Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
ELL2	0	genome.wustl.edu	37	5	95236750	95236750	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	5	95236750	95236750	G	A	SNP	ELL2	ENST00000237853	human	ensembl	74_37	-1	known	missense	c.776	p.T259I	1.000	pfam_RNA_pol_II_elong_fac_ELL	pfam_RNA_pol_II_elong_fac_ELL,pfam_Occludin_RNApol2_elong_fac_ELL	-	no_errors	ELL2	HGNC	ENSG00000118985	tier1	-	-	43	0	0.00	29	25	46.30
KLF6	0	genome.wustl.edu	37	10	3824222	3824223	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	3824222	3824223	-	A	INS	KLF6	ENST00000497571	human	ensembl	74_37	-1	known	frame_shift_ins	c.287_286	p.C96fs	0.628:0.578	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF6	HGNC	ENSG00000067082	tier1			34	0	0.00	27	22	44.90
HCN1	0	genome.wustl.edu	37	5	45695937	45695937	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	5	45695937	45695937	G	A	SNP	HCN1	ENST00000303230	human	ensembl	74_37	-1	known	missense	c.259	p.P87S	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN1	HGNC	ENSG00000164588	tier1	-	-	37	0	0.00	25	12	31.58
KIAA1217	0	genome.wustl.edu	37	10	24832973	24832973	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	24832973	24832973	G	A	SNP	KIAA1217	ENST00000376454	human	ensembl	74_37	+1	known	missense	c.4774	p.G1592R	1.000	NULL	pfam_AIP3_C	-	no_errors	KIAA1217	HGNC	ENSG00000120549	tier1	-	-	66	0	0.00	74	41	35.65
TCHHL1	0	genome.wustl.edu	37	1	152057988	152057988	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	152057988	152057988	G	T	SNP	TCHHL1	ENST00000368806	human	ensembl	74_37	-1	known	missense	c.2170	p.L724I	0.000	NULL	pfam_S100_Ca-bd_sub	-	no_errors	TCHHL1	HGNC	ENSG00000182898	tier1	-	-	33	0	0.00	28	24	46.15
PYCR1	0	genome.wustl.edu	37	17	79894727	79894727	+	Silent	SNP	T	T	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	17	79894727	79894727	T	C	SNP	PYCR1	ENST00000402252	human	ensembl	74_37	-1	putative	silent	c.45	p.P15	0.001	NULL	pfam_G3P_DH_NAD-dep_N,superfamily_6-PGluconate_DH_C-like,tigrfam_Pyrroline-COOH_reductase	-	no_errors	PYCR1	HGNC	ENSG00000183010	tier1	-	-	25	0	0.00	21	12	36.36
SNHG7	0	genome.wustl.edu	37	9	139620999	139621003	+	RNA	DEL	TGACC	TGACC	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	TGACC	TGACC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	9	139620999	139621003	TGACC	-	DEL	SNHG7	ENST00000447221	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001:0.001:0.000:0.000:0.000	-	-	-	no_errors	SNHG7	HGNC	ENSG00000233016	tier1			NA	NA	NA	NA	NA	NA
YAF2	0	genome.wustl.edu	37	12	42629563	42629563	+	RNA	DEL	A	A	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	12	42629563	42629563	A	-	DEL	YAF2	ENST00000541702	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	YAF2	HGNC	ENSG00000015153	tier1			19	0	0.00	22	3	12.00
SPEG	0	genome.wustl.edu	37	2	220330658	220330661	+	RNA	DEL	TGCA	TGCA	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	TGCA	TGCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	2	220330658	220330661	TGCA	-	DEL	SPEG	ENST00000462545	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004:0.005:0.000:0.000	-	-	-	no_errors	SPEG	HGNC	ENSG00000072195	tier1			12	0	0.00	15	7	31.82
HM13	0	genome.wustl.edu	37	20	30142485	30142485	+	RNA	DEL	A	A	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	20	30142485	30142485	A	-	DEL	HM13	ENST00000474466	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.172	-	-	-	no_errors	HM13	HGNC	ENSG00000101294	tier1			13	0	0.00	17	5	22.73
FBXO5	0	genome.wustl.edu	37	6	153292351	153292351	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	6	153292351	153292351	T	C	SNP	FBXO5	ENST00000229758	human	ensembl	74_37	-1	known	missense	c.1291	p.I431V	0.304	NULL	pfam_F-box_dom,superfamily_F-box_dom	-	no_errors	FBXO5	HGNC	ENSG00000112029	tier1	-	-	83	0	0.00	317	33	9.43
PEG3	0	genome.wustl.edu	37	19	57336013	57336013	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	19	57336013	57336013	G	A	SNP	PEG3	ENST00000326441	human	ensembl	74_37	-1	known	missense	c.11	p.P4L	0.932	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	PEG3	HGNC	ENSG00000198300	tier1	-	-	36	0	0.00	43	12	21.82
TMC1	0	genome.wustl.edu	37	9	75451137	75451137	+	RNA	DEL	T	T	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	9	75451137	75451137	T	-	DEL	TMC1	ENST00000486417	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TMC1	HGNC	ENSG00000165091	tier1			14	0	0.00	9	3	25.00
PTCHD2	0	genome.wustl.edu	37	1	11595642	11595642	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	11595642	11595642	G	A	SNP	PTCHD2	ENST00000294484	human	ensembl	74_37	+1	known	missense	c.3757	p.V1253I	1.000	pfam_Patched,pfam_MMPL_dom	pfam_Patched,pfam_MMPL_dom,pfscan_SSD	-	no_errors	PTCHD2	HGNC	ENSG00000204624	tier1	rs200620988	-	87	0	0.00	57	31	35.23
TTC40	0	genome.wustl.edu	37	10	134660723	134660723	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	134660723	134660723	C	T	SNP	TTC40	ENST00000263170	human	ensembl	74_37	-1	known	missense	c.538	p.E180K	0.003	NULL	NULL	-	no_errors	TTC40	HGNC	ENSG00000171811	tier1	-	-	46	0	0.00	52	24	31.58
SDR39U1	0	genome.wustl.edu	37	14	24911572	24911572	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	14	24911572	24911572	C	T	SNP	SDR39U1	ENST00000399395	human	ensembl	74_37	-1	known	missense	c.103	p.G35R	0.697	pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	pfam_DUF1731_C,pfam_Epimerase_deHydtase,tigrfam_Sugar_nucleotide_Epase_put	-	no_errors	SDR39U1	HGNC	ENSG00000100445	tier1	-	-	74	0	0.00	73	29	28.43
DEAF1	0	genome.wustl.edu	37	11	680002	680003	+	RNA	INS	-	-	ACCAGGATG			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	11	680002	680003	-	ACCAGGATG	INS	DEAF1	ENST00000525904	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DEAF1	HGNC	ENSG00000177030	tier1			NA	NA	NA	NA	NA	NA
PRKCB	0	genome.wustl.edu	37	16	24192129	24192129	+	Silent	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	16	24192129	24192129	C	T	SNP	PRKCB	ENST00000303531	human	ensembl	74_37	+1	known	silent	c.1413	p.N471	0.577	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Protein_kinase_C_a/b/g,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_C2_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_C2_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Protein_kinase_C_a/b/g,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom,prints_DAG/PE-bd,prints_C2_dom	-	no_errors	PRKCB	HGNC	ENSG00000166501	tier1	-	-	56	0	0.00	67	30	30.93
FHDC1	0	genome.wustl.edu	37	4	153897251	153897251	+	Silent	SNP	T	T	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	4	153897251	153897251	T	C	SNP	FHDC1	ENST00000260008	human	ensembl	74_37	+1	known	silent	c.2808	p.D936	0.000	NULL	pfam_FH2_Formin,smart_FH2_Formin	-	no_errors	FHDC1	HGNC	ENSG00000137460	tier1	-	-	52	0	0.00	19	7	26.92
ATF6B	0	genome.wustl.edu	37	6	32093828	32093829	+	RNA	DEL	AC	AC	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	6	32093828	32093829	AC	-	DEL	ATF6B	ENST00000468502	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ATF6B	HGNC	ENSG00000213676	tier1			36	0	0.00	35	4	10.26
MPO	0	genome.wustl.edu	37	17	56348017	56348017	+	Nonstop_Mutation	SNP	C	C	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	17	56348017	56348017	C	A	SNP	MPO	ENST00000340482	human	ensembl	74_37	-1	known	nonstop	c.2334	p.*778Y	0.724	NULL	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	MPO	HGNC	ENSG00000005381	tier1	-	-	26	0	0.00	22	13	37.14
DNAH9	0	genome.wustl.edu	37	17	11725755	11725755	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	17	11725755	11725755	G	T	SNP	DNAH9	ENST00000262442	human	ensembl	74_37	+1	known	missense	c.8851	p.V2951L	1.000	superfamily_P-loop_NTPase	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	tier1	-	-	39	0	0.00	36	22	37.93
KDM2A	0	genome.wustl.edu	37	11	67023822	67023823	+	RNA	INS	-	-	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	11	67023822	67023823	-	A	INS	KDM2A	ENST00000524657	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	KDM2A	HGNC	ENSG00000173120	tier1			22	0	0.00	29	6	17.14
GPRASP2	0	genome.wustl.edu	37	X	101970023	101970023	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	X	101970023	101970023	A	T	SNP	GPRASP2	ENST00000332262	human	ensembl	74_37	+1	known	missense	c.226	p.T76S	0.894	NULL	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	-	no_errors	GPRASP2	HGNC	ENSG00000158301	tier1	-	-	12	0	0.00	8	19	70.37
FOXS1	0	genome.wustl.edu	37	20	30432800	30432800	+	Silent	SNP	A	A	G			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	20	30432800	30432800	A	G	SNP	FOXS1	ENST00000375978	human	ensembl	74_37	-1	known	silent	c.546	p.T182	0.527	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXS1	HGNC	ENSG00000179772	tier1	-	-	51	0	0.00	45	15	25.00
DUSP27	0	genome.wustl.edu	37	1	167097263	167097263	+	Silent	SNP	G	G	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	167097263	167097263	G	T	SNP	DUSP27	ENST00000271385	human	ensembl	74_37	+1	known	silent	c.2895	p.S965	0.003	NULL	pfam_Dual-sp_phosphatase_cat-dom,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP27	HGNC	ENSG00000198842	tier1	-	-	45	0	0.00	50	24	32.43
THBS3	0	genome.wustl.edu	37	1	155176138	155176138	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	155176138	155176138	G	A	SNP	THBS3	ENST00000368378	human	ensembl	74_37	-1	known	missense	c.139	p.R47W	1.000	smart_Laminin_G	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom	-	no_errors	THBS3	HGNC	ENSG00000169231	tier1	-	-	25	0	0.00	25	17	40.48
ENSG00000225411	0	genome.wustl.edu	37	9	68400475	68400475	+	RNA	SNP	T	T	G			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	9	68400475	68400475	T	G	SNP	ENSG00000225411	ENST00000417843	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors	RP11-764K9.1	Clone_based_vega_gene	ENSG00000225411	tier1	rs75317582	-	19	0	0.00	10	12	54.55
MESP1	0	genome.wustl.edu	37	15	90294296	90294297	+	In_Frame_Ins	INS	-	-	CGGGGCTCGGCA			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	15	90294296	90294297	-	CGGGGCTCGGCA	INS	MESP1	ENST00000300057	human	ensembl	74_37	-1	known	in_frame_ins	c.167_166	p.56in_frame_insVPSP	0.000:0.000	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	MESP1	HGNC	ENSG00000166823	tier1			NA	NA	NA	NA	NA	NA
GRIN2A	0	genome.wustl.edu	37	16	10273944	10273944	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	16	10273944	10273944	C	T	SNP	GRIN2A	ENST00000330684	human	ensembl	74_37	-1	known	missense	c.325	p.V109I	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2A	HGNC	ENSG00000183454	tier1	-	-	49	0	0.00	55	29	34.52
SELP	0	genome.wustl.edu	37	1	169586354	169586354	+	Silent	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	1	169586354	169586354	G	A	SNP	SELP	ENST00000263686	human	ensembl	74_37	-1	known	silent	c.393	p.C131	0.801	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Sushi_SCR_CCP,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Sushi_SCR_CCP,prints_Selectin_superfamily	-	no_errors	SELP	HGNC	ENSG00000174175	tier1	-	-	76	0	0.00	70	33	32.04
GRAMD3	0	genome.wustl.edu	37	5	125824561	125824561	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	5	125824561	125824561	G	T	SNP	GRAMD3	ENST00000542322	human	ensembl	74_37	+1	known	missense	c.1258	p.A420S	0.977	NULL	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD3	HGNC	ENSG00000155324	tier1	-	-	34	0	0.00	32	4	11.11
CTBP2	0	genome.wustl.edu	37	10	126715438	126715438	+	Silent	SNP	C	C	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	126715438	126715438	C	A	SNP	CTBP2	ENST00000309035	human	ensembl	74_37	-1	known	silent	c.891	p.L297	1.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	tier1	-	-	19	0	0.00	8	7	46.67
ENSG00000272231	0	genome.wustl.edu	37	12	74293705	74293712	+	RNA	DEL	CACACACA	CACACACA	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	CACACACA	CACACACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	12	74293705	74293712	CACACACA	-	DEL	ENSG00000272231	ENST00000606199	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.029:0.033:0.036:0.039:0.041:0.043:0.044:0.045	-	-	-	no_errors	AC136188.1	Clone_based_ensembl_gene	ENSG00000272231	tier1			NA	NA	NA	NA	NA	NA
NPTN	0	genome.wustl.edu	37	15	73858110	73858110	+	Splice_Site	DEL	C	C	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	15	73858110	73858110	C	-	DEL	NPTN	ENST00000545878	human	ensembl	74_37	-1	known	splice_site_del	c.1122+1	e7+1	0.000	-	-	-	no_errors	NPTN	HGNC	ENSG00000156642	tier1			48	0	0.00	45	25	35.71
DYNC2H1	0	genome.wustl.edu	37	11	103128353	103128353	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	11	103128353	103128353	T	C	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	missense	c.10499	p.L3500P	1.000	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	tier1	-	-	73	0	0.00	43	4	8.51
NPIPB6	0	genome.wustl.edu	37	16	28354457	28354457	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	16	28354457	28354457	G	A	SNP	NPIPB6	ENST00000532254	human	ensembl	74_37	-1	novel	missense	c.749	p.P250L	0.047	NULL	NULL	-	no_errors	NPIPB6	HGNC	ENSG00000198156	tier1	rs201118010	-	18	0	0.00	27	6	18.18
HHLA1	0	genome.wustl.edu	37	8	133090154	133090154	+	Silent	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	8	133090154	133090154	C	T	SNP	HHLA1	ENST00000414222	human	ensembl	74_37	-1	known	silent	c.990	p.S330	0.000	NULL	NULL	-	no_errors	HHLA1	HGNC	ENSG00000132297	tier1	-	-	42	0	0.00	27	14	34.15
NOTCH4	0	genome.wustl.edu	37	6	32191659	32191661	+	In_Frame_Del	DEL	AGC	AGC	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	AGC	AGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	6	32191659	32191661	AGC	-	DEL	NOTCH4	ENST00000375023	human	ensembl	74_37	-1	known	in_frame_del	c.47_45	p.L16in_frame_del	0.003:0.005:0.005	pirsf_Notch	pirsf_Notch,pfam_EG-like_dom,pfam_Ankyrin_rpt,pfam_EGF-like_Ca-bd_dom,pfam_Notch_dom,pfam_Notch_NODP_dom,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_4,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH4	HGNC	ENSG00000204301	tier1			9	0	0.00	15	11	42.31
UGT3A1	0	genome.wustl.edu	37	5	35991364	35991364	+	RNA	SNP	G	G	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	5	35991364	35991364	G	T	SNP	UGT3A1	ENST00000513233	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	UGT3A1	HGNC	ENSG00000145626	tier1	-	-	34	0	0.00	57	6	9.52
SRRM4	0	genome.wustl.edu	37	12	119594485	119594485	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	12	119594485	119594485	G	A	SNP	SRRM4	ENST00000267260	human	ensembl	74_37	+1	known	missense	c.1718	p.R573H	1.000	NULL	NULL	-	no_errors	SRRM4	HGNC	ENSG00000139767	tier1	-	-	15	0	0.00	20	17	45.95
KIAA1432	0	genome.wustl.edu	37	9	5774107	5774107	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	9	5774107	5774107	G	-	DEL	KIAA1432	ENST00000418622	human	ensembl	74_37	+1	known	frame_shift_del	c.3896	p.G1300fs	1.000	NULL	pfam_Ribosome_control_1,superfamily_WD40_repeat_dom	-	no_errors	KIAA1432	HGNC	ENSG00000107036	tier1			56	0	0.00	39	31	44.29
KIAA1456	0	genome.wustl.edu	37	8	12879396	12879396	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	8	12879396	12879396	T	C	SNP	KIAA1456	ENST00000524591	human	ensembl	74_37	+1	known	missense	c.1208	p.L403S	0.001	NULL	pfam_Methyltransf_11,pfam_Methyltransf_12,pfam_UbiE/COQ5_MeTrFase,pfam_Methyltransferase-rel	-	no_errors	KIAA1456	HGNC	ENSG00000250305	tier1	-	-	20	0	0.00	21	13	38.24
OR5J2	0	genome.wustl.edu	37	11	55944659	55944659	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	11	55944659	55944659	G	A	SNP	OR5J2	ENST00000312298	human	ensembl	74_37	+1	known	missense	c.566	p.C189Y	0.993	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	-	no_errors	OR5J2	HGNC	ENSG00000174957	tier1	-	-	51	0	0.00	32	21	39.62
TMEM178B	0	genome.wustl.edu	37	7	141170396	141170396	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	7	141170396	141170396	G	A	SNP	TMEM178B	ENST00000565468	human	ensembl	74_37	+1	putative	missense	c.695	p.R232H	1.000	NULL	NULL	-	no_errors	TMEM178B	HGNC	ENSG00000261115	tier1	-	-	28	0	0.00	50	13	20.63
FRG2B	0	genome.wustl.edu	37	10	135439803	135439803	+	Silent	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	10	135439803	135439803	C	T	SNP	FRG2B	ENST00000425520	human	ensembl	74_37	-1	known	silent	c.183	p.S61	0.213	NULL	NULL	-	no_errors	FRG2B	HGNC	ENSG00000225899	tier1	rs202189720	-	8	0	0.00	8	6	42.86
MROH2B	0	genome.wustl.edu	37	5	41015559	41015559	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	5	41015559	41015559	C	T	SNP	MROH2B	ENST00000399564	human	ensembl	74_37	-1	known	missense	c.2906	p.R969K	0.817	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MROH2B	HGNC	ENSG00000171495	tier1	-	-	59	0	0.00	48	27	36.00
KRT3	0	genome.wustl.edu	37	12	53189521	53189525	+	Frame_Shift_Del	DEL	TCCAT	TCCAT	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	TCCAT	TCCAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	12	53189521	53189525	TCCAT	-	DEL	KRT3	ENST00000309505	human	ensembl	74_37	-1	known	frame_shift_del	c.306_302	p.Y101fs	0.969:0.972:0.924:0.546:0.186	NULL	pfam_IF,superfamily_Prefoldin,prints_Keratin_II,prints_Keratin_I	-	no_errors	KRT3	HGNC	ENSG00000186442	tier1			NA	NA	NA	NA	NA	NA
ZNF280A	0	genome.wustl.edu	37	22	22869108	22869108	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	22	22869108	22869108	G	C	SNP	ZNF280A	ENST00000302097	human	ensembl	74_37	-1	known	missense	c.847	p.Q283E	0.262	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280A	HGNC	ENSG00000169548	tier1	-	-	91	0	0.00	60	18	23.08
OR7A5	0	genome.wustl.edu	37	19	14938248	14938248	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	19	14938248	14938248	T	A	SNP	OR7A5	ENST00000322301	human	ensembl	74_37	-1	known	missense	c.806	p.H269L	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR7A5	HGNC	ENSG00000188269	tier1	rs112284734	-	75	0	0.00	91	9	9.00
GRID2	0	genome.wustl.edu	37	4	93225753	93225753	+	RNA	DEL	A	A	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	4	93225753	93225753	A	-	DEL	GRID2	ENST00000505687	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208	tier1			37	0	0.00	55	10	15.38
ACSBG1	0	genome.wustl.edu	37	15	78500436	78500436	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	15	78500436	78500436	G	A	SNP	ACSBG1	ENST00000258873	human	ensembl	74_37	-1	known	missense	c.140	p.T47I	0.002	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSBG1	HGNC	ENSG00000103740	tier1	-	-	33	0	0.00	20	14	41.18
LOC100996870	0	genome.wustl.edu	37	9	66466226	66466226	+	RNA	SNP	A	A	G			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	9	66466226	66466226	A	G	SNP	LOC100996870	ENST00000424345	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-262H14.1	Clone_based_vega_gene	ENSG00000238113	tier1	-	-	8	0	0.00	8	4	33.33
SP100	0	genome.wustl.edu	37	2	231334504	231334508	+	Frame_Shift_Del	DEL	AAAAG	AAAAG	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	AAAAG	AAAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	2	231334504	231334508	AAAAG	-	DEL	SP100	ENST00000341950	human	ensembl	74_37	+1	known	frame_shift_del	c.1358_1362	p.K454fs	0.004:0.006:0.006:0.010:0.013	NULL	pfam_Sp100	-	no_errors	SP100	HGNC	ENSG00000067066	tier1			NA	NA	NA	NA	NA	NA
HECTD4	0	genome.wustl.edu	37	12	112622883	112622885	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	12	112622883	112622885	GAG	-	DEL	HECTD4	ENST00000377560	human	ensembl	74_37	-1	known	in_frame_del	c.9371_9369	p.S3126in_frame_del	0.996:0.995:0.314	NULL	pfam_HECT,superfamily_HECT,superfamily_ConA-like_lec_gl_sf,smart_HECT,pfscan_HECT	-	no_errors	HECTD4	HGNC	ENSG00000173064	tier1			39	0	0.00	51	5	8.93
EPG5	0	genome.wustl.edu	37	18	43432446	43432446	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	18	43432446	43432446	C	G	SNP	EPG5	ENST00000282041	human	ensembl	74_37	-1	known	missense	c.7726	p.D2576H	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223	tier1	-	-	68	0	0.00	158	49	23.56
GALNT16	0	genome.wustl.edu	37	14	69791508	69791508	+	Splice_Site	SNP	G	G	T			TCGA-DX-AB2G-01A-11D-A38Z-09	TCGA-DX-AB2G-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	9b779d1d-4305-4534-bbce-2ed53f2269c0	b525edfb-1ff0-4bbb-8c86-4c4f1f38d5d4	14	69791508	69791508	G	T	SNP	GALNT16	ENST00000337827	human	ensembl	74_37	+1	known	splice_site	c.434+1	e3+1	1.000	-	-	-	no_errors	GALNT16	HGNC	ENSG00000100626	tier1	-	-	25	0	0.00	31	4	11.43
