Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
SERPINE3	0	genome.wustl.edu	37	13	51918390	51918390	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	13	51918390	51918390	A	-	DEL	SERPINE3	ENST00000521255	human	ensembl	74_37	+1	known	frame_shift_del	c.259	p.R88fs	0.396	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	pfam_Serpin_dom,superfamily_Serpin_dom,smart_Serpin_dom	-	no_errors	SERPINE3	HGNC	ENSG00000253309	tier1			18	0	0.00	11	2	15.38
TMEM40	0	genome.wustl.edu	37	3	12790156	12790158	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	3	12790156	12790158	GAG	-	DEL	TMEM40	ENST00000431022	human	ensembl	74_37	-1	known	in_frame_del	c.257_255	p.S86in_frame_del	1.000:0.999:0.996	NULL	NULL	-	no_errors	TMEM40	HGNC	ENSG00000088726	tier1			48	0	0.00	22	3	12.00
ENSG00000221741	0	genome.wustl.edu	37	5	167297559	167297560	+	RNA	INS	-	-	AT			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	5	167297559	167297560	-	AT	INS	ENSG00000221741	ENST00000408814	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors	AC093304.1	Clone_based_ensembl_gene	ENSG00000221741	tier1			41	0	0.00	20	3	13.04
OR52L1	0	genome.wustl.edu	37	11	6007450	6007450	+	Silent	SNP	G	G	A			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	11	6007450	6007450	G	A	SNP	OR52L1	ENST00000332249	human	ensembl	74_37	-1	known	silent	c.711	p.A237	0.044	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR52L1	HGNC	ENSG00000183313	tier1	-	-	25	0	0.00	14	3	17.65
WDFY3	0	genome.wustl.edu	37	4	85674951	85674951	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	4	85674951	85674951	G	-	DEL	WDFY3	ENST00000295888	human	ensembl	74_37	-1	known	frame_shift_del	c.5638	p.H1880fs	1.000	NULL	pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl_sf,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY3	HGNC	ENSG00000163625	tier1			44	0	0.00	15	2	11.76
TUBB8	0	genome.wustl.edu	37	10	93505	93505	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	10	93505	93505	C	T	SNP	TUBB8	ENST00000309812	human	ensembl	74_37	-1	known	missense	c.827	p.R276Q	1.000	pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tub_FtsZ_C,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Alpha_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_tubulin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB8	HGNC	ENSG00000173876	tier1	rs147114528	-	80	0	0.00	50	6	10.71
BLK	0	genome.wustl.edu	37	8	11403586	11403586	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	8	11403586	11403586	C	T	SNP	BLK	ENST00000259089	human	ensembl	74_37	+1	known	missense	c.149	p.P50L	0.056	superfamily_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	BLK	HGNC	ENSG00000136573	tier1	-	-	52	0	0.00	41	4	8.89
NAT10	0	genome.wustl.edu	37	11	34167679	34167679	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	11	34167679	34167679	G	T	SNP	NAT10	ENST00000257829	human	ensembl	74_37	+1	known	missense	c.3018	p.K1006N	1.000	NULL	pfam_Helicase_dom,pfam_DUF1726,superfamily_Acyl_CoA_acyltransferase,superfamily_P-loop_NTPase,pfscan_GNAT_dom	-	no_errors	NAT10	HGNC	ENSG00000135372	tier1	-	-	91	0	0.00	40	4	8.89
CACNA1E	0	genome.wustl.edu	37	1	181680102	181680103	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	1	181680102	181680103	AG	-	DEL	CACNA1E	ENST00000367573	human	ensembl	74_37	+1	known	frame_shift_del	c.1068_1069	p.R360fs	1.000:1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_R_a1su	-	no_errors	CACNA1E	HGNC	ENSG00000198216	tier1			28	0	0.00	11	2	15.38
PRKRIP1	0	genome.wustl.edu	37	7	102065517	102065519	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	GAG	GAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	7	102065517	102065519	GAG	-	DEL	PRKRIP1	ENST00000397912	human	ensembl	74_37	+1	known	in_frame_del	c.514_516	p.E175in_frame_del	1.000:1.000:0.998	pfam_DUF1168	pfam_DUF1168	-	no_errors	PRKRIP1	HGNC	ENSG00000128563	tier1			29	0	0.00	16	3	15.79
GGT7	0	genome.wustl.edu	37	20	33432915	33432916	+	RNA	INS	-	-	CACCAC			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	20	33432915	33432916	-	CACCAC	INS	GGT7	ENST00000469018	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.062:0.008	-	-	-	no_errors	GGT7	HGNC	ENSG00000131067	tier1			NA	NA	NA	NA	NA	NA
CCDC157	0	genome.wustl.edu	37	22	30769639	30769639	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	22	30769639	30769639	G	T	SNP	CCDC157	ENST00000338306	human	ensembl	74_37	+1	known	missense	c.1389	p.Q463H	1.000	NULL	superfamily_Prefoldin,superfamily_t-SNARE	-	no_errors	CCDC157	HGNC	ENSG00000187860	tier1	-	-	46	0	0.00	16	3	15.79
ENSG00000222586	0	genome.wustl.edu	37	15	57258577	57258577	+	RNA	SNP	C	C	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	15	57258577	57258577	C	T	SNP	ENSG00000222586	ENST00000410654	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors	AC010999.1	Clone_based_ensembl_gene	ENSG00000222586	tier1	-	-	29	0	0.00	13	3	18.75
C7	0	genome.wustl.edu	37	5	40958329	40958329	+	Silent	SNP	G	G	A			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	5	40958329	40958329	G	A	SNP	C7	ENST00000313164	human	ensembl	74_37	+1	known	silent	c.1455	p.A485	0.005	NULL	pfam_MACPF,pfam_Sushi_SCR_CCP,pfam_LDrepeatLR_classA_rpt,pfam_Thrombospondin_1_rpt,superfamily_Sushi_SCR_CCP,superfamily_Thrombospondin_1_rpt,superfamily_LDrepeatLR_classA_rpt,smart_Thrombospondin_1_rpt,smart_LDrepeatLR_classA_rpt,smart_MACPF,smart_Sushi_SCR_CCP,smart_FacI_MAC,pfscan_LDrepeatLR_classA_rpt,pfscan_Sushi_SCR_CCP,pfscan_Thrombospondin_1_rpt,prints_MAC_perforin	-	no_errors	C7	HGNC	ENSG00000112936	tier1	-	-	56	0	0.00	44	4	8.33
WDR66	0	genome.wustl.edu	37	12	122359385	122359385	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	12	122359385	122359385	C	-	DEL	WDR66	ENST00000288912	human	ensembl	74_37	+1	known	frame_shift_del	c.174	p.E59fs	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	tier1			26	0	0.00	14	4	22.22
GUSB	0	genome.wustl.edu	37	7	65445284	65445284	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	7	65445284	65445284	G	A	SNP	GUSB	ENST00000304895	human	ensembl	74_37	-1	known	missense	c.323	p.P108L	1.000	pfam_Glyco_hydro_2_N,superfamily_Galactose-bd-like	pfam_Glyco_hydro_2_TIM,pfam_Glyco_hydro_2_N,pfam_Glyco_hydro_2_Ig-like,superfamily_Glycoside_hydrolase_SF,superfamily_Galactose-bd-like,superfamily_Glyco_hydro_2_Ig-like,prints_Glyco_hydro_2	-	no_errors	GUSB	HGNC	ENSG00000169919	tier1	-	-	73	0	0.00	35	4	10.26
TRABD	0	genome.wustl.edu	37	22	50635954	50635954	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	22	50635954	50635954	C	T	SNP	TRABD	ENST00000303434	human	ensembl	74_37	+1	known	missense	c.608	p.A203V	0.998	pfam_Pheromone_shutdown_TraB	pfam_Pheromone_shutdown_TraB	-	no_errors	TRABD	HGNC	ENSG00000170638	tier1	-	-	64	0	0.00	31	4	11.43
ZKSCAN8	0	genome.wustl.edu	37	6	28121013	28121013	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	6	28121013	28121013	G	T	SNP	ZKSCAN8	ENST00000330236	human	ensembl	74_37	+1	known	nonsense	c.955	p.E319*	1.000	NULL	pfam_Znf_C2H2,pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZKSCAN8	HGNC	ENSG00000198315	tier1	-	-	43	0	0.00	46	4	8.00
CDK19	0	genome.wustl.edu	37	6	110943300	110943300	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	6	110943300	110943300	T	-	DEL	CDK19	ENST00000368911	human	ensembl	74_37	-1	known	frame_shift_del	c.1101	p.G368fs	1.000	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	CDK19	HGNC	ENSG00000155111	tier1			33	0	0.00	22	2	8.33
SUZ12	0	genome.wustl.edu	37	17	30264519	30264519	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	17	30264519	30264519	T	-	DEL	SUZ12	ENST00000322652	human	ensembl	74_37	+1	known	frame_shift_del	c.254	p.F86fs	1.000	NULL	pfam_Polycomb_protein_VEFS-Box	-	no_errors	SUZ12	HGNC	ENSG00000178691	tier1			36	0	0.00	17	3	15.00
KIAA0907	0	genome.wustl.edu	37	1	155893477	155893477	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	1	155893477	155893477	G	T	SNP	KIAA0907	ENST00000368321	human	ensembl	74_37	-1	known	missense	c.895	p.H299N	1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680	tier1	-	-	32	0	0.00	16	3	15.79
UHRF1	0	genome.wustl.edu	37	19	4941605	4941605	+	RNA	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	19	4941605	4941605	G	T	SNP	UHRF1	ENST00000262952	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.980	-	-	-	no_errors	UHRF1	HGNC	ENSG00000034063	tier1	-	-	82	0	0.00	43	4	8.51
FAM188B2	0	genome.wustl.edu	37	3	150608765	150608765	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	3	150608765	150608765	G	T	SNP	FAM188B2	ENST00000397891	human	ensembl	74_37	-1	known	missense	c.335	p.A112E	0.054	NULL	NULL	-	no_errors	FAM188B2	HGNC	ENSG00000214237	tier1	-	-	27	0	0.00	20	4	16.67
PLG	0	genome.wustl.edu	37	6	161134305	161134306	+	RNA	INS	-	-	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	6	161134305	161134306	-	T	INS	PLG	ENST00000462918	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.003	-	-	-	no_errors	PLG	HGNC	ENSG00000122194	tier1			13	0	0.00	9	6	40.00
SF3B1	0	genome.wustl.edu	37	2	198257908	198257908	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	2	198257908	198257908	G	T	SNP	SF3B1	ENST00000335508	human	ensembl	74_37	-1	known	missense	c.3544	p.L1182I	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	tier1	-	-	37	0	0.00	31	4	11.43
SOX5	0	genome.wustl.edu	37	12	23908624	23908624	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	12	23908624	23908624	G	T	SNP	SOX5	ENST00000451604	human	ensembl	74_37	-1	known	missense	c.516	p.D172E	1.000	NULL	pfam_HMG_box_dom,superfamily_HMG_box_dom,smart_HMG_box_dom,pfscan_HMG_box_dom	-	no_errors	SOX5	HGNC	ENSG00000134532	tier1	-	-	60	0	0.00	29	3	9.38
TMEM180	0	genome.wustl.edu	37	10	104233692	104233692	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	10	104233692	104233692	G	T	SNP	TMEM180	ENST00000238936	human	ensembl	74_37	+1	known	missense	c.1214	p.G405V	1.000	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	TMEM180	HGNC	ENSG00000138111	tier1	-	-	30	0	0.00	14	3	17.65
RBM3	0	genome.wustl.edu	37	X	48434476	48434476	+	RNA	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	X	48434476	48434476	G	T	SNP	RBM3	ENST00000485213	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RBM3	HGNC	ENSG00000102317	tier1	-	-	23	0	0.00	14	3	17.65
SLC13A3	0	genome.wustl.edu	37	20	45228619	45228619	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	20	45228619	45228619	C	T	SNP	SLC13A3	ENST00000279027	human	ensembl	74_37	-1	known	missense	c.599	p.S200N	0.988	pfam_Na/sul_symport	pfam_Na/sul_symport,pfam_Cit_transptr-like_dom	-	no_errors	SLC13A3	HGNC	ENSG00000158296	tier1	-	-	33	0	0.00	19	4	17.39
RNF144B	0	genome.wustl.edu	37	6	18399888	18399888	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	6	18399888	18399888	G	T	SNP	RNF144B	ENST00000259939	human	ensembl	74_37	+1	known	missense	c.123	p.K41N	1.000	smart_Znf_RING	pfam_Znf_C6HC,smart_Znf_RING,smart_Znf_C6HC	-	no_errors	RNF144B	HGNC	ENSG00000137393	tier1	-	-	22	0	0.00	17	4	19.05
SAP130	0	genome.wustl.edu	37	2	128753978	128753978	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	2	128753978	128753978	G	T	SNP	SAP130	ENST00000357702	human	ensembl	74_37	-1	known	missense	c.1379	p.S460Y	1.000	NULL	NULL	-	no_errors	SAP130	HGNC	ENSG00000136715	tier1	-	-	46	0	0.00	25	4	13.79
SPHKAP	0	genome.wustl.edu	37	2	228883699	228883699	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	2	228883699	228883699	G	T	SNP	SPHKAP	ENST00000392056	human	ensembl	74_37	-1	known	missense	c.1871	p.A624D	0.006	NULL	pfam_AKAP_110_C	-	no_errors	SPHKAP	HGNC	ENSG00000153820	tier1	-	-	48	0	0.00	21	3	12.50
NKIRAS2	0	genome.wustl.edu	37	17	40175789	40175789	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	17	40175789	40175789	G	T	SNP	NKIRAS2	ENST00000307641	human	ensembl	74_37	+1	known	missense	c.454	p.A152S	0.999	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_P-loop_NTPase,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	NKIRAS2	HGNC	ENSG00000168256	tier1	-	-	74	0	0.00	42	4	8.70
FUT10	0	genome.wustl.edu	37	8	33246610	33246610	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	8	33246610	33246610	G	T	SNP	FUT10	ENST00000327671	human	ensembl	74_37	-1	known	missense	c.1083	p.N361K	0.991	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	pfam_Glyco_trans_10,pirsf_Alpha-1_3-FUT_met	-	no_errors	FUT10	HGNC	ENSG00000172728	tier1	-	-	22	0	0.00	6	3	33.33
MROH8	0	genome.wustl.edu	37	20	35807790	35807791	+	Frame_Shift_Ins	INS	-	-	CTTATAGACAGGGCCCCGCGGCCGGCACT			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	20	35807790	35807791	-	CTTATAGACAGGGCCCCGCGGCCGGCACT	INS	MROH8	ENST00000400441	human	ensembl	74_37	-1	known	frame_shift_ins	c.94_93	p.H31fs	1.000:0.052	NULL	superfamily_ARM-type_fold	-	no_errors	MROH8	HGNC	ENSG00000101353	tier1			NA	NA	NA	NA	NA	NA
HELZ2	0	genome.wustl.edu	37	20	62202920	62202920	+	RNA	DEL	T	T	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	20	62202920	62202920	T	-	DEL	HELZ2	ENST00000479540	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.891	-	-	-	no_errors	HELZ2	HGNC	ENSG00000130589	tier1			32	0	0.00	18	3	14.29
GARNL3	0	genome.wustl.edu	37	9	130095397	130095397	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	9	130095397	130095397	A	-	DEL	GARNL3	ENST00000373387	human	ensembl	74_37	+1	known	frame_shift_del	c.766	p.N257fs	1.000	pfam_Rap_GAP_dom,pfscan_Rap_GAP_dom	pfam_Citron,pfam_Rap_GAP_dom,smart_Citron,pfscan_Rap_GAP_dom	-	no_errors	GARNL3	HGNC	ENSG00000136895	tier1			34	0	0.00	19	2	9.52
ETHE1	0	genome.wustl.edu	37	19	44031264	44031264	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	19	44031264	44031264	G	-	DEL	ETHE1	ENST00000292147	human	ensembl	74_37	-1	known	frame_shift_del	c.66	p.I23fs	0.785	NULL	pfam_Beta-lactamas-like,smart_Beta-lactamas-like	-	no_errors	ETHE1	HGNC	ENSG00000105755	tier1			22	0	0.00	9	2	18.18
SFMBT1	0	genome.wustl.edu	37	3	52941739	52941739	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	3	52941739	52941739	G	T	SNP	SFMBT1	ENST00000358080	human	ensembl	74_37	-1	known	nonsense	c.1917	p.Y639*	1.000	NULL	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT1	HGNC	ENSG00000163935	tier1	-	-	82	0	0.00	54	5	8.47
KCNN3	0	genome.wustl.edu	37	1	154680586	154680588	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	1	154680586	154680588	GCT	-	DEL	KCNN3	ENST00000271915	human	ensembl	74_37	-1	novel	in_frame_del	c.2062_2060	p.Q687in_frame_del	1.000:1.000:1.000	NULL	pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_2pore_dom_K_chnl_dom,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK	-	no_errors	KCNN3	HGNC	ENSG00000143603	tier1			37	0	0.00	23	3	11.54
WDR66	0	genome.wustl.edu	37	12	122359379	122359381	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-DX-AB2L-01A-32D-A417-09	TCGA-DX-AB2L-10A-01D-A41A-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	51b936bb-a69b-4ab5-81d6-542886686ed7	95900dfa-7dfd-4dfb-b86d-6d47974ffa61	12	122359379	122359381	AAC	-	DEL	WDR66	ENST00000288912	human	ensembl	74_37	+1	known	in_frame_del	c.168_170	p.T57in_frame_del	0.001:0.000:0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR66	HGNC	ENSG00000158023	tier1			27	0	0.00	14	4	22.22
