Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ZNF257	0	genome.wustl.edu	37	19	22271887	22271887	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	22271887	22271887	C	A	SNP	ZNF257	ENST00000594947	human	ensembl	74_37	+1	known	nonsense	c.1335	p.Y445*	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF257	HGNC	ENSG00000197134	tier1	-	-	43	0	0.00	29	14	32.56
ENSG00000203849	0	genome.wustl.edu	37	1	142713030	142713030	+	RNA	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	142713030	142713030	C	T	SNP	ENSG00000203849	ENST00000369381	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.024	-	-	-	no_errors	RP11-417J8.6	Clone_based_vega_gene	ENSG00000203849	tier1	-	-	69	0	0.00	29	3	9.38
R3HDM2	0	genome.wustl.edu	37	12	57648723	57648723	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	57648723	57648723	G	T	SNP	R3HDM2	ENST00000347140	human	ensembl	74_37	-1	known	missense	c.2764	p.R922S	1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM2	HGNC	ENSG00000179912	tier1	-	-	52	0	0.00	28	4	12.50
ADAMTS20	0	genome.wustl.edu	37	12	43823442	43823442	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	43823442	43823442	C	A	SNP	ADAMTS20	ENST00000389420	human	ensembl	74_37	-1	known	missense	c.3467	p.W1156L	1.000	superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	tier1	-	-	96	0	0.00	73	21	22.34
FAT3	0	genome.wustl.edu	37	11	92533566	92533566	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	92533566	92533566	C	A	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	missense	c.7387	p.P2463T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	tier1	-	-	33	0	0.00	11	6	35.29
PCDHB2	0	genome.wustl.edu	37	5	140474789	140474789	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	140474789	140474789	G	C	SNP	PCDHB2	ENST00000194155	human	ensembl	74_37	+1	known	missense	c.415	p.E139Q	0.003	superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB2	HGNC	ENSG00000112852	tier1	-	-	54	0	0.00	25	14	35.90
MYH14	0	genome.wustl.edu	37	19	50766628	50766628	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	50766628	50766628	C	T	SNP	MYH14	ENST00000262269	human	ensembl	74_37	+1	known	missense	c.2645	p.A882V	0.987	superfamily_P-loop_NTPase	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH14	HGNC	ENSG00000105357	tier1	rs202065396	-	52	0	0.00	40	17	29.82
KRTAP4-5	0	genome.wustl.edu	37	17	39305775	39305776	+	In_Frame_Ins	INS	-	-	GGCAGCAGCTGGGGC			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	17	39305775	39305776	-	GGCAGCAGCTGGGGC	INS	KRTAP4-5	ENST00000343246	human	ensembl	74_37	-1	known	in_frame_ins	c.245_244	p.82in_frame_insRPSCC	0.148:0.743	NULL	NULL	-	no_errors	KRTAP4-5	HGNC	ENSG00000198271	tier1			NA	NA	NA	NA	NA	NA
NKD2	0	genome.wustl.edu	37	5	1038587	1038588	+	Frame_Shift_Ins	INS	-	-	CCCCCAC			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	1038587	1038588	-	CCCCCAC	INS	NKD2	ENST00000382730	human	ensembl	74_37	+1	known	frame_shift_ins	c.373_374	p.P129fs	0.051:0.001	NULL	NULL	-	no_errors	NKD2	HGNC	ENSG00000145506	tier1			NA	NA	NA	NA	NA	NA
KIAA2018	0	genome.wustl.edu	37	3	113379809	113379809	+	Silent	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	3	113379809	113379809	G	A	SNP	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	silent	c.720	p.P240	1.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542	tier1	-	-	32	0	0.00	8	4	33.33
SIK2	0	genome.wustl.edu	37	11	111575769	111575769	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	111575769	111575769	G	A	SNP	SIK2	ENST00000304987	human	ensembl	74_37	+1	known	missense	c.1007	p.R336H	1.000	pirsf_Ser/Thr_kinase_SIK1/2	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kinase_SIK1/2,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	SIK2	HGNC	ENSG00000170145	tier1	-	-	40	0	0.00	15	3	16.67
OR11H4	0	genome.wustl.edu	37	14	20711361	20711361	+	Silent	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	20711361	20711361	C	T	SNP	OR11H4	ENST00000315409	human	ensembl	74_37	+1	known	silent	c.411	p.C137	0.275	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR11H4	HGNC	ENSG00000176198	tier1	-	-	38	0	0.00	9	3	25.00
MUC16	0	genome.wustl.edu	37	19	9062319	9062319	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	9062319	9062319	G	T	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.25127	p.P8376H	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	44	0	0.00	37	6	13.95
ITGA10	0	genome.wustl.edu	37	1	145542263	145542263	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	145542263	145542263	G	C	SNP	ITGA10	ENST00000369304	human	ensembl	74_37	+1	known	missense	c.3489	p.E1163D	1.000	NULL	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	tier1	-	-	45	0	0.00	47	5	9.62
ARHGAP9	0	genome.wustl.edu	37	12	57872884	57872884	+	Silent	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	57872884	57872884	G	T	SNP	ARHGAP9	ENST00000356411	human	ensembl	74_37	-1	known	silent	c.306	p.L102	0.813	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_WW_dom,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_WW_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP9	HGNC	ENSG00000123329	tier1	-	-	38	0	0.00	22	4	15.38
CXADRP3	0	genome.wustl.edu	37	18	14478196	14478196	+	RNA	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	18	14478196	14478196	C	T	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766	tier1	-	-	50	0	0.00	21	41	66.13
RAPGEF2	0	genome.wustl.edu	37	4	160251516	160251516	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	4	160251516	160251516	G	T	SNP	RAPGEF2	ENST00000264431	human	ensembl	74_37	+1	known	missense	c.850	p.V284L	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,pfam_PDZ,pfam_cNMP-bd_dom,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF2	HGNC	ENSG00000109756	tier1	-	-	37	0	0.00	12	3	20.00
STARD3	0	genome.wustl.edu	37	17	37818563	37818563	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	17	37818563	37818563	G	T	SNP	STARD3	ENST00000336308	human	ensembl	74_37	+1	known	missense	c.1199	p.C400F	1.000	pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom	pfam_MENTAL,pfam_START_lipid-bd_dom,smart_START_lipid-bd_dom,pfscan_START_lipid-bd_dom,prints_StAR	-	no_errors	STARD3	HGNC	ENSG00000131748	tier1	-	-	60	0	0.00	40	4	9.09
MYOM2	0	genome.wustl.edu	37	8	2037929	2037929	+	Silent	SNP	T	T	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	8	2037929	2037929	T	C	SNP	MYOM2	ENST00000262113	human	ensembl	74_37	+1	known	silent	c.1743	p.Y581	0.551	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	MYOM2	HGNC	ENSG00000036448	tier1	-	-	58	0	0.00	10	14	58.33
PRR22	0	genome.wustl.edu	37	19	5783472	5783472	+	Silent	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	5783472	5783472	G	A	SNP	PRR22	ENST00000419421	human	ensembl	74_37	-1	known	silent	c.786	p.A262	0.000	NULL	NULL	-	no_errors	PRR22	HGNC	ENSG00000212123	tier1	-	-	25	0	0.00	14	7	33.33
EPHB4	0	genome.wustl.edu	37	7	100410739	100410739	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	7	100410739	100410739	C	A	SNP	EPHB4	ENST00000358173	human	ensembl	74_37	-1	known	missense	c.1848	p.K616N	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHB4	HGNC	ENSG00000196411	tier1	-	-	28	0	0.00	40	4	8.89
PEPD	0	genome.wustl.edu	37	19	33877912	33877913	+	RNA	INS	-	-	AAAGT			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	33877912	33877913	-	AAAGT	INS	PEPD	ENST00000589598	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.016:0.087	-	-	-	no_errors	PEPD	HGNC	ENSG00000124299	tier1			NA	NA	NA	NA	NA	NA
ALX4	0	genome.wustl.edu	37	11	44289129	44289129	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	44289129	44289129	C	T	SNP	ALX4	ENST00000329255	human	ensembl	74_37	-1	known	missense	c.821	p.R274H	1.000	superfamily_Homeodomain-like,smart_Homeobox_dom	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom	-	no_errors	ALX4	HGNC	ENSG00000052850	tier1	-	-	60	0	0.00	9	59	86.76
TUBAL3	0	genome.wustl.edu	37	10	5435603	5435603	+	Silent	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	10	5435603	5435603	G	A	SNP	TUBAL3	ENST00000380419	human	ensembl	74_37	-1	known	silent	c.1218	p.Y406	0.975	superfamily_Tub_FtsZ_C,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBAL3	HGNC	ENSG00000178462	tier1	-	-	34	0	0.00	16	5	23.81
ENSG00000224516	0	genome.wustl.edu	37	2	233244409	233244409	+	RNA	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	2	233244409	233244409	C	T	SNP	ENSG00000224516	ENST00000441266	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC068134.8	Clone_based_vega_gene	ENSG00000224516	tier1	-	-	26	0	0.00	2	44	95.65
ZNF419	0	genome.wustl.edu	37	19	58005000	58005000	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	58005000	58005000	A	G	SNP	ZNF419	ENST00000424930	human	ensembl	74_37	+1	known	missense	c.1078	p.I360V	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF419	HGNC	ENSG00000105136	tier1	-	-	122	0	0.00	7	31	81.58
CFTR	0	genome.wustl.edu	37	7	117149156	117149156	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	7	117149156	117149156	T	C	SNP	CFTR	ENST00000003084	human	ensembl	74_37	+1	known	missense	c.233	p.F78S	1.000	superfamily_ABC1_TM_dom,tigrfam_cAMP_cl_channel	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom,prints_CysFib_conduc_TM,tigrfam_cAMP_cl_channel	-	no_errors	CFTR	HGNC	ENSG00000001626	tier1	-	-	69	0	0.00	89	15	14.42
PMS2	0	genome.wustl.edu	37	7	6029584	6029584	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	7	6029584	6029584	A	T	SNP	PMS2	ENST00000265849	human	ensembl	74_37	-1	known	missense	c.991	p.C331S	1.000	pfam_DNA_mismatch_repair_C,superfamily_Ribosomal_S5_D2-typ_fold,tigrfam_DNA_mismatch_repair_N	pfam_MutL_C,pfam_DNA_mismatch_repair_C,pfam_HATPase_ATP-bd,superfamily_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,smart_MutL_C,tigrfam_DNA_mismatch_repair_N	-	no_errors	PMS2	HGNC	ENSG00000122512	tier1	-	-	186	0	0.00	159	25	13.59
GPR37L1	0	genome.wustl.edu	37	1	202097525	202097527	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	202097525	202097527	CTG	-	DEL	GPR37L1	ENST00000367282	human	ensembl	74_37	+1	known	in_frame_del	c.1287_1289	p.C433in_frame_del	0.998:0.998:0.996	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPR37_orph,prints_GPCR_Rhodpsn	-	no_errors	GPR37L1	HGNC	ENSG00000170075	tier1			31	0	0.00	18	3	14.29
LRRC41	0	genome.wustl.edu	37	1	46763171	46763171	+	RNA	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	46763171	46763171	G	T	SNP	LRRC41	ENST00000469150	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.038	-	-	-	no_errors	LRRC41	HGNC	ENSG00000132128	tier1	-	-	38	0	0.00	12	3	20.00
ARHGAP22	0	genome.wustl.edu	37	10	49654494	49654494	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	10	49654494	49654494	C	G	SNP	ARHGAP22	ENST00000417912	human	ensembl	74_37	-1	known	missense	c.2085	p.E695D	0.997	NULL	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP22	HGNC	ENSG00000128805	tier1	-	-	70	0	0.00	19	7	26.92
DLK1	0	genome.wustl.edu	37	14	101200664	101200664	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	101200664	101200664	C	T	SNP	DLK1	ENST00000341267	human	ensembl	74_37	+1	known	missense	c.583	p.R195W	0.986	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_EGF_extracell,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	DLK1	HGNC	ENSG00000185559	tier1	-	-	36	0	0.00	11	17	60.71
YAF2	0	genome.wustl.edu	37	12	42555465	42555465	+	Silent	SNP	T	T	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	42555465	42555465	T	C	SNP	YAF2	ENST00000442791	human	ensembl	74_37	-1	known	silent	c.327	p.E109	1.000	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	YAF2	HGNC	ENSG00000015153	tier1	-	-	79	0	0.00	67	11	14.10
XIST	0	genome.wustl.edu	37	X	73042432	73042432	+	RNA	DEL	T	T	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	X	73042432	73042432	T	-	DEL	XIST	ENST00000429829	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	tier1			27	0	0.00	29	3	9.38
ACACA	0	genome.wustl.edu	37	17	35615186	35615186	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	17	35615186	35615186	C	A	SNP	ACACA	ENST00000353139	human	ensembl	74_37	-1	known	missense	c.1610	p.C537F	1.000	pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_dom,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	tier1	-	-	112	0	0.00	10	55	84.62
FAM181A	0	genome.wustl.edu	37	14	94394800	94394800	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	94394800	94394800	C	T	SNP	FAM181A	ENST00000267594	human	ensembl	74_37	+1	known	missense	c.355	p.R119W	0.733	NULL	NULL	-	no_errors	FAM181A	HGNC	ENSG00000140067	tier1	rs142299390	-	80	0	0.00	30	16	34.78
ZC3H11A	0	genome.wustl.edu	37	1	203809457	203809457	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	203809457	203809457	G	T	SNP	ZC3H11A	ENST00000332127	human	ensembl	74_37	+1	known	nonsense	c.997	p.E333*	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H11A	HGNC	ENSG00000058673	tier1	-	-	48	0	0.00	23	4	14.81
OR10G2	0	genome.wustl.edu	37	14	22102287	22102287	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	22102287	22102287	C	A	SNP	OR10G2	ENST00000542433	human	ensembl	74_37	-1	known	missense	c.712	p.G238W	0.997	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR10G2	HGNC	ENSG00000255582	tier1	-	-	62	0	0.00	44	10	18.52
C19orf40	0	genome.wustl.edu	37	19	33464449	33464449	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	33464449	33464449	G	A	SNP	C19orf40	ENST00000588258	human	ensembl	74_37	+1	known	missense	c.224	p.R75K	1.000	NULL	superfamily_RuvA_2-like	-	no_errors	C19orf40	HGNC	ENSG00000131944	tier1	-	-	22	0	0.00	21	8	27.59
FAM230C	0	genome.wustl.edu	37	22	21663350	21663350	+	RNA	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	22	21663350	21663350	G	A	SNP	FAM230C	ENST00000436681	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.255	-	-	-	no_errors	KB-1183D5.13	Clone_based_vega_gene	ENSG00000206142	tier1	-	-	29	0	0.00	30	5	14.29
SFTA3	0	genome.wustl.edu	37	14	36982394	36982394	+	RNA	SNP	G	G	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	36982394	36982394	G	C	SNP	SFTA3	ENST00000518987	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.173	-	-	-	no_errors	SFTA3	HGNC	ENSG00000229415	tier1	-	-	52	0	0.00	23	5	17.86
CASR	0	genome.wustl.edu	37	3	122002947	122002947	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	3	122002947	122002947	C	T	SNP	CASR	ENST00000498619	human	ensembl	74_37	+1	known	missense	c.2176	p.R726C	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,superfamily_Growth_fac_rcpt_N_dom,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	tier1	-	-	17	0	0.00	12	5	29.41
ATRX	0	genome.wustl.edu	37	X	76939398	76939419	+	Frame_Shift_Del	DEL	ACAAGGTTTTTCTCCTTTTCGT	ACAAGGTTTTTCTCCTTTTCGT	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	ACAAGGTTTTTCTCCTTTTCGT	ACAAGGTTTTTCTCCTTTTCGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	X	76939398	76939419	ACAAGGTTTTTCTCCTTTTCGT	-	DEL	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	frame_shift_del	c.1350_1329	p.R444fs	0.000:0.000:0.000:0.000:0.000:0.005:0.711:0.853:0.965:0.963:0.984:0.989:0.985:0.987:1.000:0.999:0.997:0.900:0.041:0.004:0.000:0.001	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1			NA	NA	NA	NA	NA	NA
TTC34	0	genome.wustl.edu	37	1	2576903	2576903	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	2576903	2576903	G	C	SNP	TTC34	ENST00000401095	human	ensembl	74_37	-1	known	missense	c.787	p.Q263E	0.327	NULL	smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC34	HGNC	ENSG00000215912	tier1	-	-	27	0	0.00	15	4	21.05
TP53	0	genome.wustl.edu	37	17	7578431	7578431	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	17	7578431	7578431	G	A	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	nonsense	c.499	p.Q167*	0.998	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	31	0	0.00	1	9	90.00
SLIT3	0	genome.wustl.edu	37	5	168149295	168149295	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	168149295	168149295	G	T	SNP	SLIT3	ENST00000519560	human	ensembl	74_37	-1	known	missense	c.2449	p.H817N	0.997	smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Leu-rich_rpt_typical-subtyp	pfam_EG-like_dom,pfam_Leu-rich_rpt,pfam_Laminin_G,pfam_LRR-contain_N,pfam_Cys-rich_flank_reg_C,superfamily_ConA-like_lec_gl_sf,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Leu-rich_rpt_RNase_inh_sub-typ,smart_Cys-rich_flank_reg_C,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_Laminin_G,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	SLIT3	HGNC	ENSG00000184347	tier1	-	-	65	0	0.00	27	6	18.18
ZBTB18	0	genome.wustl.edu	37	1	244217791	244217791	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	244217791	244217791	G	T	SNP	ZBTB18	ENST00000358704	human	ensembl	74_37	+1	known	missense	c.715	p.V239L	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB18	HGNC	ENSG00000179456	tier1	-	-	19	0	0.00	4	11	73.33
LRBA	0	genome.wustl.edu	37	4	151392869	151392869	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	4	151392869	151392869	G	A	SNP	LRBA	ENST00000357115	human	ensembl	74_37	-1	known	missense	c.6607	p.R2203C	0.998	superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl_sf,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom	-	no_errors	LRBA	HGNC	ENSG00000198589	tier1	rs200164280	-	58	0	0.00	5	26	83.87
NPAP1	0	genome.wustl.edu	37	15	24921350	24921350	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	15	24921350	24921350	T	A	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.336	p.S112R	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823	tier1	-	-	52	0	0.00	36	5	12.20
TLE3	0	genome.wustl.edu	37	15	70347560	70347560	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	15	70347560	70347560	C	T	SNP	TLE3	ENST00000558939	human	ensembl	74_37	-1	known	missense	c.1415	p.G472D	1.000	superfamily_WD40_repeat_dom	pfam_Groucho/TLE_N,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Groucho_enhance	-	no_errors	TLE3	HGNC	ENSG00000140332	tier1	-	-	33	0	0.00	38	4	9.52
SULT1A1	0	genome.wustl.edu	37	16	28618098	28618098	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	16	28618098	28618098	T	C	SNP	SULT1A1	ENST00000314752	human	ensembl	74_37	-1	known	missense	c.578	p.Y193C	0.999	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	SULT1A1	HGNC	ENSG00000196502	tier1	-	-	36	0	0.00	21	26	55.32
RALGAPA2	0	genome.wustl.edu	37	20	20620468	20620468	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	20	20620468	20620468	G	T	SNP	RALGAPA2	ENST00000202677	human	ensembl	74_37	-1	known	nonsense	c.627	p.C209*	1.000	NULL	pfam_Rap_GAP_dom,superfamily_ARM-type_fold,pfscan_Rap_GAP_dom	-	no_errors	RALGAPA2	HGNC	ENSG00000188559	tier1	-	-	111	0	0.00	54	42	43.75
SLAMF1	0	genome.wustl.edu	37	1	160604456	160604456	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	160604456	160604456	C	A	SNP	SLAMF1	ENST00000302035	human	ensembl	74_37	-1	known	missense	c.647	p.S216I	0.998	pfscan_Ig-like_dom	pfam_Sig_lymph_act_molc_N,pfscan_Ig-like_dom	-	no_errors	SLAMF1	HGNC	ENSG00000117090	tier1	-	-	34	0	0.00	28	11	28.21
EIF4G3	0	genome.wustl.edu	37	1	21276516	21276516	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	21276516	21276516	G	A	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	missense	c.653	p.A218V	1.000	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	tier1	-	-	27	0	0.00	10	3	23.08
PAXBP1	0	genome.wustl.edu	37	21	34109575	34109575	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	21	34109575	34109575	T	A	SNP	PAXBP1	ENST00000331923	human	ensembl	74_37	-1	known	nonsense	c.2626	p.R876*	1.000	NULL	pfam_GCFC_dom	-	no_errors	PAXBP1	HGNC	ENSG00000159086	tier1	-	-	162	0	0.00	92	11	10.68
IL10RA	0	genome.wustl.edu	37	11	117864852	117864852	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	117864852	117864852	C	A	SNP	IL10RA	ENST00000227752	human	ensembl	74_37	+1	known	missense	c.676	p.L226I	0.000	superfamily_Fibronectin_type3	superfamily_Fibronectin_type3	-	no_errors	IL10RA	HGNC	ENSG00000110324	tier1	-	-	46	0	0.00	36	4	10.00
FBP2	0	genome.wustl.edu	37	9	97321346	97321346	+	Silent	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	9	97321346	97321346	C	T	SNP	FBP2	ENST00000375337	human	ensembl	74_37	-1	known	silent	c.894	p.T298	0.993	pfam_FBPase_class-1/SBPase	pfam_FBPase_class-1/SBPase,pfam_Inositol_monophosphatase,prints_FBPtase,prints_SBPase	-	no_errors	FBP2	HGNC	ENSG00000130957	tier1	-	-	20	0	0.00	21	13	38.24
MT-TY	0	genome.wustl.edu	37	MT	5877	5877	+	RNA	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	MT	5877	5877	C	A	SNP	MT-TY	ENST00000387409	human	ensembl	74_37	-1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	MT-TY	HGNC	ENSG00000210144	tier1	-	-	85	0	0.00	20	2	9.09
YTHDC2	0	genome.wustl.edu	37	5	112920136	112920136	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	112920136	112920136	C	A	SNP	YTHDC2	ENST00000161863	human	ensembl	74_37	+1	known	missense	c.3785	p.P1262Q	1.000	NULL	pfam_YTH_domain,pfam_Helicase-assoc_dom,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_DUF1605,pfam_R3H_ss-bd,superfamily_P-loop_NTPase,superfamily_Ankyrin_rpt-contain_dom,smart_R3H_ss-bd,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Helicase-assoc_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_R3H_ss-bd,pfscan_YTH_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	YTHDC2	HGNC	ENSG00000047188	tier1	-	-	105	0	0.00	43	4	8.51
CNOT10	0	genome.wustl.edu	37	3	32805973	32805973	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	3	32805973	32805973	A	G	SNP	CNOT10	ENST00000454516	human	ensembl	74_37	+1	known	missense	c.2047	p.M683V	1.000	NULL	pfam_TPR_1,smart_TPR_repeat	-	no_errors	CNOT10	HGNC	ENSG00000182973	tier1	-	-	118	0	0.00	4	89	95.70
NPHP3-AS1	0	genome.wustl.edu	37	3	132440707	132440707	+	RNA	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	3	132440707	132440707	C	T	SNP	NPHP3-AS1	ENST00000489343	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NPHP3-AS1	HGNC	ENSG00000248724	tier1	-	-	121	0	0.00	43	22	33.85
CPSF4L	0	genome.wustl.edu	37	17	71247236	71247236	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	17	71247236	71247236	G	T	SNP	CPSF4L	ENST00000397671	human	ensembl	74_37	-1	known	missense	c.319	p.P107T	0.001	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	CPSF4L	HGNC	ENSG00000187959	tier1	-	-	27	0	0.00	29	4	12.12
ABCC12	0	genome.wustl.edu	37	16	48145504	48145504	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	16	48145504	48145504	C	A	SNP	ABCC12	ENST00000311303	human	ensembl	74_37	-1	known	missense	c.2194	p.D732Y	0.013	NULL	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCC12	HGNC	ENSG00000140798	tier1	-	-	62	0	0.00	14	13	48.15
LY9	0	genome.wustl.edu	37	1	160784371	160784371	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	160784371	160784371	A	T	SNP	LY9	ENST00000263285	human	ensembl	74_37	+1	known	missense	c.892	p.T298S	0.072	smart_Ig_sub	smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LY9	HGNC	ENSG00000122224	tier1	-	-	55	0	0.00	43	4	8.51
OR8S1	0	genome.wustl.edu	37	12	48920302	48920302	+	Silent	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	48920302	48920302	G	A	SNP	OR8S1	ENST00000310194	human	ensembl	74_37	+1	known	silent	c.888	p.K296	0.600	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR8S1	HGNC	ENSG00000197376	tier1	-	-	60	0	0.00	32	15	31.91
KCNQ5	0	genome.wustl.edu	37	6	73843173	73843173	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	6	73843173	73843173	G	A	SNP	KCNQ5	ENST00000402622	human	ensembl	74_37	+1	known	missense	c.1307	p.R436H	1.000	NULL	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_2pore_dom_K_chnl_dom,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	tier1	-	-	16	0	0.00	14	6	30.00
MYH13	0	genome.wustl.edu	37	17	10225010	10225010	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	17	10225010	10225010	C	A	SNP	MYH13	ENST00000252172	human	ensembl	74_37	-1	known	nonsense	c.2950	p.E984*	1.000	NULL	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH13	HGNC	ENSG00000006788	tier1	-	-	72	0	0.00	43	4	8.51
TSNARE1	0	genome.wustl.edu	37	8	143395764	143395764	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	8	143395764	143395764	G	A	SNP	TSNARE1	ENST00000307180	human	ensembl	74_37	-1	known	missense	c.1112	p.A371V	0.009	superfamily_t-SNARE	pfam_T_SNARE_dom,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	TSNARE1	HGNC	ENSG00000171045	tier1	-	-	63	0	0.00	21	11	34.38
MRGPRX1	0	genome.wustl.edu	37	11	18956293	18956293	+	Silent	SNP	T	T	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	18956293	18956293	T	G	SNP	MRGPRX1	ENST00000302797	human	ensembl	74_37	-1	known	silent	c.39	p.T13	0.001	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	MRGPRX1	HGNC	ENSG00000170255	tier1	-	-	76	0	0.00	67	8	10.67
CENPM	0	genome.wustl.edu	37	22	42335197	42335197	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	22	42335197	42335197	C	T	SNP	CENPM	ENST00000215980	human	ensembl	74_37	-1	known	missense	c.406	p.E136K	0.473	pfam_Centromere_Cenp-M	pfam_Centromere_Cenp-M	-	no_errors	CENPM	HGNC	ENSG00000100162	tier1	-	-	21	0	0.00	6	3	33.33
ZNF544	0	genome.wustl.edu	37	19	58772852	58772852	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	58772852	58772852	G	T	SNP	ZNF544	ENST00000269829	human	ensembl	74_37	+1	known	missense	c.880	p.G294W	0.048	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF544	HGNC	ENSG00000198131	tier1	-	-	52	0	0.00	20	3	13.04
GPR87	0	genome.wustl.edu	37	3	151011993	151011993	+	Silent	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	3	151011993	151011993	C	T	SNP	GPR87	ENST00000260843	human	ensembl	74_37	-1	known	silent	c.1041	p.S347	0.001	NULL	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_P2Y13_rcpt,prints_P2Y14_rcpt	-	no_errors	GPR87	HGNC	ENSG00000138271	tier1	-	-	46	0	0.00	9	28	75.68
PAFAH2	0	genome.wustl.edu	37	1	26303191	26303191	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	26303191	26303191	G	A	SNP	PAFAH2	ENST00000374282	human	ensembl	74_37	-1	known	missense	c.740	p.A247V	0.999	pfam_PAF_acetylhydro,pfam_Peptidase_S9,pirsf_PAF_acetylhydro_eukaryote	pfam_PAF_acetylhydro,pfam_Peptidase_S9,pirsf_PAF_acetylhydro_eukaryote	-	no_errors	PAFAH2	HGNC	ENSG00000158006	tier1	-	-	61	0	0.00	26	4	13.33
ASIC4	0	genome.wustl.edu	37	2	220379808	220379808	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	2	220379808	220379808	A	G	SNP	ASIC4	ENST00000347842	human	ensembl	74_37	+1	known	missense	c.743	p.N248S	1.000	pfam_Na+channel_ASC,prints_Na+channel_ASC	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC4	HGNC	ENSG00000072182	tier1	-	-	26	0	0.00	22	6	21.43
PTPRG	0	genome.wustl.edu	37	3	61975440	61975440	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	3	61975440	61975440	C	T	SNP	PTPRG	ENST00000474889	human	ensembl	74_37	+1	known	missense	c.332	p.S111F	1.000	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Carbonic_anhydrase_a,pfam_Fibronectin_type3,superfamily_Carbonic_anhydrase_a,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Carbonic_anhydrase_a,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRG	HGNC	ENSG00000144724	tier1	-	-	84	0	0.00	45	14	23.73
NPHS1	0	genome.wustl.edu	37	19	36340496	36340496	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	36340496	36340496	G	T	SNP	NPHS1	ENST00000378910	human	ensembl	74_37	-1	known	missense	c.668	p.A223E	0.990	pfam_CD80_C2-set	pfam_CD80_C2-set,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	NPHS1	HGNC	ENSG00000161270	tier1	-	-	17	0	0.00	11	21	65.62
SGCD	0	genome.wustl.edu	37	5	155771523	155771523	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	155771523	155771523	C	A	SNP	SGCD	ENST00000337851	human	ensembl	74_37	+1	known	missense	c.28	p.H10N	1.000	NULL	pfam_Sarcoglycan	-	no_errors	SGCD	HGNC	ENSG00000170624	tier1	-	-	59	0	0.00	19	3	13.64
LOC100652824	0	genome.wustl.edu	37	2	202970606	202970606	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	2	202970606	202970606	G	T	SNP	LOC100652824	ENST00000541917	human	ensembl	74_37	+1	known	missense	c.1447	p.A483S	0.017	NULL	NULL	-	no_errors	AC079354.1	Clone_based_vega_gene	ENSG00000182329	tier1	-	-	48	0	0.00	40	4	9.09
CROCCP3	0	genome.wustl.edu	37	1	16810805	16810822	+	RNA	DEL	GGCCTCGGCGGGGTGAAC	GGCCTCGGCGGGGTGAAC	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	GGCCTCGGCGGGGTGAAC	GGCCTCGGCGGGGTGAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	16810805	16810822	GGCCTCGGCGGGGTGAAC	-	DEL	CROCCP3	ENST00000263511	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.994:0.998:0.998:0.998:0.998:1.000:1.000:1.000:1.000:0.996:0.986:0.999:1.000:0.996:1.000:1.000:1.000:1.000	-	-	-	no_errors	CROCCP3	HGNC	ENSG00000080947	tier1			NA	NA	NA	NA	NA	NA
F11R	0	genome.wustl.edu	37	1	160969677	160969677	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	160969677	160969677	C	A	SNP	F11R	ENST00000368026	human	ensembl	74_37	-1	known	missense	c.683	p.R228L	0.054	smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	F11R	HGNC	ENSG00000158769	tier1	-	-	48	0	0.00	35	4	9.76
RNF4	0	genome.wustl.edu	37	4	2513722	2513722	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	4	2513722	2513722	G	C	SNP	RNF4	ENST00000509258	human	ensembl	74_37	+1	novel	missense	c.244	p.V82L	0.066	NULL	NULL	-	no_errors	RNF4	HGNC	ENSG00000063978	tier1	-	-	36	0	0.00	37	4	9.76
HSPG2	0	genome.wustl.edu	37	1	22206638	22206638	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	22206638	22206638	G	T	SNP	HSPG2	ENST00000374695	human	ensembl	74_37	-1	known	missense	c.2305	p.H769N	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Laminin_G,pfam_Laminin_B_type_IV,pfam_EGF_laminin,pfam_LDrepeatLR_classA_rpt,pfam_EG-like_dom,superfamily_ConA-like_lec_gl_sf,superfamily_LDrepeatLR_classA_rpt,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_EG-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Laminin_B_subgr,smart_EGF_laminin,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_LDrepeatLR_classA_rpt,pfscan_SEA_dom,pfscan_Ig-like_dom,prints_LDrepeatLR_classA_rpt	-	no_errors	HSPG2	HGNC	ENSG00000142798	tier1	-	-	28	0	0.00	5	8	61.54
DFNA5	0	genome.wustl.edu	37	7	24742447	24742447	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	7	24742447	24742447	G	T	SNP	DFNA5	ENST00000342947	human	ensembl	74_37	-1	known	missense	c.1189	p.P397T	1.000	pfam_Gasdermin	pfam_Gasdermin	-	no_errors	DFNA5	HGNC	ENSG00000105928	tier1	-	-	30	0	0.00	37	4	9.76
FSIP1	0	genome.wustl.edu	37	15	39910030	39910030	+	Silent	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	15	39910030	39910030	G	T	SNP	FSIP1	ENST00000350221	human	ensembl	74_37	-1	known	silent	c.1605	p.P535	0.994	NULL	NULL	-	no_errors	FSIP1	HGNC	ENSG00000150667	tier1	-	-	67	0	0.00	26	3	10.34
WDR16	0	genome.wustl.edu	37	17	9541928	9541928	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	17	9541928	9541928	G	A	SNP	WDR16	ENST00000299764	human	ensembl	74_37	+1	known	missense	c.1505	p.R502H	0.999	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR16	HGNC	ENSG00000166596	tier1	-	-	54	0	0.00	12	10	45.45
TM6SF2	0	genome.wustl.edu	37	19	19378468	19378468	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	19378468	19378468	G	T	SNP	TM6SF2	ENST00000389363	human	ensembl	74_37	-1	known	missense	c.766	p.P256T	1.000	pfam_Transmembrane_6/97	pfam_Transmembrane_6/97	-	no_errors	TM6SF2	HGNC	ENSG00000213996	tier1	-	-	33	0	0.00	24	4	14.29
FAM168A	0	genome.wustl.edu	37	11	73122448	73122448	+	Silent	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	73122448	73122448	C	T	SNP	FAM168A	ENST00000064778	human	ensembl	74_37	-1	known	silent	c.438	p.L146	1.000	NULL	NULL	-	no_errors	FAM168A	HGNC	ENSG00000054965	tier1	-	-	29	0	0.00	24	4	14.29
IRAK3	0	genome.wustl.edu	37	12	66603234	66603234	+	Splice_Site	SNP	A	A	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	66603234	66603234	A	T	SNP	IRAK3	ENST00000261233	human	ensembl	74_37	+1	known	splice_site	c.317-2	e3-2	1.000	-	-	-	no_errors	IRAK3	HGNC	ENSG00000090376	tier1	-	-	73	0	0.00	39	4	9.30
ARHGEF11	0	genome.wustl.edu	37	1	156904654	156904654	+	RNA	DEL	A	A	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	156904654	156904654	A	-	DEL	ARHGEF11	ENST00000487682	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.863	-	-	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	tier1			31	0	0.00	28	4	12.50
CSMD3	0	genome.wustl.edu	37	8	113323343	113323343	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	8	113323343	113323343	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.7749	p.Q2583H	1.000	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	58	0	0.00	32	11	25.58
ZNF234	0	genome.wustl.edu	37	19	44661134	44661137	+	Frame_Shift_Del	DEL	GTAA	GTAA	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	GTAA	GTAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	44661134	44661137	GTAA	-	DEL	ZNF234	ENST00000426739	human	ensembl	74_37	+1	known	frame_shift_del	c.965_968	p.K323fs	1.000:0.976:0.987:0.973	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF234	HGNC	ENSG00000263002	tier1			57	0	0.00	33	7	17.50
ART1	0	genome.wustl.edu	37	11	3685362	3685362	+	Silent	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	3685362	3685362	G	T	SNP	ART1	ENST00000250693	human	ensembl	74_37	+1	known	silent	c.927	p.L309	0.613	NULL	pfam_ART,prints_ART	-	no_errors	ART1	HGNC	ENSG00000129744	tier1	-	-	19	0	0.00	13	3	18.75
OR4K1	0	genome.wustl.edu	37	14	20404427	20404427	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	20404427	20404427	C	T	SNP	OR4K1	ENST00000285600	human	ensembl	74_37	+1	known	missense	c.602	p.T201M	0.025	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K1	HGNC	ENSG00000155249	tier1	rs200761942	-	155	0	0.00	108	12	10.00
SRRM4	0	genome.wustl.edu	37	12	119568494	119568494	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	119568494	119568494	G	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.626	p.R209Q	1.000	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767	tier1	rs114691929	GMAF=0.0005	19	0	0.00	13	5	27.78
TFAP2D	0	genome.wustl.edu	37	6	50682937	50682937	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	6	50682937	50682937	A	G	SNP	TFAP2D	ENST00000008391	human	ensembl	74_37	+1	known	missense	c.148	p.T50A	0.999	NULL	pfam_TF_AP2_C,prints_TF_AP2_C	-	no_errors	TFAP2D	HGNC	ENSG00000008197	tier1	-	-	36	0	0.00	29	13	30.95
MUC16	0	genome.wustl.edu	37	19	9033271	9033271	+	Silent	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	9033271	9033271	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.36355	p.L12119	0.000	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	26	0	0.00	15	4	21.05
ARMC5	0	genome.wustl.edu	37	16	31476247	31476247	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	16	31476247	31476247	G	T	SNP	ARMC5	ENST00000457010	human	ensembl	74_37	+1	known	nonsense	c.1903	p.E635*	0.000	NULL	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	ARMC5	HGNC	ENSG00000140691	tier1	-	-	42	0	0.00	19	4	17.39
MAP1B	0	genome.wustl.edu	37	5	71490469	71490469	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	71490469	71490469	G	T	SNP	MAP1B	ENST00000296755	human	ensembl	74_37	+1	known	missense	c.1287	p.K429N	1.000	NULL	pfam_MAP1B_neuraxin	-	no_errors	MAP1B	HGNC	ENSG00000131711	tier1	-	-	66	0	0.00	29	5	14.71
RAD54L	0	genome.wustl.edu	37	1	46743599	46743599	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	46743599	46743599	G	T	SNP	RAD54L	ENST00000371975	human	ensembl	74_37	+1	known	missense	c.1980	p.E660D	0.932	superfamily_P-loop_NTPase	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999	tier1	-	-	27	0	0.00	16	3	15.79
ENSG00000184774	0	genome.wustl.edu	37	1	202794689	202794689	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	202794689	202794689	T	-	DEL	ENSG00000184774	ENST00000330493	human	ensembl	74_37	+1	known	frame_shift_del	c.55	p.F20fs	0.000	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	RP11-480I12.4	Clone_based_vega_gene	ENSG00000184774	tier1			31	0	0.00	18	2	10.00
KIR2DL4	0	genome.wustl.edu	37	19	55324675	55324675	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	55324675	55324675	A	-	DEL	KIR2DL4	ENST00000396284	human	ensembl	74_37	+1	known	frame_shift_del	c.796	p.V269fs	0.003	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL4	HGNC	ENSG00000189013	tier1			54	0	0.00	27	3	10.00
ANKLE2	0	genome.wustl.edu	37	12	133324460	133324460	+	Silent	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	133324460	133324460	G	T	SNP	ANKLE2	ENST00000357997	human	ensembl	74_37	-1	known	silent	c.1188	p.I396	0.026	superfamily_Ankyrin_rpt-contain_dom	pfam_LEM_dom,superfamily_LEM/LEM-like_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ribosomal_L9/RNase_H1_N,pfscan_LEM_dom	-	no_errors	ANKLE2	HGNC	ENSG00000176915	tier1	-	-	63	0	0.00	36	4	10.00
VPS45	0	genome.wustl.edu	37	1	150082514	150082514	+	RNA	DEL	A	A	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	150082514	150082514	A	-	DEL	VPS45	ENST00000484306	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.965	-	-	-	no_errors	VPS45	HGNC	ENSG00000136631	tier1			54	0	0.00	41	6	12.77
TPRXL	0	genome.wustl.edu	37	3	14106367	14106367	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	3	14106367	14106367	T	A	SNP	TPRXL	ENST00000326972	human	ensembl	74_37	+1	known	missense	c.691	p.C231S	0.007	NULL	NULL	-	no_errors	TPRXL	HGNC	ENSG00000180438	tier1	-	-	26	0	0.00	26	4	13.33
MT2A	0	genome.wustl.edu	37	16	56643194	56643194	+	Silent	SNP	T	T	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	16	56643194	56643194	T	C	SNP	MT2A	ENST00000245185	human	ensembl	74_37	+1	known	silent	c.114	p.P38	0.574	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	pfam_Metalthion_sfam_euk,superfamily_Metalthion_dom,prints_Metalthion_vert	-	no_errors	MT2A	HGNC	ENSG00000125148	tier1	-	-	30	0	0.00	7	3	27.27
KDM4C	0	genome.wustl.edu	37	9	7165248	7165248	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	9	7165248	7165248	G	T	SNP	KDM4C	ENST00000381309	human	ensembl	74_37	+1	known	missense	c.2792	p.C931F	1.000	smart_Tudor	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,superfamily_Chorismate_mutase_type_II,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4C	HGNC	ENSG00000107077	tier1	-	-	65	0	0.00	19	3	13.64
GNAL	0	genome.wustl.edu	37	18	11689669	11689670	+	In_Frame_Ins	INS	-	-	GGCCCT			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	18	11689669	11689670	-	GGCCCT	INS	GNAL	ENST00000334049	human	ensembl	74_37	+1	known	in_frame_ins	c.107_108	p.40in_frame_insLA	0.981:0.814	NULL	pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_su,prints_Gprotein_alpha_S	-	no_errors	GNAL	HGNC	ENSG00000141404	tier1			NA	NA	NA	NA	NA	NA
COQ3	0	genome.wustl.edu	37	6	99817499	99817499	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	6	99817499	99817499	C	T	SNP	COQ3	ENST00000254759	human	ensembl	74_37	-1	known	missense	c.1087	p.V363M	0.001	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_Mycolic_cyclopropane_synthase,pfam_UbiE/COQ5_MeTrFase,pfam_Small_mtfrase_dom,pfam_Ribosomal-L11_MeTrfase_PrmA,pfam_SAM-MeTfrase_NodS-related,tigrfam_UbiG_MeTrfase	-	no_errors	COQ3	HGNC	ENSG00000132423	tier1	-	-	17	0	0.00	9	6	40.00
MTA3	0	genome.wustl.edu	37	2	42936306	42936306	+	RNA	DEL	T	T	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	2	42936306	42936306	T	-	DEL	MTA3	ENST00000475383	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	MTA3	HGNC	ENSG00000057935	tier1			59	0	0.00	35	4	10.26
ERN2	0	genome.wustl.edu	37	16	23722303	23722303	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	16	23722303	23722303	A	G	SNP	ERN2	ENST00000256797	human	ensembl	74_37	-1	known	missense	c.274	p.S92P	1.000	superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat	pfam_KEN_dom,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Quinonprotein_ADH-like_supfam,smart_PQQ_beta_propeller_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PUG-dom,pfscan_Prot_kinase_dom	-	no_errors	ERN2	HGNC	ENSG00000134398	tier1	-	-	14	0	0.00	4	6	60.00
CDH9	0	genome.wustl.edu	37	5	26915756	26915756	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	26915756	26915756	G	T	SNP	CDH9	ENST00000231021	human	ensembl	74_37	-1	known	missense	c.505	p.P169T	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH9	HGNC	ENSG00000113100	tier1	-	-	31	0	0.00	19	3	13.64
ENSG00000216173	0	genome.wustl.edu	37	14	99828628	99828628	+	RNA	SNP	C	C	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	99828628	99828628	C	G	SNP	ENSG00000216173	ENST00000401354	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AL132819.1	Clone_based_ensembl_gene	ENSG00000216173	tier1	-	-	24	0	0.00	13	5	27.78
IRX2	0	genome.wustl.edu	37	5	2749852	2749852	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	2749852	2749852	T	C	SNP	IRX2	ENST00000302057	human	ensembl	74_37	-1	known	missense	c.299	p.Y100C	1.000	superfamily_Homeodomain-like	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,smart_Iroquois_homeo,pfscan_Homeobox_dom	-	no_errors	IRX2	HGNC	ENSG00000170561	tier1	-	-	38	0	0.00	82	12	12.77
ARHGEF28	0	genome.wustl.edu	37	5	73189057	73189057	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	73189057	73189057	C	T	SNP	ARHGEF28	ENST00000545377	human	ensembl	74_37	+1	known	missense	c.3602	p.S1201F	0.996	NULL	pfam_DH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_DH-domain,superfamily_Ankyrin_rpt-contain_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain	-	no_errors	ARHGEF28	HGNC	ENSG00000214944	tier1	-	-	49	0	0.00	16	16	50.00
SRI	0	genome.wustl.edu	37	7	87849305	87849305	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	7	87849305	87849305	A	-	DEL	SRI	ENST00000265729	human	ensembl	74_37	-1	known	frame_shift_del	c.37	p.Y13fs	0.995	NULL	smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	SRI	HGNC	ENSG00000075142	tier1			22	0	0.00	15	2	11.76
ENOPH1	0	genome.wustl.edu	37	4	83378094	83378094	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	4	83378094	83378094	G	T	SNP	ENOPH1	ENST00000273920	human	ensembl	74_37	+1	known	missense	c.549	p.K183N	0.997	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_Enolase-ppase_E1,tigrfam_HAD-SF_hydro_IA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_Enolase-ppase_E1,tigrfam_HAD-SF_hydro_IA	-	no_errors	ENOPH1	HGNC	ENSG00000145293	tier1	-	-	73	0	0.00	29	3	9.38
PCDHAC1	0	genome.wustl.edu	37	5	140307701	140307701	+	Silent	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	140307701	140307701	C	A	SNP	PCDHAC1	ENST00000253807	human	ensembl	74_37	+1	known	silent	c.1224	p.I408	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC1	HGNC	ENSG00000248383	tier1	-	-	33	0	0.00	17	9	34.62
PCDHGB8P	0	genome.wustl.edu	37	5	140806086	140806086	+	RNA	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	140806086	140806086	C	T	SNP	PCDHGB8P	ENST00000502926	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.225	-	-	-	no_errors	PCDHGB8P	HGNC	ENSG00000248449	tier1	-	-	28	0	0.00	5	8	61.54
NPAP1	0	genome.wustl.edu	37	15	24921079	24921079	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	15	24921079	24921079	G	A	SNP	NPAP1	ENST00000329468	human	ensembl	74_37	+1	known	missense	c.65	p.R22H	0.000	NULL	NULL	-	no_errors	NPAP1	HGNC	ENSG00000185823	tier1	-	-	44	0	0.00	16	12	42.86
APOBEC3F	0	genome.wustl.edu	37	22	39439095	39439095	+	Silent	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	22	39439095	39439095	G	A	SNP	APOBEC3F	ENST00000308521	human	ensembl	74_37	+1	known	silent	c.171	p.Q57	0.066	pfam_APOBEC_N	pfam_APOBEC_N,pfam_APOBEC_C,superfamily_Cytidine_deaminase-like	-	no_errors	APOBEC3F	HGNC	ENSG00000128394	tier1	-	-	78	0	0.00	69	7	9.21
RPLP2	0	genome.wustl.edu	37	11	810010	810018	+	RNA	DEL	CTCCGCCGC	CTCCGCCGC	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	CTCCGCCGC	CTCCGCCGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	810010	810018	CTCCGCCGC	-	DEL	RPLP2	ENST00000532004	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000:0.006:0.006:0.009:0.013:0.013:0.025:0.024	-	-	-	no_errors	RPLP2	HGNC	ENSG00000177600	tier1			NA	NA	NA	NA	NA	NA
SLC25A13	0	genome.wustl.edu	37	7	95814251	95814251	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	7	95814251	95814251	A	G	SNP	SLC25A13	ENST00000416240	human	ensembl	74_37	-1	known	missense	c.1009	p.S337P	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_EF_hand_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864	tier1	-	-	58	0	0.00	62	24	27.91
ENSG00000221388	0	genome.wustl.edu	37	2	213628287	213628350	+	RNA	DEL	ATATATATGTGTATATATATATATATATATATGTGTGTGTATATATATATATATATATATGTGT	ATATATATGTGTATATATATATATATATATATGTGTGTGTATATATATATATATATATATGTGT	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	ATATATATGTGTATATATATATATATATATATGTGTGTGTATATATATATATATATATATGTGT	ATATATATGTGTATATATATATATATATATATGTGTGTGTATATATATATATATATATATGTGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	2	213628287	213628350	ATATATATGTGTATATATATATATATATATATGTGTGTGTATATATATATATATATATATGTGT	-	DEL	ENSG00000221388	ENST00000408461	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.078:0.105:0.126:0.142:0.155:0.163:0.169:0.171:0.171:0.168:0.162:0.154:0.141:0.124:0.103:0.097:0.089:0.078:0.063:0.044:0.018:0.009:0.007	-	-	-	no_errors	AC093865.1	Clone_based_ensembl_gene	ENSG00000221388	tier1			NA	NA	NA	NA	NA	NA
IRF9	0	genome.wustl.edu	37	14	24633132	24633134	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	24633132	24633134	AGC	-	DEL	IRF9	ENST00000396864	human	ensembl	74_37	+1	known	in_frame_del	c.541_543	p.S184in_frame_del	0.064:0.076:0.081	NULL	pfam_Interferon_reg_fact_DNA-bd_dom,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF9	HGNC	ENSG00000213928	tier1			14	0	0.00	8	3	27.27
AP5B1	0	genome.wustl.edu	37	11	65547285	65547285	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	65547285	65547285	G	T	SNP	AP5B1	ENST00000532090	human	ensembl	74_37	-1	novel	missense	c.679	p.L227I	0.014	NULL	NULL	-	no_errors	AP5B1	HGNC	ENSG00000254470	tier1	-	-	54	0	0.00	37	4	9.76
KRTAP9-9	0	genome.wustl.edu	37	17	39411670	39411671	+	In_Frame_Ins	INS	-	-	ACCTGCTGCAGGACC			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	17	39411670	39411671	-	ACCTGCTGCAGGACC	INS	KRTAP9-9	ENST00000394008	human	ensembl	74_37	+1	known	in_frame_ins	c.33_34	p.15in_frame_insTTCCR	0.053:0.940	NULL	NULL	-	no_errors	KRTAP9-9	HGNC	ENSG00000198083	tier1			NA	NA	NA	NA	NA	NA
ITPR1	0	genome.wustl.edu	37	3	4856236	4856236	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	3	4856236	4856236	C	A	SNP	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	missense	c.7646	p.P2549Q	1.000	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	tier1	-	-	28	0	0.00	20	4	16.67
GPR174	0	genome.wustl.edu	37	X	78427344	78427344	+	Silent	SNP	T	T	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	X	78427344	78427344	T	C	SNP	GPR174	ENST00000276077	human	ensembl	74_37	+1	known	silent	c.840	p.L280	0.987	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR174	HGNC	ENSG00000147138	tier1	-	-	23	0	0.00	7	12	63.16
CWC22	0	genome.wustl.edu	37	2	180830631	180830633	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	2	180830631	180830633	TCT	-	DEL	CWC22	ENST00000295749	human	ensembl	74_37	-1	known	in_frame_del	c.1289_1287	p.E432in_frame_del	1.000:1.000:0.963	NULL	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI	-	no_errors	CWC22	HGNC	ENSG00000163510	tier1			74	0	0.00	13	2	13.33
EP400	0	genome.wustl.edu	37	12	132547138	132547138	+	Silent	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	132547138	132547138	A	G	SNP	EP400	ENST00000333577	human	ensembl	74_37	+1	known	silent	c.8334	p.Q2778	0.021	NULL	pfam_SNF2_N,pfam_Helicase/SANT-assoc_DNA-bd,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	tier1	rs111782215	-	27	0	0.00	22	4	15.38
NCAN	0	genome.wustl.edu	37	19	19338426	19338426	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	19338426	19338426	C	T	SNP	NCAN	ENST00000252575	human	ensembl	74_37	+1	known	missense	c.1997	p.T666M	0.006	NULL	pfam_Link,pfam_C-type_lectin,pfam_Sushi_SCR_CCP,pfam_Ig_V-set,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Link,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link,prints_AntifreezeII	-	no_errors	NCAN	HGNC	ENSG00000130287	tier1	rs111534277	-	58	0	0.00	53	6	10.17
BMS1P8	0	genome.wustl.edu	37	16	33489916	33489916	+	RNA	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	16	33489916	33489916	C	A	SNP	BMS1P8	ENST00000567036	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	BMS1P8	HGNC	ENSG00000260518	tier1	-	-	15	0	0.00	13	6	31.58
CCAR1	0	genome.wustl.edu	37	10	70502216	70502216	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	10	70502216	70502216	G	T	SNP	CCAR1	ENST00000265872	human	ensembl	74_37	+1	known	missense	c.408	p.R136S	0.995	superfamily_NA-bd_OB-fold	pfam_SAP_dom,superfamily_NA-bd_OB-fold,smart_SAP_dom,pfscan_SAP_dom	-	no_errors	CCAR1	HGNC	ENSG00000060339	tier1	-	-	66	0	0.00	33	4	10.81
PSMC6	0	genome.wustl.edu	37	14	53194452	53194452	+	RNA	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	53194452	53194452	A	G	SNP	PSMC6	ENST00000557557	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSMC6	HGNC	ENSG00000100519	tier1	-	-	53	0	0.00	15	10	40.00
ENSG00000251273	0	genome.wustl.edu	37	5	25190589	25190589	+	RNA	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	25190589	25190589	G	A	SNP	ENSG00000251273	ENST00000507600	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.032	-	-	-	no_errors	RP11-549K20.1	Clone_based_vega_gene	ENSG00000251273	tier1	-	-	52	0	0.00	44	4	8.33
KIAA0040	0	genome.wustl.edu	37	1	175129925	175129927	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	175129925	175129927	CTT	-	DEL	KIAA0040	ENST00000423313	human	ensembl	74_37	-1	known	in_frame_del	c.225_223	p.K75in_frame_del	0.993:0.993:0.999	NULL	NULL	-	no_errors	KIAA0040	HGNC	ENSG00000235750	tier1			26	0	0.00	19	2	9.52
CHST10	0	genome.wustl.edu	37	2	101023037	101023037	+	Splice_Site	SNP	C	C	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	2	101023037	101023037	C	G	SNP	CHST10	ENST00000542617	human	ensembl	74_37	-1	known	splice_site	c.244+1	e3+1	1.000	-	-	-	no_errors	CHST10	HGNC	ENSG00000115526	tier1	-	-	50	0	0.00	3	19	86.36
ZNF292	0	genome.wustl.edu	37	6	87969974	87969974	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	6	87969974	87969974	T	-	DEL	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	frame_shift_del	c.6627	p.S2210fs	0.779	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	tier1			60	0	0.00	18	2	10.00
SCARB1	0	genome.wustl.edu	37	12	125267313	125267313	+	Silent	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	125267313	125267313	C	T	SNP	SCARB1	ENST00000261693	human	ensembl	74_37	-1	known	silent	c.1446	p.K482	0.972	NULL	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060	tier1	-	-	89	0	0.00	42	66	61.11
ROBO3	0	genome.wustl.edu	37	11	124747470	124747470	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	124747470	124747470	C	T	SNP	ROBO3	ENST00000397801	human	ensembl	74_37	+1	known	missense	c.2902	p.H968Y	0.998	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	ROBO3	HGNC	ENSG00000154134	tier1	-	-	69	0	0.00	41	30	42.25
ARHGEF1	0	genome.wustl.edu	37	19	42408394	42408396	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	42408394	42408396	CTG	-	DEL	ARHGEF1	ENST00000337665	human	ensembl	74_37	+1	known	in_frame_del	c.2065_2067	p.L692in_frame_del	1.000:1.000:1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RGS-like_dom,pfam_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	tier1			22	0	0.00	23	3	11.54
ZNF615	0	genome.wustl.edu	37	19	52505095	52505095	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	52505095	52505095	T	C	SNP	ZNF615	ENST00000594083	human	ensembl	74_37	-1	known	missense	c.209	p.E70G	0.000	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF615	HGNC	ENSG00000197619	tier1	-	-	65	0	0.00	42	16	27.59
CSN2	0	genome.wustl.edu	37	4	70823108	70823108	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	4	70823108	70823108	G	T	SNP	CSN2	ENST00000353151	human	ensembl	74_37	-1	known	missense	c.559	p.P187T	0.000	pfam_Casein,pirsf_Casein_beta	pfam_Casein,pirsf_Casein_beta	-	no_errors	CSN2	HGNC	ENSG00000135222	tier1	-	-	42	0	0.00	12	6	33.33
GPR82	0	genome.wustl.edu	37	X	41586873	41586873	+	Silent	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	X	41586873	41586873	C	A	SNP	GPR82	ENST00000302548	human	ensembl	74_37	+1	known	silent	c.594	p.I198	0.059	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR82	HGNC	ENSG00000171657	tier1	-	-	40	0	0.00	40	12	23.08
SMPD3	0	genome.wustl.edu	37	16	68398795	68398795	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	16	68398795	68398795	G	A	SNP	SMPD3	ENST00000219334	human	ensembl	74_37	-1	known	missense	c.1414	p.R472W	1.000	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase	-	no_errors	SMPD3	HGNC	ENSG00000103056	tier1	-	-	73	0	0.00	46	17	26.98
CYFIP1	0	genome.wustl.edu	37	15	22929738	22929738	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	15	22929738	22929738	G	T	SNP	CYFIP1	ENST00000313077	human	ensembl	74_37	+1	known	missense	c.412	p.G138W	1.000	pirsf_Cytoplasmic_FMR1-int_sub	pfam_Cytoplasmic_FMR1-int,pirsf_Cytoplasmic_FMR1-int_sub,prints_Cytoplasmic_FMR1-int	-	no_errors	CYFIP1	HGNC	ENSG00000068793	tier1	-	-	26	0	0.00	16	4	20.00
ENSG00000221279	0	genome.wustl.edu	37	7	110568408	110568413	+	RNA	DEL	CACACA	CACACA	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	CACACA	CACACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	7	110568408	110568413	CACACA	-	DEL	ENSG00000221279	ENST00000408352	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.003:0.009:0.052:0.060:0.063	-	-	-	no_errors	AC005161.1	Clone_based_ensembl_gene	ENSG00000221279	tier1			NA	NA	NA	NA	NA	NA
PTCHD2	0	genome.wustl.edu	37	1	11586796	11586796	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	1	11586796	11586796	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.2702	p.R901H	1.000	NULL	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	tier1	-	-	63	0	0.00	32	20	38.46
ADSSL1	0	genome.wustl.edu	37	14	105207463	105207463	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	105207463	105207463	G	T	SNP	ADSSL1	ENST00000332972	human	ensembl	74_37	+1	known	nonsense	c.805	p.E269*	1.000	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	pfam_Adenylosuccinate_synthetase,superfamily_P-loop_NTPase,smart_Adenylosuccinate_synthetase,tigrfam_Adenylosuccinate_synthetase	-	no_errors	ADSSL1	HGNC	ENSG00000185100	tier1	-	-	33	0	0.00	12	3	20.00
VWF	0	genome.wustl.edu	37	12	6125336	6125336	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	12	6125336	6125336	C	A	SNP	VWF	ENST00000261405	human	ensembl	74_37	-1	known	missense	c.5374	p.A1792S	0.376	pirsf_VWF,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	tier1	-	-	29	0	0.00	16	5	23.81
OR4N2	0	genome.wustl.edu	37	14	20296162	20296162	+	Silent	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	20296162	20296162	C	T	SNP	OR4N2	ENST00000315947	human	ensembl	74_37	+1	known	silent	c.555	p.I185	0.991	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4N2	HGNC	ENSG00000176294	tier1	-	-	151	0	0.00	104	10	8.77
SYCP2L	0	genome.wustl.edu	37	6	10935392	10935392	+	Silent	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	6	10935392	10935392	G	A	SNP	SYCP2L	ENST00000283141	human	ensembl	74_37	+1	known	silent	c.1785	p.L595	0.876	NULL	NULL	-	no_errors	SYCP2L	HGNC	ENSG00000153157	tier1	-	-	106	0	0.00	33	29	46.77
NME9	0	genome.wustl.edu	37	3	138023764	138023764	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	3	138023764	138023764	C	T	SNP	NME9	ENST00000333911	human	ensembl	74_37	-1	known	missense	c.742	p.V248I	0.033	pfam_Nucleoside_diP_kinase,superfamily_Nucleoside_diP_kinase,smart_Nucleoside_diP_kinase	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase,prints_Nucleoside_diP_kinase	-	no_errors	NME9	HGNC	ENSG00000181322	tier1	-	-	26	0	0.00	0	10	100.00
MUC16	0	genome.wustl.edu	37	19	9033260	9033260	+	Silent	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	19	9033260	9033260	G	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	silent	c.36366	p.L12122	0.002	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	27	0	0.00	17	4	19.05
FAT2	0	genome.wustl.edu	37	5	150932823	150932823	+	Silent	SNP	C	C	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	150932823	150932823	C	G	SNP	FAT2	ENST00000261800	human	ensembl	74_37	-1	known	silent	c.4071	p.T1357	0.167	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl_sf,smart_Cadherin,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT2	HGNC	ENSG00000086570	tier1	-	-	83	0	0.00	32	8	19.51
LOC150776	0	genome.wustl.edu	37	2	132258153	132258154	+	RNA	INS	-	-	ACCTGCTACCTACCTGCTACCTGCTACCTG			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	2	132258153	132258154	-	ACCTGCTACCTACCTGCTACCTGCTACCTG	INS	LOC150776	ENST00000438378	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:0.997	-	-	-	no_errors	AC093838.4	Clone_based_vega_gene	ENSG00000152117	tier1			NA	NA	NA	NA	NA	NA
SLC44A1	0	genome.wustl.edu	37	9	108120650	108120650	+	Silent	SNP	A	A	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	9	108120650	108120650	A	T	SNP	SLC44A1	ENST00000374720	human	ensembl	74_37	+1	known	silent	c.696	p.I232	1.000	NULL	pfam_Choline_transptr-like	-	no_errors	SLC44A1	HGNC	ENSG00000070214	tier1	-	-	82	0	0.00	76	21	21.43
ASB10	0	genome.wustl.edu	37	7	150873260	150873260	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	7	150873260	150873260	A	G	SNP	ASB10	ENST00000422024	human	ensembl	74_37	-1	known	missense	c.1478	p.L493P	0.998	pfam_SOCS_C,smart_SOCS_C,pfscan_SOCS_C	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB10	HGNC	ENSG00000146926	tier1	rs74456406	-	39	0	0.00	43	4	8.51
SLCO6A1	0	genome.wustl.edu	37	5	101834275	101834275	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	5	101834275	101834275	C	A	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	missense	c.274	p.G92C	0.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359	tier1	-	-	68	0	0.00	29	4	12.12
TRPM1	0	genome.wustl.edu	37	15	31359349	31359349	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	15	31359349	31359349	A	G	SNP	TRPM1	ENST00000542188	human	ensembl	74_37	-1	known	missense	c.586	p.S196P	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	TRPM1	HGNC	ENSG00000134160	tier1	-	-	76	0	0.00	31	23	42.59
MIR3156-1	0	genome.wustl.edu	37	10	45659534	45659535	+	RNA	DEL	TG	TG	-			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	10	45659534	45659535	TG	-	DEL	MIR3156-1	ENST00000579389	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.015:0.011	-	-	-	no_errors	MIR3156-1	HGNC	ENSG00000263476	tier1			121	0	0.00	33	4	10.81
CHD8	0	genome.wustl.edu	37	14	21869125	21869125	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	14	21869125	21869125	C	A	SNP	CHD8	ENST00000399982	human	ensembl	74_37	-1	known	missense	c.4279	p.D1427Y	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_P-loop_NTPase,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	tier1	-	-	44	0	0.00	21	4	16.00
NPAT	0	genome.wustl.edu	37	11	108043652	108043652	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	11	108043652	108043652	G	T	SNP	NPAT	ENST00000278612	human	ensembl	74_37	-1	known	missense	c.2059	p.L687M	0.001	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	tier1	-	-	30	0	0.00	7	3	30.00
PRSS53	0	genome.wustl.edu	37	16	31098211	31098211	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AATS-01A-12D-A417-09	TCGA-DX-AATS-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	43fdb154-9d2c-4534-bd95-7d1a697adaca	e7741100-a22b-4389-9dcc-838eeff5765e	16	31098211	31098211	G	A	SNP	PRSS53	ENST00000280606	human	ensembl	74_37	-1	known	missense	c.251	p.A84V	0.000	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1	pfam_Peptidase_S1,pfam_Peptidase_S1A_nudel,superfamily_Trypsin-like_Pept_dom,smart_Peptidase_S1,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	PRSS53	HGNC	ENSG00000151006	tier1	-	-	37	0	0.00	3	9	75.00
