Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
FRMPD3	0	genome.wustl.edu	37	X	106846480	106846480	+	Silent	SNP	G	G	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	X	106846480	106846480	G	A	SNP	FRMPD3	ENST00000276185	human	ensembl	74_37	+1	known	silent	c.5310	p.Q1770	0.516	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ	-	no_errors	FRMPD3	HGNC	ENSG00000147234	tier1	-	-	29	0	0.00	39	4	9.30
TLL2	0	genome.wustl.edu	37	10	98240208	98240208	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	10	98240208	98240208	A	-	DEL	TLL2	ENST00000357947	human	ensembl	74_37	-1	known	frame_shift_del	c.184	p.W62fs	1.000	pirsf_BMP_1/tolloid-like	pirsf_BMP_1/tolloid-like,pfam_CUB_dom,pfam_Peptidase_M12A,pfam_EGF-like_Ca-bd_dom,superfamily_CUB_dom,smart_Peptidase_Metallo,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,prints_Peptidase_M12A,pfscan_CUB_dom,pfscan_EG-like_dom	-	no_errors	TLL2	HGNC	ENSG00000095587	tier1			84	0	0.00	52	24	31.58
AOX2P	0	genome.wustl.edu	37	2	201619758	201619759	+	RNA	DEL	TG	TG	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	2	201619758	201619759	TG	-	DEL	AOX2P	ENST00000472376	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	AOX2P	HGNC	ENSG00000243478	tier1			19	0	0.00	13	4	23.53
FHOD3	0	genome.wustl.edu	37	18	34229330	34229331	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	18	34229330	34229331	AG	-	DEL	FHOD3	ENST00000590592	human	ensembl	74_37	+1	putative	frame_shift_del	c.1248_1249	p.E419fs	0.997:1.000	NULL	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD3	HGNC	ENSG00000134775	tier1			32	0	0.00	22	2	8.33
ENSG00000232530	0	genome.wustl.edu	37	22	30636480	30636480	+	RNA	DEL	A	A	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	22	30636480	30636480	A	-	DEL	ENSG00000232530	ENST00000447565	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.602	-	-	-	no_errors	RP1-102K2.6	Clone_based_vega_gene	ENSG00000232530	tier1			15	0	0.00	20	2	9.09
TGFBR1	0	genome.wustl.edu	37	9	101894898	101894898	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	9	101894898	101894898	C	G	SNP	TGFBR1	ENST00000374994	human	ensembl	74_37	+1	known	missense	c.451	p.R151G	1.000	superfamily_Quinolinate_PRibosylTrfase_C	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_TGF_beta_rcpt_GS,pfam_Activin_rcpt,superfamily_Kinase-like_dom,superfamily_Quinolinate_PRibosylTrfase_C,smart_TGF_beta_rcpt_GS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	TGFBR1	HGNC	ENSG00000106799	tier1	-	-	49	0	0.00	22	13	37.14
PTPRC	0	genome.wustl.edu	37	1	198608430	198608430	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	1	198608430	198608430	C	G	SNP	PTPRC	ENST00000442510	human	ensembl	74_37	+1	known	missense	c.32	p.A11G	0.992	pirsf_Leukocyte_common_ag,pfam_PTP_recept_N	pirsf_Leukocyte_common_ag,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Leukocyte_common_ag,pfam_PTP_recept_N,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRC	HGNC	ENSG00000081237	tier1	-	-	81	0	0.00	45	38	45.78
VPS13D	0	genome.wustl.edu	37	1	12382770	12382770	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	1	12382770	12382770	G	A	SNP	VPS13D	ENST00000358136	human	ensembl	74_37	+1	known	missense	c.7882	p.E2628K	0.993	superfamily_UBA-like	pfam_VPSAP_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	VPS13D	HGNC	ENSG00000048707	tier1	-	-	30	0	0.00	29	24	45.28
ERH	0	genome.wustl.edu	37	14	69847207	69847207	+	RNA	SNP	C	C	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	14	69847207	69847207	C	A	SNP	ERH	ENST00000216520	human	ensembl	74_37	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	ERH	HGNC	ENSG00000100632	tier1	-	-	41	0	0.00	21	17	44.74
IGF2BP1	0	genome.wustl.edu	37	17	47121383	47121383	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	17	47121383	47121383	G	T	SNP	IGF2BP1	ENST00000290341	human	ensembl	74_37	+1	known	missense	c.1255	p.A419S	1.000	pfam_KH_dom_type_1,smart_KH_dom,pfscan_KH_dom_type_1	pfam_KH_dom_type_1,pfam_RRM_dom,smart_RRM_dom,smart_KH_dom,pfscan_KH_dom_type_1,pfscan_RRM_dom	-	no_errors	IGF2BP1	HGNC	ENSG00000159217	tier1	-	-	38	0	0.00	33	4	10.81
LINC00238	0	genome.wustl.edu	37	14	66965126	66965126	+	RNA	SNP	T	T	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	14	66965126	66965126	T	C	SNP	LINC00238	ENST00000359454	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.745	-	-	-	no_errors	LINC00238	HGNC	ENSG00000196553	tier1	-	-	29	0	0.00	18	5	21.74
ZNF695	0	genome.wustl.edu	37	1	247150681	247150681	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	1	247150681	247150681	G	T	SNP	ZNF695	ENST00000339986	human	ensembl	74_37	-1	known	missense	c.1136	p.P379Q	0.990	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF695	HGNC	ENSG00000197472	tier1	-	-	42	0	0.00	23	23	50.00
DMXL2	0	genome.wustl.edu	37	15	51791871	51791871	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	15	51791871	51791871	T	A	SNP	DMXL2	ENST00000543779	human	ensembl	74_37	-1	known	missense	c.3550	p.T1184S	1.000	NULL	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL2	HGNC	ENSG00000104093	tier1	-	-	28	0	0.00	22	6	21.43
SH2D7	0	genome.wustl.edu	37	15	78393658	78393658	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	15	78393658	78393658	G	A	SNP	SH2D7	ENST00000409568	human	ensembl	74_37	+1	putative	missense	c.655	p.G219R	0.000	NULL	NULL	-	no_errors	SH2D7	HGNC	ENSG00000183476	tier1	rs202061655	-	32	0	0.00	29	10	25.64
CDRT15L2	0	genome.wustl.edu	37	17	20483754	20483754	+	Silent	SNP	C	C	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	17	20483754	20483754	C	T	SNP	CDRT15L2	ENST00000399044	human	ensembl	74_37	+1	known	silent	c.558	p.G186	0.007	NULL	NULL	-	no_errors	CDRT15L2	HGNC	ENSG00000214819	tier1	-	-	13	0	0.00	30	11	26.83
DROSHA	0	genome.wustl.edu	37	5	31526229	31526229	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	5	31526229	31526229	G	A	SNP	DROSHA	ENST00000344624	human	ensembl	74_37	-1	known	nonsense	c.811	p.R271*	0.881	NULL	pfam_RNase_III_dom,pfam_dsRNA-bd_dom,superfamily_RNase_III_dom,smart_RNase_III_dom,smart_dsRNA-bd_dom,pfscan_dsRNA-bd_dom,pfscan_RNase_III_dom	-	no_errors	DROSHA	HGNC	ENSG00000113360	tier1	-	-	39	0	0.00	50	8	13.79
PITPNM1	0	genome.wustl.edu	37	11	67263036	67263036	+	Silent	SNP	C	C	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	11	67263036	67263036	C	T	SNP	PITPNM1	ENST00000356404	human	ensembl	74_37	-1	known	silent	c.2355	p.E785	0.996	pfam_DDHD,pfscan_DDHD	pfam_PI_transfer,pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD,prints_PI_transfer	-	no_errors	PITPNM1	HGNC	ENSG00000110697	tier1	-	-	59	0	0.00	45	52	53.61
ADAD2	0	genome.wustl.edu	37	16	84230349	84230349	+	Silent	SNP	C	C	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	16	84230349	84230349	C	T	SNP	ADAD2	ENST00000268624	human	ensembl	74_37	+1	known	silent	c.1869	p.A623	0.996	pfam_A_deamin,smart_A_deamin,pfscan_A_deamin	pfam_A_deamin,pfam_dsRNA-bd_dom,smart_A_deamin,pfscan_dsRNA-bd_dom,pfscan_A_deamin	-	no_errors	ADAD2	HGNC	ENSG00000140955	tier1	-	-	23	0	0.00	8	21	72.41
FSCN3	0	genome.wustl.edu	37	7	127238588	127238589	+	Frame_Shift_Ins	INS	-	-	G			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	7	127238588	127238589	-	G	INS	FSCN3	ENST00000265825	human	ensembl	74_37	+1	known	frame_shift_ins	c.1060_1061	p.R356fs	0.039:0.000	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN3	HGNC	ENSG00000106328	tier1			25	0	0.00	19	3	13.64
OR51D1	0	genome.wustl.edu	37	11	4661964	4661964	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	11	4661964	4661964	T	C	SNP	OR51D1	ENST00000357605	human	ensembl	74_37	+1	known	missense	c.944	p.V315A	0.008	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51D1	HGNC	ENSG00000197428	tier1	-	-	49	0	0.00	54	6	9.84
SENP3	0	genome.wustl.edu	37	17	7474945	7474945	+	RNA	DEL	T	T	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	17	7474945	7474945	T	-	DEL	SENP3	ENST00000578868	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	SENP3	HGNC	ENSG00000161956	tier1			31	0	0.00	30	4	11.76
COL5A3	0	genome.wustl.edu	37	19	10079110	10079110	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	19	10079110	10079110	T	C	SNP	COL5A3	ENST00000264828	human	ensembl	74_37	-1	known	missense	c.4265	p.D1422G	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	tier1	-	-	29	0	0.00	34	15	30.61
WDYHV1	0	genome.wustl.edu	37	8	124453718	124453718	+	RNA	SNP	C	C	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	8	124453718	124453718	C	A	SNP	WDYHV1	ENST00000517609	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	WDYHV1	HGNC	ENSG00000156795	tier1	-	-	32	0	0.00	18	9	33.33
PAPSS1	0	genome.wustl.edu	37	4	108641363	108641364	+	RNA	INS	-	-	TTCTCTGCGCCGGGA			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	4	108641363	108641364	-	TTCTCTGCGCCGGGA	INS	PAPSS1	ENST00000504987	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PAPSS1	HGNC	ENSG00000138801	tier1			NA	NA	NA	NA	NA	NA
SDK2	0	genome.wustl.edu	37	17	71426651	71426651	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	17	71426651	71426651	T	C	SNP	SDK2	ENST00000392650	human	ensembl	74_37	-1	known	missense	c.1582	p.R528G	1.000	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	SDK2	HGNC	ENSG00000069188	tier1	-	-	27	0	0.00	33	4	10.81
NNT	0	genome.wustl.edu	37	5	43702778	43702778	+	Silent	SNP	A	A	G			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	5	43702778	43702778	A	G	SNP	NNT	ENST00000264663	human	ensembl	74_37	+1	known	silent	c.3051	p.Q1017	0.944	pfam_NADH_DH_b	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	tier1	-	-	88	0	0.00	58	53	47.75
GRIK3	0	genome.wustl.edu	37	1	37271869	37271869	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	1	37271869	37271869	G	A	SNP	GRIK3	ENST00000373091	human	ensembl	74_37	-1	known	missense	c.2150	p.A717V	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,superfamily_Peripla_BP_I,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIK3	HGNC	ENSG00000163873	tier1	-	-	26	0	0.00	13	33	70.21
DOT1L	0	genome.wustl.edu	37	19	2214468	2214468	+	Splice_Site	SNP	A	A	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	19	2214468	2214468	A	T	SNP	DOT1L	ENST00000398665	human	ensembl	74_37	+1	known	splice_site	c.1798-2	e19-2	0.997	-	-	-	no_errors	DOT1L	HGNC	ENSG00000104885	tier1	-	-	85	0	0.00	118	11	8.53
WARS	0	genome.wustl.edu	37	14	100828076	100828076	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	14	100828076	100828076	A	C	SNP	WARS	ENST00000355338	human	ensembl	74_37	-1	known	missense	c.282	p.S94R	0.939	NULL	pfam_aa-tRNA-synth_Ic,pfam_WHEP-TRS,superfamily_S15_NS1_RNA-bd,pfscan_WHEP-TRS,prints_Trp-tRNA-ligase,tigrfam_Trp-tRNA-ligase	-	no_errors	WARS	HGNC	ENSG00000140105	tier1	-	-	72	0	0.00	36	19	34.55
UNC13A	0	genome.wustl.edu	37	19	17753760	17753760	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	19	17753760	17753760	G	T	SNP	UNC13A	ENST00000428389	human	ensembl	74_37	-1	known	missense	c.2630	p.T877N	1.000	superfamily_C2_dom	pfam_Munc13_subgr_dom-2,pfam_C2_dom,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_dom,smart_C2_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom	-	no_errors	UNC13A	HGNC	ENSG00000130477	tier1	-	-	39	0	0.00	45	4	8.16
MYO18B	0	genome.wustl.edu	37	22	26286800	26286800	+	Silent	SNP	G	G	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	22	26286800	26286800	G	A	SNP	MYO18B	ENST00000335473	human	ensembl	74_37	+1	known	silent	c.4392	p.R1464	0.998	superfamily_tRNA-bd_arm	pfam_Myosin_head_motor_dom,superfamily_P-loop_NTPase,superfamily_tRNA-bd_arm,superfamily_Ribosomal_zn-bd,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO18B	HGNC	ENSG00000133454	tier1	-	-	48	0	0.00	26	28	51.85
KMT2A	0	genome.wustl.edu	37	11	118352703	118352709	+	Frame_Shift_Del	DEL	TGGTCAT	TGGTCAT	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	TGGTCAT	TGGTCAT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	11	118352703	118352709	TGGTCAT	-	DEL	KMT2A	ENST00000389506	human	ensembl	74_37	+1	known	frame_shift_del	c.3908_3914	p.L1303fs	0.014:0.002:0.006:0.000:0.001:0.000:0.001	pirsf_MeTrfase_trithorax	pfam_SET_dom,pfam_FYrich_C,pfam_Znf_PHD-finger,pfam_FYrich_N,pfam_Znf_CXXC,superfamily_Znf_FYVE_PHD,superfamily_Bromodomain,smart_Znf_PHD,smart_Bromodomain,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pirsf_MeTrfase_trithorax,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC,pfscan_Bromodomain	-	no_errors	KMT2A	HGNC	ENSG00000118058	tier1			NA	NA	NA	NA	NA	NA
CRB1	0	genome.wustl.edu	37	1	197398635	197398635	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	1	197398635	197398635	T	A	SNP	CRB1	ENST00000367400	human	ensembl	74_37	+1	known	nonsense	c.2733	p.C911*	1.000	pfam_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EG-like_dom,pfam_Laminin_G,pfam_EGF_extracell,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	CRB1	HGNC	ENSG00000134376	tier1	-	-	47	0	0.00	45	33	42.31
ADAM21P1	0	genome.wustl.edu	37	14	70713103	70713103	+	RNA	SNP	T	T	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	14	70713103	70713103	T	C	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	tier1	-	-	69	0	0.00	40	18	31.03
C9orf62	0	genome.wustl.edu	37	9	138235877	138235877	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	9	138235877	138235877	T	C	SNP	C9orf62	ENST00000320778	human	ensembl	74_37	+1	putative	missense	c.83	p.L28P	0.001	NULL	NULL	-	no_errors	C9orf62	HGNC	ENSG00000178243	tier1	-	-	31	0	0.00	21	12	36.36
KLC2	0	genome.wustl.edu	37	11	66031830	66031830	+	Silent	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	11	66031830	66031830	G	T	SNP	KLC2	ENST00000316924	human	ensembl	74_37	+1	known	silent	c.1131	p.L377	1.000	pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR-contain_dom	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR_1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC2	HGNC	ENSG00000174996	tier1	-	-	49	0	0.00	38	4	9.52
LOC440905	0	genome.wustl.edu	37	2	130792055	130792055	+	RNA	SNP	T	T	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	2	130792055	130792055	T	C	SNP	LOC440905	ENST00000444030	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.298	-	-	-	no_errors	AC018865.8	Clone_based_vega_gene	ENSG00000180178	tier1	-	-	52	0	0.00	42	16	27.59
BCLAF1	0	genome.wustl.edu	37	6	136599135	136599135	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	6	136599135	136599135	A	T	SNP	BCLAF1	ENST00000531224	human	ensembl	74_37	-1	known	missense	c.884	p.I295N	1.000	NULL	NULL	-	no_errors	BCLAF1	HGNC	ENSG00000029363	tier1	-	-	227	0	0.00	153	31	16.76
NUP210	0	genome.wustl.edu	37	3	13359266	13359266	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	3	13359266	13359266	G	T	SNP	NUP210	ENST00000254508	human	ensembl	74_37	-1	known	nonsense	c.5579	p.S1860*	0.087	NULL	pfam_Big_2,superfamily_Invasin/intimin_cell_adhesion,superfamily_Cadherin-like,smart_Big_2	-	no_errors	NUP210	HGNC	ENSG00000132182	tier1	-	-	32	0	0.00	35	4	10.26
ITGB1BP1	0	genome.wustl.edu	37	2	9552383	9552384	+	Frame_Shift_Ins	INS	-	-	TT			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	2	9552383	9552384	-	TT	INS	ITGB1BP1	ENST00000483795	human	ensembl	74_37	-1	known	frame_shift_ins	c.303_302	p.N101fs	0.000:0.000	NULL	pfam_Integrin-bd_ICAP-1	-	no_errors	ITGB1BP1	HGNC	ENSG00000119185	tier1			25	0	0.00	28	4	12.50
ATRX	0	genome.wustl.edu	37	X	76952083	76952084	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	X	76952083	76952084	-	A	INS	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	frame_shift_ins	c.352_351	p.M117fs	1.000:1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1			36	0	0.00	10	25	71.43
OR6A2	0	genome.wustl.edu	37	11	6816255	6816255	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	11	6816255	6816255	C	A	SNP	OR6A2	ENST00000332601	human	ensembl	74_37	-1	known	missense	c.685	p.A229S	0.968	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6A2	HGNC	ENSG00000184933	tier1	-	-	35	0	0.00	40	5	11.11
HSP90AB1	0	genome.wustl.edu	37	6	44221262	44221262	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	6	44221262	44221262	A	G	SNP	HSP90AB1	ENST00000353801	human	ensembl	74_37	+1	known	missense	c.2102	p.N701S	0.999	pfam_Hsp90_fam,pirsf_Hsp90_fam	pfam_Hsp90_fam,pfam_HATPase_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_HATPase_ATP-bd,smart_HATPase_ATP-bd,pirsf_Hsp90_fam,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	tier1	rs201760495	-	42	0	0.00	39	5	11.36
PRIM2	0	genome.wustl.edu	37	6	57182423	57182423	+	RNA	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	6	57182423	57182423	G	T	SNP	PRIM2	ENST00000274891	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.540	-	-	-	no_errors	PRIM2	HGNC	ENSG00000146143	tier1	-	-	49	0	0.00	67	6	8.22
KIF13B	0	genome.wustl.edu	37	8	29006108	29006108	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	8	29006108	29006108	G	T	SNP	KIF13B	ENST00000524189	human	ensembl	74_37	-1	known	missense	c.1799	p.A600D	0.990	NULL	pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_CAP-Gly_domain,pfam_KIF1B,pfam_FHA_dom,superfamily_P-loop_NTPase,superfamily_CAP-Gly_domain,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_CAP-Gly_domain,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF13B	HGNC	ENSG00000197892	tier1	-	-	50	0	0.00	43	4	8.51
UGGT2	0	genome.wustl.edu	37	13	96513064	96513064	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	13	96513064	96513064	G	C	SNP	UGGT2	ENST00000376747	human	ensembl	74_37	-1	known	missense	c.3718	p.H1240D	1.000	NULL	pfam_UDP-g_GGtrans,pfam_Glyco_trans_8	-	no_errors	UGGT2	HGNC	ENSG00000102595	tier1	-	-	300	0	0.00	455	64	12.31
ADAMTS9	0	genome.wustl.edu	37	3	64502706	64502707	+	RNA	DEL	AC	AC	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	3	64502706	64502707	AC	-	DEL	ADAMTS9	ENST00000467257	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	tier1			36	0	0.00	22	4	15.38
OR6C3	0	genome.wustl.edu	37	12	55725940	55725940	+	Silent	SNP	C	C	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	12	55725940	55725940	C	A	SNP	OR6C3	ENST00000379667	human	ensembl	74_37	+1	known	silent	c.456	p.T152	0.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C3	HGNC	ENSG00000205329	tier1	-	-	53	0	0.00	53	8	13.11
FHOD1	0	genome.wustl.edu	37	16	67267601	67267601	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	16	67267601	67267601	G	T	SNP	FHOD1	ENST00000258201	human	ensembl	74_37	-1	known	missense	c.2005	p.H669N	1.000	pfam_FH2_Formin,smart_FH2_Formin	pfam_FH2_Formin,superfamily_ARM-type_fold,smart_FH2_Formin	-	no_errors	FHOD1	HGNC	ENSG00000135723	tier1	-	-	50	0	0.00	45	4	8.16
CTBS	0	genome.wustl.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	GCAGCGCCA	GCAGCGCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	1	85039999	85040007	GCAGCGCCA	-	DEL	CTBS	ENST00000370630	human	ensembl	74_37	-1	known	in_frame_del	c.100_92	p.LAL31in_frame_del	0.000:0.011:0.000:0.000:0.002:0.000:0.000:0.649:0.644	NULL	pfam_Glyco_hydro18cat,superfamily_Glycoside_hydrolase_SF,smart_Chitinase_II	-	no_errors	CTBS	HGNC	ENSG00000117151	tier1			NA	NA	NA	NA	NA	NA
DNAH11	0	genome.wustl.edu	37	7	21698459	21698459	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	7	21698459	21698459	C	T	SNP	DNAH11	ENST00000328843	human	ensembl	74_37	+1	known	missense	c.5153	p.T1718M	0.655	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	tier1	rs202034810	-	70	0	0.00	20	39	66.10
NPTX2	0	genome.wustl.edu	37	7	98256582	98256582	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	7	98256582	98256582	C	A	SNP	NPTX2	ENST00000265634	human	ensembl	74_37	+1	known	missense	c.994	p.L332M	1.000	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin	pfam_Pentaxin,superfamily_ConA-like_lec_gl_sf,smart_Pentaxin,prints_Pentaxin	-	no_errors	NPTX2	HGNC	ENSG00000106236	tier1	-	-	43	0	0.00	29	21	42.00
PSIP1	0	genome.wustl.edu	37	9	15472612	15472612	+	RNA	DEL	A	A	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	9	15472612	15472612	A	-	DEL	PSIP1	ENST00000495873	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PSIP1	HGNC	ENSG00000164985	tier1			50	0	0.00	32	6	15.79
TCERG1	0	genome.wustl.edu	37	5	145890060	145890060	+	Nonsense_Mutation	SNP	T	T	G			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	5	145890060	145890060	T	G	SNP	TCERG1	ENST00000296702	human	ensembl	74_37	+1	known	nonsense	c.3152	p.L1051*	1.000	pfam_FF_domain,smart_FF_domain	pfam_FF_domain,pfam_WW_dom,superfamily_FF_domain,superfamily_WW_dom,smart_WW_dom,smart_FF_domain,pfscan_WW_dom	-	no_errors	TCERG1	HGNC	ENSG00000113649	tier1	-	-	39	0	0.00	71	8	10.13
MAG	0	genome.wustl.edu	37	19	35786326	35786326	+	Silent	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	19	35786326	35786326	G	T	SNP	MAG	ENST00000392213	human	ensembl	74_37	+1	known	silent	c.15	p.T5	0.353	NULL	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	MAG	HGNC	ENSG00000105695	tier1	-	-	42	0	0.00	16	3	15.79
RUSC1-AS1	0	genome.wustl.edu	37	1	155290825	155290825	+	RNA	SNP	G	G	C			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	1	155290825	155290825	G	C	SNP	RUSC1-AS1	ENST00000450199	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.007	-	-	-	no_errors	RUSC1-AS1	HGNC	ENSG00000225855	tier1	-	-	23	0	0.00	14	19	57.58
FAM109A	0	genome.wustl.edu	37	12	111800949	111800949	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	12	111800949	111800949	C	T	SNP	FAM109A	ENST00000361483	human	ensembl	74_37	-1	known	missense	c.322	p.A108T	0.999	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	FAM109A	HGNC	ENSG00000198324	tier1	-	-	27	0	0.00	14	3	17.65
FRA10AC1	0	genome.wustl.edu	37	10	95443848	95443848	+	Silent	SNP	G	G	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	10	95443848	95443848	G	A	SNP	FRA10AC1	ENST00000359204	human	ensembl	74_37	-1	known	silent	c.633	p.C211	1.000	pfam_Folate-sensitive_fs_Fra10Ac1	pfam_Folate-sensitive_fs_Fra10Ac1	-	no_errors	FRA10AC1	HGNC	ENSG00000148690	tier1	-	-	48	0	0.00	42	4	8.70
DNAH6	0	genome.wustl.edu	37	2	84885458	84885458	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	2	84885458	84885458	C	T	SNP	DNAH6	ENST00000237449	human	ensembl	74_37	+1	known	missense	c.5800	p.R1934C	0.996	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,smart_AAA+_ATPase	-	no_errors	DNAH6	HGNC	ENSG00000115423	tier1	-	-	94	0	0.00	95	47	33.10
ENSG00000253381	0	genome.wustl.edu	37	8	39961703	39961703	+	RNA	SNP	A	A	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	8	39961703	39961703	A	T	SNP	ENSG00000253381	ENST00000524098	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	RP11-359E19.1	Clone_based_vega_gene	ENSG00000253381	tier1	-	-	74	0	0.00	56	37	39.78
SLC26A4	0	genome.wustl.edu	37	7	107315522	107315522	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	7	107315522	107315522	A	-	DEL	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	frame_shift_del	c.733	p.N246fs	0.998	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	tier1			29	0	0.00	23	2	8.00
IL16	0	genome.wustl.edu	37	15	81592162	81592164	+	In_Frame_Del	DEL	CCT	CCT	-			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	CCT	CCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	15	81592162	81592164	CCT	-	DEL	IL16	ENST00000302987	human	ensembl	74_37	+1	known	in_frame_del	c.2495_2497	p.S836in_frame_del	0.001:0.004:0.009	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ,prints_IL-16	-	no_errors	IL16	HGNC	ENSG00000172349	tier1			36	0	0.00	41	6	12.77
PRIMA1	0	genome.wustl.edu	37	14	94203701	94203701	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	14	94203701	94203701	G	T	SNP	PRIMA1	ENST00000393140	human	ensembl	74_37	-1	known	missense	c.245	p.S82Y	1.000	NULL	NULL	-	no_errors	PRIMA1	HGNC	ENSG00000175785	tier1	-	-	54	0	0.00	35	4	10.26
KALRN	0	genome.wustl.edu	37	3	124160810	124160810	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	3	124160810	124160810	C	T	SNP	KALRN	ENST00000360013	human	ensembl	74_37	+1	known	missense	c.3211	p.R1071W	1.000	NULL	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Fibronectin_type3,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	KALRN	HGNC	ENSG00000160145	tier1	-	-	71	0	0.00	52	12	18.75
ELSPBP1	0	genome.wustl.edu	37	19	48517529	48517529	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	19	48517529	48517529	G	A	SNP	ELSPBP1	ENST00000339841	human	ensembl	74_37	+1	known	missense	c.172	p.V58M	0.000	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	pfam_FN_type2_col-bd,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	ELSPBP1	HGNC	ENSG00000169393	tier1	rs145096514	GMAF=0.0005	51	0	0.00	28	36	56.25
PGBD3	0	genome.wustl.edu	37	10	50724120	50724120	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB2P-01A-11D-A387-09	TCGA-DX-AB2P-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	229d1a12-6364-4b92-8764-35b6beafc697	6fb55b48-5d07-4cfe-b318-bdb9270807e7	10	50724120	50724120	G	T	SNP	PGBD3	ENST00000603152	human	ensembl	74_37	-1	known	nonsense	c.2445	p.Y815*	0.002	NULL	NULL	-	no_errors	PGBD3	HGNC	ENSG00000243251	tier1	-	-	43	0	0.00	22	4	15.38
