Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
DHX32	0	genome.wustl.edu	37	10	127555678	127555678	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	10	127555678	127555678	G	T	SNP	DHX32	ENST00000284690	human	ensembl	74_37	-1	known	missense	c.357	p.H119Q	0.997	superfamily_P-loop_NTPase,pfscan_Helicase_ATP-bd	pfam_Helicase-assoc_dom,pfam_DUF1605,superfamily_P-loop_NTPase,smart_Helicase-assoc_dom,pfscan_Helicase_ATP-bd	-	no_errors	DHX32	HGNC	ENSG00000089876	tier1	-	-	35	0	0.00	41	4	8.89
FMNL2	0	genome.wustl.edu	37	2	153475531	153475531	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	153475531	153475531	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1486	p.V496I	0.896	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	39	0	0.00	76	13	14.61
FMNL2	0	genome.wustl.edu	37	2	153475473	153475473	+	Silent	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	153475473	153475473	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	silent	c.1428	p.E476	1.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	48	0	0.00	66	12	15.38
SEPT5	0	genome.wustl.edu	37	22	19706405	19706474	+	Splice_Site	DEL	GGTCCCCGTCCCCGCGCGCCACGGCCCGCCAGCGCCTAGGCTCAGCCCTTCCCTCCGCAGCGGCCTCGCA	GGTCCCCGTCCCCGCGCGCCACGGCCCGCCAGCGCCTAGGCTCAGCCCTTCCCTCCGCAGCGGCCTCGCA	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	GGTCCCCGTCCCCGCGCGCCACGGCCCGCCAGCGCCTAGGCTCAGCCCTTCCCTCCGCAGCGGCCTCGCA	GGTCCCCGTCCCCGCGCGCCACGGCCCGCCAGCGCCTAGGCTCAGCCCTTCCCTCCGCAGCGGCCTCGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	22	19706405	19706474	GGTCCCCGTCCCCGCGCGCCACGGCCCGCCAGCGCCTAGGCTCAGCCCTTCCCTCCGCAGCGGCCTCGCA	-	DEL	SEPT5	ENST00000490204	human	ensembl	74_37	+1	putative	splice_site_del	c.NULL	NULL	0.001:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.001:0.000:0.228:0.234:0.241:0.322:0.327:0.699:0.694:0.703:0.739:0.769:0.806:0.810:0.791:0.694:0.664:0.665:0.662:0.840:0.858:0.920:0.932:0.929:0.905:0.868:0.689:0.525:0.473:0.458:0.371:0.369:0.365:0.319:0.270:0.205:0.118:0.062:0.038:0.026:0.037:0.153:0.410:0.429:0.415:0.344:0.328:0.109:0.017:0.008:0.013:0.016:0.014:0.010:0.028:0.026:0.027:0.003:0.000:0.000	-	-	-	no_errors	SEPT5	HGNC	ENSG00000184702	tier1			NA	NA	NA	NA	NA	NA
CARD10	0	genome.wustl.edu	37	22	37906309	37906314	+	In_Frame_Del	DEL	CTCCTT	CTCCTT	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	CTCCTT	CTCCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	22	37906309	37906314	CTCCTT	-	DEL	CARD10	ENST00000251973	human	ensembl	74_37	-1	known	in_frame_del	c.819_814	p.KE272in_frame_del	0.939:0.949:0.957:0.963:0.966:0.967	NULL	pfam_CARD,superfamily_DEATH-like_dom,pfscan_CARD	-	no_errors	CARD10	HGNC	ENSG00000100065	tier1			NA	NA	NA	NA	NA	NA
SEC16A	0	genome.wustl.edu	37	9	139360765	139360765	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	9	139360765	139360765	G	-	DEL	SEC16A	ENST00000313050	human	ensembl	74_37	-1	known	frame_shift_del	c.4079	p.A1360fs	0.006	NULL	NULL	-	no_errors	SEC16A	HGNC	ENSG00000148396	tier1			59	0	0.00	85	35	29.17
ATP2C2	0	genome.wustl.edu	37	16	84444193	84444193	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	16	84444193	84444193	C	T	SNP	ATP2C2	ENST00000262429	human	ensembl	74_37	+1	known	missense	c.437	p.T146I	0.993	pfam_ATPase_P-typ_transduc_dom_A,tigrfam_ATPase_P-typ_Ca-transp_PMR1	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Ca-transp_PMR1,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP2C2	HGNC	ENSG00000064270	tier1	-	-	22	0	0.00	34	8	19.05
EXOC4	0	genome.wustl.edu	37	7	133749328	133749329	+	RNA	INS	-	-	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	7	133749328	133749329	-	T	INS	EXOC4	ENST00000466000	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	EXOC4	HGNC	ENSG00000131558	tier1			8	0	0.00	15	8	34.78
DNM1P51	0	genome.wustl.edu	37	15	84954198	84954212	+	RNA	DEL	ATGGGCATGCTGACG	ATGGGCATGCTGACG	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	ATGGGCATGCTGACG	ATGGGCATGCTGACG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	15	84954198	84954212	ATGGGCATGCTGACG	-	DEL	DNM1P51	ENST00000558801	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:0.996:0.997:0.997:0.990:0.993:1.000:1.000:1.000:0.991:0.992:0.989:0.996:0.997:1.000	-	-	-	no_errors	DNM1P51	HGNC	ENSG00000235370	tier1			NA	NA	NA	NA	NA	NA
HTR3B	0	genome.wustl.edu	37	11	113803102	113803102	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	11	113803102	113803102	G	T	SNP	HTR3B	ENST00000260191	human	ensembl	74_37	+1	known	missense	c.460	p.A154S	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_B,prints_5HT3_rcpt,prints_Neur_channel,prints_5HT3_rcpt_A,tigrfam_Neur_channel	-	no_errors	HTR3B	HGNC	ENSG00000149305	tier1	-	-	33	0	0.00	24	3	11.11
FMNL2	0	genome.wustl.edu	37	2	153475615	153475615	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	153475615	153475615	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1570	p.G524R	0.686	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	31	0	0.00	119	21	15.00
BRWD3	0	genome.wustl.edu	37	X	79989633	79989633	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	X	79989633	79989633	T	G	SNP	BRWD3	ENST00000373275	human	ensembl	74_37	-1	known	missense	c.1070	p.E357A	1.000	pfam_WD40_repeat,superfamily_Quino_amine_DH_bsu,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Bromodomain,superfamily_Quino_amine_DH_bsu,superfamily_Bromodomain,smart_WD40_repeat,smart_Bromodomain,pfscan_Bromodomain,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Bromodomain	-	no_errors	BRWD3	HGNC	ENSG00000165288	tier1	-	-	177	0	0.00	89	29	24.58
DLGAP1-AS1	0	genome.wustl.edu	37	18	3597089	3597090	+	RNA	INS	-	-	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	18	3597089	3597090	-	T	INS	DLGAP1-AS1	ENST00000317114	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.002	-	-	-	no_errors	DLGAP1-AS1	HGNC	ENSG00000177337	tier1			27	0	0.00	41	6	12.77
CAPZA1	0	genome.wustl.edu	37	1	113202209	113202209	+	RNA	DEL	T	T	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	1	113202209	113202209	T	-	DEL	CAPZA1	ENST00000466066	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.039	-	-	-	no_errors	CAPZA1	HGNC	ENSG00000116489	tier1			29	0	0.00	36	4	10.00
OR6T1	0	genome.wustl.edu	37	11	123813912	123813912	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	11	123813912	123813912	C	A	SNP	OR6T1	ENST00000321252	human	ensembl	74_37	-1	known	missense	c.634	p.A212S	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6T1	HGNC	ENSG00000181499	tier1	-	-	35	0	0.00	5	24	82.76
NOS2	0	genome.wustl.edu	37	17	26101441	26101441	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	17	26101441	26101441	C	T	SNP	NOS2	ENST00000313735	human	ensembl	74_37	-1	known	missense	c.1318	p.A440T	0.434	pfam_NO_synthase_oxygenase_dom,superfamily_NO_synthase_oxygenase_dom,pirsf_NOS_euk	pfam_NO_synthase_oxygenase_dom,pfam_FAD-binding_1,pfam_Flavodoxin/NO_synth,pfam_OxRdtase_FAD/NAD-bd,superfamily_NO_synthase_oxygenase_dom,superfamily_Riboflavin_synthase-like_b-brl,pirsf_NOS_euk,pfscan_Flavodoxin/NO_synth,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase,prints_Flavdoxin	-	no_errors	NOS2	HGNC	ENSG00000007171	tier1	-	-	35	0	0.00	60	6	9.09
TMPRSS15	0	genome.wustl.edu	37	21	19732162	19732162	+	Silent	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	21	19732162	19732162	G	A	SNP	TMPRSS15	ENST00000284885	human	ensembl	74_37	-1	known	silent	c.792	p.S264	0.954	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_Peptidase_S1,pfam_CUB_dom,pfam_MAM_dom,pfam_SEA_dom,pfam_LDrepeatLR_classA_rpt,pfam_Peptidase_S1A_nudel,pfam_SRCR,superfamily_Trypsin-like_Pept_dom,superfamily_ConA-like_lec_gl_sf,superfamily_CUB_dom,superfamily_LDrepeatLR_classA_rpt,superfamily_Srcr_rcpt-rel,smart_SEA_dom,smart_LDrepeatLR_classA_rpt,smart_CUB_dom,smart_MAM_dom,smart_Srcr_rcpt-rel,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_MAM_dom,pfscan_SEA_dom,pfscan_SRCR,pfscan_Peptidase_S1,prints_Peptidase_S1A,prints_LDrepeatLR_classA_rpt	-	no_errors	TMPRSS15	HGNC	ENSG00000154646	tier1	-	-	141	1	0.70	42	23	35.38
ENSG00000221060	0	genome.wustl.edu	37	14	70270922	70270922	+	RNA	DEL	T	T	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	14	70270922	70270922	T	-	DEL	ENSG00000221060	ENST00000408133	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.003	-	-	-	no_errors	SNORA11	RFAM	ENSG00000221060	tier1			9	0	0.00	8	4	33.33
DKK1	0	genome.wustl.edu	37	10	54074610	54074610	+	RNA	SNP	C	C	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	10	54074610	54074610	C	T	SNP	DKK1	ENST00000467359	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	DKK1	HGNC	ENSG00000107984	tier1	-	-	48	0	0.00	42	5	10.64
FMNL2	0	genome.wustl.edu	37	2	153475465	153475465	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	153475465	153475465	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1420	p.E474K	1.000	pfam_FH3_dom	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	50	0	0.00	67	11	14.10
CCDC40	0	genome.wustl.edu	37	17	78064186	78064248	+	Frame_Shift_Del	DEL	AGCACGTGCATGAACAACACAGGACACACACAGCACGTGCATGAACAACACAGGACACACACA	AGCACGTGCATGAACAACACAGGACACACACAGCACGTGCATGAACAACACAGGACACACACA	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	AGCACGTGCATGAACAACACAGGACACACACAGCACGTGCATGAACAACACAGGACACACACA	AGCACGTGCATGAACAACACAGGACACACACAGCACGTGCATGAACAACACAGGACACACACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	17	78064186	78064248	AGCACGTGCATGAACAACACAGGACACACACAGCACGTGCATGAACAACACAGGACACACACA	-	DEL	CCDC40	ENST00000374877	human	ensembl	74_37	+1	known	frame_shift_del	c.3081_3093	p.A1028fs	0.037:0.042:0.046:0.050:0.053:0.056:0.059:0.062:0.065:0.067:0.068:0.070:0.071	NULL	pfam_E3_ubiquit_lig_BRE1	-	no_errors	CCDC40	HGNC	ENSG00000141519	tier1			NA	NA	NA	NA	NA	NA
USP7	0	genome.wustl.edu	37	16	8988658	8988658	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	16	8988658	8988658	C	T	SNP	USP7	ENST00000344836	human	ensembl	74_37	-1	known	missense	c.3094	p.E1032K	1.000	NULL	pfam_Peptidase_C19/C67,pfam_MATH,pfam_USP7_ICP0-binding_dom,superfamily_TRAF-like,smart_MATH,pfscan_MATH,pfscan_Peptidase_C19/C67	-	no_errors	USP7	HGNC	ENSG00000187555	tier1	-	-	23	0	0.00	59	10	14.49
EIF4G3	0	genome.wustl.edu	37	1	21167469	21167469	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	1	21167469	21167469	A	G	SNP	EIF4G3	ENST00000374937	human	ensembl	74_37	-1	known	missense	c.3791	p.F1264S	1.000	pfam_Initiation_fac_eIF4g_MI,superfamily_ARM-type_fold,smart_Initiation_fac_eIF4g_MI	pfam_MIF4G-like_typ-3,pfam_Initiation_fac_eIF4g_MI,pfam_W2_domain,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3,smart_Initiation_fac_eIF4g_MI,smart_W2_domain	-	no_errors	EIF4G3	HGNC	ENSG00000075151	tier1	-	-	47	0	0.00	54	32	37.21
FMNL2	0	genome.wustl.edu	37	2	153475500	153475500	+	Silent	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	153475500	153475500	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	silent	c.1455	p.K485	1.000	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	40	0	0.00	69	15	17.86
ENPEP	0	genome.wustl.edu	37	4	111427892	111427893	+	In_Frame_Ins	INS	-	-	ATT			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	4	111427892	111427893	-	ATT	INS	ENPEP	ENST00000265162	human	ensembl	74_37	+1	known	in_frame_ins	c.1018_1019	p.342in_frame_insY	0.001:0.000	pfam_Peptidase_M1_N	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	tier1			56	0	0.00	17	2	10.53
SIX4	0	genome.wustl.edu	37	14	61180804	61180804	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	14	61180804	61180804	G	A	SNP	SIX4	ENST00000216513	human	ensembl	74_37	-1	known	missense	c.1667	p.T556M	1.000	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	-	no_errors	SIX4	HGNC	ENSG00000100625	tier1	-	-	42	0	0.00	32	14	30.43
UGT3A2	0	genome.wustl.edu	37	5	36035888	36035888	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	5	36035888	36035888	A	T	SNP	UGT3A2	ENST00000282507	human	ensembl	74_37	-1	known	missense	c.1484	p.L495H	0.019	pfam_UDP_glucos_trans	pfam_UDP_glucos_trans,pfam_Glyco_trans_28_C	-	no_errors	UGT3A2	HGNC	ENSG00000168671	tier1	-	-	17	0	0.00	26	15	36.59
LOR	0	genome.wustl.edu	37	1	153233991	153233992	+	In_Frame_Ins	INS	-	-	CTCTGGCGGCGG			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	1	153233991	153233992	-	CTCTGGCGGCGG	INS	LOR	ENST00000368742	human	ensembl	74_37	+1	known	in_frame_ins	c.566_567	p.193in_frame_insGSGG	0.014:0.200	NULL	NULL	-	no_errors	LOR	HGNC	ENSG00000203782	tier1			NA	NA	NA	NA	NA	NA
IGDCC3	0	genome.wustl.edu	37	15	65621811	65621811	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	15	65621811	65621811	C	A	SNP	IGDCC3	ENST00000327987	human	ensembl	74_37	-1	known	missense	c.2122	p.D708Y	0.007	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	IGDCC3	HGNC	ENSG00000174498	tier1	-	-	60	0	0.00	50	31	38.27
KIAA0355	0	genome.wustl.edu	37	19	34819042	34819042	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	19	34819042	34819042	C	G	SNP	KIAA0355	ENST00000299505	human	ensembl	74_37	+1	known	missense	c.1090	p.L364V	1.000	NULL	NULL	-	no_errors	KIAA0355	HGNC	ENSG00000166398	tier1	-	-	30	0	0.00	49	9	15.52
FMNL2	0	genome.wustl.edu	37	2	153475423	153475423	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	153475423	153475423	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1378	p.E460K	1.000	pfam_FH3_dom	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	50	0	0.00	58	12	17.14
FMNL2	0	genome.wustl.edu	37	2	153475564	153475564	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	153475564	153475564	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1519	p.E507K	0.085	prints_Wilms_tumour	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	28	0	0.00	78	13	14.29
CD86	0	genome.wustl.edu	37	3	121822505	121822505	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	3	121822505	121822505	G	C	SNP	CD86	ENST00000330540	human	ensembl	74_37	+1	known	missense	c.211	p.G71R	0.603	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	CD86	HGNC	ENSG00000114013	tier1	-	-	74	0	0.00	49	21	30.00
OTOA	0	genome.wustl.edu	37	16	21702929	21702929	+	Silent	SNP	C	C	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	16	21702929	21702929	C	T	SNP	OTOA	ENST00000286149	human	ensembl	74_37	+1	known	silent	c.660	p.Y220	0.567	NULL	NULL	-	no_errors	OTOA	HGNC	ENSG00000155719	tier1	rs139292090	GMAF=0.0005	54	0	0.00	22	23	51.11
SLC19A1	0	genome.wustl.edu	37	21	46935022	46935022	+	Silent	SNP	A	A	G			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	21	46935022	46935022	A	G	SNP	SLC19A1	ENST00000380010	human	ensembl	74_37	-1	putative	silent	c.1338	p.H446	0.000	pirsf_Folate_carrier	pfam_Folate_carrier,superfamily_MFS_dom_general_subst_transpt,pirsf_Folate_carrier,tigrfam_Folate_carrier	-	no_errors	SLC19A1	HGNC	ENSG00000173638	tier1	-	-	18	0	0.00	29	11	27.50
HLA-DRB6	0	genome.wustl.edu	37	6	32520830	32520844	+	RNA	DEL	AGGAGTCCAGCGCAG	AGGAGTCCAGCGCAG	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	AGGAGTCCAGCGCAG	AGGAGTCCAGCGCAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	6	32520830	32520844	AGGAGTCCAGCGCAG	-	DEL	HLA-DRB6	ENST00000411500	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.975:0.991:0.996:0.997:0.995:0.988:0.985:0.943:0.810:0.673:0.530:0.488:0.478:0.468:0.458	-	-	-	no_errors	HLA-DRB6	HGNC	ENSG00000229391	tier1			NA	NA	NA	NA	NA	NA
CNTNAP3B	0	genome.wustl.edu	37	9	43844193	43844193	+	Silent	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	9	43844193	43844193	G	A	SNP	CNTNAP3B	ENST00000377564	human	ensembl	74_37	+1	known	silent	c.1527	p.G509	0.004	pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Coagulation_fac_5/8-C_type_dom,smart_Laminin_G,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_Laminin_G	-	no_errors	CNTNAP3B	HGNC	ENSG00000154529	tier1	rs199599712	-	30	0	0.00	89	11	11.00
ZNF182	0	genome.wustl.edu	37	X	47842772	47842772	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	X	47842772	47842772	G	T	SNP	ZNF182	ENST00000305127	human	ensembl	74_37	-1	known	missense	c.112	p.Q38K	0.877	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF182	HGNC	ENSG00000147118	tier1	-	-	70	0	0.00	62	24	27.91
ENSG00000221704	0	genome.wustl.edu	37	2	236480576	236480577	+	RNA	INS	-	-	TGTGTGTGTG			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	236480576	236480577	-	TGTGTGTGTG	INS	ENSG00000221704	ENST00000408777	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.083:0.055	-	-	-	no_errors	AC012305.1	Clone_based_ensembl_gene	ENSG00000221704	tier1			NA	NA	NA	NA	NA	NA
MMP26	0	genome.wustl.edu	37	11	5013310	5013310	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	11	5013310	5013310	T	C	SNP	MMP26	ENST00000300762	human	ensembl	74_37	+1	known	missense	c.712	p.F238L	0.898	pfam_Pept_M10_metallopeptidase,smart_Peptidase_Metallo	pfam_Pept_M10_metallopeptidase,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,prints_Pept_M10A	-	no_errors	MMP26	HGNC	ENSG00000167346	tier1	-	-	35	0	0.00	32	9	21.95
PIK3C2B	0	genome.wustl.edu	37	1	204419217	204419218	+	RNA	INS	-	-	AGGCTG			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	1	204419217	204419218	-	AGGCTG	INS	PIK3C2B	ENST00000479079	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PIK3C2B	HGNC	ENSG00000133056	tier1			NA	NA	NA	NA	NA	NA
ZIM2	0	genome.wustl.edu	37	19	57301291	57301291	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	19	57301291	57301291	T	-	DEL	ZIM2	ENST00000221722	human	ensembl	74_37	-1	known	frame_shift_del	c.426	p.E143fs	0.000	NULL	pfam_Krueppel-associated_box,pfam_Znf_C2H2,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZIM2	HGNC	ENSG00000269699	tier1			37	0	0.00	76	16	17.39
LOC100293748	0	genome.wustl.edu	37	1	149261581	149261581	+	RNA	SNP	G	G	C			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	1	149261581	149261581	G	C	SNP	LOC100293748	ENST00000325963	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-403I13.4	Clone_based_vega_gene	ENSG00000223779	tier1	rs77998576	-	27	0	0.00	25	5	16.67
TTC12	0	genome.wustl.edu	37	11	113233190	113233190	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	11	113233190	113233190	C	T	SNP	TTC12	ENST00000314756	human	ensembl	74_37	+1	known	missense	c.1682	p.A561V	0.932	superfamily_ARM-type_fold	pfam_TPR_1,superfamily_ARM-type_fold,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC12	HGNC	ENSG00000149292	tier1	-	-	54	0	0.00	42	4	8.70
CPNE4	0	genome.wustl.edu	37	3	131253882	131253883	+	RNA	INS	-	-	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	3	131253882	131253883	-	A	INS	CPNE4	ENST00000503204	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	CPNE4	HGNC	ENSG00000196353	tier1			10	0	0.00	11	13	54.17
GRHL2	0	genome.wustl.edu	37	8	102570802	102570802	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	8	102570802	102570802	C	T	SNP	GRHL2	ENST00000251808	human	ensembl	74_37	+1	known	missense	c.440	p.S147F	0.803	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	tier1	-	-	37	0	0.00	15	19	54.29
PCDHA7	0	genome.wustl.edu	37	5	140214891	140214891	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	5	140214891	140214891	T	A	SNP	PCDHA7	ENST00000525929	human	ensembl	74_37	+1	known	missense	c.923	p.M308K	0.079	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA7	HGNC	ENSG00000204963	tier1	-	-	55	0	0.00	22	6	21.43
RBM5	0	genome.wustl.edu	37	3	50150739	50150739	+	RNA	DEL	T	T	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	3	50150739	50150739	T	-	DEL	RBM5	ENST00000474470	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	RBM5	HGNC	ENSG00000003756	tier1			27	0	0.00	27	3	10.00
ABCA3	0	genome.wustl.edu	37	16	2329036	2329036	+	Silent	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	16	2329036	2329036	G	A	SNP	ABCA3	ENST00000301732	human	ensembl	74_37	-1	known	silent	c.4455	p.G1485	0.995	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA3	HGNC	ENSG00000167972	tier1	-	-	94	0	0.00	106	58	34.73
LOC101927016	0	genome.wustl.edu	37	13	64321006	64321065	+	In_Frame_Del	DEL	GGCTATGGCTATGGCTCCAGCTATGGCTGTGGCTATGGAACTGGCTACAGCTGTGGCTAT	GGCTATGGCTATGGCTCCAGCTATGGCTGTGGCTATGGAACTGGCTACAGCTGTGGCTAT	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	GGCTATGGCTATGGCTCCAGCTATGGCTGTGGCTATGGAACTGGCTACAGCTGTGGCTAT	GGCTATGGCTATGGCTCCAGCTATGGCTGTGGCTATGGAACTGGCTACAGCTGTGGCTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	13	64321006	64321065	GGCTATGGCTATGGCTCCAGCTATGGCTGTGGCTATGGAACTGGCTACAGCTGTGGCTAT	-	DEL	LOC101927016	ENST00000453638	human	ensembl	74_37	+1	known	in_frame_del	c.73_132	p.YGYGSSYGCGYGTGYSCGYG26in_frame_del	0.111:0.111:0.092:0.071:0.001:0.001:0.009:0.016:0.021:0.025:0.023:0.041:0.045:0.040:0.012:0.006:0.000:0.000:0.003:0.032:0.058:0.371:0.475:0.657:0.749:0.788:0.811:0.826:0.827:0.810:0.797:0.742:0.540:0.524:0.464:0.447:0.424:0.384:0.151:0.044:0.012:0.001:0.001:0.000:0.000:0.002:0.002:0.002:0.002:0.005:0.004:0.003:0.000:0.002:0.008:0.017:0.061:0.228:0.298:0.660	NULL	NULL	-	no_errors	AL445989.1	Clone_based_ensembl_gene	ENSG00000226974	tier1			NA	NA	NA	NA	NA	NA
ENSG00000216127	0	genome.wustl.edu	37	5	171866687	171866688	+	RNA	DEL	CA	CA	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	5	171866687	171866688	CA	-	DEL	ENSG00000216127	ENST00000401308	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.026:0.017	-	-	-	no_errors	AC011407.1	Clone_based_ensembl_gene	ENSG00000216127	tier1			30	0	0.00	25	5	16.67
FMNL2	0	genome.wustl.edu	37	2	153475623	153475623	+	Silent	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	153475623	153475623	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	silent	c.1578	p.L526	0.733	NULL	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	30	0	0.00	114	23	16.79
STRN4	0	genome.wustl.edu	37	19	47225504	47225504	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	19	47225504	47225504	C	A	SNP	STRN4	ENST00000391910	human	ensembl	74_37	-1	known	missense	c.2021	p.R674L	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Striatin_N,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	STRN4	HGNC	ENSG00000090372	tier1	-	-	29	0	0.00	53	5	8.47
TTLL11	0	genome.wustl.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	9	124855330	124855331	-	TGGCCT	INS	TTLL11	ENST00000321582	human	ensembl	74_37	-1	known	in_frame_ins	c.368_367	p.123in_frame_insKA	0.000:0.000	NULL	pfam_TTL/TTLL_fam	-	no_errors	TTLL11	HGNC	ENSG00000175764	tier1			NA	NA	NA	NA	NA	NA
TOE1	0	genome.wustl.edu	37	1	45808994	45808994	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	1	45808994	45808994	G	T	SNP	TOE1	ENST00000372090	human	ensembl	74_37	+1	known	missense	c.1153	p.A385S	0.017	pfam_RNase_CAF1	pfam_RNase_CAF1,pfam_Znf_CCCH,superfamily_RNaseH-like_dom	-	no_errors	TOE1	HGNC	ENSG00000132773	tier1	-	-	44	0	0.00	45	4	8.16
CDK5RAP3	0	genome.wustl.edu	37	17	46053334	46053334	+	Silent	SNP	A	A	G			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	17	46053334	46053334	A	G	SNP	CDK5RAP3	ENST00000338399	human	ensembl	74_37	+1	known	silent	c.753	p.E251	1.000	pfam_DUF773	pfam_DUF773	-	no_errors	CDK5RAP3	HGNC	ENSG00000108465	tier1	rs202125432	-	48	0	0.00	61	8	11.59
MYH6	0	genome.wustl.edu	37	14	23853824	23853824	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	14	23853824	23853824	G	A	SNP	MYH6	ENST00000356287	human	ensembl	74_37	-1	known	missense	c.5392	p.R1798W	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH6	HGNC	ENSG00000197616	tier1	-	-	33	0	0.00	58	35	37.63
POT1	0	genome.wustl.edu	37	7	124493077	124493077	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	7	124493077	124493077	C	T	SNP	POT1	ENST00000357628	human	ensembl	74_37	-1	known	missense	c.818	p.R273Q	1.000	superfamily_NA-bd_OB-fold	pfam_Telomer_end-bd_POT1/Cdc13,superfamily_NA-bd_OB-fold,smart_Telomer_end-bd_POT1/Cdc13	-	no_errors	POT1	HGNC	ENSG00000128513	tier1	-	-	108	0	0.00	67	12	15.19
WNK3	0	genome.wustl.edu	37	X	54319436	54319436	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	X	54319436	54319436	A	T	SNP	WNK3	ENST00000354646	human	ensembl	74_37	-1	known	missense	c.1922	p.I641N	0.410	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase_OSR1/WNK_CCT,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	WNK3	HGNC	ENSG00000196632	tier1	-	-	113	0	0.00	74	13	14.94
FHDC1	0	genome.wustl.edu	37	4	153875437	153875437	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	4	153875437	153875437	G	A	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	missense	c.629	p.R210Q	0.960	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460	tier1	-	-	28	0	0.00	3	24	88.89
CABP2	0	genome.wustl.edu	37	11	67288529	67288529	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	11	67288529	67288529	C	T	SNP	CABP2	ENST00000294288	human	ensembl	74_37	-1	known	missense	c.346	p.E116K	1.000	NULL	pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	CABP2	HGNC	ENSG00000167791	tier1	rs140767804	-	35	0	0.00	25	25	50.00
RNF219	0	genome.wustl.edu	37	13	79219033	79219033	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	13	79219033	79219033	G	T	SNP	RNF219	ENST00000282003	human	ensembl	74_37	-1	known	missense	c.172	p.P58T	1.000	NULL	pfscan_Znf_RING	-	no_errors	RNF219	HGNC	ENSG00000152193	tier1	-	-	74	0	0.00	46	4	8.00
FMNL2	0	genome.wustl.edu	37	2	153475589	153475589	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	2	153475589	153475589	G	A	SNP	FMNL2	ENST00000288670	human	ensembl	74_37	+1	known	missense	c.1544	p.G515E	0.991	prints_Wilms_tumour	pfam_FH2_Formin,pfam_FH3_dom,pfam_GTPase-bd,superfamily_ARM-type_fold,smart_FH2_Formin,prints_Wilms_tumour	-	no_errors	FMNL2	HGNC	ENSG00000157827	tier1	-	-	32	0	0.00	107	17	13.71
IRF5	0	genome.wustl.edu	37	7	128587352	128587381	+	In_Frame_Del	DEL	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	7	128587352	128587381	ACTCTGCAGCCGCCCACTCTGCGGCCGCCT	-	DEL	IRF5	ENST00000357234	human	ensembl	74_37	+1	known	in_frame_del	c.550_579	p.PPTLRPPTLQ187in_frame_del	0.766:0.707:0.638:0.562:0.538:0.511:0.480:0.444:0.402:0.360:0.317:0.273:0.262:0.251:0.239:0.226:0.213:0.199:0.185:0.170:0.155:0.138:0.122:0.120:0.118:0.116:0.113:0.110:0.107:0.104	NULL	pfam_Interferon_reg_factor-3,pfam_Interferon_reg_fact_DNA-bd_dom,superfamily_SMAD_FHA_domain,smart_Interferon_reg_fact_DNA-bd_dom,prints_Interferon_reg_fact_DNA-bd_dom	-	no_errors	IRF5	HGNC	ENSG00000128604	tier1			NA	NA	NA	NA	NA	NA
CHRM2	0	genome.wustl.edu	37	7	136700328	136700328	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	7	136700328	136700328	G	A	SNP	CHRM2	ENST00000320658	human	ensembl	74_37	+1	known	missense	c.716	p.R239K	0.862	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Musac_Ach_M2_rcpt,prints_Musac_Ach_rcpt,prints_GPCR_Rhodpsn	-	no_errors	CHRM2	HGNC	ENSG00000181072	tier1	-	-	24	0	0.00	30	10	25.00
LOC100131825	0	genome.wustl.edu	37	1	159170734	159170734	+	RNA	SNP	G	G	A			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	1	159170734	159170734	G	A	SNP	LOC100131825	ENST00000415675	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.123	-	-	-	no_errors	CTA-134P22.2	Clone_based_vega_gene	ENSG00000225670	tier1	-	-	49	0	0.00	42	22	34.38
SLC25A5	0	genome.wustl.edu	37	X	118603706	118603707	+	Frame_Shift_Ins	INS	-	-	G			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	X	118603706	118603707	-	G	INS	SLC25A5	ENST00000317881	human	ensembl	74_37	+1	known	frame_shift_ins	c.194_195	p.V67fs	1.000:1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Aden_trnslctor	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier,prints_Aden_trnslctor	-	no_errors	SLC25A5	HGNC	ENSG00000005022	tier1			40	0	0.00	30	4	11.76
FAM47C	0	genome.wustl.edu	37	X	37026524	37026524	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	X	37026524	37026524	G	T	SNP	FAM47C	ENST00000358047	human	ensembl	74_37	+1	known	missense	c.41	p.G14V	0.039	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	tier1	-	-	76	0	0.00	107	21	16.41
ENSG00000261553	0	genome.wustl.edu	37	13	76123902	76123916	+	RNA	DEL	GGCGGCGGCGGCGAA	GGCGGCGGCGGCGAA	-			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	GGCGGCGGCGGCGAA	GGCGGCGGCGGCGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	13	76123902	76123916	GGCGGCGGCGGCGAA	-	DEL	ENSG00000261553	ENST00000563635	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.972:0.982:0.960:0.622:0.506:0.040:0.014:0.013:0.030:0.026:0.014:0.007:0.004:0.000:0.000	-	-	-	no_errors	RP11-29G8.3	Clone_based_vega_gene	ENSG00000261553	tier1			NA	NA	NA	NA	NA	NA
LOC642361	0	genome.wustl.edu	37	10	81586763	81586764	+	RNA	INS	-	-	TCGCCTCGCC			TCGA-DX-AB2F-01A-11D-A387-09	TCGA-DX-AB2F-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	1dbf015e-3809-436e-b7c4-d2b40266bd0f	b9ce481f-768d-40b6-aa4a-b571e5069c27	10	81586763	81586764	-	TCGCCTCGCC	INS	LOC642361	ENST00000605920	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.302:0.319	-	-	-	no_errors	RP11-182L21.6	Clone_based_vega_gene	ENSG00000272447	tier1			NA	NA	NA	NA	NA	NA
