Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TRPC7	0	genome.wustl.edu	37	5	135692363	135692363	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	5	135692363	135692363	G	T	SNP	TRPC7	ENST00000513104	human	ensembl	74_37	-1	known	missense	c.713	p.P238H	1.000	pfam_TRP_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,pfam_PKD1_2_channel,superfamily_Ankyrin_rpt-contain_dom,superfamily_ARM-type_fold,smart_Ankyrin_rpt,prints_TRPC7_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC7	HGNC	ENSG00000069018	tier1	-	-	23	0	0.00	21	4	16.00
TMEM132E	0	genome.wustl.edu	37	17	32957125	32957125	+	Silent	SNP	C	C	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	17	32957125	32957125	C	T	SNP	TMEM132E	ENST00000321639	human	ensembl	74_37	+1	known	silent	c.1167	p.I389	1.000	NULL	NULL	-	no_errors	TMEM132E	HGNC	ENSG00000181291	tier1	-	-	39	0	0.00	35	4	10.26
CHDH	0	genome.wustl.edu	37	3	53857394	53857394	+	Silent	SNP	G	G	A			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	3	53857394	53857394	G	A	SNP	CHDH	ENST00000315251	human	ensembl	74_37	-1	known	silent	c.642	p.T214	0.043	pfam_GMC_OxRdtase_N,pirsf_GMC_OxRdtase	pfam_GMC_OxRdtase_N,pfam_GMC_OxRtase_C,pirsf_GMC_OxRdtase	-	no_errors	CHDH	HGNC	ENSG00000016391	tier1	-	-	66	0	0.00	1	66	98.51
PDSS2	0	genome.wustl.edu	37	6	107475958	107475958	+	Silent	SNP	G	G	A			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	6	107475958	107475958	G	A	SNP	PDSS2	ENST00000369037	human	ensembl	74_37	-1	known	silent	c.1065	p.G355	1.000	superfamily_Terpenoid_synth	pfam_Polyprenyl_synt,superfamily_Terpenoid_synth	-	no_errors	PDSS2	HGNC	ENSG00000164494	tier1	-	-	64	0	0.00	5	35	87.50
MCF2	0	genome.wustl.edu	37	X	138774264	138774264	+	Silent	SNP	C	C	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	X	138774264	138774264	C	T	SNP	MCF2	ENST00000370578	human	ensembl	74_37	-1	known	silent	c.21	p.S7	0.000	NULL	pfam_DH-domain,superfamily_DH-domain,superfamily_CRAL-TRIO_dom,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	MCF2	HGNC	ENSG00000101977	tier1	-	-	48	0	0.00	4	17	80.95
KMT2C	0	genome.wustl.edu	37	7	151962269	151962269	+	Silent	SNP	C	C	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	7	151962269	151962269	C	T	SNP	KMT2C	ENST00000355193	human	ensembl	74_37	-1	known	silent	c.1038	p.V346	1.000	superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Znf_RING,pfscan_Znf_PHD-finger,pfscan_Znf_RING	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_box_dom,smart_Znf_PHD,smart_Znf_RING,smart_HMG_box_dom,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	KMT2C	HGNC	ENSG00000055609	tier1	-	-	136	1	0.73	108	13	10.74
SCN2A	0	genome.wustl.edu	37	2	166152401	166152401	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	2	166152401	166152401	C	T	SNP	SCN2A	ENST00000283256	human	ensembl	74_37	+1	known	missense	c.68	p.A23V	1.000	NULL	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_DUF3451,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2,pfscan_IQ_motif_EF-hand-BS	-	no_errors	SCN2A	HGNC	ENSG00000136531	tier1	-	-	46	0	0.00	37	4	9.76
TGFBRAP1	0	genome.wustl.edu	37	2	105886143	105886143	+	Silent	SNP	G	G	A			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	2	105886143	105886143	G	A	SNP	TGFBRAP1	ENST00000258449	human	ensembl	74_37	-1	known	silent	c.1992	p.G664	0.540	pfam_Clathrin_H-chain/VPS_repeat	pfam_VPS39/TGF_beta_rcpt-assoc_2,pfam_VPS39/TGF_beta_rcpt-assoc_1,pfam_Clathrin_H-chain/VPS_repeat,pfam_Citron	-	no_errors	TGFBRAP1	HGNC	ENSG00000135966	tier1	-	-	41	0	0.00	20	4	16.67
GRP	0	genome.wustl.edu	37	18	56892844	56892844	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	18	56892844	56892844	T	C	SNP	GRP	ENST00000256857	human	ensembl	74_37	+1	known	missense	c.260	p.L87P	0.088	NULL	pfam_Bombesin	-	no_errors	GRP	HGNC	ENSG00000134443	tier1	-	-	57	0	0.00	2	45	95.74
SLC24A1	0	genome.wustl.edu	37	15	65943029	65943029	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	15	65943029	65943029	G	T	SNP	SLC24A1	ENST00000261892	human	ensembl	74_37	+1	known	missense	c.2542	p.V848L	0.000	tigrfam_K/Na/Ca-exchanger	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K/Na/Ca-exchanger	-	no_errors	SLC24A1	HGNC	ENSG00000074621	tier1	-	-	94	0	0.00	33	4	10.81
ZMYND11	0	genome.wustl.edu	37	10	226039	226039	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	10	226039	226039	G	C	SNP	ZMYND11	ENST00000381591	human	ensembl	74_37	+1	known	missense	c.87	p.K29N	1.000	NULL	pfam_PWWP_dom,pfam_Bromodomain,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP_dom,pfscan_PWWP_dom,pfscan_Znf_MYND,pfscan_Znf_PHD-finger,pfscan_Bromodomain	-	no_errors	ZMYND11	HGNC	ENSG00000015171	tier1	-	-	122	0	0.00	8	56	87.50
FCRL5	0	genome.wustl.edu	37	1	157490262	157490262	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	1	157490262	157490262	G	A	SNP	FCRL5	ENST00000356953	human	ensembl	74_37	-1	known	missense	c.2591	p.A864V	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	FCRL5	HGNC	ENSG00000143297	tier1	-	-	16	0	0.00	12	4	25.00
ZNF610	0	genome.wustl.edu	37	19	52857573	52857573	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	19	52857573	52857573	G	A	SNP	ZNF610	ENST00000321287	human	ensembl	74_37	+1	known	missense	c.260	p.S87N	0.002	pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF610	HGNC	ENSG00000167554	tier1	-	-	62	0	0.00	37	4	9.76
CACNA1H	0	genome.wustl.edu	37	16	1256105	1256105	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	16	1256105	1256105	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	74_37	+1	known	missense	c.2605	p.V869I	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	tier1	-	-	32	0	0.00	0	32	100.00
NTNG2	0	genome.wustl.edu	37	9	135116314	135116314	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	9	135116314	135116314	A	G	SNP	NTNG2	ENST00000360670	human	ensembl	74_37	+1	known	missense	c.1258	p.I420V	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_EGF_extracell,smart_Laminin_N,smart_EGF_laminin,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	NTNG2	HGNC	ENSG00000196358	tier1	-	-	42	0	0.00	0	55	100.00
KRTAP5-5	0	genome.wustl.edu	37	11	1651210	1651239	+	In_Frame_Del	DEL	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	-			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	11	1651210	1651239	GCTGTGGCTCCGGCTGTGCGGGCTGTGGGG	-	DEL	KRTAP5-5	ENST00000399676	human	ensembl	74_37	+1	known	in_frame_del	c.140_169	p.GCAGCGGCGS51in_frame_del	0.818:0.967:0.993:0.997:0.997:0.999:1.000:0.998:0.998:0.991:0.983:0.976:1.000:1.000:0.999:0.995:0.061:0.083:0.113:0.325:0.996:0.999:1.000:1.000:0.999:0.994:0.996:0.995:0.546:0.579	NULL	NULL	-	no_errors	KRTAP5-5	HGNC	ENSG00000185940	tier1			NA	NA	NA	NA	NA	NA
IL8	0	genome.wustl.edu	37	4	74607335	74607356	+	Frame_Shift_Del	DEL	ATTTATCAAAGAACTGAGAGTG	ATTTATCAAAGAACTGAGAGTG	-			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	ATTTATCAAAGAACTGAGAGTG	ATTTATCAAAGAACTGAGAGTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	4	74607335	74607356	ATTTATCAAAGAACTGAGAGTG	-	DEL	IL8	ENST00000307407	human	ensembl	74_37	+1	known	frame_shift_del	c.141_162	p.F48fs	0.497:0.041:0.001:0.007:0.844:0.926:0.923:0.931:0.978:0.993:0.998:0.998:0.984:0.984:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom	pfam_Chemokine_IL8-like_dom,superfamily_Chemokine_IL8-like_dom,smart_Chemokine_IL8-like_dom,prints_Chemokine_CXC	-	no_errors	IL8	HGNC	ENSG00000169429	tier1			NA	NA	NA	NA	NA	NA
LIMCH1	0	genome.wustl.edu	37	4	41699388	41699388	+	RNA	DEL	T	T	-			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	4	41699388	41699388	T	-	DEL	LIMCH1	ENST00000515785	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	LIMCH1	HGNC	ENSG00000064042	tier1			18	0	0.00	7	7	50.00
CXADRP3	0	genome.wustl.edu	37	18	14478302	14478302	+	RNA	SNP	T	T	A			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	18	14478302	14478302	T	A	SNP	CXADRP3	ENST00000581457	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	CXADRP3	HGNC	ENSG00000265766	tier1	-	-	60	0	0.00	0	50	100.00
IGSF3	0	genome.wustl.edu	37	1	117142613	117142613	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	1	117142613	117142613	C	T	SNP	IGSF3	ENST00000318837	human	ensembl	74_37	-1	known	missense	c.2039	p.R680Q	0.716	smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like_dom	-	no_errors	IGSF3	HGNC	ENSG00000143061	tier1	rs76151115	-	45	0	0.00	50	15	23.08
EHD2	0	genome.wustl.edu	37	19	48220051	48220051	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	19	48220051	48220051	T	G	SNP	EHD2	ENST00000263277	human	ensembl	74_37	+1	known	missense	c.182	p.V61G	1.000	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase	pfam_Dynamin_GTPase,superfamily_P-loop_NTPase,smart_EPS15_homology,pfscan_EF_hand_dom,pfscan_EPS15_homology	-	no_errors	EHD2	HGNC	ENSG00000024422	tier1	-	-	83	0	0.00	6	69	92.00
NPSR1-AS1	0	genome.wustl.edu	37	7	34800738	34800738	+	RNA	SNP	T	T	G			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	7	34800738	34800738	T	G	SNP	NPSR1-AS1	ENST00000419766	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NPSR1-AS1	HGNC	ENSG00000197085	tier1	-	-	92	0	0.00	27	45	62.50
TNXB	0	genome.wustl.edu	37	6	32064925	32064925	+	Silent	SNP	G	G	A			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	6	32064925	32064925	G	A	SNP	TNXB	ENST00000375247	human	ensembl	74_37	-1	known	silent	c.705	p.C235	0.052	pfam_EGF_extracell,smart_EG-like_dom	pfam_Fibronectin_type3,pfam_Fibrinogen_a/b/g_C_dom,pfam_EGF_extracell,superfamily_Fibrinogen_a/b/g_C_dom,superfamily_Fibronectin_type3,smart_EG-like_dom,smart_Fibronectin_type3,smart_Fibrinogen_a/b/g_C_dom,pfscan_EG-like_dom,pfscan_Fibronectin_type3	-	no_errors	TNXB	HGNC	ENSG00000168477	tier1	-	-	40	0	0.00	27	4	12.90
TP53	0	genome.wustl.edu	37	17	7577105	7577105	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	17	7577105	7577105	G	T	SNP	TP53	ENST00000269305	human	ensembl	74_37	-1	known	missense	c.833	p.P278H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	tier1	-	-	29	0	0.00	1	37	97.37
TAS2R64P	0	genome.wustl.edu	37	12	11230465	11230465	+	RNA	SNP	C	C	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	12	11230465	11230465	C	T	SNP	TAS2R64P	ENST00000534866	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	TAS2R64P	HGNC	ENSG00000256274	tier1	rs78048403	-	72	0	0.00	34	9	20.93
ENSG00000188971	0	genome.wustl.edu	37	2	69688632	69688632	+	RNA	DEL	A	A	-			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	2	69688632	69688632	A	-	DEL	ENSG00000188971	ENST00000339092	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-427H3.3	Clone_based_vega_gene	ENSG00000188971	tier1			14	0	0.00	11	2	15.38
FAT3	0	genome.wustl.edu	37	11	92615944	92615944	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	11	92615944	92615944	G	T	SNP	FAT3	ENST00000298047	human	ensembl	74_37	+1	known	nonsense	c.12322	p.E4108*	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_Ca-bd_dom,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_Laminin_G,smart_EGF-like_Ca-bd_dom,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT3	HGNC	ENSG00000165323	tier1	-	-	35	0	0.00	41	4	8.89
NF1	0	genome.wustl.edu	37	17	29527470	29527471	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	17	29527470	29527471	-	T	INS	NF1	ENST00000358273	human	ensembl	74_37	+1	known	frame_shift_ins	c.919_920	p.A308fs	0.968:0.970	superfamily_ARM-type_fold	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP	-	no_errors	NF1	HGNC	ENSG00000196712	tier1			120	0	0.00	11	63	85.14
DNAH3	0	genome.wustl.edu	37	16	21049179	21049179	+	Silent	SNP	G	G	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	16	21049179	21049179	G	T	SNP	DNAH3	ENST00000261383	human	ensembl	74_37	-1	known	silent	c.4854	p.L1618	0.990	NULL	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_P-loop_NTPase,superfamily_Prefoldin,smart_AAA+_ATPase	-	no_errors	DNAH3	HGNC	ENSG00000158486	tier1	-	-	65	0	0.00	44	4	8.33
WDFY4	0	genome.wustl.edu	37	10	49984994	49984994	+	Silent	SNP	G	G	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	10	49984994	49984994	G	T	SNP	WDFY4	ENST00000325239	human	ensembl	74_37	+1	known	silent	c.3063	p.S1021	0.003	NULL	pfam_BEACH_dom,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDFY4	HGNC	ENSG00000128815	tier1	-	-	53	0	0.00	45	4	8.16
MYO15A	0	genome.wustl.edu	37	17	18023246	18023246	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	17	18023246	18023246	G	A	SNP	MYO15A	ENST00000205890	human	ensembl	74_37	+1	known	missense	c.1132	p.V378I	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	tier1	-	-	83	0	0.00	50	8	13.79
EED	0	genome.wustl.edu	37	11	85977214	85977214	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	11	85977214	85977214	T	-	DEL	EED	ENST00000263360	human	ensembl	74_37	+1	known	frame_shift_del	c.816	p.N272fs	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	EED	HGNC	ENSG00000074266	tier1			152	0	0.00	15	88	85.44
TSC22D1	0	genome.wustl.edu	37	13	45008959	45008959	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	13	45008959	45008959	G	T	SNP	TSC22D1	ENST00000458659	human	ensembl	74_37	-1	known	missense	c.3025	p.Q1009K	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	tier1	-	-	49	0	0.00	41	4	8.89
NBPF14	0	genome.wustl.edu	37	1	148023129	148023129	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	1	148023129	148023129	C	G	SNP	NBPF14	ENST00000369219	human	ensembl	74_37	-1	known	missense	c.363	p.E121D	0.924	pfam_NBPF_dom	pfam_NBPF_dom	-	no_errors	NBPF14	HGNC	ENSG00000122497	tier1	rs202128472	-	22	0	0.00	6	4	40.00
LINC00943	0	genome.wustl.edu	37	12	127229808	127229809	+	RNA	INS	-	-	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	12	127229808	127229809	-	T	INS	LINC00943	ENST00000345111	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.006:0.004	-	-	-	no_errors	LINC00943	HGNC	ENSG00000189238	tier1			30	0	0.00	20	3	13.04
RNF215	0	genome.wustl.edu	37	22	30783220	30783221	+	In_Frame_Ins	INS	-	-	GCAGCAGCA			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	22	30783220	30783221	-	GCAGCAGCA	INS	RNF215	ENST00000382363	human	ensembl	74_37	-1	known	in_frame_ins	c.83_82	p.28in_frame_insLLL	0.968:0.994	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF215	HGNC	ENSG00000099999	tier1			NA	NA	NA	NA	NA	NA
HUNK	0	genome.wustl.edu	37	21	33371479	33371479	+	Silent	SNP	G	G	T			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	21	33371479	33371479	G	T	SNP	HUNK	ENST00000270112	human	ensembl	74_37	+1	known	silent	c.2127	p.G709	0.048	NULL	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	HUNK	HGNC	ENSG00000142149	tier1	-	-	62	0	0.00	7	52	86.67
ADAM21P1	0	genome.wustl.edu	37	14	70714300	70714300	+	RNA	SNP	A	A	G			TCGA-DX-AB30-01A-11D-A38Z-09	TCGA-DX-AB30-10A-01D-A38Z-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	f4dc9363-c6af-4262-99fd-ad58bf716936	c3be8a1b-e675-4781-b908-2ca544764caa	14	70714300	70714300	A	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	tier1	rs112607032	-	33	0	0.00	35	4	10.26
