_del	c.511_508	p.I170fs	0.970:0.963:1.000:1.000	pfam_Mediator_Med23	pfam_Mediator_Med23	-	no_errors	MED23	HGNC	ENSG00000112282	tier1			24	0	0.00	47	22	31.88
DCHS2	0	genome.wustl.edu	37	4	155254432	155254432	+	Silent	SNP	G	G	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	4	155254432	155254432	G	A	SNP	DCHS2	ENST00000357232	human	ensembl	74_37	-1	known	silent	c.1431	p.H477	0.560	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_HTH_CenpB_DNA-bd_dom,superfamily_Cadherin-like,superfamily_Homeodomain-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	DCHS2	HGNC	ENSG00000197410	tier1	-	-	21	0	0.00	23	6	20.69
GIMAP1	0	genome.wustl.edu	37	7	150417384	150417384	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	7	150417384	150417384	T	A	SNP	GIMAP1	ENST00000307194	human	ensembl	74_37	+1	known	missense	c.292	p.C98S	0.000	pfam_AIG1,superfamily_P-loop_NTPase	pfam_AIG1,superfamily_P-loop_NTPase	-	no_errors	GIMAP1	HGNC	ENSG00000213203	tier1	-	-	30	0	0.00	40	31	43.66
LRRCC1	0	genome.wustl.edu	37	8	86041607	86041607	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	8	86041607	86041607	C	T	SNP	LRRCC1	ENST00000360375	human	ensembl	74_37	+1	known	missense	c.1619	p.A540V	0.033	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin	-	no_errors	LRRCC1	HGNC	ENSG00000133739	tier1	-	-	31	0	0.00	36	21	36.84
CXorf30	0	genome.wustl.edu	37	X	36319258	36319258	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	X	36319258	36319258	C	A	SNP	CXorf30	ENST00000378657	human	ensembl	74_37	+1	known	missense	c.272	p.P91Q	0.259	NULL	NULL	-	no_errors	CXorf30	HGNC	ENSG00000205081	tier1	-	-	80	0	0.00	98	62	38.75
GGA2	0	genome.wustl.edu	37	16	23478708	23478709	+	RNA	INS	-	-	AC			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	16	23478708	23478709	-	AC	INS	GGA2	ENST00000566685	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GGA2	HGNC	ENSG00000103365	tier1			11	0	0.00	12	2	14.29
HLA-DOA	0	genome.wustl.edu	37	6	32976071	32976072	+	RNA	INS	-	-	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	6	32976071	32976072	-	A	INS	HLA-DOA	ENST00000467465	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.004	-	-	-	no_errors	HLA-DOA	HGNC	ENSG00000204252	tier1			8	0	0.00	8	3	27.27
LOC101927648	0	genome.wustl.edu	37	1	143355405	143355405	+	RNA	SNP	T	T	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	143355405	143355405	T	C	SNP	LOC101927648	ENST00000423249	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.006	-	-	-	no_errors	RP11-435B5.4	Clone_based_vega_gene	ENSG00000185044	tier1	-	-	10	0	0.00	4	4	50.00
UNC80	0	genome.wustl.edu	37	2	210791620	210791620	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	2	210791620	210791620	C	G	SNP	UNC80	ENST00000439458	human	ensembl	74_37	+1	known	missense	c.5518	p.Q1840E	1.000	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406	tier1	-	-	21	0	0.00	17	16	48.48
PCDHGB1	0	genome.wustl.edu	37	5	140730100	140730100	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	5	140730100	140730100	G	T	SNP	PCDHGB1	ENST00000523390	human	ensembl	74_37	+1	known	missense	c.273	p.K91N	0.994	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGB1	HGNC	ENSG00000254221	tier1	-	-	29	0	0.00	16	23	58.97
LOC645752	0	genome.wustl.edu	37	15	78211432	78211432	+	RNA	SNP	T	T	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	15	78211432	78211432	T	G	SNP	LOC645752	ENST00000567226	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.401	-	-	-	no_errors	RP11-114H24.2	Clone_based_vega_gene	ENSG00000260776	tier1	-	-	51	0	0.00	47	5	9.62
ALOX5	0	genome.wustl.edu	37	10	45939376	45939376	+	RNA	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	10	45939376	45939376	C	T	SNP	ALOX5	ENST00000498461	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ALOX5	HGNC	ENSG00000012779	tier1	-	-	15	0	0.00	10	19	65.52
SIGLEC6	0	genome.wustl.edu	37	19	52031485	52031485	+	Silent	SNP	A	A	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	19	52031485	52031485	A	G	SNP	SIGLEC6	ENST00000425629	human	ensembl	74_37	-1	known	silent	c.1035	p.G345	0.000	NULL	pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC6	HGNC	ENSG00000105492	tier1	-	-	30	0	0.00	21	12	35.29
MUC19	0	genome.wustl.edu	37	12	40938791	40938791	+	RNA	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	12	40938791	40938791	T	A	SNP	MUC19	ENST00000492952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MUC19	HGNC	ENSG00000205592	tier1	-	-	30	0	0.00	28	8	21.62
NRXN1	0	genome.wustl.edu	37	2	50147836	50147847	+	RNA	DEL	GTGTGTGTGTGT	GTGTGTGTGTGT	-			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	GTGTGTGTGTGT	GTGTGTGTGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	2	50147836	50147847	GTGTGTGTGTGT	-	DEL	NRXN1	ENST00000484192	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001:0.005:0.106:0.113:0.127:0.107:0.109:0.093:0.096:0.025:0.055	-	-	-	no_errors	NRXN1	HGNC	ENSG00000179915	tier1			NA	NA	NA	NA	NA	NA
MVB12B	0	genome.wustl.edu	37	9	129269245	129269245	+	RNA	SNP	G	G	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	9	129269245	129269245	G	A	SNP	MVB12B	ENST00000485886	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MVB12B	HGNC	ENSG00000196814	tier1	-	-	28	0	0.00	49	31	38.27
COL18A1	0	genome.wustl.edu	37	21	46888376	46888376	+	Silent	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	21	46888376	46888376	C	T	SNP	COL18A1	ENST00000359759	human	ensembl	74_37	+1	known	silent	c.1572	p.F524	0.908	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	tier1	-	-	40	0	0.00	46	8	14.81
OR5AK2	0	genome.wustl.edu	37	11	56756816	56756816	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	11	56756816	56756816	G	A	SNP	OR5AK2	ENST00000326855	human	ensembl	74_37	+1	known	missense	c.428	p.R143H	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR5AK2	HGNC	ENSG00000181273	tier1	rs200727671	-	24	0	0.00	21	14	40.00
ANKRD44	0	genome.wustl.edu	37	2	197870436	197870436	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	2	197870436	197870436	G	A	SNP	ANKRD44	ENST00000328737	human	ensembl	74_37	-1	known	missense	c.2254	p.H752Y	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD44	HGNC	ENSG00000065413	tier1	-	-	16	0	0.00	11	5	31.25
TNRC18	0	genome.wustl.edu	37	7	5429990	5429992	+	In_Frame_Del	DEL	AAA	AAA	-			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	AAA	AAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	7	5429990	5429992	AAA	-	DEL	TNRC18	ENST00000399434	human	ensembl	74_37	-1	putative	in_frame_del	c.391_389	p.F130in_frame_del	0.706:0.708:0.711	NULL	NULL	-	no_errors	TNRC18	HGNC	ENSG00000182095	tier1			23	0	0.00	25	6	19.35
SENP3	0	genome.wustl.edu	37	17	7475224	7475224	+	RNA	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	17	7475224	7475224	T	A	SNP	SENP3	ENST00000578868	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.904	-	-	-	no_errors	SENP3	HGNC	ENSG00000161956	tier1	rs71361407	-	9	0	0.00	5	9	64.29
ENSG00000215933	0	genome.wustl.edu	37	X	71372217	71372217	+	RNA	SNP	A	A	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	X	71372217	71372217	A	G	SNP	ENSG00000215933	ENST00000401114	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.006	-	-	-	no_errors	BX119917.1	Clone_based_ensembl_gene	ENSG00000215933	tier1	-	-	50	0	0.00	50	10	16.67
CHD2	0	genome.wustl.edu	37	15	93518154	93518154	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	15	93518154	93518154	G	T	SNP	CHD2	ENST00000557381	human	ensembl	74_37	+1	putative	missense	c.2551	p.D851Y	1.000	pfam_Helicase_C,superfamily_P-loop_NTPase,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD2	HGNC	ENSG00000173575	tier1	-	-	43	0	0.00	42	4	8.70
FBXW7	0	genome.wustl.edu	37	4	153271229	153271229	+	Silent	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	4	153271229	153271229	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	74_37	-1	known	silent	c.549	p.L183	1.000	NULL	pfam_WD40_repeat,pfam_F-box_dom,superfamily_WD40_repeat_dom,superfamily_F-box_dom,smart_F-box_dom,smart_WD40_repeat,pfscan_F-box_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW7	HGNC	ENSG00000109670	tier1	-	-	48	0	0.00	65	23	26.14
TEKT5	0	genome.wustl.edu	37	16	10729636	10729636	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	16	10729636	10729636	T	A	SNP	TEKT5	ENST00000283025	human	ensembl	74_37	-1	known	missense	c.1226	p.D409V	1.000	pfam_Tektin,prints_Tektin	pfam_Tektin,prints_Tektin	-	no_errors	TEKT5	HGNC	ENSG00000153060	tier1	-	-	17	0	0.00	34	12	26.09
CCL11	0	genome.wustl.edu	37	17	32612893	32612893	+	Silent	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	17	32612893	32612893	C	T	SNP	CCL11	ENST00000305869	human	ensembl	74_37	+1	known	silent	c.66	p.L22	0.007	superfamily_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	-	no_errors	CCL11	HGNC	ENSG00000172156	tier1	rs202189623	-	15	0	0.00	19	12	38.71
SKIDA1	0	genome.wustl.edu	37	10	21805483	21805483	+	Silent	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	10	21805483	21805483	C	T	SNP	SKIDA1	ENST00000449193	human	ensembl	74_37	-1	known	silent	c.1269	p.E423	0.410	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592	tier1	-	-	33	0	0.00	34	4	10.53
CARD10	0	genome.wustl.edu	37	22	37906309	37906314	+	In_Frame_Del	DEL	CTCCTT	CTCCTT	-			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	CTCCTT	CTCCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	22	37906309	37906314	CTCCTT	-	DEL	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	in_frame_del	c.819_814	p.KE272in_frame_del	0.939:0.949:0.957:0.963:0.966:0.967	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	tier1			NA	NA	NA	NA	NA	NA
DIS3L	0	genome.wustl.edu	37	15	66625180	66625180	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	15	66625180	66625180	C	A	SNP	DIS3L	ENST00000319212	human	ensembl	74_37	+1	known	missense	c.2788	p.Q930K	0.269	NULL	NULL	-	no_errors	DIS3L	HGNC	ENSG00000166938	tier1	-	-	33	0	0.00	42	4	8.70
ITGB7	0	genome.wustl.edu	37	12	53589964	53589964	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	12	53589964	53589964	T	A	SNP	ITGB7	ENST00000267082	human	ensembl	74_37	-1	known	missense	c.836	p.N279I	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt_dom,pfam_EGF_extracell,superfamily_Plexin-like_fold,superfamily_Integrin_bsu_tail,smart_Plexin-like_fold,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB7	HGNC	ENSG00000139626	tier1	-	-	27	0	0.00	59	9	13.24
MEGF8	0	genome.wustl.edu	37	19	42848647	42848647	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	19	42848647	42848647	T	A	SNP	MEGF8	ENST00000251268	human	ensembl	74_37	+1	known	missense	c.1843	p.C615S	1.000	NULL	pfam_CUB_dom,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB_dom,superfamily_Plexin-like_fold,smart_CUB_dom,smart_EG-like_dom,smart_Plexin-like_fold,smart_EGF-like_Ca-bd_dom,smart_EGF_laminin,pfscan_CUB_dom,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	tier1	-	-	14	0	0.00	10	9	47.37
ENSG00000267865	0	genome.wustl.edu	37	19	56220430	56220431	+	RNA	INS	-	-	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	19	56220430	56220431	-	T	INS	ENSG00000267865	ENST00000596293	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	CTD-2611O12.8	Clone_based_vega_gene	ENSG00000267865	tier1			10	0	0.00	15	6	28.57
C21orf49	0	genome.wustl.edu	37	21	34157085	34157086	+	Splice_Site	INS	-	-	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	21	34157085	34157086	-	T	INS	C21orf49	ENST00000454365	human	ensembl	74_37	+1	known	splice_site_ins	c.1-1_0	e1-1	0.122:0.122	-	-	-	no_errors	C21orf49	HGNC	ENSG00000205930	tier1			16	0	0.00	20	4	16.67
LOC101930657	0	genome.wustl.edu	37	1	745347	745347	+	RNA	SNP	T	T	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	745347	745347	T	C	SNP	LOC101930657	ENST00000412115	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-206L10.9	Clone_based_vega_gene	ENSG00000237491	tier1	-	-	15	0	0.00	26	7	21.21
PTPLA	0	genome.wustl.edu	37	10	17646048	17646049	+	Splice_Site	INS	-	-	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	10	17646048	17646049	-	A	INS	PTPLA	ENST00000361271	human	ensembl	74_37	-1	known	splice_site_ins	c.258-3_258-2	e2-2	1.000:0.005	-	-	-	no_errors	PTPLA	HGNC	ENSG00000165996	tier1			22	0	0.00	22	4	15.38
CNTNAP2	0	genome.wustl.edu	37	7	148117974	148117974	+	RNA	SNP	A	A	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	7	148117974	148117974	A	T	SNP	CNTNAP2	ENST00000463592	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CNTNAP2	HGNC	ENSG00000174469	tier1	-	-	53	0	0.00	65	29	30.85
TRPM1	0	genome.wustl.edu	37	15	31327838	31327838	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	15	31327838	31327838	T	G	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.2662	p.I888L	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	tier1	-	-	38	0	0.00	28	5	15.15
MDGA2	0	genome.wustl.edu	37	14	47426764	47426764	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	14	47426764	47426764	T	A	SNP	MDGA2	ENST00000439988	human	ensembl	74_37	-1	known	missense	c.1902	p.R634S	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_MAM_dom,pfscan_Ig-like_dom	-	no_errors	MDGA2	Uniprot_gn	ENSG00000272781	tier1	-	-	30	0	0.00	17	27	61.36
PCLO	0	genome.wustl.edu	37	7	82544871	82544871	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	7	82544871	82544871	C	A	SNP	PCLO	ENST00000333891	human	ensembl	74_37	-1	known	missense	c.12431	p.G4144V	1.000	NULL	pfam_Znf_piccolo,pfam_C2_dom,pfam_PDZ,superfamily_C2_dom,superfamily_PDZ,superfamily_Znf_FYVE_PHD,smart_PDZ,smart_C2_dom,pfscan_C2_dom,pfscan_PDZ	-	no_errors	PCLO	HGNC	ENSG00000186472	tier1	-	-	32	0	0.00	48	19	28.36
GRHL2	0	genome.wustl.edu	37	8	102661670	102661670	+	Silent	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	8	102661670	102661670	C	T	SNP	GRHL2	ENST00000251808	human	ensembl	74_37	+1	known	silent	c.1641	p.D547	0.994	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	tier1	-	-	30	0	0.00	57	11	16.18
HTT	0	genome.wustl.edu	37	4	3214355	3214355	+	Silent	SNP	G	G	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	4	3214355	3214355	G	T	SNP	HTT	ENST00000355072	human	ensembl	74_37	+1	known	silent	c.6693	p.V2231	0.000	pfam_Huntingtin_middle-repeat	pfam_Huntingtin_middle-repeat,pfam_HEAT,superfamily_ARM-type_fold,prints_Huntingtin	-	no_errors	HTT	HGNC	ENSG00000197386	tier1	-	-	50	0	0.00	95	14	12.84
UBQLN2	0	genome.wustl.edu	37	X	56592114	56592114	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	X	56592114	56592114	C	G	SNP	UBQLN2	ENST00000338222	human	ensembl	74_37	+1	known	missense	c.1808	p.A603G	1.000	pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_Ubiquitin_dom,pfam_Rad60/SUMO_like,pfam_UBA/Ts_N,superfamily_UBA-like,superfamily_ARM-type_fold,superfamily_XPC-bd,smart_Ubiquitin_dom,smart_STI1_HS-bd,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Ubiquitin_supergroup	-	no_errors	UBQLN2	HGNC	ENSG00000188021	tier1	-	-	30	0	0.00	35	6	14.63
ACER1	0	genome.wustl.edu	37	19	6307291	6307291	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	19	6307291	6307291	T	A	SNP	ACER1	ENST00000301452	human	ensembl	74_37	-1	known	nonsense	c.499	p.K167*	0.000	pfam_Ceramidase	pfam_Ceramidase	-	no_errors	ACER1	HGNC	ENSG00000167769	tier1	-	-	32	0	0.00	51	12	18.75
OBSCN	0	genome.wustl.edu	37	1	228520959	228520959	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	228520959	228520959	A	G	SNP	OBSCN	ENST00000422127	human	ensembl	74_37	+1	known	missense	c.15791	p.E5264G	1.000	pfam_Ig_I-set,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	OBSCN	HGNC	ENSG00000154358	tier1	-	-	43	0	0.00	47	12	20.34
MUC4	0	genome.wustl.edu	37	3	195506603	195506603	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	3	195506603	195506603	T	C	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.11848	p.T3950A	0.718	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	rs201602653	-	43	0	0.00	60	23	27.38
RB1	0	genome.wustl.edu	37	13	49039503	49039511	+	Frame_Shift_Del	DEL	AGGTGTGTG	AGGTGTGTG	-			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	AGGTGTGTG	AGGTGTGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	13	49039503	49039511	AGGTGTGTG	-	DEL	RB1	ENST00000267163	human	ensembl	74_37	+1	known	frame_shift_del	c.2488_2489	p.R830fs	1.000:1.000	pfam_RB_C	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1			NA	NA	NA	NA	NA	NA
ENSG00000259521	0	genome.wustl.edu	37	15	41319993	41319994	+	RNA	INS	-	-	A			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	15	41319993	41319994	-	A	INS	ENSG00000259521	ENST00000560178	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	RP11-540O11.4	Clone_based_vega_gene	ENSG00000259521	tier1			23	0	0.00	18	3	14.29
MYOCD	0	genome.wustl.edu	37	17	12661459	12661459	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	17	12661459	12661459	A	C	SNP	MYOCD	ENST00000425538	human	ensembl	74_37	+1	known	missense	c.2260	p.T754P	0.912	NULL	pfam_RPEL_repeat,pfam_SAP_dom,smart_RPEL_repeat,smart_SAP_dom,pfscan_RPEL_repeat,pfscan_SAP_dom	-	no_errors	MYOCD	HGNC	ENSG00000141052	tier1	-	-	41	0	0.00	118	11	8.53
BLOC1S3	0	genome.wustl.edu	37	19	45684547	45684547	+	RNA	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	19	45684547	45684547	C	T	SNP	BLOC1S3	ENST00000588362	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	BLOC1S3	HGNC	ENSG00000189114	tier1	-	-	27	0	0.00	32	9	21.95
DTL	0	genome.wustl.edu	37	1	212274107	212274107	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	212274107	212274107	C	T	SNP	DTL	ENST00000366991	human	ensembl	74_37	+1	known	missense	c.1775	p.A592V	0.038	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DTL	HGNC	ENSG00000143476	tier1	-	-	30	0	0.00	17	15	46.88
NCAM2	0	genome.wustl.edu	37	21	22910184	22910184	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	21	22910184	22910184	A	T	SNP	NCAM2	ENST00000400546	human	ensembl	74_37	+1	known	missense	c.2420	p.E807V	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom,prints_Neural_cell_adh	-	no_errors	NCAM2	HGNC	ENSG00000154654	tier1	-	-	36	0	0.00	23	11	32.35
NELL1	0	genome.wustl.edu	37	11	21305901	21305901	+	RNA	SNP	A	A	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	11	21305901	21305901	A	T	SNP	NELL1	ENST00000529218	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	NELL1	HGNC	ENSG00000165973	tier1	-	-	37	0	0.00	54	20	27.03
GJA9	0	genome.wustl.edu	37	1	39340985	39340985	+	Silent	SNP	T	T	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	1	39340985	39340985	T	C	SNP	GJA9	ENST00000357771	human	ensembl	74_37	-1	known	silent	c.786	p.Q262	0.991	NULL	pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin	-	no_errors	GJA9	HGNC	ENSG00000131233	tier1	-	-	29	0	0.00	53	11	17.19
RBM10	0	genome.wustl.edu	37	X	47039357	47039357	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	X	47039357	47039357	C	T	SNP	RBM10	ENST00000377604	human	ensembl	74_37	+1	known	missense	c.980	p.S327F	0.997	smart_RRM_dom,pfscan_RRM_dom	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM10	HGNC	ENSG00000182872	tier1	-	-	55	0	0.00	82	9	9.89
GOLGA2P5	0	genome.wustl.edu	37	12	100562921	100562921	+	RNA	DEL	T	T	-			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	12	100562921	100562921	T	-	DEL	GOLGA2P5	ENST00000421840	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GOLGA2B	Clone_based_vega_gene	ENSG00000238105	tier1			14	0	0.00	13	3	18.75
ZNF733P	0	genome.wustl.edu	37	7	62752482	62752482	+	RNA	SNP	T	T	C			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	7	62752482	62752482	T	C	SNP	ZNF733P	ENST00000331425	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.086	-	-	-	no_errors	ZNF733P	HGNC	ENSG00000185037	tier1	-	-	48	0	0.00	87	14	13.86
TNRC6A	0	genome.wustl.edu	37	16	24802323	24802330	+	Frame_Shift_Del	DEL	AACCTGCT	AACCTGCT	-			TCGA-DX-A8BS-01A-11D-A37C-09	TCGA-DX-A8BS-11A-13D-A37F-09	AACCTGCT	AACCTGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	d3757dd0-b728-4ef8-b4db-cda45a664070	843ebeaf-a333-4f5b-9c34-1629672f36e5	16	24802323	24802330	AACCTGCT	-	DEL	TNRC6A	ENST00000395799	human	ensembl	74_37	+1	known	frame_shift_del	c.2360_2367	p.K787fs	1.000:0.992:1.000:0.999:0.793:0.172:0.946:0.631	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6A	HGNC	ENSG00000090905	tier1			NA	NA	NA	NA	NA	NA
