Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TTN	0	genome.wustl.edu	37	2	179427807	179427807	+	Silent	SNP	C	C	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	2	179427807	179427807	C	T	SNP	TTN	ENST00000342992	human	ensembl	74_37	-1	known	silent	c.75348	p.V25116	0.295	pfam_Ig_I-set,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom	-	no_errors	TTN	HGNC	ENSG00000155657	tier1	-	-	57	0	0.00	20	34	62.96
CALCR	0	genome.wustl.edu	37	7	93055785	93055785	+	Silent	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	7	93055785	93055785	G	A	SNP	CALCR	ENST00000359558	human	ensembl	74_37	-1	known	silent	c.1410	p.G470	0.000	prints_GPCR_2_calcitonin_rcpt	pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GCPR_2_calcitonin_rcpt_fam,prints_GPCR_2_secretin-like,prints_GPCR_2_calcitonin_rcpt	-	no_errors	CALCR	HGNC	ENSG00000004948	tier1	-	-	35	0	0.00	25	23	47.92
SORCS2	0	genome.wustl.edu	37	4	7640055	7640055	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	4	7640055	7640055	G	T	SNP	SORCS2	ENST00000507866	human	ensembl	74_37	+1	known	missense	c.649	p.V217F	1.000	smart_VPS10	pfam_PKD_dom,superfamily_PKD_dom,smart_VPS10,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	SORCS2	HGNC	ENSG00000184985	tier1	-	-	48	0	0.00	45	4	8.16
ESYT1	0	genome.wustl.edu	37	12	56522182	56522182	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	12	56522182	56522182	C	-	DEL	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	frame_shift_del	c.79	p.A29fs	0.130	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641	tier1			80	0	0.00	42	27	39.13
ASXL2	0	genome.wustl.edu	37	2	25966165	25966165	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	2	25966165	25966165	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	74_37	-1	known	missense	c.3041	p.P1014L	0.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	tier1	-	-	71	0	0.00	36	35	49.30
GAB4	0	genome.wustl.edu	37	22	17447244	17447244	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	22	17447244	17447244	G	A	SNP	GAB4	ENST00000400588	human	ensembl	74_37	-1	known	missense	c.1034	p.T345M	0.233	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	GAB4	HGNC	ENSG00000215568	tier1	-	-	39	0	0.00	0	11	100.00
FNIP2	0	genome.wustl.edu	37	4	159790439	159790439	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	4	159790439	159790439	A	-	DEL	FNIP2	ENST00000379346	human	ensembl	74_37	+1	known	frame_shift_del	c.2720	p.G908fs	1.000	NULL	NULL	-	no_errors	FNIP2	HGNC	ENSG00000052795	tier1			48	0	0.00	23	2	8.00
TPTE2P1	0	genome.wustl.edu	37	13	25542555	25542559	+	RNA	DEL	CCCCT	CCCCT	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	CCCCT	CCCCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	13	25542555	25542559	CCCCT	-	DEL	TPTE2P1	ENST00000381871	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	TPTE2P1	HGNC	ENSG00000253771	tier1			NA	NA	NA	NA	NA	NA
ACVR1	0	genome.wustl.edu	37	2	158634770	158634770	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	2	158634770	158634770	G	T	SNP	ACVR1	ENST00000263640	human	ensembl	74_37	-1	known	missense	c.416	p.A139D	0.980	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_TGFB_receptor,pfscan_Prot_kinase_dom	-	no_errors	ACVR1	HGNC	ENSG00000115170	tier1	-	-	57	0	0.00	40	4	9.09
DCLRE1A	0	genome.wustl.edu	37	10	115608781	115608796	+	Frame_Shift_Del	DEL	CTCCTACATTAGATGA	CTCCTACATTAGATGA	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	CTCCTACATTAGATGA	CTCCTACATTAGATGA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	10	115608781	115608796	CTCCTACATTAGATGA	-	DEL	DCLRE1A	ENST00000361384	human	ensembl	74_37	-1	known	frame_shift_del	c.2083_2068	p.S690fs	0.633:0.630:0.691:0.807:0.800:0.633:0.529:0.443:0.034:0.005:0.003:0.001:0.000:0.006:0.095:0.131	NULL	pfam_DRMBL	-	no_errors	DCLRE1A	HGNC	ENSG00000198924	tier1			NA	NA	NA	NA	NA	NA
LYNX1	0	genome.wustl.edu	37	8	143846466	143846466	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	8	143846466	143846466	T	-	DEL	LYNX1	ENST00000335822	human	ensembl	74_37	-1	known	frame_shift_del	c.247	p.T83fs	0.000	pfam_LY6_UPAR	pfam_LY6_UPAR	-	no_errors	LYNX1	HGNC	ENSG00000180155	tier1			49	0	0.00	19	2	9.52
KCNT1	0	genome.wustl.edu	37	9	138662218	138662218	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	9	138662218	138662218	G	A	SNP	KCNT1	ENST00000298480	human	ensembl	74_37	+1	known	missense	c.1694	p.R565H	1.000	pfam_K_chnl_Ca-activ_BK_asu	pfam_K_chnl_Ca-activ_BK_asu,pfam_2pore_dom_K_chnl_dom	-	no_errors	KCNT1	HGNC	ENSG00000107147	tier1	-	-	53	0	0.00	40	4	9.09
MSH3	0	genome.wustl.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	CCCCCAGCT	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	CCCCCAGCT	CCCCCAGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	5	79950742	79950750	CCCCCAGCT	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	in_frame_del	c.196_204	p.PAP67in_frame_del	0.890:0.802:0.715:0.628:0.541:0.455:0.369:0.282:0.196	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1			NA	NA	NA	NA	NA	NA
ZNF592	0	genome.wustl.edu	37	15	85327731	85327731	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	15	85327731	85327731	C	T	SNP	ZNF592	ENST00000299927	human	ensembl	74_37	+1	known	missense	c.1825	p.R609W	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF592	HGNC	ENSG00000166716	tier1	-	-	20	0	0.00	11	9	45.00
TOR4A	0	genome.wustl.edu	37	9	140174330	140174330	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	9	140174330	140174330	C	T	SNP	TOR4A	ENST00000357503	human	ensembl	74_37	+1	known	nonsense	c.1189	p.Q397*	0.994	NULL	pfam_Torsin,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	TOR4A	HGNC	ENSG00000198113	tier1	-	-	17	0	0.00	11	4	26.67
SLC35A5	0	genome.wustl.edu	37	3	112300122	112300122	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	3	112300122	112300122	G	A	SNP	SLC35A5	ENST00000261034	human	ensembl	74_37	+1	known	missense	c.686	p.G229D	0.792	NULL	pfam_Nuc_sug_transpt,pfam_DMT,pfam_UAA,pfam_Tpt_PEP_trans_dom	-	no_errors	SLC35A5	HGNC	ENSG00000138459	tier1	-	-	48	0	0.00	27	20	42.55
VPS13A	0	genome.wustl.edu	37	9	79891096	79891096	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	9	79891096	79891096	C	A	SNP	VPS13A	ENST00000360280	human	ensembl	74_37	+1	known	missense	c.2783	p.A928D	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13A	HGNC	ENSG00000197969	tier1	-	-	193	0	0.00	108	87	44.62
DUSP13	0	genome.wustl.edu	37	10	76865463	76865463	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	10	76865463	76865463	C	T	SNP	DUSP13	ENST00000491677	human	ensembl	74_37	-1	known	missense	c.43	p.A15T	0.998	NULL	pfam_Dual-sp_phosphatase_cat-dom,pfam_Tyr_Pase_rcpt/non-rcpt,smart_Dual-sp_phosphatase_subgr_cat,pfscan_Tyr/Dual-sp_Pase,pfscan_Dual-sp_phosphatase_subgr_cat,prints_Atypical_DUSP,prints_Atypical_DUSP_famA	-	no_errors	DUSP13	HGNC	ENSG00000079393	tier1	-	-	48	0	0.00	20	19	48.72
CNGA3	0	genome.wustl.edu	37	2	99012444	99012444	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	2	99012444	99012444	C	A	SNP	CNGA3	ENST00000272602	human	ensembl	74_37	+1	known	missense	c.811	p.P271T	1.000	pfam_Ion_trans_dom	pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom	-	no_errors	CNGA3	HGNC	ENSG00000144191	tier1	-	-	55	0	0.00	29	27	48.21
DDI1	0	genome.wustl.edu	37	11	103908420	103908420	+	Silent	SNP	T	T	C			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	11	103908420	103908420	T	C	SNP	DDI1	ENST00000302259	human	ensembl	74_37	+1	known	silent	c.870	p.A290	0.928	pfam_Peptidase_aspartic_DDI1-type,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom	pfam_Peptidase_aspartic_DDI1-type,pfam_Ubiquitin_dom,pfam_RVP_2,pfam_Pept_A2A_retrovirus_sg,superfamily_Peptidase_aspartic_dom,smart_Ubiquitin_dom,pfscan_Ubiquitin_supergroup	-	no_errors	DDI1	HGNC	ENSG00000170967	tier1	-	-	22	0	0.00	16	11	40.74
KIF21A	0	genome.wustl.edu	37	12	39727019	39727019	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	12	39727019	39727019	C	T	SNP	KIF21A	ENST00000395670	human	ensembl	74_37	-1	known	missense	c.2482	p.E828K	1.000	NULL	pfam_Kinesin_motor_dom,pfam_WD40_repeat,superfamily_P-loop_NTPase,superfamily_WD40_repeat_dom,superfamily_Prefoldin,superfamily_ARM-type_fold,smart_Kinesin_motor_dom,smart_WD40_repeat,pfscan_Kinesin_motor_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Kinesin_motor_dom	-	no_errors	KIF21A	HGNC	ENSG00000139116	tier1	-	-	74	0	0.00	405	375	48.08
ITPR1	0	genome.wustl.edu	37	3	4853082	4853082	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	3	4853082	4853082	T	-	DEL	ITPR1	ENST00000302640	human	ensembl	74_37	+1	known	frame_shift_del	c.7361	p.F2455fs	0.999	pfam_Ion_trans_dom	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	tier1			92	0	0.00	59	41	41.00
ENSG00000216166	0	genome.wustl.edu	37	3	183520323	183520324	+	RNA	INS	-	-	TATATATATACACGTGTATATATATACACGTGTA			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	3	183520323	183520324	-	TATATATATACACGTGTATATATATACACGTGTA	INS	ENSG00000216166	ENST00000401347	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AC131160.1	Clone_based_ensembl_gene	ENSG00000216166	tier1			NA	NA	NA	NA	NA	NA
USP20	0	genome.wustl.edu	37	9	132637674	132637674	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	9	132637674	132637674	G	A	SNP	USP20	ENST00000315480	human	ensembl	74_37	+1	known	missense	c.2134	p.V712M	1.000	smart_Pept_C19_DUSP	pfam_Peptidase_C19/C67,pfam_Pept_C19_DUSP,pfam_Znf_UBP,smart_Znf_UBP,smart_Pept_C19_DUSP,pfscan_Znf_UBP,pfscan_Peptidase_C19/C67	-	no_errors	USP20	HGNC	ENSG00000136878	tier1	-	-	69	0	0.00	22	22	50.00
MAGEC3	0	genome.wustl.edu	37	X	140983153	140983153	+	Silent	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	X	140983153	140983153	G	A	SNP	MAGEC3	ENST00000298296	human	ensembl	74_37	+1	known	silent	c.1008	p.R336	0.006	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC3	HGNC	ENSG00000165509	tier1	-	-	84	0	0.00	32	35	52.24
NAPA	0	genome.wustl.edu	37	19	48003950	48003950	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	19	48003950	48003950	G	T	SNP	NAPA	ENST00000263354	human	ensembl	74_37	-1	known	missense	c.235	p.H79N	1.000	NULL	prints_NSF_attach	-	no_errors	NAPA	HGNC	ENSG00000105402	tier1	-	-	33	0	0.00	33	4	10.81
ENPP5	0	genome.wustl.edu	37	6	46135503	46135503	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	6	46135503	46135503	C	G	SNP	ENPP5	ENST00000230565	human	ensembl	74_37	-1	known	missense	c.497	p.R166T	1.000	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	pfam_Phosphodiest/P_Trfase,superfamily_Alkaline_phosphatase_core	-	no_errors	ENPP5	HGNC	ENSG00000112796	tier1	-	-	32	0	0.00	21	13	38.24
PXN	0	genome.wustl.edu	37	12	120653747	120653747	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	12	120653747	120653747	G	-	DEL	PXN	ENST00000397506	human	ensembl	74_37	-1	known	frame_shift_del	c.109	p.Q37fs	0.000	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PXN	HGNC	ENSG00000089159	tier1			48	0	0.00	20	3	13.04
PGS1	0	genome.wustl.edu	37	17	76374748	76374749	+	In_Frame_Ins	INS	-	-	GGCGGTGGC			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	17	76374748	76374749	-	GGCGGTGGC	INS	PGS1	ENST00000262764	human	ensembl	74_37	+1	known	in_frame_ins	c.2_3	p.5in_frame_insAVA	1.000:1.000	NULL	pirsf_PLipase-D_PtdSer-synthase-type,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PGS1	HGNC	ENSG00000087157	tier1			NA	NA	NA	NA	NA	NA
HPGD	0	genome.wustl.edu	37	4	175429244	175429244	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	4	175429244	175429244	G	A	SNP	HPGD	ENST00000504433	human	ensembl	74_37	-1	putative	missense	c.512	p.A171V	0.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_ADH_insect,prints_DH_sc/Rdtase_SDR	-	no_errors	HPGD	HGNC	ENSG00000164120	tier1	-	-	124	0	0.00	5	49	90.74
C6	0	genome.wustl.edu	37	5	41195968	41195968	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	5	41195968	41195968	C	G	SNP	C6	ENST00000263413	human	ensembl	74_37	-1	known	missense	c.513	p.R171S	0.622	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_Thrombospondin_1_rpt,pfam_LDrepeatLR_classA_rpt,pfam_Kazal_dom,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,prints_MAC_perforin,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt	-	no_errors	C6	HGNC	ENSG00000039537	tier1	-	-	78	0	0.00	41	36	46.75
COL5A3	0	genome.wustl.edu	37	19	10089586	10089586	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	19	10089586	10089586	T	C	SNP	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	missense	c.2945	p.K982R	0.906	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	tier1	-	-	83	0	0.00	45	45	50.00
TTC17	0	genome.wustl.edu	37	11	43513714	43513714	+	Splice_Site	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	11	43513714	43513714	G	T	SNP	TTC17	ENST00000039989	human	ensembl	74_37	+1	known	splice_site	c.3294+1	e23+1	1.000	-	-	-	no_errors	TTC17	HGNC	ENSG00000052841	tier1	-	-	32	0	0.00	18	3	14.29
LRRC8B	0	genome.wustl.edu	37	1	90050305	90050305	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	1	90050305	90050305	A	C	SNP	LRRC8B	ENST00000330947	human	ensembl	74_37	+1	known	missense	c.2096	p.Q699P	1.000	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	pfam_LRR_protein-8_N,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC8B	HGNC	ENSG00000197147	tier1	-	-	13	0	0.00	15	6	28.57
NTM	0	genome.wustl.edu	37	11	132205623	132205624	+	RNA	INS	-	-	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	11	132205623	132205624	-	T	INS	NTM	ENST00000474900	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	NTM	HGNC	ENSG00000182667	tier1			35	0	0.00	39	4	9.30
XKR8	0	genome.wustl.edu	37	1	28293381	28293381	+	Silent	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	1	28293381	28293381	C	A	SNP	XKR8	ENST00000373884	human	ensembl	74_37	+1	known	silent	c.858	p.I286	0.999	pfam_Transport_prot_XK	pfam_Transport_prot_XK	-	no_errors	XKR8	HGNC	ENSG00000158156	tier1	-	-	55	0	0.00	24	28	53.85
NUTM2B	0	genome.wustl.edu	37	10	81471859	81471859	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	10	81471859	81471859	C	A	SNP	NUTM2B	ENST00000429828	human	ensembl	74_37	+1	known	nonsense	c.2255	p.S752*	0.006	NULL	NULL	-	no_errors	NUTM2B	HGNC	ENSG00000188199	tier1	-	-	142	0	0.00	112	22	16.42
HR	0	genome.wustl.edu	37	8	21977962	21977965	+	Frame_Shift_Del	DEL	GCTT	GCTT	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	GCTT	GCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	8	21977962	21977965	GCTT	-	DEL	HR	ENST00000381418	human	ensembl	74_37	-1	known	frame_shift_del	c.2669_2666	p.E889fs	0.757:0.809:0.811:0.884	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453	tier1			38	0	0.00	18	12	40.00
MUC16	0	genome.wustl.edu	37	19	9064310	9064310	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	19	9064310	9064310	G	-	DEL	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	frame_shift_del	c.23136	p.S7713fs	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1			26	0	0.00	20	2	9.09
ZBTB7A	0	genome.wustl.edu	37	19	4048115	4048115	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	19	4048115	4048115	G	A	SNP	ZBTB7A	ENST00000322357	human	ensembl	74_37	-1	known	missense	c.1390	p.R464C	1.000	pfscan_Znf_C2H2	pfam_BTB_POZ,pfam_Znf_C2H2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB7A	HGNC	ENSG00000178951	tier1	-	-	70	0	0.00	29	27	48.21
DDB2	0	genome.wustl.edu	37	11	47236754	47236754	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	11	47236754	47236754	A	G	SNP	DDB2	ENST00000256996	human	ensembl	74_37	+1	known	missense	c.67	p.R23G	0.979	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DDB2	HGNC	ENSG00000134574	tier1	-	-	54	0	0.00	29	26	47.27
DDHD1	0	genome.wustl.edu	37	14	53619480	53619481	+	In_Frame_Ins	INS	-	-	GCCGCC			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	14	53619480	53619481	-	GCCGCC	INS	DDHD1	ENST00000323669	human	ensembl	74_37	-1	known	in_frame_ins	c.337_336	p.112in_frame_insGG	0.234:0.997	NULL	pfam_DDHD,pfscan_DDHD	-	no_errors	DDHD1	HGNC	ENSG00000100523	tier1			NA	NA	NA	NA	NA	NA
PRPF3	0	genome.wustl.edu	37	1	150315720	150315728	+	RNA	DEL	AAAAAATAT	AAAAAATAT	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	AAAAAATAT	AAAAAATAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	1	150315720	150315728	AAAAAATAT	-	DEL	PRPF3	ENST00000493553	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001:0.001:0.000:0.001:0.000:0.001:0.001:0.002:0.004	-	-	-	no_errors	PRPF3	HGNC	ENSG00000117360	tier1			NA	NA	NA	NA	NA	NA
TMEM127	0	genome.wustl.edu	37	2	96919781	96919783	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	2	96919781	96919783	TGC	-	DEL	TMEM127	ENST00000258439	human	ensembl	74_37	-1	known	in_frame_del	c.482_480	p.Q160in_frame_del	1.000:1.000:0.977	NULL	NULL	-	no_errors	TMEM127	HGNC	ENSG00000135956	tier1			38	0	0.00	37	4	9.76
SCNN1G	0	genome.wustl.edu	37	16	23200982	23200982	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	16	23200982	23200982	G	T	SNP	SCNN1G	ENST00000300061	human	ensembl	74_37	+1	known	missense	c.608	p.G203V	1.000	pfam_Na+channel_ASC,tigrfam_EnaC	pfam_Na+channel_ASC,prints_Na+channel_ASC,tigrfam_EnaC	-	no_errors	SCNN1G	HGNC	ENSG00000166828	tier1	-	-	45	0	0.00	23	21	47.73
ATXN7L1	0	genome.wustl.edu	37	7	105254802	105254804	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	7	105254802	105254804	GAG	-	DEL	ATXN7L1	ENST00000419735	human	ensembl	74_37	-1	known	in_frame_del	c.1979_1977	p.S661in_frame_del	0.098:0.098:0.097	NULL	pfam_SCA7_dom	-	no_errors	ATXN7L1	HGNC	ENSG00000146776	tier1			32	0	0.00	30	4	11.76
NUTM1	0	genome.wustl.edu	37	15	34640626	34640626	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	15	34640626	34640626	T	-	DEL	NUTM1	ENST00000333756	human	ensembl	74_37	+1	known	frame_shift_del	c.473	p.P159fs	0.018	NULL	NULL	-	no_errors	NUTM1	HGNC	ENSG00000184507	tier1			30	0	0.00	21	2	8.70
EXOSC8	0	genome.wustl.edu	37	13	37580294	37580294	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	13	37580294	37580294	A	-	DEL	EXOSC8	ENST00000389704	human	ensembl	74_37	+1	known	frame_shift_del	c.387	p.K130fs	0.870	pfam_ExoRNase_PH_dom1,superfamily_Ribosomal_S5_D2-typ_fold	pfam_ExoRNase_PH_dom1,pfam_ExoRNase_PH_dom2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ExoRNase_PH_dom2	-	no_errors	EXOSC8	HGNC	ENSG00000120699	tier1			107	0	0.00	55	39	41.49
TMEM97	0	genome.wustl.edu	37	17	26653806	26653807	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	17	26653806	26653807	-	A	INS	TMEM97	ENST00000226230	human	ensembl	74_37	+1	known	frame_shift_ins	c.518_519	p.K177fs	1.000:1.000	NULL	pfam_Transmembrane_6/97,pirsf_Transmembrane_6/97	-	no_errors	TMEM97	HGNC	ENSG00000109084	tier1			23	0	0.00	23	3	11.54
ESYT1	0	genome.wustl.edu	37	12	56522184	56522184	+	Silent	SNP	C	C	G			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	12	56522184	56522184	C	G	SNP	ESYT1	ENST00000267113	human	ensembl	74_37	+1	known	silent	c.81	p.P27	0.807	NULL	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,prints_C2_dom,pfscan_C2_dom	-	no_errors	ESYT1	HGNC	ENSG00000139641	tier1	-	-	76	0	0.00	40	27	40.30
FAM104A	0	genome.wustl.edu	37	17	71205859	71205861	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	17	71205859	71205861	TGC	-	DEL	FAM104A	ENST00000405159	human	ensembl	74_37	-1	known	in_frame_del	c.433_431	p.S144in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	FAM104A	HGNC	ENSG00000133193	tier1			42	0	0.00	14	5	26.32
CAD	0	genome.wustl.edu	37	2	27464970	27464970	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	2	27464970	27464970	C	-	DEL	CAD	ENST00000264705	human	ensembl	74_37	+1	known	frame_shift_del	c.6075	p.Q2027fs	1.000	pfam_Asp/Orn_carbamoyltranf_P-bd,superfamily_Asp/Orn_carbamoylTrfase,tigrfam_Asp_carbamoyltransf	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_dom,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf	-	no_errors	CAD	HGNC	ENSG00000084774	tier1			22	0	0.00	16	3	15.79
POU4F2	0	genome.wustl.edu	37	4	147560458	147560466	+	In_Frame_Del	DEL	GGCGGCGGC	GGCGGCGGC	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	GGCGGCGGC	GGCGGCGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	4	147560458	147560466	GGCGGCGGC	-	DEL	POU4F2	ENST00000281321	human	ensembl	74_37	+1	known	in_frame_del	c.166_174	p.GGG59in_frame_del	0.992:0.990:0.987:0.986:0.984:0.983:0.983:0.983:0.983	NULL	pfam_POU_specific,pfam_Homeobox_dom,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	tier1			NA	NA	NA	NA	NA	NA
TMEM194B	0	genome.wustl.edu	37	2	191379397	191379397	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	2	191379397	191379397	G	A	SNP	TMEM194B	ENST00000414176	human	ensembl	74_37	-1	known	missense	c.413	p.S138F	0.000	NULL	pfam_TMEM194	-	no_errors	TMEM194B	HGNC	ENSG00000189362	tier1	-	-	67	0	0.00	46	32	41.03
ENSG00000216113	0	genome.wustl.edu	37	8	104863873	104863878	+	RNA	DEL	ACACAC	ACACAC	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	ACACAC	ACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	8	104863873	104863878	ACACAC	-	DEL	ENSG00000216113	ENST00000401294	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AP001572.1	Clone_based_ensembl_gene	ENSG00000216113	tier1			NA	NA	NA	NA	NA	NA
ANKRD18B	0	genome.wustl.edu	37	9	33566231	33566231	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	9	33566231	33566231	G	A	SNP	ANKRD18B	ENST00000290943	human	ensembl	74_37	+1	known	missense	c.2289	p.M763I	0.054	NULL	pfam_DUF3496,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD18B	HGNC	ENSG00000230453	tier1	-	-	139	0	0.00	76	68	47.22
SLC4A4	0	genome.wustl.edu	37	4	72332163	72332163	+	Silent	SNP	C	C	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	4	72332163	72332163	C	T	SNP	SLC4A4	ENST00000425175	human	ensembl	74_37	+1	known	silent	c.1500	p.G500	0.754	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_Band3_cytoplasmic_dom,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	tier1	-	-	79	0	0.00	41	23	35.94
COL4A3	0	genome.wustl.edu	37	2	228122337	228122337	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	2	228122337	228122337	G	T	SNP	COL4A3	ENST00000396578	human	ensembl	74_37	+1	known	missense	c.1006	p.G336C	0.988	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	tier1	-	-	109	0	0.00	6	50	89.29
GPR101	0	genome.wustl.edu	37	X	136113605	136113605	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	X	136113605	136113605	C	A	SNP	GPR101	ENST00000298110	human	ensembl	74_37	-1	known	missense	c.229	p.D77Y	0.999	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	-	no_errors	GPR101	HGNC	ENSG00000165370	tier1	-	-	53	0	0.00	35	23	39.66
GLCCI1	0	genome.wustl.edu	37	7	8099754	8099754	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	7	8099754	8099754	C	A	SNP	GLCCI1	ENST00000223145	human	ensembl	74_37	+1	known	missense	c.842	p.P281Q	1.000	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415	tier1	-	-	92	0	0.00	78	56	41.79
RABGAP1	0	genome.wustl.edu	37	9	125827752	125827753	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	9	125827752	125827753	-	A	INS	RABGAP1	ENST00000456584	human	ensembl	74_37	+1	known	frame_shift_ins	c.1716_1717	p.K576fs	0.000:0.000	pfscan_Rab-GTPase-TBC_dom	pfam_Kinesin-like,pfam_Rab-GTPase-TBC_dom,pfam_PTB/PI_dom,superfamily_Rab-GTPase-TBC_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	RABGAP1	HGNC	ENSG00000011454	tier1			41	0	0.00	59	6	9.23
LMNA	0	genome.wustl.edu	37	1	156084886	156084886	+	Silent	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	1	156084886	156084886	G	T	SNP	LMNA	ENST00000368300	human	ensembl	74_37	+1	known	silent	c.177	p.L59	1.000	pfam_IF,superfamily_Prefoldin	pfam_IF,pfam_Lamin_tail_dom,superfamily_Prefoldin	-	no_errors	LMNA	HGNC	ENSG00000160789	tier1	-	-	32	0	0.00	41	4	8.89
PCDH7	0	genome.wustl.edu	37	4	30725638	30725638	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	4	30725638	30725638	T	C	SNP	PCDH7	ENST00000543491	human	ensembl	74_37	+1	known	missense	c.2594	p.I865T	1.000	pfam_Protocadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH7	HGNC	ENSG00000169851	tier1	-	-	37	0	0.00	24	17	41.46
ENSG00000261351	0	genome.wustl.edu	37	15	66784398	66784398	+	RNA	DEL	A	A	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	15	66784398	66784398	A	-	DEL	ENSG00000261351	ENST00000565387	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	CTD-3185P2.1	Clone_based_vega_gene	ENSG00000261351	tier1			66	0	0.00	25	19	43.18
PDE3B	0	genome.wustl.edu	37	11	14891166	14891166	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	11	14891166	14891166	A	C	SNP	PDE3B	ENST00000282096	human	ensembl	74_37	+1	known	missense	c.3299	p.D1100A	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	tier1	-	-	63	0	0.00	29	34	53.97
R3HDM1	0	genome.wustl.edu	37	2	136437847	136437860	+	Frame_Shift_Del	DEL	GCCTGTTTACTATA	GCCTGTTTACTATA	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	GCCTGTTTACTATA	GCCTGTTTACTATA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	2	136437847	136437860	GCCTGTTTACTATA	-	DEL	R3HDM1	ENST00000264160	human	ensembl	74_37	+1	known	frame_shift_del	c.2307_2320	p.P770fs	1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd	-	no_errors	R3HDM1	HGNC	ENSG00000048991	tier1			NA	NA	NA	NA	NA	NA
LBP	0	genome.wustl.edu	37	20	36977952	36977952	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	20	36977952	36977952	G	-	DEL	LBP	ENST00000217407	human	ensembl	74_37	+1	known	frame_shift_del	c.126	p.A43fs	0.870	pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N	pfam_Lipid-bd_serum_glycop_C,pfam_Lipid-bd_serum_glycop_N,superfamily_Bactericidal_perm-incr_a/b_dom,smart_Lipid-bd_serum_glycop_N,smart_Lipid-bd_serum_glycop_C	-	no_errors	LBP	HGNC	ENSG00000129988	tier1			9	0	0.00	5	4	44.44
GLCCI1	0	genome.wustl.edu	37	7	8099753	8099753	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	7	8099753	8099753	C	A	SNP	GLCCI1	ENST00000223145	human	ensembl	74_37	+1	known	missense	c.841	p.P281T	1.000	NULL	NULL	-	no_errors	GLCCI1	HGNC	ENSG00000106415	tier1	-	-	91	0	0.00	77	54	41.22
GUSBP5	0	genome.wustl.edu	37	4	144481091	144481091	+	RNA	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	4	144481091	144481091	C	A	SNP	GUSBP5	ENST00000509369	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.593	-	-	-	no_errors	GUSBP5	HGNC	ENSG00000236296	tier1	-	-	57	0	0.00	33	4	10.81
DNTT	0	genome.wustl.edu	37	10	98064414	98064414	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	10	98064414	98064414	G	T	SNP	DNTT	ENST00000371174	human	ensembl	74_37	+1	known	nonsense	c.160	p.E54*	1.000	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu	pfam_DNA_pol_lambd_fingers_domain,pfam_BRCT_dom,pfam_Nucleotidyltransferase,superfamily_DNA_pol_b-like_N,superfamily_DNA_pol_lambd_fingers_domain,superfamily_BRCT_dom,smart_BRCT_dom,smart_DNA-dir_DNA_pol_X,pirsf_TdT/Mu,pfscan_BRCT_dom,prints_TdT/Mu,prints_DNA_pol_X,prints_DNA_pol_X_beta-like	-	no_errors	DNTT	HGNC	ENSG00000107447	tier1	-	-	31	0	0.00	43	4	8.51
POM121L2	0	genome.wustl.edu	37	6	27278578	27278578	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	6	27278578	27278578	C	A	SNP	POM121L2	ENST00000444565	human	ensembl	74_37	-1	known	missense	c.1372	p.D458Y	0.005	NULL	NULL	-	no_errors	POM121L2	HGNC	ENSG00000158553	tier1	-	-	43	0	0.00	43	4	8.51
DYNC2H1	0	genome.wustl.edu	37	11	103025517	103025517	+	Silent	SNP	A	A	G			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	11	103025517	103025517	A	G	SNP	DYNC2H1	ENST00000398093	human	ensembl	74_37	+1	known	silent	c.3552	p.Q1184	0.995	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	tier1	-	-	84	0	0.00	59	50	45.87
LCE4A	0	genome.wustl.edu	37	1	152681693	152681698	+	In_Frame_Del	DEL	TGTGGT	TGTGGT	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	TGTGGT	TGTGGT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	1	152681693	152681698	TGTGGT	-	DEL	LCE4A	ENST00000335535	human	ensembl	74_37	+1	known	in_frame_del	c.142_147	p.GC49in_frame_del	0.057:0.261:0.001:0.000:0.002:0.000	NULL	NULL	-	no_errors	LCE4A	HGNC	ENSG00000187170	tier1			NA	NA	NA	NA	NA	NA
STYK1	0	genome.wustl.edu	37	12	10772806	10772806	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	12	10772806	10772806	T	G	SNP	STYK1	ENST00000075503	human	ensembl	74_37	-1	known	missense	c.1206	p.E402D	0.642	superfamily_Kinase-like_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STYK1	HGNC	ENSG00000060140	tier1	-	-	18	0	0.00	2	16	88.89
SCCPDH	0	genome.wustl.edu	37	1	246890241	246890241	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	1	246890241	246890241	G	T	SNP	SCCPDH	ENST00000366510	human	ensembl	74_37	+1	known	missense	c.238	p.A80S	0.330	pfam_Saccharopine_DH/HSpermid_syn	pfam_Saccharopine_DH/HSpermid_syn	-	no_errors	SCCPDH	HGNC	ENSG00000143653	tier1	-	-	57	0	0.00	24	3	11.11
ADAM21P1	0	genome.wustl.edu	37	14	70713492	70713492	+	RNA	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	14	70713492	70713492	G	T	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.369	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	tier1	-	-	76	0	0.00	57	31	35.23
TP53I13	0	genome.wustl.edu	37	17	27899271	27899271	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	17	27899271	27899271	G	A	SNP	TP53I13	ENST00000301057	human	ensembl	74_37	+1	known	missense	c.625	p.A209T	0.997	NULL	NULL	-	no_errors	TP53I13	HGNC	ENSG00000167543	tier1	-	-	35	0	0.00	34	4	10.53
PCDHA6	0	genome.wustl.edu	37	5	140208442	140208442	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	5	140208442	140208442	G	C	SNP	PCDHA6	ENST00000529310	human	ensembl	74_37	+1	known	missense	c.766	p.D256H	0.000	pfam_Cadherin,superfamily_Cadherin-like,prints_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA6	HGNC	ENSG00000081842	tier1	-	-	92	0	0.00	58	46	43.81
FEZF2	0	genome.wustl.edu	37	3	62358026	62358026	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	3	62358026	62358026	T	C	SNP	FEZF2	ENST00000283268	human	ensembl	74_37	-1	known	missense	c.518	p.N173S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	FEZF2	HGNC	ENSG00000153266	tier1	-	-	44	0	0.00	20	11	35.48
MCM7	0	genome.wustl.edu	37	7	99695466	99695466	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	7	99695466	99695466	G	T	SNP	MCM7	ENST00000303887	human	ensembl	74_37	-1	known	missense	c.976	p.Q326K	1.000	pfam_MCM_DNA-dep_ATPase,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold,superfamily_P-loop_NTPase,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase,prints_MCM7,prints_MCM_4	-	no_errors	MCM7	HGNC	ENSG00000166508	tier1	-	-	63	0	0.00	44	4	8.33
PFKFB3	0	genome.wustl.edu	37	10	6255641	6255641	+	Silent	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	10	6255641	6255641	C	A	SNP	PFKFB3	ENST00000540253	human	ensembl	74_37	+1	known	silent	c.174	p.P58	0.002	pfam_6Phosfructo_kin,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,pirsf_Bifunct_6PFK/fruc_bisP_Ptase	pfam_6Phosfructo_kin,pfam_His_Pase_superF_clade-1,pfam_Chromatin_KTI12,superfamily_P-loop_NTPase,smart_His_Pase_superF_clade-1,pirsf_Bifunct_6PFK/fruc_bisP_Ptase,prints_6Pfruct_kin	-	no_errors	PFKFB3	HGNC	ENSG00000170525	tier1	-	-	35	0	0.00	37	4	9.76
TSPAN19	0	genome.wustl.edu	37	12	85409741	85409741	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	12	85409741	85409741	T	A	SNP	TSPAN19	ENST00000532498	human	ensembl	74_37	-1	known	missense	c.604	p.N202Y	0.449	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN19	HGNC	ENSG00000231738	tier1	-	-	102	0	0.00	1361	409	23.09
PARVB	0	genome.wustl.edu	37	22	44514977	44514977	+	Silent	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	22	44514977	44514977	G	T	SNP	PARVB	ENST00000406477	human	ensembl	74_37	+1	known	silent	c.432	p.L144	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	PARVB	HGNC	ENSG00000188677	tier1	-	-	50	0	0.00	11	4	26.67
CCDC68	0	genome.wustl.edu	37	18	52604167	52604167	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	18	52604167	52604167	C	T	SNP	CCDC68	ENST00000337363	human	ensembl	74_37	-1	known	missense	c.368	p.G123E	1.000	NULL	superfamily_Prefoldin	-	no_errors	CCDC68	HGNC	ENSG00000166510	tier1	-	-	59	0	0.00	40	31	43.66
EXOC7	0	genome.wustl.edu	37	17	74093906	74093906	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	17	74093906	74093906	C	T	SNP	EXOC7	ENST00000335146	human	ensembl	74_37	-1	known	missense	c.611	p.R204H	1.000	superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	tier1	-	-	35	0	0.00	22	4	15.38
DDX27	0	genome.wustl.edu	37	20	47852789	47852789	+	RNA	SNP	T	T	G			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	20	47852789	47852789	T	G	SNP	DDX27	ENST00000471144	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	DDX27	HGNC	ENSG00000124228	tier1	-	-	69	0	0.00	32	32	50.00
ENSG00000232274	0	genome.wustl.edu	37	1	143210640	143210640	+	RNA	SNP	C	C	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	1	143210640	143210640	C	T	SNP	ENSG00000232274	ENST00000412204	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.011	-	-	-	no_errors	RP11-782C8.2	Clone_based_vega_gene	ENSG00000232274	tier1	-	-	18	0	0.00	13	6	31.58
MUC6	0	genome.wustl.edu	37	11	1025278	1025278	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	11	1025278	1025278	G	T	SNP	MUC6	ENST00000421673	human	ensembl	74_37	-1	known	missense	c.2889	p.S963R	0.390	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	tier1	-	-	37	0	0.00	39	4	9.30
TMEM217	0	genome.wustl.edu	37	6	37186252	37186252	+	Silent	SNP	C	C	A			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	6	37186252	37186252	C	A	SNP	TMEM217	ENST00000336655	human	ensembl	74_37	-1	known	silent	c.555	p.S185	0.001	NULL	NULL	-	no_errors	TMEM217	HGNC	ENSG00000172738	tier1	-	-	40	0	0.00	24	29	54.72
CDH22	0	genome.wustl.edu	37	20	44815523	44815523	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	20	44815523	44815523	G	T	SNP	CDH22	ENST00000372262	human	ensembl	74_37	-1	known	missense	c.1487	p.P496H	1.000	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,superfamily_MFS_dom_general_subst_transpt,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH22	HGNC	ENSG00000149654	tier1	-	-	42	0	0.00	43	4	8.51
FAM111B	0	genome.wustl.edu	37	11	58892377	58892377	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB2H-01A-11D-A38Z-09	TCGA-DX-AB2H-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	82d85c9a-bd66-46f7-b1c3-9554056923aa	d6e07cf0-90ff-4c30-a9f5-733751378913	11	58892377	58892377	A	-	DEL	FAM111B	ENST00000343597	human	ensembl	74_37	+1	known	frame_shift_del	c.807	p.K272fs	0.000	NULL	superfamily_Trypsin-like_Pept_dom	-	no_errors	FAM111B	HGNC	ENSG00000189057	tier1			52	0	0.00	50	6	10.71
