Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PRSS30P	0	genome.wustl.edu	37	16	2889857	2889857	+	RNA	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	16	2889857	2889857	C	T	SNP	PRSS30P	ENST00000475030	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.855	-	-	-	no_errors	PRSS30P	HGNC	ENSG00000172460	tier1	-	-	50	0	0.00	38	14	26.92
HNRNPD	0	genome.wustl.edu	37	4	83278573	83278573	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	4	83278573	83278573	C	G	SNP	HNRNPD	ENST00000313899	human	ensembl	74_37	-1	known	missense	c.646	p.D216H	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	pfam_RRM_dom,pfam_CARG-binding_factor_N,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HNRNPD	HGNC	ENSG00000138668	tier1	-	-	79	0	0.00	85	18	17.48
AGO2	0	genome.wustl.edu	37	8	141545618	141545618	+	Silent	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	8	141545618	141545618	G	A	SNP	AGO2	ENST00000220592	human	ensembl	74_37	-1	known	silent	c.2220	p.I740	1.000	pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi	pfam_Piwi,pfam_PAZ_dom,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ_dom,smart_PAZ_dom,smart_Piwi,pfscan_PAZ_dom,pfscan_Piwi	-	no_errors	AGO2	HGNC	ENSG00000123908	tier1	-	-	34	0	0.00	45	12	20.69
TPRN	0	genome.wustl.edu	37	9	140087025	140087027	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	9	140087025	140087027	TCC	-	DEL	TPRN	ENST00000409012	human	ensembl	74_37	-1	known	in_frame_del	c.1844_1842	p.E618in_frame_del	0.745:0.829:0.911	NULL	NULL	-	no_errors	TPRN	HGNC	ENSG00000176058	tier1			45	0	0.00	36	4	10.00
SBF1	0	genome.wustl.edu	37	22	50902801	50902801	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	22	50902801	50902801	C	T	SNP	SBF1	ENST00000380817	human	ensembl	74_37	-1	known	missense	c.1706	p.C569Y	1.000	pfam_SBF2	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotubularin-like_Pase_dom,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	tier1	-	-	68	0	0.00	20	4	16.67
ITGB4	0	genome.wustl.edu	37	17	73728050	73728050	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	73728050	73728050	A	T	SNP	ITGB4	ENST00000200181	human	ensembl	74_37	+1	known	missense	c.1373	p.E458V	1.000	pirsf_Integrin_bsu-4	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like_fold,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,prints_Integrin_bsu,pfscan_Fibronectin_type3	-	no_errors	ITGB4	HGNC	ENSG00000132470	tier1	-	-	45	0	0.00	43	19	30.65
DEAF1	0	genome.wustl.edu	37	11	680002	680003	+	RNA	INS	-	-	ACCAGGATG			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	11	680002	680003	-	ACCAGGATG	INS	DEAF1	ENST00000525904	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	DEAF1	HGNC	ENSG00000177030	tier1			NA	NA	NA	NA	NA	NA
CSMD3	0	genome.wustl.edu	37	8	114326938	114326938	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	8	114326938	114326938	C	A	SNP	CSMD3	ENST00000297405	human	ensembl	74_37	-1	known	missense	c.263	p.G88V	1.000	pfam_CUB_dom,superfamily_CUB_dom,smart_CUB_dom,pfscan_CUB_dom	pfam_CUB_dom,pfam_Sushi_SCR_CCP,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_Sushi_SCR_CCP,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	tier1	-	-	74	0	0.00	47	17	26.56
SIGLEC11	0	genome.wustl.edu	37	19	50462106	50462106	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	19	50462106	50462106	C	A	SNP	SIGLEC11	ENST00000447370	human	ensembl	74_37	-1	known	missense	c.1157	p.S386I	0.009	pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC11	HGNC	ENSG00000161640	tier1	-	-	100	0	0.00	91	21	18.58
DNM1P46	0	genome.wustl.edu	37	15	100330738	100330738	+	RNA	DEL	A	A	-			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	15	100330738	100330738	A	-	DEL	DNM1P46	ENST00000341853	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	tier1			19	0	0.00	26	3	10.34
PLG	0	genome.wustl.edu	37	6	161132490	161132490	+	RNA	SNP	T	T	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	6	161132490	161132490	T	C	SNP	PLG	ENST00000494325	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	PLG	HGNC	ENSG00000122194	tier1	-	-	102	0	0.00	154	33	17.65
DDX52	0	genome.wustl.edu	37	17	36003427	36003427	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	36003427	36003427	C	T	SNP	DDX52	ENST00000349699	human	ensembl	74_37	-1	known	missense	c.23	p.R8H	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_P-loop_NTPase,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX52	HGNC	ENSG00000141141	tier1	-	-	83	0	0.00	22	34	60.71
CX3CL1	0	genome.wustl.edu	37	16	57416226	57416226	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	16	57416226	57416226	C	T	SNP	CX3CL1	ENST00000006053	human	ensembl	74_37	+1	known	missense	c.476	p.T159M	0.000	NULL	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CX3CL1	-	no_errors	CX3CL1	HGNC	ENSG00000006210	tier1	-	-	38	0	0.00	8	18	69.23
TSPAN7	0	genome.wustl.edu	37	X	38422291	38422291	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	X	38422291	38422291	T	A	SNP	TSPAN7	ENST00000422612	human	ensembl	74_37	+1	known	missense	c.24	p.N8K	0.016	NULL	pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin	-	no_errors	TSPAN7	HGNC	ENSG00000156298	tier1	-	-	57	0	0.00	22	34	60.71
KBTBD12	0	genome.wustl.edu	37	3	127642390	127642390	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	3	127642390	127642390	G	T	SNP	KBTBD12	ENST00000405109	human	ensembl	74_37	+1	known	missense	c.486	p.E162D	1.000	pfam_BACK,smart_BACK,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KBTBD12	HGNC	ENSG00000187715	tier1	-	-	24	0	0.00	46	17	26.98
DOPEY1	0	genome.wustl.edu	37	6	83877585	83877585	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	6	83877585	83877585	A	C	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.7097	p.N2366T	0.976	NULL	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	tier1	-	-	47	0	0.00	57	9	13.43
TUBB4A	0	genome.wustl.edu	37	19	6501350	6501350	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	19	6501350	6501350	A	G	SNP	TUBB4A	ENST00000598006	human	ensembl	74_37	-1	putative	missense	c.182	p.L61P	0.184	NULL	superfamily_Tubulin_FtsZ_GTPase	-	no_errors	TUBB4A	HGNC	ENSG00000104833	tier1	-	-	44	0	0.00	73	14	16.09
LOC101929974	0	genome.wustl.edu	37	12	131649622	131649622	+	RNA	SNP	C	C	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	12	131649622	131649622	C	A	SNP	LOC101929974	ENST00000376678	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-638F5.1	Clone_based_vega_gene	ENSG00000204603	tier1	rs200829826	-	32	0	0.00	24	8	25.00
C1S	0	genome.wustl.edu	37	12	7175059	7175059	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	12	7175059	7175059	G	A	SNP	C1S	ENST00000328916	human	ensembl	74_37	+1	known	missense	c.1179	p.M393I	0.748	pfam_Sushi_SCR_CCP,superfamily_Sushi_SCR_CCP,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Peptidase_S1,pfam_CUB_dom,pfam_Sushi_SCR_CCP,pfam_EGF-like_Ca-bd_dom,superfamily_Trypsin-like_Pept_dom,superfamily_CUB_dom,superfamily_Sushi_SCR_CCP,smart_CUB_dom,smart_EGF-like_Ca-bd_dom,smart_Sushi_SCR_CCP,smart_Peptidase_S1,pfscan_CUB_dom,pfscan_Sushi_SCR_CCP,pfscan_Peptidase_S1,prints_Peptidase_S1A	-	no_errors	C1S	HGNC	ENSG00000182326	tier1	-	-	36	0	0.00	17	11	39.29
FAM9A	0	genome.wustl.edu	37	X	8764385	8764385	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	X	8764385	8764385	T	C	SNP	FAM9A	ENST00000381003	human	ensembl	74_37	-1	known	missense	c.412	p.I138V	0.000	NULL	NULL	-	no_errors	FAM9A	HGNC	ENSG00000183304	tier1	-	-	86	0	0.00	140	33	19.08
TRPS1	0	genome.wustl.edu	37	8	116616386	116616386	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	8	116616386	116616386	T	C	SNP	TRPS1	ENST00000395715	human	ensembl	74_37	-1	known	missense	c.1810	p.N604D	1.000	NULL	pfam_Znf_GATA,smart_Znf_C2H2-like,smart_Znf_GATA,pfscan_Znf_C2H2,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	TRPS1	HGNC	ENSG00000104447	tier1	-	-	57	0	0.00	54	11	16.92
LOC101929974	0	genome.wustl.edu	37	12	131649643	131649643	+	RNA	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	12	131649643	131649643	G	A	SNP	LOC101929974	ENST00000376678	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-638F5.1	Clone_based_vega_gene	ENSG00000204603	tier1	rs199649948	-	36	0	0.00	25	8	24.24
ZNF880	0	genome.wustl.edu	37	19	52873225	52873225	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	19	52873225	52873225	C	T	SNP	ZNF880	ENST00000422689	human	ensembl	74_37	+1	known	missense	c.7	p.R3W	0.014	superfamily_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF880	HGNC	ENSG00000221923	tier1	-	-	84	0	0.00	72	38	34.55
DHH	0	genome.wustl.edu	37	12	49484936	49484936	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	12	49484936	49484936	G	T	SNP	DHH	ENST00000266991	human	ensembl	74_37	-1	known	missense	c.540	p.N180K	1.000	pfam_Hedgehog_signaling_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,pirsf_Hedgehog,prints_Hedgehog	pfam_Hedgehog_signaling_dom,pfam_Hint_dom,superfamily_Hedgehog_sig/DD-Pept_Zn-bd_dom,smart_Hint_dom_N,smart_Hint_dom_C,pirsf_Hedgehog,prints_Hedgehog	-	no_errors	DHH	HGNC	ENSG00000139549	tier1	-	-	60	0	0.00	46	4	8.00
DOPEY1	0	genome.wustl.edu	37	6	83877852	83877852	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	6	83877852	83877852	A	G	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.7364	p.E2455G	1.000	NULL	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	tier1	-	-	47	0	0.00	98	19	16.24
IPO5	0	genome.wustl.edu	37	13	98666439	98666439	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	13	98666439	98666439	C	T	SNP	IPO5	ENST00000261574	human	ensembl	74_37	+1	known	missense	c.2350	p.L784F	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_Importin-beta_N	-	no_errors	IPO5	HGNC	ENSG00000065150	tier1	-	-	66	0	0.00	113	23	16.91
USH1C	0	genome.wustl.edu	37	11	17542934	17542934	+	Silent	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	11	17542934	17542934	C	T	SNP	USH1C	ENST00000005226	human	ensembl	74_37	-1	known	silent	c.1044	p.K348	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	USH1C	HGNC	ENSG00000006611	tier1	-	-	113	0	0.00	21	40	65.57
LINC00200	0	genome.wustl.edu	37	10	1205708	1205708	+	RNA	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	10	1205708	1205708	G	A	SNP	LINC00200	ENST00000425630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	LINC00200	HGNC	ENSG00000229205	tier1	-	-	41	0	0.00	20	4	16.67
PCDHB3	0	genome.wustl.edu	37	5	140482079	140482079	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	5	140482079	140482079	G	A	SNP	PCDHB3	ENST00000231130	human	ensembl	74_37	+1	known	missense	c.1846	p.G616S	0.778	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB3	HGNC	ENSG00000113205	tier1	-	-	215	0	0.00	160	32	16.67
RAB11FIP2	0	genome.wustl.edu	37	10	119765266	119765267	+	RNA	INS	-	-	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	10	119765266	119765267	-	T	INS	RAB11FIP2	ENST00000476207	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	RAB11FIP2	HGNC	ENSG00000107560	tier1			17	0	0.00	22	4	15.38
STX16-NPEPL1	0	genome.wustl.edu	37	20	57244444	57244444	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	20	57244444	57244444	C	G	SNP	STX16-NPEPL1	ENST00000530122	human	ensembl	74_37	+1	known	missense	c.491	p.S164W	1.000	pfam_Syntaxin_N,superfamily_t-SNARE	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX16-NPEPL1	HGNC	ENSG00000254995	tier1	-	-	105	0	0.00	91	41	31.06
DSCAM	0	genome.wustl.edu	37	21	42080608	42080608	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	21	42080608	42080608	G	T	SNP	DSCAM	ENST00000400454	human	ensembl	74_37	-1	known	missense	c.133	p.P45T	1.000	smart_Ig_sub2	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub2,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	DSCAM	HGNC	ENSG00000171587	tier1	-	-	49	0	0.00	45	25	35.21
COL27A1	0	genome.wustl.edu	37	9	117031280	117031281	+	RNA	INS	-	-	TGGTGT			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	9	117031280	117031281	-	TGGTGT	INS	COL27A1	ENST00000477421	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.010:0.009	-	-	-	no_errors	COL27A1	HGNC	ENSG00000196739	tier1			NA	NA	NA	NA	NA	NA
ABCA9	0	genome.wustl.edu	37	17	66986977	66986977	+	Splice_Site	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	66986977	66986977	C	T	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	splice_site	c.3837+1	e28+1	1.000	-	-	-	no_errors	ABCA9	HGNC	ENSG00000154258	tier1	-	-	70	0	0.00	75	24	24.24
SLC38A5	0	genome.wustl.edu	37	X	48318218	48318218	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	X	48318218	48318218	G	T	SNP	SLC38A5	ENST00000317669	human	ensembl	74_37	-1	known	missense	c.1113	p.F371L	1.000	pfam_AA_transpt_TM	pfam_AA_transpt_TM	-	no_errors	SLC38A5	HGNC	ENSG00000017483	tier1	-	-	75	0	0.00	41	4	8.89
FBXL16	0	genome.wustl.edu	37	16	747263	747265	+	In_Frame_Del	DEL	TGG	TGG	-			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	TGG	TGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	16	747263	747265	TGG	-	DEL	FBXL16	ENST00000324361	human	ensembl	74_37	-1	known	in_frame_del	c.143_141	p.CQ47in_frame_delW	1.000:1.000:1.000	NULL	superfamily_F-box_dom,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL16	HGNC	ENSG00000127585	tier1			8	0	0.00	6	3	33.33
DDB1	0	genome.wustl.edu	37	11	61067680	61067680	+	Silent	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	11	61067680	61067680	G	T	SNP	DDB1	ENST00000301764	human	ensembl	74_37	-1	known	silent	c.3351	p.G1117	1.000	NULL	pfam_Cleavage/polyA-sp_fac_asu_C	-	no_errors	DDB1	HGNC	ENSG00000167986	tier1	-	-	62	0	0.00	36	4	10.00
LAMA2	0	genome.wustl.edu	37	6	129634035	129634035	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	6	129634035	129634035	G	T	SNP	LAMA2	ENST00000421865	human	ensembl	74_37	+1	known	missense	c.3204	p.L1068F	0.978	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_B_type_IV,pfam_Laminin_II,superfamily_ConA-like_lec_gl_sf,superfamily_Galactose-bd-like,superfamily_t-SNARE,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA2	HGNC	ENSG00000196569	tier1	-	-	67	0	0.00	113	29	20.42
LOC101929974	0	genome.wustl.edu	37	12	131649621	131649621	+	RNA	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	12	131649621	131649621	G	A	SNP	LOC101929974	ENST00000376678	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	RP11-638F5.1	Clone_based_vega_gene	ENSG00000204603	tier1	rs199500836	-	32	0	0.00	25	7	21.88
ABCA9	0	genome.wustl.edu	37	17	66986978	66986978	+	Silent	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	66986978	66986978	C	T	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	silent	c.3837	p.E1279	1.000	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	tier1	-	-	69	0	0.00	73	24	24.49
CCR1	0	genome.wustl.edu	37	3	46245463	46245463	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	3	46245463	46245463	G	T	SNP	CCR1	ENST00000296140	human	ensembl	74_37	-1	known	nonsense	c.342	p.Y114*	0.000	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Chemokine_CCR1,prints_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR5,prints_NPY_rcpt,prints_ATII_rcpt	-	no_errors	CCR1	HGNC	ENSG00000163823	tier1	-	-	32	0	0.00	45	4	8.16
RNF113B	0	genome.wustl.edu	37	13	98828591	98828591	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	13	98828591	98828591	G	C	SNP	RNF113B	ENST00000267291	human	ensembl	74_37	-1	known	missense	c.900	p.I300M	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF113B	HGNC	ENSG00000139797	tier1	-	-	78	0	0.00	91	10	9.90
CTBP2	0	genome.wustl.edu	37	10	126727587	126727587	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	10	126727587	126727587	G	A	SNP	CTBP2	ENST00000337195	human	ensembl	74_37	-1	known	nonsense	c.37	p.R13*	1.000	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	tier1	-	-	35	0	0.00	40	4	9.09
TNFRSF10B	0	genome.wustl.edu	37	8	22888375	22888375	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	8	22888375	22888375	G	T	SNP	TNFRSF10B	ENST00000523504	human	ensembl	74_37	-1	known	missense	c.155	p.S52Y	0.000	NULL	NULL	-	no_errors	TNFRSF10B	HGNC	ENSG00000120889	tier1	-	-	20	0	0.00	10	4	28.57
GPS2	0	genome.wustl.edu	37	17	7216578	7216578	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	7216578	7216578	G	C	SNP	GPS2	ENST00000380728	human	ensembl	74_37	-1	known	missense	c.757	p.Q253E	1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	tier1	-	-	42	0	0.00	39	8	17.02
RNF212	0	genome.wustl.edu	37	4	1087327	1087328	+	In_Frame_Ins	INS	-	-	CTGCCCAGGCTGGAGCCAGCC			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	4	1087327	1087328	-	CTGCCCAGGCTGGAGCCAGCC	INS	RNF212	ENST00000333673	human	ensembl	74_37	-1	known	in_frame_ins	c.722_721	p.S241in_frame_insWLAPAWAA	0.085:0.000	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	tier1			NA	NA	NA	NA	NA	NA
NFE2L1	0	genome.wustl.edu	37	17	46128076	46128077	+	RNA	INS	-	-	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	46128076	46128077	-	A	INS	NFE2L1	ENST00000579481	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.003:0.035	-	-	-	no_errors	NFE2L1	HGNC	ENSG00000082641	tier1			28	0	0.00	28	3	9.68
ABCA9	0	genome.wustl.edu	37	17	66986980	66986980	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	66986980	66986980	C	T	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	missense	c.3835	p.E1279K	0.993	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	tier1	-	-	68	0	0.00	73	24	24.49
OCLN	0	genome.wustl.edu	37	5	68809856	68809856	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	5	68809856	68809856	A	G	SNP	OCLN	ENST00000355237	human	ensembl	74_37	+1	known	missense	c.811	p.M271V	1.000	pirsf_Occludin	pfam_Occludin_RNApol2_elong_fac_ELL,pfam_Marvel,pirsf_Occludin,prints_Occludin	-	no_errors	OCLN	HGNC	ENSG00000197822	tier1	-	-	103	0	0.00	106	51	32.48
PLXDC1	0	genome.wustl.edu	37	17	37309264	37309264	+	RNA	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	37309264	37309264	G	T	SNP	PLXDC1	ENST00000577941	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLXDC1	HGNC	ENSG00000161381	tier1	-	-	57	0	0.00	28	4	12.50
MUC5B	0	genome.wustl.edu	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	11	1266716	1266716	T	C	SNP	MUC5B	ENST00000447027	human	ensembl	74_37	+1	known	missense	c.8615	p.M2872T	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	tier1	rs200243273	-	153	1	0.65	18	2	10.00
ABCA9	0	genome.wustl.edu	37	17	66987021	66987021	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	66987021	66987021	C	T	SNP	ABCA9	ENST00000340001	human	ensembl	74_37	-1	known	missense	c.3794	p.R1265K	0.997	NULL	pfam_ABC_transporter-like,superfamily_P-loop_NTPase,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA9	HGNC	ENSG00000154258	tier1	-	-	75	0	0.00	69	27	27.84
DOPEY1	0	genome.wustl.edu	37	6	83877837	83877837	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	6	83877837	83877837	T	C	SNP	DOPEY1	ENST00000349129	human	ensembl	74_37	+1	known	missense	c.7349	p.I2450T	1.000	NULL	pfam_Dopey_N,superfamily_ARM-type_fold	-	no_errors	DOPEY1	HGNC	ENSG00000083097	tier1	-	-	47	0	0.00	99	21	17.50
FCGBP	0	genome.wustl.edu	37	19	40376983	40376983	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	19	40376983	40376983	G	T	SNP	FCGBP	ENST00000221347	human	ensembl	74_37	-1	known	missense	c.11439	p.N3813K	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EG-like_dom,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	tier1	-	-	45	0	0.00	22	5	18.52
NCKIPSD	0	genome.wustl.edu	37	3	48716029	48716029	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	3	48716029	48716029	G	A	SNP	NCKIPSD	ENST00000294129	human	ensembl	74_37	-1	known	missense	c.1933	p.R645W	1.000	pfam_DUF2013	pfam_DUF2013,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	NCKIPSD	HGNC	ENSG00000213672	tier1	rs36059909	-	42	0	0.00	21	4	16.00
ELTD1	0	genome.wustl.edu	37	1	79403555	79403555	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	1	79403555	79403555	T	C	SNP	ELTD1	ENST00000370742	human	ensembl	74_37	-1	known	missense	c.697	p.T233A	0.186	pfam_DUF3497	pfam_GPCR_2_secretin-like,pfam_DUF3497,pfam_GPS_dom,pfam_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF-like_Ca-bd_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	ELTD1	HGNC	ENSG00000162618	tier1	-	-	42	0	0.00	70	36	33.96
DPH6	0	genome.wustl.edu	37	15	35834677	35834677	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	15	35834677	35834677	G	A	SNP	DPH6	ENST00000256538	human	ensembl	74_37	-1	known	nonsense	c.55	p.Q19*	1.000	pfam_DUF71_dom,tigrfam_DUF71_dom	pfam_DUF71_dom,tigrfam_DUF71_dom	-	no_errors	DPH6	HGNC	ENSG00000134146	tier1	-	-	26	0	0.00	29	4	11.76
MYH7	0	genome.wustl.edu	37	14	23884311	23884311	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	14	23884311	23884311	G	A	SNP	MYH7	ENST00000355349	human	ensembl	74_37	-1	known	missense	c.5452	p.R1818W	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7	HGNC	ENSG00000092054	tier1	-	-	72	0	0.00	32	10	23.81
GATA5	0	genome.wustl.edu	37	20	61040892	61040892	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	20	61040892	61040892	G	T	SNP	GATA5	ENST00000252997	human	ensembl	74_37	-1	known	nonsense	c.911	p.S304*	0.999	pirsf_TF_GATA_4/5/6	pfam_GATA_N,pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA_4/5/6,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA5	HGNC	ENSG00000130700	tier1	-	-	32	0	0.00	11	3	21.43
BTBD10	0	genome.wustl.edu	37	11	13424802	13424803	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	11	13424802	13424803	TA	-	DEL	BTBD10	ENST00000278174	human	ensembl	74_37	-1	known	frame_shift_del	c.1030_1029	p.Y343fs	1.000:1.000	NULL	superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	BTBD10	HGNC	ENSG00000148925	tier1			107	0	0.00	76	88	53.66
CD99L2	0	genome.wustl.edu	37	X	149984546	149984546	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	X	149984546	149984546	A	T	SNP	CD99L2	ENST00000370377	human	ensembl	74_37	-1	known	missense	c.136	p.W46R	0.048	NULL	pfam_CD99L2	-	no_errors	CD99L2	HGNC	ENSG00000102181	tier1	-	-	113	0	0.00	100	57	36.31
CIITA	0	genome.wustl.edu	37	16	10971191	10971191	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	16	10971191	10971191	C	T	SNP	CIITA	ENST00000324288	human	ensembl	74_37	+1	known	missense	c.4	p.R2C	1.000	NULL	superfamily_P-loop_NTPase,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,prints_MHC_II_transact	-	no_errors	CIITA	HGNC	ENSG00000179583	tier1	-	-	69	0	0.00	33	32	49.23
LOC100133091	0	genome.wustl.edu	37	7	76256109	76256110	+	RNA	INS	-	-	GCGGTGTGGAGC			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	7	76256109	76256110	-	GCGGTGTGGAGC	INS	LOC100133091	ENST00000418663	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.011:0.010	-	-	-	no_errors	AC004980.7	Clone_based_vega_gene	ENSG00000205485	tier1			NA	NA	NA	NA	NA	NA
DNM1P47	0	genome.wustl.edu	37	15	102294455	102294455	+	RNA	SNP	A	A	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	15	102294455	102294455	A	C	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	117	1	0.84	73	9	10.98
SLC16A11	0	genome.wustl.edu	37	17	6946314	6946314	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	6946314	6946314	C	T	SNP	SLC16A11	ENST00000308009	human	ensembl	74_37	-1	known	missense	c.353	p.G118D	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A11	HGNC	ENSG00000174326	tier1	-	-	75	0	0.00	33	13	28.26
RBM25	0	genome.wustl.edu	37	14	73572607	73572608	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	14	73572607	73572608	AG	-	DEL	RBM25	ENST00000261973	human	ensembl	74_37	+1	known	frame_shift_del	c.1195_1196	p.E402fs	0.998:1.000	NULL	pfam_PWI_dom,pfam_RRM_dom,superfamily_PWI_dom,smart_RRM_dom,smart_PWI_dom,pfscan_RRM_dom	-	no_errors	RBM25	HGNC	ENSG00000119707	tier1			33	0	0.00	99	11	10.00
LRFN2	0	genome.wustl.edu	37	6	40400756	40400756	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	6	40400756	40400756	A	G	SNP	LRFN2	ENST00000338305	human	ensembl	74_37	-1	known	missense	c.97	p.S33P	1.000	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Fibronectin_type3,pfscan_Ig-like_dom	-	no_errors	LRFN2	HGNC	ENSG00000156564	tier1	-	-	56	0	0.00	45	12	21.05
RB1	0	genome.wustl.edu	37	13	48955550	48955556	+	Frame_Shift_Del	DEL	CGAATCA	CGAATCA	-			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	CGAATCA	CGAATCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	13	48955550	48955556	CGAATCA	-	DEL	RB1	ENST00000267163	human	ensembl	74_37	+1	known	frame_shift_del	c.1666_1672	p.R556fs	1.000:1.000:0.999:1.000:1.000:1.000:1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_RB_C,pfam_RB_A,pfam_RB_B,pfam_RB_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	tier1			NA	NA	NA	NA	NA	NA
FRMPD4	0	genome.wustl.edu	37	X	12736510	12736510	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	X	12736510	12736510	C	T	SNP	FRMPD4	ENST00000380682	human	ensembl	74_37	+1	known	missense	c.3565	p.R1189C	0.906	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_dom	-	no_errors	FRMPD4	HGNC	ENSG00000169933	tier1	-	-	59	0	0.00	53	11	17.19
IFNE	0	genome.wustl.edu	37	9	21481472	21481472	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	9	21481472	21481472	T	-	DEL	IFNE	ENST00000448696	human	ensembl	74_37	-1	known	frame_shift_del	c.222	p.G75fs	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNE	HGNC	ENSG00000184995	tier1			22	0	0.00	19	2	9.52
ZNF891	0	genome.wustl.edu	37	12	133697279	133697279	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	12	133697279	133697279	C	A	SNP	ZNF891	ENST00000397313	human	ensembl	74_37	-1	known	missense	c.1226	p.C409F	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF891	HGNC	ENSG00000214029	tier1	-	-	105	0	0.00	30	33	52.38
QSOX2	0	genome.wustl.edu	37	9	139100668	139100668	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	9	139100668	139100668	T	A	SNP	QSOX2	ENST00000358701	human	ensembl	74_37	-1	known	missense	c.2003	p.Y668F	1.000	NULL	pfam_ERV/ALR_sulphydryl_oxidase,pfam_Thioredoxin_domain,superfamily_ERV/ALR_sulphydryl_oxidase,superfamily_Thioredoxin-like_fold	-	no_errors	QSOX2	HGNC	ENSG00000165661	tier1	-	-	70	0	0.00	80	31	27.93
NDST3	0	genome.wustl.edu	37	4	118975296	118975296	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	4	118975296	118975296	C	A	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	missense	c.231	p.D77E	0.876	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100	tier1	-	-	37	0	0.00	58	9	13.43
NOP9	0	genome.wustl.edu	37	14	24769849	24769850	+	In_Frame_Ins	INS	-	-	GAG			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	14	24769849	24769850	-	GAG	INS	NOP9	ENST00000267425	human	ensembl	74_37	+1	known	in_frame_ins	c.483_484	p.165in_frame_insE	0.000:0.015	superfamily_ARM-type_fold	superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt	-	no_errors	NOP9	HGNC	ENSG00000196943	tier1			22	0	0.00	24	5	17.24
RANBP10	0	genome.wustl.edu	37	16	67763633	67763633	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	16	67763633	67763633	G	A	SNP	RANBP10	ENST00000317506	human	ensembl	74_37	-1	known	missense	c.1097	p.P366L	1.000	NULL	pfam_SPRY_rcpt,pfam_CTLH/CRA,pfam_LisH_dimerisation_subgr,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,smart_CTLH_C,smart_CRA_dom,pfscan_B30.2/SPRY,pfscan_LisH_dimerisation,pfscan_CTLH_C	-	no_errors	RANBP10	HGNC	ENSG00000141084	tier1	-	-	95	0	0.00	23	13	36.11
GPS2	0	genome.wustl.edu	37	17	7216153	7216153	+	Silent	SNP	G	G	C			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	7216153	7216153	G	C	SNP	GPS2	ENST00000380728	human	ensembl	74_37	-1	known	silent	c.906	p.G302	1.000	NULL	NULL	-	no_errors	GPS2	HGNC	ENSG00000132522	tier1	-	-	43	0	0.00	21	10	32.26
POMGNT2	0	genome.wustl.edu	37	3	43121207	43121207	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	3	43121207	43121207	C	A	SNP	POMGNT2	ENST00000344697	human	ensembl	74_37	-1	known	missense	c.1717	p.A573S	1.000	superfamily_Fibronectin_type3	pfam_Glycosyltransferase_AER61,superfamily_Fibronectin_type3	-	no_errors	POMGNT2	HGNC	ENSG00000144647	tier1	-	-	47	0	0.00	46	4	8.00
FOLH1	0	genome.wustl.edu	37	11	49208258	49208258	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	11	49208258	49208258	T	A	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	nonsense	c.577	p.K193*	0.996	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	tier1	-	-	83	0	0.00	155	33	17.55
FAM64A	0	genome.wustl.edu	37	17	6350862	6350862	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	6350862	6350862	C	T	SNP	FAM64A	ENST00000250056	human	ensembl	74_37	+1	known	missense	c.374	p.A125V	0.001	pfam_DUF1466	pfam_DUF1466	-	no_errors	FAM64A	HGNC	ENSG00000129195	tier1	-	-	74	0	0.00	48	42	45.65
DOCK7	0	genome.wustl.edu	37	1	62941103	62941104	+	RNA	INS	-	-	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	1	62941103	62941104	-	A	INS	DOCK7	ENST00000467758	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.057	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641	tier1			23	0	0.00	22	2	8.33
ARAP3	0	genome.wustl.edu	37	5	141059359	141059359	+	Silent	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	5	141059359	141059359	G	T	SNP	ARAP3	ENST00000239440	human	ensembl	74_37	-1	known	silent	c.555	p.P185	0.991	NULL	pfam_RhoGAP_dom,pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ras-assoc,pfam_SAM_2,pfam_SAM_type1,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP3	HGNC	ENSG00000120318	tier1	-	-	60	0	0.00	61	11	15.28
FAM64A	0	genome.wustl.edu	37	17	6350925	6350925	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	17	6350925	6350925	C	T	SNP	FAM64A	ENST00000250056	human	ensembl	74_37	+1	known	missense	c.437	p.A146V	0.142	pfam_DUF1466	pfam_DUF1466	-	no_errors	FAM64A	HGNC	ENSG00000129195	tier1	-	-	95	0	0.00	58	39	39.80
SLC9C1	0	genome.wustl.edu	37	3	111887771	111887771	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	3	111887771	111887771	G	A	SNP	SLC9C1	ENST00000305815	human	ensembl	74_37	-1	known	nonsense	c.3190	p.R1064*	0.631	NULL	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C1	HGNC	ENSG00000172139	tier1	rs202229232	-	29	0	0.00	52	5	8.77
LRRIQ1	0	genome.wustl.edu	37	12	85638644	85638644	+	Silent	SNP	A	A	G			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	12	85638644	85638644	A	G	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	silent	c.5094	p.R1698	1.000	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	tier1	-	-	41	0	0.00	32	24	42.86
ELMO2	0	genome.wustl.edu	37	20	45000515	45000515	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	20	45000515	45000515	A	T	SNP	ELMO2	ENST00000439931	human	ensembl	74_37	-1	known	missense	c.1546	p.Y516N	1.000	NULL	pfam_DUF3361,pfam_Engulfment_cell_motility_ELMO,superfamily_ARM-type_fold	-	no_errors	ELMO2	HGNC	ENSG00000062598	tier1	-	-	19	0	0.00	38	13	25.00
ARHGAP35	0	genome.wustl.edu	37	19	47424544	47424544	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	19	47424544	47424544	G	T	SNP	ARHGAP35	ENST00000404338	human	ensembl	74_37	+1	known	missense	c.2612	p.R871L	1.000	NULL	pfam_RhoGAP_dom,pfam_Small_GTPase,pfam_FF_domain,superfamily_Rho_GTPase_activation_prot,superfamily_P-loop_NTPase,superfamily_FF_domain,smart_FF_domain,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP35	HGNC	ENSG00000160007	tier1	-	-	82	0	0.00	79	48	37.80
FMN1	0	genome.wustl.edu	37	15	33445254	33445254	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	15	33445254	33445254	G	T	SNP	FMN1	ENST00000320930	human	ensembl	74_37	-1	known	missense	c.1862	p.P621H	0.997	NULL	NULL	-	no_errors	FMN1	HGNC	ENSG00000248905	tier1	-	-	39	0	0.00	40	4	9.09
EMP1	0	genome.wustl.edu	37	12	13364426	13364427	+	RNA	INS	-	-	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	12	13364426	13364427	-	A	INS	EMP1	ENST00000542289	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	EMP1	HGNC	ENSG00000134531	tier1			57	0	0.00	41	4	8.89
SLC15A1	0	genome.wustl.edu	37	13	99338480	99338480	+	Silent	SNP	C	C	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	13	99338480	99338480	C	A	SNP	SLC15A1	ENST00000376503	human	ensembl	74_37	-1	known	silent	c.1899	p.V633	0.996	superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	pfam_POT_fam,superfamily_MFS_dom_general_subst_transpt,tigrfam_Oligopep_transport	-	no_errors	SLC15A1	HGNC	ENSG00000088386	tier1	-	-	57	0	0.00	44	4	8.33
HOXA1	0	genome.wustl.edu	37	7	27135319	27135319	+	Silent	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	7	27135319	27135319	G	A	SNP	HOXA1	ENST00000343060	human	ensembl	74_37	-1	known	silent	c.213	p.H71	0.999	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,prints_Homeobox_metazoa,pfscan_Homeobox_dom	-	no_errors	HOXA1	HGNC	ENSG00000105991	tier1	rs2074398	-	67	0	0.00	95	9	8.65
BCKDHA	0	genome.wustl.edu	37	19	41928996	41928996	+	Silent	SNP	G	G	T			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	19	41928996	41928996	G	T	SNP	BCKDHA	ENST00000595085	human	ensembl	74_37	+1	known	silent	c.1191	p.R397	0.877	pfam_DH_E1	pfam_DH_E1,pfam_Transketolase_N	-	no_errors	BCKDHA	HGNC	ENSG00000248098	tier1	-	-	41	0	0.00	51	5	8.93
GRM4	0	genome.wustl.edu	37	6	34100900	34100900	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	6	34100900	34100900	G	A	SNP	GRM4	ENST00000374181	human	ensembl	74_37	-1	known	missense	c.374	p.A125V	1.000	pfam_ANF_lig-bd_rcpt,superfamily_Peripla_BP_I	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Peripla_BP_I,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_4,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_GABA_rcpt_B	-	no_errors	GRM4	HGNC	ENSG00000124493	tier1	-	-	78	0	0.00	67	12	15.19
XRN1	0	genome.wustl.edu	37	3	142051879	142051879	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	3	142051879	142051879	T	-	DEL	XRN1	ENST00000264951	human	ensembl	74_37	-1	known	frame_shift_del	c.3992	p.N1331fs	0.876	pirsf_5_3_exoribonuclease_1	pfam_Put_53exo,pirsf_5_3_exoribonuclease_1	-	no_errors	XRN1	HGNC	ENSG00000114127	tier1			28	0	0.00	56	17	23.29
FOLH1	0	genome.wustl.edu	37	11	49208259	49208259	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2T-01A-11D-A387-09	TCGA-DX-AB2T-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	38c27e85-9f63-432f-9f40-f13eb3b26250	134d8858-9c2e-406f-8d0c-2fc7433f4cb5	11	49208259	49208259	C	A	SNP	FOLH1	ENST00000256999	human	ensembl	74_37	-1	known	missense	c.576	p.M192I	0.997	pfam_Protease-assoc_domain	pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom	-	no_errors	FOLH1	HGNC	ENSG00000086205	tier1	-	-	83	0	0.00	156	33	17.46
