Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
PALLD	0	genome.wustl.edu	37	4	169589400	169589400	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	4	169589400	169589400	G	T	SNP	PALLD	ENST00000261509	human	ensembl	74_37	+1	known	missense	c.968	p.G323V	0.961	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	PALLD	HGNC	ENSG00000129116	tier1	-	-	63	0	0.00	37	4	9.76
ZFHX4	0	genome.wustl.edu	37	8	77767256	77767256	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	8	77767256	77767256	A	G	SNP	ZFHX4	ENST00000521891	human	ensembl	74_37	+1	known	missense	c.8099	p.N2700S	1.000	pfscan_Znf_C2H2	pfam_Homeobox_dom,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeobox_dom,pfscan_Homeobox_dom,pfscan_Znf_C2H2	-	no_errors	ZFHX4	HGNC	ENSG00000091656	tier1	-	-	52	0	0.00	76	34	30.91
CPAMD8	0	genome.wustl.edu	37	19	17036138	17036138	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	19	17036138	17036138	G	A	SNP	CPAMD8	ENST00000443236	human	ensembl	74_37	-1	known	missense	c.3556	p.R1186W	0.983	pfam_MacrogloblnA2_thiol-ester-bond,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal_dom,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Kazal_dom	-	no_errors	CPAMD8	HGNC	ENSG00000160111	tier1	-	-	78	0	0.00	17	25	59.52
TTF1	0	genome.wustl.edu	37	9	135267466	135267466	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	9	135267466	135267466	T	G	SNP	TTF1	ENST00000334270	human	ensembl	74_37	-1	known	missense	c.1984	p.S662R	0.000	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	TTF1	HGNC	ENSG00000125482	tier1	-	-	52	0	0.00	30	16	34.78
PTPRT	0	genome.wustl.edu	37	20	41420099	41420099	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	20	41420099	41420099	G	T	SNP	PTPRT	ENST00000373198	human	ensembl	74_37	-1	known	missense	c.222	p.F74L	1.000	pfam_MAM_dom,superfamily_ConA-like_lec_gl_sf,smart_MAM_dom,pfscan_MAM_dom,prints_MAM_dom	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-sp_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,pfscan_Ig-like_dom,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom	-	no_errors	PTPRT	HGNC	ENSG00000196090	tier1	-	-	40	0	0.00	24	3	11.11
NACC2	0	genome.wustl.edu	37	9	138903668	138903668	+	Silent	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	9	138903668	138903668	G	A	SNP	NACC2	ENST00000277554	human	ensembl	74_37	-1	known	silent	c.1458	p.A486	0.021	NULL	pfam_BTB_POZ,pfam_BEN_domain,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	NACC2	HGNC	ENSG00000148411	tier1	-	-	44	0	0.00	9	7	43.75
XPC	0	genome.wustl.edu	37	3	14199838	14199838	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	3	14199838	14199838	G	T	SNP	XPC	ENST00000285021	human	ensembl	74_37	-1	known	missense	c.1545	p.S515R	0.000	pfam_Rad4/PNGase_transGLS-fold,tigrfam_DNA_repair_Rad4_subgr	pfam_Rad4/PNGase_transGLS-fold,pfam_Rad4_beta-hairpin_dom3,pfam_Rad4_beta-hairpin_dom2,pfam_Rad4_beta-hairpin_dom1,tigrfam_DNA_repair_Rad4_subgr	-	no_errors	XPC	HGNC	ENSG00000154767	tier1	-	-	52	0	0.00	12	3	20.00
SMURF1	0	genome.wustl.edu	37	7	98633223	98633223	+	Silent	SNP	C	C	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	7	98633223	98633223	C	A	SNP	SMURF1	ENST00000361125	human	ensembl	74_37	-1	known	silent	c.2004	p.T668	0.954	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_dom,pfam_C2_dom,superfamily_HECT,superfamily_C2_dom,superfamily_WW_dom,smart_C2_dom,smart_WW_dom,smart_HECT,pfscan_HECT,pfscan_C2_dom,pfscan_WW_dom	-	no_errors	SMURF1	HGNC	ENSG00000198742	tier1	-	-	56	0	0.00	10	28	73.68
ENSG00000262712	0	genome.wustl.edu	37	16	4386613	4386613	+	RNA	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	16	4386613	4386613	G	A	SNP	ENSG00000262712	ENST00000574705	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	RP11-295D4.1	Clone_based_vega_gene	ENSG00000262712	tier1	-	-	53	0	0.00	19	14	42.42
KIAA2018	0	genome.wustl.edu	37	3	113377482	113377482	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	3	113377482	113377482	T	-	DEL	KIAA2018	ENST00000316407	human	ensembl	74_37	-1	known	frame_shift_del	c.3047	p.N1016fs	0.827	NULL	pfam_bHLH_dom,superfamily_bHLH_dom,smart_bHLH_dom,pfscan_bHLH_dom	-	no_errors	KIAA2018	HGNC	ENSG00000176542	tier1			32	0	0.00	30	4	11.76
EBF1	0	genome.wustl.edu	37	5	158500455	158500465	+	Frame_Shift_Del	DEL	TTCTTGTCACA	TTCTTGTCACA	-			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	TTCTTGTCACA	TTCTTGTCACA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	5	158500455	158500465	TTCTTGTCACA	-	DEL	EBF1	ENST00000313708	human	ensembl	74_37	-1	known	frame_shift_del	c.503_493	p.C165fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	pfam_IPT,superfamily_Ig_E-set,superfamily_bHLH_dom,smart_IPT	-	no_errors	EBF1	HGNC	ENSG00000164330	tier1			NA	NA	NA	NA	NA	NA
MGEA5	0	genome.wustl.edu	37	10	103558659	103558659	+	Silent	SNP	T	T	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	10	103558659	103558659	T	C	SNP	MGEA5	ENST00000361464	human	ensembl	74_37	-1	known	silent	c.1749	p.Q583	1.000	NULL	pfam_Beta-N-acetylglucosaminidase,superfamily_Glycoside_hydrolase_SF,superfamily_Acyl_CoA_acyltransferase	-	no_errors	MGEA5	HGNC	ENSG00000198408	tier1	-	-	49	0	0.00	35	42	54.55
NKX2-5	0	genome.wustl.edu	37	5	172661847	172661847	+	Silent	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	5	172661847	172661847	G	T	SNP	NKX2-5	ENST00000329198	human	ensembl	74_37	-1	known	silent	c.240	p.A80	0.997	NULL	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_Homeobox_metazoa	-	no_errors	NKX2-5	HGNC	ENSG00000183072	tier1	-	-	77	0	0.00	34	4	10.53
SHOX	0	genome.wustl.edu	37	X	601772	601772	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	601772	601772	C	T	SNP	SHOX	ENST00000381578	human	ensembl	74_37	+1	known	nonsense	c.583	p.R195*	1.000	NULL	pfam_Homeobox_dom,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_OAR_dom,pfscan_Homeobox_dom,prints_HTH_motif	-	no_errors	SHOX	HGNC	ENSG00000185960	tier1	-	-	146	0	0.00	60	34	36.17
MIR548H4	0	genome.wustl.edu	37	8	26906434	26906438	+	RNA	DEL	TAAAG	TAAAG	-			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	TAAAG	TAAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	8	26906434	26906438	TAAAG	-	DEL	MIR548H4	ENST00000408689	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.003:0.006:0.031:0.044:0.062	-	-	-	no_errors	MIR548H4	HGNC	ENSG00000221616	tier1			NA	NA	NA	NA	NA	NA
RXRA	0	genome.wustl.edu	37	9	137330534	137330534	+	RNA	SNP	G	G	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	9	137330534	137330534	G	C	SNP	RXRA	ENST00000356384	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RXRA	HGNC	ENSG00000186350	tier1	-	-	208	0	0.00	68	85	55.19
MADD	0	genome.wustl.edu	37	11	47333317	47333317	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	11	47333317	47333317	G	A	SNP	MADD	ENST00000311027	human	ensembl	74_37	+1	known	missense	c.4193	p.R1398H	1.000	NULL	pfam_DENN_dom,pfam_uDENN_dom,pfam_dDENN_dom,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom	-	no_errors	MADD	HGNC	ENSG00000110514	tier1	-	-	73	0	0.00	45	4	8.16
TMCC2	0	genome.wustl.edu	37	1	205238479	205238479	+	Silent	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	205238479	205238479	G	A	SNP	TMCC2	ENST00000358024	human	ensembl	74_37	+1	known	silent	c.1149	p.G383	0.081	pfam_Predicted_TM_coiled-coil_2	pfam_Predicted_TM_coiled-coil_2,superfamily_t-SNARE	-	no_errors	TMCC2	HGNC	ENSG00000133069	tier1	-	-	98	0	0.00	13	3	18.75
LOC729603	0	genome.wustl.edu	37	6	160515039	160515039	+	RNA	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	6	160515039	160515039	G	A	SNP	LOC729603	ENST00000569097	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	RP11-288H12.3	Clone_based_vega_gene	ENSG00000213073	tier1	-	-	35	0	0.00	18	3	14.29
PPIL6	0	genome.wustl.edu	37	6	109721356	109721356	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	6	109721356	109721356	G	T	SNP	PPIL6	ENST00000521072	human	ensembl	74_37	-1	known	missense	c.706	p.P236T	0.818	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom	pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom	-	no_errors	PPIL6	HGNC	ENSG00000185250	tier1	-	-	79	0	0.00	42	4	8.70
SCRIB	0	genome.wustl.edu	37	8	144894510	144894510	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	8	144894510	144894510	G	T	SNP	SCRIB	ENST00000320476	human	ensembl	74_37	-1	known	missense	c.832	p.L278M	0.925	NULL	pfam_PDZ,pfam_Leu-rich_rpt,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	SCRIB	HGNC	ENSG00000180900	tier1	-	-	86	0	0.00	45	4	8.16
SVIL	0	genome.wustl.edu	37	10	29756774	29756774	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	10	29756774	29756774	G	T	SNP	SVIL	ENST00000355867	human	ensembl	74_37	-1	known	missense	c.5874	p.S1958R	1.000	smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	SVIL	HGNC	ENSG00000197321	tier1	-	-	40	0	0.00	21	4	16.00
PDE4B	0	genome.wustl.edu	37	1	66732400	66732400	+	RNA	DEL	A	A	-			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	66732400	66732400	A	-	DEL	PDE4B	ENST00000371048	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PDE4B	HGNC	ENSG00000184588	tier1			39	0	0.00	18	4	18.18
KIAA0907	0	genome.wustl.edu	37	1	155886422	155886423	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	155886422	155886423	CT	-	DEL	KIAA0907	ENST00000368321	human	ensembl	74_37	-1	known	frame_shift_del	c.1547_1546	p.R516fs	1.000:1.000	NULL	NULL	-	no_errors	KIAA0907	HGNC	ENSG00000132680	tier1			54	0	0.00	25	3	10.71
CCDC18	0	genome.wustl.edu	37	1	93691986	93691986	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	93691986	93691986	T	G	SNP	CCDC18	ENST00000557479	human	ensembl	74_37	+1	known	missense	c.2626	p.L876V	0.946	NULL	superfamily_Prefoldin,superfamily_tRNA-bd_arm	-	no_errors	CCDC18	HGNC	ENSG00000122483	tier1	-	-	95	0	0.00	34	112	76.71
RET	0	genome.wustl.edu	37	10	43615162	43615162	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	10	43615162	43615162	C	A	SNP	RET	ENST00000355710	human	ensembl	74_37	+1	known	nonsense	c.2576	p.S859*	1.000	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	tier1	-	-	71	0	0.00	16	9	36.00
MEGF6	0	genome.wustl.edu	37	1	3425216	3425216	+	Silent	SNP	C	C	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	3425216	3425216	C	T	SNP	MEGF6	ENST00000356575	human	ensembl	74_37	-1	known	silent	c.1566	p.L522	1.000	smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF_laminin,pfam_EGF-like_Ca-bd_dom,superfamily_Growth_fac_rcpt_N_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,smart_EGF_laminin,pfscan_EG-like_dom,pfscan_EMI_domain	-	no_errors	MEGF6	HGNC	ENSG00000162591	tier1	-	-	103	0	0.00	5	22	81.48
ATRX	0	genome.wustl.edu	37	X	76849184	76849184	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	76849184	76849184	T	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	missense	c.6092	p.E2031V	1.000	superfamily_P-loop_NTPase,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	91	0	0.00	79	51	39.23
H1FNT	0	genome.wustl.edu	37	12	48723491	48723491	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	12	48723491	48723491	G	C	SNP	H1FNT	ENST00000335017	human	ensembl	74_37	+1	known	missense	c.417	p.E139D	0.000	NULL	NULL	-	no_errors	H1FNT	HGNC	ENSG00000187166	tier1	-	-	14	0	0.00	1	8	88.89
LY6G6F	0	genome.wustl.edu	37	6	31675750	31675750	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	6	31675750	31675750	G	C	SNP	LY6G6F	ENST00000556581	human	ensembl	74_37	+1	known	missense	c.485	p.G162A	0.991	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	-	no_errors	LY6G6F	HGNC	ENSG00000204424	tier1	-	-	55	0	0.00	26	18	40.91
PIK3C2G	0	genome.wustl.edu	37	12	18491389	18491390	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	12	18491389	18491390	-	A	INS	PIK3C2G	ENST00000538779	human	ensembl	74_37	+1	known	frame_shift_ins	c.1302_1303	p.I436fs	0.996:0.999	NULL	pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_dom,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_dom,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3C2G	HGNC	ENSG00000139144	tier1			50	0	0.00	103	15	12.71
OR51Q1	0	genome.wustl.edu	37	11	5444355	5444355	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	11	5444355	5444355	C	T	SNP	OR51Q1	ENST00000300778	human	ensembl	74_37	+1	known	missense	c.925	p.L309F	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51Q1	HGNC	ENSG00000167360	tier1	-	-	23	0	0.00	10	5	33.33
ANKRD49	0	genome.wustl.edu	37	11	94230119	94230120	+	Frame_Shift_Ins	INS	-	-	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	11	94230119	94230120	-	A	INS	ANKRD49	ENST00000534911	human	ensembl	74_37	+1	known	frame_shift_ins	c.260_261	p.K91fs	1.000:1.000	NULL	NULL	-	no_errors	ANKRD49	HGNC	ENSG00000168876	tier1			26	0	0.00	48	6	11.11
ANK1	0	genome.wustl.edu	37	8	41545745	41545745	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	8	41545745	41545745	G	T	SNP	ANK1	ENST00000396942	human	ensembl	74_37	-1	known	missense	c.4187	p.S1396Y	0.041	superfamily_DEATH-like_dom,smart_Death_domain	pfam_Ankyrin_rpt,pfam_ZU5,pfam_Death_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_DEATH-like_dom,smart_Ankyrin_rpt,smart_ZU5,smart_Death_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Death_domain,pfscan_ZU5,prints_Ankyrin_rpt	-	no_errors	ANK1	HGNC	ENSG00000029534	tier1	-	-	52	0	0.00	18	4	18.18
GLT8D2	0	genome.wustl.edu	37	12	104396990	104396990	+	Silent	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	12	104396990	104396990	G	T	SNP	GLT8D2	ENST00000360814	human	ensembl	74_37	-1	known	silent	c.207	p.I69	1.000	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D2	HGNC	ENSG00000120820	tier1	-	-	63	0	0.00	8	34	80.95
ZMYM3	0	genome.wustl.edu	37	X	70469941	70469941	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	70469941	70469941	G	A	SNP	ZMYM3	ENST00000373988	human	ensembl	74_37	-1	known	missense	c.1192	p.P398S	0.996	NULL	pfam_Znf_MYM,pfam_DUF3504,smart_TRASH_dom	-	no_errors	ZMYM3	HGNC	ENSG00000147130	tier1	-	-	73	0	0.00	10	8	44.44
TRO	0	genome.wustl.edu	37	X	54950979	54950979	+	Silent	SNP	A	A	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	54950979	54950979	A	G	SNP	TRO	ENST00000173898	human	ensembl	74_37	+1	known	silent	c.1332	p.L444	0.993	pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	TRO	HGNC	ENSG00000067445	tier1	-	-	62	0	0.00	24	23	48.94
PRAMEF20	0	genome.wustl.edu	37	1	13743010	13743010	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	13743010	13743010	G	C	SNP	PRAMEF20	ENST00000316412	human	ensembl	74_37	+1	known	missense	c.199	p.G67R	0.015	NULL	NULL	-	no_errors	PRAMEF20	HGNC	ENSG00000204478	tier1	-	-	157	0	0.00	86	28	24.56
ZNF833P	0	genome.wustl.edu	37	19	11797000	11797000	+	RNA	SNP	G	G	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	19	11797000	11797000	G	C	SNP	ZNF833P	ENST00000344893	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.095	-	-	-	no_errors	ZNF833P	HGNC	ENSG00000197332	tier1	-	-	64	0	0.00	19	67	77.91
PASK	0	genome.wustl.edu	37	2	242054559	242054559	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	2	242054559	242054559	G	A	SNP	PASK	ENST00000358649	human	ensembl	74_37	-1	known	nonsense	c.3232	p.Q1078*	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,superfamily_PAS,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	tier1	-	-	24	0	0.00	9	5	35.71
POTEM	0	genome.wustl.edu	37	14	20012890	20012890	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	14	20012890	20012890	A	T	SNP	POTEM	ENST00000547722	human	ensembl	74_37	-1	known	missense	c.866	p.L289Q	0.017	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEM	HGNC	ENSG00000187537	tier1	-	-	21	0	0.00	39	16	29.09
CAPZB	0	genome.wustl.edu	37	1	19683234	19683234	+	Silent	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	19683234	19683234	G	A	SNP	CAPZB	ENST00000433834	human	ensembl	74_37	-1	known	silent	c.570	p.S190	0.976	pfam_CapZ_beta	pfam_CapZ_beta,prints_CapZ_beta	-	no_errors	CAPZB	HGNC	ENSG00000077549	tier1	-	-	59	0	0.00	44	4	8.33
MUC4	0	genome.wustl.edu	37	3	195510015	195510015	+	Silent	SNP	A	A	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	3	195510015	195510015	A	G	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	silent	c.8436	p.G2812	0.287	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	187	0	0.00	18	8	29.63
KANK1	0	genome.wustl.edu	37	9	734665	734666	+	RNA	INS	-	-	AA			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	9	734665	734666	-	AA	INS	KANK1	ENST00000489369	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	KANK1	HGNC	ENSG00000107104	tier1			46	0	0.00	34	3	8.11
LOXHD1	0	genome.wustl.edu	37	18	44139448	44139448	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	18	44139448	44139448	T	C	SNP	LOXHD1	ENST00000536736	human	ensembl	74_37	-1	known	missense	c.3179	p.K1060R	1.000	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	pfam_PLAT/LH2_dom,superfamily_Lipase_LipOase,smart_PLAT/LH2_dom,pfscan_PLAT/LH2_dom	-	no_errors	LOXHD1	HGNC	ENSG00000167210	tier1	-	-	101	0	0.00	6	11	64.71
KDM4A	0	genome.wustl.edu	37	1	44156546	44156546	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	44156546	44156546	G	T	SNP	KDM4A	ENST00000372396	human	ensembl	74_37	+1	known	nonsense	c.2068	p.G690*	0.000	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	tier1	-	-	113	0	0.00	44	4	8.33
PAPOLA	0	genome.wustl.edu	37	14	97022235	97022235	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	14	97022235	97022235	G	T	SNP	PAPOLA	ENST00000216277	human	ensembl	74_37	+1	known	missense	c.1716	p.Q572H	1.000	pirsf_PolyA_polymerase	pfam_PolA_pol_cen_dom,pfam_PolA_pol_RNA-bd_dom,pfam_Nucleotidyltransferase,superfamily_NuclTrfase_I_C,pirsf_PolyA_polymerase	-	no_errors	PAPOLA	HGNC	ENSG00000090060	tier1	-	-	81	0	0.00	36	4	10.00
ARHGAP31	0	genome.wustl.edu	37	3	119099802	119099802	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	3	119099802	119099802	G	T	SNP	ARHGAP31	ENST00000264245	human	ensembl	74_37	+1	known	missense	c.400	p.V134F	1.000	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	ARHGAP31	HGNC	ENSG00000031081	tier1	-	-	55	0	0.00	36	4	10.00
GAB3	0	genome.wustl.edu	37	X	153906237	153906237	+	RNA	SNP	C	C	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	153906237	153906237	C	T	SNP	GAB3	ENST00000496390	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	GAB3	HGNC	ENSG00000160219	tier1	-	-	14	0	0.00	10	4	28.57
ZNF804A	0	genome.wustl.edu	37	2	185803515	185803515	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	2	185803515	185803515	T	A	SNP	ZNF804A	ENST00000302277	human	ensembl	74_37	+1	known	missense	c.3392	p.F1131Y	1.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804A	HGNC	ENSG00000170396	tier1	-	-	38	0	0.00	14	4	22.22
MAP1A	0	genome.wustl.edu	37	15	43820411	43820411	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	15	43820411	43820411	T	A	SNP	MAP1A	ENST00000399453	human	ensembl	74_37	+1	known	missense	c.6740	p.L2247Q	0.972	NULL	NULL	-	no_errors	MAP1A	HGNC	ENSG00000166963	tier1	-	-	143	0	0.00	41	22	34.38
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	rs28934578	-	30	0	0.00	3	18	85.71
GOLGA6L7P	0	genome.wustl.edu	37	15	29090545	29090545	+	RNA	SNP	C	C	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	15	29090545	29090545	C	G	SNP	GOLGA6L7P	ENST00000569815	human	ensembl	74_37	-1	putative	rna	NULL	NULL	0.028	-	-	-	no_errors	GOLGA6L7P	HGNC	ENSG00000261649	tier1	-	-	26	0	0.00	2	7	77.78
OR6C76	0	genome.wustl.edu	37	12	55820114	55820114	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	12	55820114	55820114	T	C	SNP	OR6C76	ENST00000328314	human	ensembl	74_37	+1	known	missense	c.77	p.F26S	0.865	prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6C76	HGNC	ENSG00000185821	tier1	-	-	50	0	0.00	6	37	86.05
AGTR2	0	genome.wustl.edu	37	X	115304619	115304619	+	Silent	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	115304619	115304619	G	T	SNP	AGTR2	ENST00000371906	human	ensembl	74_37	+1	known	silent	c.1086	p.V362	0.001	NULL	pfam_GPCR_Rhodpsn,prints_ATII_AT2_rcpt,prints_GPCR_Rhodpsn,prints_ATII_rcpt,prints_Brdyknn_rcpt,prints_Chemokine_rcpt,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	AGTR2	HGNC	ENSG00000180772	tier1	-	-	63	0	0.00	32	4	11.11
SNORD3B-1	0	genome.wustl.edu	37	17	18965294	18965294	+	RNA	SNP	C	C	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	17	18965294	18965294	C	T	SNP	SNORD3B-1	ENST00000363359	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.075	-	-	-	no_errors	SNORD3B-1	HGNC	ENSG00000265185	tier1	-	-	23	0	0.00	20	7	25.93
TRIM58	0	genome.wustl.edu	37	1	248039664	248039664	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	248039664	248039664	G	T	SNP	TRIM58	ENST00000366481	human	ensembl	74_37	+1	known	missense	c.1334	p.R445L	0.350	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM58	HGNC	ENSG00000162722	tier1	-	-	114	0	0.00	4	18	81.82
ARL4D	0	genome.wustl.edu	37	17	41477378	41477378	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	17	41477378	41477378	G	T	SNP	ARL4D	ENST00000320033	human	ensembl	74_37	+1	known	missense	c.278	p.R93L	0.996	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_SRP_receptor_beta_su,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase_ARF/SAR,pfam_Small_GTPase,pfam_MIRO-like,pfam_SRP_receptor_beta_su,pfam_EF_GTP-bd_dom,pfam_Gtr1_RagA,superfamily_P-loop_NTPase,smart_Small_GTPase_ARF,smart_Small_GTPase_SAR1,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,prints_Small_GTPase_ARF/SAR,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	ARL4D	HGNC	ENSG00000175906	tier1	-	-	66	0	0.00	40	4	9.09
SPATA5	0	genome.wustl.edu	37	4	123868616	123868616	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	4	123868616	123868616	G	T	SNP	SPATA5	ENST00000274008	human	ensembl	74_37	+1	known	missense	c.1687	p.D563Y	1.000	superfamily_P-loop_NTPase	pfam_ATPase_AAA_core,pfam_DNA_helicase_Holl-junc_RuvB_N,superfamily_P-loop_NTPase,superfamily_Asp_de-COase-like_dom,smart_AAA+_ATPase	-	no_errors	SPATA5	HGNC	ENSG00000145375	tier1	-	-	45	0	0.00	14	3	17.65
TF	0	genome.wustl.edu	37	3	133467272	133467272	+	Silent	SNP	C	C	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	3	133467272	133467272	C	T	SNP	TF	ENST00000402696	human	ensembl	74_37	+1	known	silent	c.60	p.V20	0.003	pirsf_Transferrin	pfam_Transferrin_fam,smart_Transferrin_fam,pirsf_Transferrin,prints_Transferrin_fam	-	no_errors	TF	HGNC	ENSG00000091513	tier1	-	-	71	0	0.00	11	25	69.44
PLK3	0	genome.wustl.edu	37	1	45270778	45270778	+	RNA	DEL	A	A	-			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	45270778	45270778	A	-	DEL	PLK3	ENST00000461769	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	PLK3	HGNC	ENSG00000173846	tier1			14	0	0.00	10	3	23.08
TNRC6C	0	genome.wustl.edu	37	17	76047369	76047369	+	Silent	SNP	A	A	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	17	76047369	76047369	A	G	SNP	TNRC6C	ENST00000335749	human	ensembl	74_37	+1	known	silent	c.2226	p.V742	0.996	NULL	pfam_Argonaute_hook_dom,pfam_UBA/Ts_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	tier1	-	-	59	0	0.00	55	47	46.08
MED14	0	genome.wustl.edu	37	X	40511075	40511075	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	40511075	40511075	G	A	SNP	MED14	ENST00000324817	human	ensembl	74_37	-1	known	missense	c.4348	p.P1450S	1.000	NULL	pfam_Mediator_Med14	-	no_errors	MED14	HGNC	ENSG00000180182	tier1	-	-	90	0	0.00	105	38	26.57
CDYL2	0	genome.wustl.edu	37	16	80719022	80719022	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	16	80719022	80719022	T	C	SNP	CDYL2	ENST00000570137	human	ensembl	74_37	-1	known	missense	c.29	p.E10G	1.000	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	pfam_Crotonase_core_superfam,pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CDYL2	HGNC	ENSG00000166446	tier1	-	-	24	0	0.00	3	7	70.00
COL11A2	0	genome.wustl.edu	37	6	33157162	33157162	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	6	33157162	33157162	G	A	SNP	COL11A2	ENST00000341947	human	ensembl	74_37	-1	known	missense	c.167	p.A56V	0.495	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl_sf,superfamily_Fibrinogen_a/b/g_C_dom,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL11A2	HGNC	ENSG00000204248	tier1	-	-	62	0	0.00	32	4	11.11
TRMT1L	0	genome.wustl.edu	37	1	185097863	185097863	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	185097863	185097863	C	T	SNP	TRMT1L	ENST00000367504	human	ensembl	74_37	-1	known	missense	c.1127	p.S376N	1.000	NULL	pfam_TRM1,pfam_tRNA_Trfase_Trm5/Tyw2,pfscan_Znf_C2H2	-	no_errors	TRMT1L	HGNC	ENSG00000121486	tier1	-	-	35	0	0.00	38	4	9.52
OTOGL	0	genome.wustl.edu	37	12	80672001	80672001	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	12	80672001	80672001	G	T	SNP	OTOGL	ENST00000458043	human	ensembl	74_37	+1	known	missense	c.2708	p.W903L	1.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_AbfB,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	OTOGL	HGNC	ENSG00000165899	tier1	-	-	41	0	0.00	39	4	9.09
ZNF678	0	genome.wustl.edu	37	1	227842949	227842949	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	227842949	227842949	G	T	SNP	ZNF678	ENST00000397097	human	ensembl	74_37	+1	known	missense	c.1163	p.C388F	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF678	HGNC	ENSG00000181450	tier1	-	-	35	0	0.00	28	4	12.50
CTAGE5	0	genome.wustl.edu	37	14	39790147	39790147	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	14	39790147	39790147	G	C	SNP	CTAGE5	ENST00000396158	human	ensembl	74_37	+1	known	missense	c.1574	p.G525A	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	tier1	-	-	77	0	0.00	8	31	79.49
DNM1P47	0	genome.wustl.edu	37	15	102299771	102299771	+	RNA	SNP	C	C	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	15	102299771	102299771	C	A	SNP	DNM1P47	ENST00000561463	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	DNM1P47	HGNC	ENSG00000259660	tier1	-	-	16	0	0.00	8	4	33.33
WBSCR22	0	genome.wustl.edu	37	7	73112209	73112209	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	7	73112209	73112209	G	A	SNP	WBSCR22	ENST00000265758	human	ensembl	74_37	+1	known	missense	c.839	p.R280H	0.997	pfam_Unchr_MeTrfase_Williams-Beuren	pfam_Unchr_MeTrfase_Williams-Beuren,pfam_Methyltransf_11	-	no_errors	WBSCR22	HGNC	ENSG00000071462	tier1	-	-	132	0	0.00	77	28	26.67
MS4A14	0	genome.wustl.edu	37	11	60183891	60183891	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	11	60183891	60183891	A	G	SNP	MS4A14	ENST00000300187	human	ensembl	74_37	+1	known	missense	c.1450	p.R484G	0.000	NULL	pfam_CD20-like	-	no_errors	MS4A14	HGNC	ENSG00000166928	tier1	-	-	20	0	0.00	9	18	66.67
ETV2	0	genome.wustl.edu	37	19	36133568	36133568	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	19	36133568	36133568	C	T	SNP	ETV2	ENST00000402764	human	ensembl	74_37	+1	known	missense	c.122	p.T41M	0.374	NULL	pfam_Ets_dom,smart_Ets_dom,prints_Ets_dom,pfscan_Ets_dom	-	no_errors	ETV2	HGNC	ENSG00000105672	tier1	-	-	84	0	0.00	41	4	8.89
ARV1	0	genome.wustl.edu	37	1	231115061	231115061	+	RNA	SNP	A	A	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	231115061	231115061	A	G	SNP	ARV1	ENST00000497753	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	ARV1	HGNC	ENSG00000173409	tier1	-	-	39	0	0.00	7	14	66.67
ALG14	0	genome.wustl.edu	37	1	95492733	95492733	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	1	95492733	95492733	G	T	SNP	ALG14	ENST00000370205	human	ensembl	74_37	-1	known	missense	c.372	p.H124Q	0.652	pfam_Oligosacch_biosynth_Alg14	pfam_Oligosacch_biosynth_Alg14	-	no_errors	ALG14	HGNC	ENSG00000172339	tier1	-	-	84	0	0.00	31	4	11.43
SLC26A4	0	genome.wustl.edu	37	7	107330649	107330649	+	Silent	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	7	107330649	107330649	G	A	SNP	SLC26A4	ENST00000265715	human	ensembl	74_37	+1	known	silent	c.1230	p.T410	0.001	pfam_Sulph_transpt,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	tier1	-	-	34	0	0.00	12	11	47.83
ACAN	0	genome.wustl.edu	37	15	89381937	89381937	+	Silent	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	15	89381937	89381937	G	A	SNP	ACAN	ENST00000439576	human	ensembl	74_37	+1	known	silent	c.114	p.P38	0.000	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like_dom	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_Sushi_SCR_CCP,pfam_EG-like_dom,superfamily_C-type_lectin_fold,superfamily_Sushi_SCR_CCP,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,smart_EG-like_dom,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like_dom,prints_Link	-	no_errors	ACAN	HGNC	ENSG00000157766	tier1	-	-	88	0	0.00	30	8	21.05
HIPK4	0	genome.wustl.edu	37	19	40890005	40890005	+	Silent	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	19	40890005	40890005	G	T	SNP	HIPK4	ENST00000291823	human	ensembl	74_37	-1	known	silent	c.507	p.R169	0.994	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HIPK4	HGNC	ENSG00000160396	tier1	-	-	49	0	0.00	21	4	16.00
NF1	0	genome.wustl.edu	37	17	29664854	29664854	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	17	29664854	29664854	T	G	SNP	NF1	ENST00000358273	human	ensembl	74_37	+1	known	missense	c.6660	p.I2220M	1.000	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	tier1	-	-	67	0	0.00	14	24	63.16
SCARNA21	0	genome.wustl.edu	37	17	7809530	7809530	+	RNA	SNP	G	G	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	17	7809530	7809530	G	T	SNP	SCARNA21	ENST00000517026	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.074	-	-	-	no_errors	SCARNA21	HGNC	ENSG00000252835	tier1	-	-	43	0	0.00	25	4	13.79
CXorf22	0	genome.wustl.edu	37	X	35937998	35937998	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	35937998	35937998	C	A	SNP	CXorf22	ENST00000297866	human	ensembl	74_37	+1	known	missense	c.82	p.P28T	0.000	NULL	superfamily_PapD-like	-	no_errors	CXorf22	HGNC	ENSG00000165164	tier1	-	-	127	0	0.00	48	58	54.72
TMF1	0	genome.wustl.edu	37	3	69087758	69087758	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	3	69087758	69087758	G	A	SNP	TMF1	ENST00000543976	human	ensembl	74_37	-1	known	missense	c.2117	p.A706V	1.000	NULL	pfam_TMF_TATA-bd,pfam_TMF_DNA-bd	-	no_errors	TMF1	HGNC	ENSG00000144747	tier1	-	-	100	0	0.00	28	4	12.50
FAM47B	0	genome.wustl.edu	37	X	34962204	34962204	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	34962204	34962204	G	A	SNP	FAM47B	ENST00000329357	human	ensembl	74_37	+1	known	missense	c.1256	p.R419Q	0.001	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	tier1	-	-	94	0	0.00	49	39	44.32
LMO7	0	genome.wustl.edu	37	13	76429454	76429454	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	13	76429454	76429454	G	A	SNP	LMO7	ENST00000341547	human	ensembl	74_37	+1	known	missense	c.3874	p.A1292T	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_CH-domain,pfam_PDZ,pfam_Znf_LIM,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	tier1	-	-	69	0	0.00	28	4	12.50
SYTL4	0	genome.wustl.edu	37	X	99934327	99934327	+	Silent	SNP	T	T	C			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	X	99934327	99934327	T	C	SNP	SYTL4	ENST00000454200	human	ensembl	74_37	-1	known	silent	c.1647	p.S549	0.982	pfam_C2_dom,superfamily_C2_dom,smart_C2_dom,pfscan_C2_dom	pfam_C2_dom,superfamily_C2_dom,superfamily_Znf_FYVE_PHD,smart_C2_dom,pfscan_C2_dom,pfscan_Znf_FYVE-typ,prints_Synaptotagmin	-	no_errors	SYTL4	HGNC	ENSG00000102362	tier1	-	-	72	0	0.00	14	3	17.65
NEU4	0	genome.wustl.edu	37	2	242756292	242756292	+	Silent	SNP	G	G	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	2	242756292	242756292	G	A	SNP	NEU4	ENST00000325935	human	ensembl	74_37	+1	known	silent	c.444	p.S148	0.943	superfamily_Sialidases	superfamily_Sialidases	-	no_errors	NEU4	HGNC	ENSG00000204099	tier1	-	-	105	0	0.00	28	9	24.32
TRPA1	0	genome.wustl.edu	37	8	72975032	72975032	+	Splice_Site	SNP	A	A	T			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	8	72975032	72975032	A	T	SNP	TRPA1	ENST00000262209	human	ensembl	74_37	-1	known	splice_site	c.807+2	e6+2	0.998	-	-	-	no_errors	TRPA1	HGNC	ENSG00000104321	tier1	-	-	52	0	0.00	54	20	27.03
TTC21A	0	genome.wustl.edu	37	3	39170278	39170278	+	Frame_Shift_Del	DEL	C	C	-			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	3	39170278	39170278	C	-	DEL	TTC21A	ENST00000301819	human	ensembl	74_37	+1	known	frame_shift_del	c.1775	p.I593fs	1.000	smart_TPR_repeat,pfscan_TPR-contain_dom	pfam_TPR_1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC21A	HGNC	ENSG00000168026	tier1			42	0	0.00	10	2	16.67
PFKP	0	genome.wustl.edu	37	10	3143147	3143147	+	Silent	SNP	C	C	A			TCGA-DX-AB2X-01A-11D-A387-09	TCGA-DX-AB2X-10A-01D-A38A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	e974c2c7-3bb3-487c-b408-70d51608c374	afa3e1cd-afd2-4a98-bdc9-f6ae7beb9855	10	3143147	3143147	C	A	SNP	PFKP	ENST00000381075	human	ensembl	74_37	+1	known	silent	c.195	p.G65	0.000	pirsf_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057	tier1	-	-	123	0	0.00	48	5	9.43
