Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
TMTC3	0	genome.wustl.edu	37	12	88547274	88547274	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	88547274	88547274	A	G	SNP	TMTC3	ENST00000266712	human	ensembl	74_37	+1	known	missense	c.396	p.I132M	1.000	NULL	pfam_TPR_2,pfam_TPR_1,pfam_DUF1736,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TMTC3	HGNC	ENSG00000139324	tier1	-	-	44	0	0.00	25	18	41.86
NDST3	0	genome.wustl.edu	37	4	118975508	118975508	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	4	118975508	118975508	G	T	SNP	NDST3	ENST00000296499	human	ensembl	74_37	+1	known	missense	c.443	p.S148I	1.000	pfam_Heparan_SO4_deacetylase	pfam_Heparan_SO4_deacetylase,pfam_Sulfotransferase_dom,superfamily_P-loop_NTPase	-	no_errors	NDST3	HGNC	ENSG00000164100	tier1	-	-	88	0	0.00	54	5	8.47
MUC16	0	genome.wustl.edu	37	19	9015716	9015716	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	19	9015716	9015716	G	C	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	missense	c.38107	p.L12703V	1.000	pfam_SEA_dom	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	90	0	0.00	26	14	35.00
RYR2	0	genome.wustl.edu	37	1	237843759	237843759	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	1	237843759	237843759	G	A	SNP	RYR2	ENST00000360064	human	ensembl	74_37	+1	known	missense	c.8893	p.V2965I	0.984	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_hand_dom,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	tier1	-	-	34	0	0.00	17	7	29.17
ZNF853	0	genome.wustl.edu	37	7	6661387	6661389	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	7	6661387	6661389	GCA	-	DEL	ZNF853	ENST00000457543	human	ensembl	74_37	+1	known	in_frame_del	c.765_767	p.Q259in_frame_del	0.002:0.000:0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF853	HGNC	ENSG00000236609	tier1			47	0	0.00	21	2	8.70
ENSG00000216089	0	genome.wustl.edu	37	4	160216908	160216908	+	RNA	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	4	160216908	160216908	C	T	SNP	ENSG00000216089	ENST00000401270	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors	AC105316.1	Clone_based_ensembl_gene	ENSG00000216089	tier1	rs4690935	-	33	0	0.00	29	5	14.71
HIST1H1D	0	genome.wustl.edu	37	6	26235042	26235042	+	Silent	SNP	T	T	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	26235042	26235042	T	C	SNP	HIST1H1D	ENST00000244534	human	ensembl	74_37	-1	known	silent	c.120	p.P40	1.000	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	pfam_Histone_H1/H5_H15,smart_Histone_H1/H5_H15,prints_Histone_H5	-	no_errors	HIST1H1D	HGNC	ENSG00000124575	tier1	-	-	67	0	0.00	36	4	10.00
RPL22	0	genome.wustl.edu	37	1	6257784	6257785	+	Frame_Shift_Ins	INS	-	-	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	1	6257784	6257785	-	T	INS	RPL22	ENST00000234875	human	ensembl	74_37	-1	known	frame_shift_ins	c.45_44	p.K16fs	1.000:1.000	pfam_Ribosomal_L22e	pfam_Ribosomal_L22e	-	no_errors	RPL22	HGNC	ENSG00000116251	tier1			48	0	0.00	23	2	8.00
CACNA1B	0	genome.wustl.edu	37	9	140946634	140946634	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	9	140946634	140946634	G	T	SNP	CACNA1B	ENST00000371355	human	ensembl	74_37	+1	known	missense	c.3804	p.K1268N	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_hand_dom,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	tier1	-	-	40	0	0.00	31	4	11.43
SLC2A14	0	genome.wustl.edu	37	12	8023832	8023832	+	RNA	SNP	C	C	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	8023832	8023832	C	A	SNP	SLC2A14	ENST00000544749	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC2A14	HGNC	ENSG00000173262	tier1	-	-	36	0	0.00	18	4	18.18
ZNF264	0	genome.wustl.edu	37	19	57724201	57724201	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	19	57724201	57724201	G	T	SNP	ZNF264	ENST00000263095	human	ensembl	74_37	+1	known	missense	c.1736	p.G579V	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF264	HGNC	ENSG00000083844	tier1	-	-	55	0	0.00	31	4	11.11
SLC2A9	0	genome.wustl.edu	37	4	9943604	9943604	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	4	9943604	9943604	A	-	DEL	SLC2A9	ENST00000264784	human	ensembl	74_37	-1	known	frame_shift_del	c.747	p.L252fs	0.990	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_Sugar/inositol_transpt	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,prints_Sugar/inositol_transpt,tigrfam_Sugar/inositol_transpt	-	no_errors	SLC2A9	HGNC	ENSG00000109667	tier1			54	0	0.00	10	2	16.67
TENM4	0	genome.wustl.edu	37	11	78369776	78369776	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	11	78369776	78369776	G	T	SNP	TENM4	ENST00000278550	human	ensembl	74_37	-1	known	missense	c.7637	p.T2546K	0.656	NULL	pfam_Ten_N,pfam_EGF_extracell,pfam_YD,superfamily_CarboxyPept-like_regulatory,smart_EG-like_dom,pfscan_EG-like_dom,tigrfam_YD,tigrfam_Rhs_assc_core	-	no_errors	TENM4	HGNC	ENSG00000149256	tier1	-	-	35	0	0.00	18	3	14.29
OR4C46	0	genome.wustl.edu	37	11	51516009	51516009	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	11	51516009	51516009	C	T	SNP	OR4C46	ENST00000328188	human	ensembl	74_37	+1	known	missense	c.728	p.T243M	0.103	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4C46	HGNC	ENSG00000185926	tier1	rs137991158	-	93	0	0.00	24	12	33.33
S100G	0	genome.wustl.edu	37	X	16669217	16669217	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	X	16669217	16669217	G	T	SNP	S100G	ENST00000380200	human	ensembl	74_37	+1	known	missense	c.88	p.D30Y	0.963	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,pfam_EF_hand_dom,smart_EF_hand_dom,pfscan_EF_hand_dom	-	no_errors	S100G	HGNC	ENSG00000169906	tier1	-	-	57	0	0.00	44	4	8.33
C3orf20	0	genome.wustl.edu	37	3	14725834	14725834	+	Silent	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	3	14725834	14725834	C	T	SNP	C3orf20	ENST00000253697	human	ensembl	74_37	+1	known	silent	c.570	p.N190	0.001	NULL	NULL	-	no_errors	C3orf20	HGNC	ENSG00000131379	tier1	-	-	39	0	0.00	26	4	13.33
FAM83G	0	genome.wustl.edu	37	17	18891589	18891589	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	17	18891589	18891589	G	A	SNP	FAM83G	ENST00000345041	human	ensembl	74_37	-1	known	missense	c.661	p.R221W	1.000	pfam_DUF1669	pfam_DUF1669	-	no_errors	FAM83G	HGNC	ENSG00000188522	tier1	-	-	44	0	0.00	9	7	43.75
ALKBH4	0	genome.wustl.edu	37	7	102097908	102097908	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	7	102097908	102097908	C	T	SNP	ALKBH4	ENST00000292566	human	ensembl	74_37	-1	known	missense	c.842	p.G281E	0.990	NULL	pfam_Oxoglu/Fe-dep_dioxygenase	-	no_errors	ALKBH4	HGNC	ENSG00000160993	tier1	-	-	78	0	0.00	32	30	48.39
PLEKHG5	0	genome.wustl.edu	37	1	6529183	6529188	+	In_Frame_Del	DEL	TCCTCC	TCCTCC	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	TCCTCC	TCCTCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	1	6529183	6529188	TCCTCC	-	DEL	PLEKHG5	ENST00000537245	human	ensembl	74_37	-1	known	in_frame_del	c.2405_2400	p.EE801in_frame_del	0.152:0.271:0.391:0.513:0.634:0.754	NULL	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PLEKHG5	HGNC	ENSG00000171680	tier1			NA	NA	NA	NA	NA	NA
DPH2	0	genome.wustl.edu	37	1	44437362	44437362	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	1	44437362	44437362	G	A	SNP	DPH2	ENST00000255108	human	ensembl	74_37	+1	known	missense	c.788	p.R263Q	0.001	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	pfam_DPH1/DPH2,tigrfam_DPH1/DPH2,tigrfam_DHP2_eu	-	no_errors	DPH2	HGNC	ENSG00000132768	tier1	-	-	28	0	0.00	9	3	25.00
CHPF2	0	genome.wustl.edu	37	7	150935155	150935155	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	7	150935155	150935155	G	T	SNP	CHPF2	ENST00000035307	human	ensembl	74_37	+1	known	missense	c.1707	p.E569D	1.000	pfam_Chond_GalNAc	pfam_Chond_GalNAc,pfam_Fringe-like	-	no_errors	CHPF2	HGNC	ENSG00000033100	tier1	-	-	42	0	0.00	13	8	38.10
TBC1D15	0	genome.wustl.edu	37	12	72291723	72291723	+	Splice_Site	SNP	T	T	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	72291723	72291723	T	A	SNP	TBC1D15	ENST00000550746	human	ensembl	74_37	+1	known	splice_site	c.1234+2	e11+2	1.000	-	-	-	no_errors	TBC1D15	HGNC	ENSG00000121749	tier1	-	-	66	0	0.00	31	56	64.37
JUP	0	genome.wustl.edu	37	17	39777227	39777227	+	Silent	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	17	39777227	39777227	C	T	SNP	JUP	ENST00000540235	human	ensembl	74_37	-1	known	silent	c.1428	p.Q476	0.999	pfam_IF,prints_Keratin_I	pfam_IF,pfam_Armadillo,superfamily_ARM-type_fold,superfamily_Prefoldin,smart_Armadillo,pfscan_Armadillo,prints_Keratin_I,prints_Beta-catenin	-	no_errors	JUP	HGNC	ENSG00000173801	tier1	-	-	47	0	0.00	34	4	10.53
IKBKAP	0	genome.wustl.edu	37	9	111685148	111685148	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	9	111685148	111685148	T	C	SNP	IKBKAP	ENST00000374647	human	ensembl	74_37	-1	known	missense	c.526	p.R176G	1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	tier1	-	-	58	0	0.00	30	16	34.78
MRVI1	0	genome.wustl.edu	37	11	10615134	10615134	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	11	10615134	10615134	G	T	SNP	MRVI1	ENST00000526414	human	ensembl	74_37	-1	known	missense	c.1259	p.P420Q	0.999	pfam_MRVI1	pfam_MRVI1	-	no_errors	MRVI1	HGNC	ENSG00000072952	tier1	-	-	30	0	0.00	27	4	12.90
SNX21	0	genome.wustl.edu	37	20	44469993	44469993	+	RNA	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	20	44469993	44469993	C	T	SNP	SNX21	ENST00000344780	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	SNX21	HGNC	ENSG00000124104	tier1	-	-	47	0	0.00	13	3	18.75
COL12A1	0	genome.wustl.edu	37	6	75814960	75814960	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	75814960	75814960	G	T	SNP	COL12A1	ENST00000322507	human	ensembl	74_37	-1	known	missense	c.8227	p.Q2743K	0.999	NULL	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC	ENSG00000111799	tier1	-	-	28	0	0.00	17	3	15.00
FLI1	0	genome.wustl.edu	37	11	128642720	128642720	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	11	128642720	128642720	G	T	SNP	FLI1	ENST00000527786	human	ensembl	74_37	+1	known	missense	c.429	p.E143D	1.000	pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom	pfam_Ets_dom,pfam_Pointed_dom,superfamily_SAM/pointed,smart_Pointed_dom,smart_Ets_dom,pfscan_Ets_dom,prints_Ets_dom	-	no_errors	FLI1	HGNC	ENSG00000151702	tier1	-	-	34	0	0.00	25	4	13.79
ACSS2	0	genome.wustl.edu	37	20	33503020	33503020	+	Splice_Site	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	20	33503020	33503020	G	T	SNP	ACSS2	ENST00000253382	human	ensembl	74_37	+1	known	splice_site	c.835-1	e8-1	1.000	-	-	-	no_errors	ACSS2	HGNC	ENSG00000131069	tier1	-	-	50	0	0.00	32	4	11.11
AVIL	0	genome.wustl.edu	37	12	58207134	58207134	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	58207134	58207134	G	C	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	missense	c.214	p.Q72E	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407	tier1	-	-	17	0	0.00	330	128	27.95
ZNF446	0	genome.wustl.edu	37	19	58988668	58988668	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	19	58988668	58988668	G	T	SNP	ZNF446	ENST00000594369	human	ensembl	74_37	+1	known	missense	c.83	p.R28L	0.306	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF446	HGNC	ENSG00000083838	tier1	-	-	48	0	0.00	15	3	16.67
CSRNP3	0	genome.wustl.edu	37	2	166536009	166536009	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	2	166536009	166536009	G	A	SNP	CSRNP3	ENST00000314499	human	ensembl	74_37	+1	known	missense	c.1504	p.V502I	0.893	NULL	prints_Cys/Ser-rich_nuc_prot	-	no_errors	CSRNP3	HGNC	ENSG00000178662	tier1	-	-	27	0	0.00	12	12	50.00
LINC00846	0	genome.wustl.edu	37	21	33947970	33947970	+	RNA	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	21	33947970	33947970	G	A	SNP	LINC00846	ENST00000334165	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	LINC00846	HGNC	ENSG00000186842	tier1	-	-	41	0	0.00	15	9	37.50
MUC4	0	genome.wustl.edu	37	3	195515372	195515372	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	3	195515372	195515372	C	T	SNP	MUC4	ENST00000463781	human	ensembl	74_37	-1	known	missense	c.3079	p.V1027I	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EG-like_dom,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	tier1	-	-	86	0	0.00	37	4	9.76
RPF2	0	genome.wustl.edu	37	6	111346637	111346637	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	111346637	111346637	C	G	SNP	RPF2	ENST00000441448	human	ensembl	74_37	+1	known	missense	c.773	p.T258S	1.000	NULL	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	RPF2	HGNC	ENSG00000197498	tier1	-	-	30	0	0.00	13	15	53.57
EYA4	0	genome.wustl.edu	37	6	133804184	133804184	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	133804184	133804184	G	A	SNP	EYA4	ENST00000355167	human	ensembl	74_37	+1	known	nonsense	c.1122	p.W374*	1.000	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA4	HGNC	ENSG00000112319	tier1	-	-	62	0	0.00	34	4	10.53
EYA1	0	genome.wustl.edu	37	8	72246376	72246376	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	8	72246376	72246376	G	T	SNP	EYA1	ENST00000340726	human	ensembl	74_37	-1	known	missense	c.158	p.A53D	1.000	NULL	pfam_HAD-like_dom,superfamily_HAD-like_dom,tigrfam_EYA	-	no_errors	EYA1	HGNC	ENSG00000104313	tier1	-	-	71	0	0.00	53	5	8.62
SMCR5	0	genome.wustl.edu	37	17	17682439	17682442	+	RNA	DEL	ACAC	ACAC	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	ACAC	ACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	17	17682439	17682442	ACAC	-	DEL	SMCR5	ENST00000543475	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.002:0.004:0.000:0.001	-	-	-	no_errors	SMCR5	HGNC	ENSG00000226746	tier1			45	0	0.00	16	8	33.33
ZNF616	0	genome.wustl.edu	37	19	52619626	52619626	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	19	52619626	52619626	G	T	SNP	ZNF616	ENST00000600228	human	ensembl	74_37	-1	known	missense	c.791	p.T264N	0.713	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF616	HGNC	ENSG00000204611	tier1	rs202056241	GMAF=0.0005	52	0	0.00	21	3	12.50
ISOC1	0	genome.wustl.edu	37	5	128440685	128440685	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	5	128440685	128440685	G	T	SNP	ISOC1	ENST00000173527	human	ensembl	74_37	+1	known	missense	c.346	p.V116L	1.000	pfam_Isochorismatase-like,superfamily_Isochorismatase-like	pfam_Isochorismatase-like,superfamily_Isochorismatase-like	-	no_errors	ISOC1	HGNC	ENSG00000066583	tier1	-	-	54	0	0.00	26	4	13.33
NSMCE1	0	genome.wustl.edu	37	16	27245549	27245549	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	16	27245549	27245549	G	A	SNP	NSMCE1	ENST00000361439	human	ensembl	74_37	-1	known	missense	c.296	p.T99M	0.941	pfam_Nse1	pfam_Nse1,pfam_Znf_RING-like,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Znf_RING	-	no_errors	NSMCE1	HGNC	ENSG00000169189	tier1	rs11553886	GMAF=0.0005	71	0	0.00	31	4	11.43
FPGS	0	genome.wustl.edu	37	9	130575476	130575476	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	9	130575476	130575476	C	A	SNP	FPGS	ENST00000373247	human	ensembl	74_37	+1	known	missense	c.1357	p.Q453K	1.000	tigrfam_Folylpolyglutamate_synth	superfamily_Mur_ligase_cen,superfamily_Mur_ligase_C,tigrfam_Folylpolyglutamate_synth	-	no_errors	FPGS	HGNC	ENSG00000136877	tier1	-	-	33	0	0.00	20	3	13.04
EFEMP1	0	genome.wustl.edu	37	2	56103828	56103828	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	2	56103828	56103828	G	T	SNP	EFEMP1	ENST00000355426	human	ensembl	74_37	-1	known	missense	c.810	p.N270K	1.000	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd_dom,smart_EGF-like_Ca-bd_dom,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	EFEMP1	HGNC	ENSG00000115380	tier1	-	-	45	0	0.00	27	3	10.00
CHRNA9	0	genome.wustl.edu	37	4	40356073	40356073	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	4	40356073	40356073	T	C	SNP	CHRNA9	ENST00000310169	human	ensembl	74_37	+1	known	missense	c.976	p.C326R	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA9	HGNC	ENSG00000174343	tier1	-	-	45	0	0.00	14	3	17.65
SYNE1	0	genome.wustl.edu	37	6	152697665	152697665	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	152697665	152697665	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	74_37	-1	known	nonsense	c.9175	p.Q3059*	1.000	superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC1_TM_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	tier1	-	-	103	0	0.00	48	27	36.00
SCAI	0	genome.wustl.edu	37	9	127765856	127765857	+	RNA	INS	-	-	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	9	127765856	127765857	-	A	INS	SCAI	ENST00000487795	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.089:0.025	-	-	-	no_errors	SCAI	HGNC	ENSG00000173611	tier1			27	0	0.00	23	4	14.81
FRK	0	genome.wustl.edu	37	6	116381270	116381270	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	116381270	116381270	G	A	SNP	FRK	ENST00000606080	human	ensembl	74_37	-1	known	missense	c.205	p.L69F	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_SH3_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,pfam_SH2,pfam_SH3_domain,pfam_SH3_2,superfamily_Kinase-like_dom,superfamily_SH3_domain,smart_SH3_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,prints_SH2,prints_SH3_domain	-	no_errors	FRK	HGNC	ENSG00000111816	tier1	-	-	26	0	0.00	15	15	50.00
CCDC60	0	genome.wustl.edu	37	12	119968815	119968815	+	Nonsense_Mutation	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	119968815	119968815	C	T	SNP	CCDC60	ENST00000327554	human	ensembl	74_37	+1	known	nonsense	c.1498	p.Q500*	0.980	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	tier1	-	-	66	0	0.00	46	4	8.00
CHM	0	genome.wustl.edu	37	X	85282554	85282554	+	Silent	SNP	A	A	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	X	85282554	85282554	A	C	SNP	CHM	ENST00000357749	human	ensembl	74_37	-1	known	silent	c.57	p.P19	1.000	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_GDP_dissociation_inhibitor	pfam_GDP_dissociation_inhibitor,pirsf_Rab_geranylTrfase_A_euk,prints_Rab_escort,prints_GDP_dissociation_inhibitor	-	no_errors	CHM	HGNC	ENSG00000188419	tier1	-	-	141	0	0.00	11	67	85.90
CLVS1	0	genome.wustl.edu	37	8	62412295	62412295	+	RNA	DEL	T	T	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	8	62412295	62412295	T	-	DEL	CLVS1	ENST00000518858	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	CLVS1	HGNC	ENSG00000177182	tier1			48	0	0.00	23	2	8.00
AVIL	0	genome.wustl.edu	37	12	58207180	58207180	+	Silent	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	12	58207180	58207180	G	A	SNP	AVIL	ENST00000257861	human	ensembl	74_37	-1	known	silent	c.168	p.S56	1.000	pfam_Gelsolin_dom,smart_Villin/Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Villin/Gelsolin,smart_Villin_headpiece,pfscan_Villin_headpiece,prints_Villin/Gelsolin	-	no_errors	AVIL	HGNC	ENSG00000135407	tier1	-	-	11	0	0.00	269	104	27.88
SPR	0	genome.wustl.edu	37	2	73115591	73115591	+	Silent	SNP	C	C	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	2	73115591	73115591	C	T	SNP	SPR	ENST00000234454	human	ensembl	74_37	+1	known	silent	c.453	p.T151	0.000	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,tigrfam_Sepiapterin_red	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,prints_Glc/ribitol_DH,tigrfam_Sepiapterin_red	-	no_errors	SPR	HGNC	ENSG00000116096	tier1	-	-	54	0	0.00	13	14	51.85
BTN1A1	0	genome.wustl.edu	37	6	26508941	26508941	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	26508941	26508941	G	A	SNP	BTN1A1	ENST00000244513	human	ensembl	74_37	+1	known	missense	c.1120	p.V374M	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,prints_Butyrophylin	pfam_SPRY_rcpt,pfam_Ig_V-set,pfam_CD80_C2-set,superfamily_ConA-like_lec_gl_sf,smart_Ig_sub,smart_Ig_V-set_subgr,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Ig-like_dom,prints_Butyrophylin	-	no_errors	BTN1A1	HGNC	ENSG00000124557	tier1	-	-	44	0	0.00	20	12	37.50
NPAT	0	genome.wustl.edu	37	11	108032182	108032182	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	11	108032182	108032182	G	T	SNP	NPAT	ENST00000278612	human	ensembl	74_37	-1	known	missense	c.3631	p.Q1211K	1.000	NULL	smart_LisH_dimerisation,pfscan_LisH_dimerisation	-	no_errors	NPAT	HGNC	ENSG00000149308	tier1	-	-	88	0	0.00	44	4	8.33
CATSPER1	0	genome.wustl.edu	37	11	65793082	65793082	+	Nonsense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	11	65793082	65793082	G	A	SNP	CATSPER1	ENST00000312106	human	ensembl	74_37	-1	known	nonsense	c.769	p.Q257*	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER1	HGNC	ENSG00000175294	tier1	-	-	18	0	0.00	4	5	55.56
EPDR1	0	genome.wustl.edu	37	7	37960263	37960275	+	Frame_Shift_Del	DEL	AGGCAGTGGCAGC	AGGCAGTGGCAGC	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	AGGCAGTGGCAGC	AGGCAGTGGCAGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	7	37960263	37960275	AGGCAGTGGCAGC	-	DEL	EPDR1	ENST00000559325	human	ensembl	74_37	+1	known	frame_shift_del	c.82_94	p.Q31fs	0.174:0.169:0.163:0.158:0.152:0.146:0.139:0.133:0.126:0.118:0.111:0.103:0.095	NULL	pfam_Ependymin,smart_Ependymin,prints_Ependymin	-	no_errors	EPDR1	HGNC	ENSG00000086289	tier1			NA	NA	NA	NA	NA	NA
NUTM2B	0	genome.wustl.edu	37	10	81463657	81463657	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	10	81463657	81463657	T	C	SNP	NUTM2B	ENST00000429828	human	ensembl	74_37	+1	known	missense	c.292	p.S98P	0.000	NULL	NULL	-	no_errors	NUTM2B	HGNC	ENSG00000188199	tier1	-	-	54	0	0.00	19	7	26.92
SHROOM2	0	genome.wustl.edu	37	X	9862480	9862480	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	X	9862480	9862480	G	A	SNP	SHROOM2	ENST00000380913	human	ensembl	74_37	+1	known	missense	c.532	p.V178I	0.932	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	tier1	-	-	12	0	0.00	2	6	75.00
FOXS1	0	genome.wustl.edu	37	20	30432903	30432903	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	20	30432903	30432903	G	T	SNP	FOXS1	ENST00000375978	human	ensembl	74_37	-1	known	missense	c.443	p.T148N	0.008	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXS1	HGNC	ENSG00000179772	tier1	-	-	47	0	0.00	27	4	12.90
CDV3	0	genome.wustl.edu	37	3	133292940	133292942	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	3	133292940	133292942	AAG	-	DEL	CDV3	ENST00000264993	human	ensembl	74_37	+1	known	in_frame_del	c.52_54	p.K21in_frame_del	1.000:1.000:1.000	NULL	NULL	-	no_errors	CDV3	HGNC	ENSG00000091527	tier1			10	0	0.00	8	2	20.00
SLC35A5	0	genome.wustl.edu	37	3	112300024	112300024	+	Splice_Site	SNP	A	A	G			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	3	112300024	112300024	A	G	SNP	SLC35A5	ENST00000261034	human	ensembl	74_37	+1	known	splice_site	c.590-2	e6-2	0.998	-	-	-	no_errors	SLC35A5	HGNC	ENSG00000138459	tier1	-	-	39	0	0.00	20	6	23.08
DYNC1I1	0	genome.wustl.edu	37	7	95726883	95726883	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	7	95726883	95726883	G	A	SNP	DYNC1I1	ENST00000324972	human	ensembl	74_37	+1	known	missense	c.1916	p.G639D	0.990	NULL	pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DYNC1I1	HGNC	ENSG00000158560	tier1	-	-	43	0	0.00	17	4	19.05
ENSG00000224666	0	genome.wustl.edu	37	6	36359683	36359683	+	RNA	SNP	T	T	G			TCGA-DX-AB36-01A-11D-A417-09	TCGA-DX-AB36-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	7f562dc7-35c9-49e0-8e0c-0832529d5c56	93f73315-178e-4e78-bd48-5523cfe9495e	6	36359683	36359683	T	G	SNP	ENSG00000224666	ENST00000411643	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP1-50J22.4	Clone_based_vega_gene	ENSG00000224666	tier1	-	-	59	0	0.00	38	5	9.80
