Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
XIRP2	0	genome.wustl.edu	37	2	168101135	168101135	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	2	168101135	168101135	G	T	SNP	XIRP2	ENST00000295237	human	ensembl	74_37	+1	known	missense	c.3233	p.S1078I	0.001	NULL	pfam_Actin-binding_Xin_repeat	-	no_errors	XIRP2	HGNC	ENSG00000163092	tier1	-	-	154	0	0.00	133	25	15.82
PTPRVP	0	genome.wustl.edu	37	1	202156135	202156136	+	RNA	INS	-	-	CCTCGCT			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	1	202156135	202156136	-	CCTCGCT	INS	PTPRVP	ENST00000482597	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.022:0.016	-	-	-	no_errors	PTPRVP	HGNC	ENSG00000243323	tier1			NA	NA	NA	NA	NA	NA
SYNJ1	0	genome.wustl.edu	37	21	34003353	34003353	+	Silent	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	21	34003353	34003353	C	T	SNP	SYNJ1	ENST00000433931	human	ensembl	74_37	-1	known	silent	c.4791	p.T1597	0.000	NULL	pfam_Syja_N,pfam_Endo/exonuclease/phosphatase,pfam_DUF1866,superfamily_Endo/exonuclease/phosphatase,smart_IPPc,pfscan_RRM_dom,pfscan_Syja_N	-	no_errors	SYNJ1	HGNC	ENSG00000159082	tier1	-	-	50	0	0.00	43	12	21.82
NOB1	0	genome.wustl.edu	37	16	69783471	69783471	+	Silent	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	16	69783471	69783471	C	T	SNP	NOB1	ENST00000268802	human	ensembl	74_37	-1	known	silent	c.390	p.L130	0.997	pirsf_D-site_20S_pre-rRNA_nuclease	pfam_NOB1_Zn-bd,smart_PIN_dom,pirsf_D-site_20S_pre-rRNA_nuclease	-	no_errors	NOB1	HGNC	ENSG00000141101	tier1	-	-	89	0	0.00	108	39	26.53
HMCES	0	genome.wustl.edu	37	3	129017344	129017344	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	3	129017344	129017344	G	A	SNP	HMCES	ENST00000383463	human	ensembl	74_37	+1	known	missense	c.601	p.D201N	1.000	pfam_DUF159,superfamily_DUF159	pfam_DUF159,superfamily_DUF159	-	no_errors	HMCES	HGNC	ENSG00000183624	tier1	-	-	29	0	0.00	52	11	17.46
KRTAP2-2	0	genome.wustl.edu	37	17	39211139	39211140	+	In_Frame_Ins	INS	-	-	GCAGGGGGGCCGGCA			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	39211139	39211140	-	GCAGGGGGGCCGGCA	INS	KRTAP2-2	ENST00000542910	human	ensembl	74_37	-1	known	in_frame_ins	c.325_324	p.108in_frame_insCRPPC	1.000:1.000	NULL	pfam_Keratin-assoc	-	no_errors	KRTAP2-2	HGNC	ENSG00000214518	tier1			NA	NA	NA	NA	NA	NA
ESX1	0	genome.wustl.edu	37	X	103495558	103495558	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	X	103495558	103495558	C	A	SNP	ESX1	ENST00000372588	human	ensembl	74_37	-1	known	missense	c.572	p.R191I	0.885	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom	pfam_Homeobox_dom,superfamily_Homeodomain-like,smart_Homeobox_dom,pfscan_Homeobox_dom,prints_POU	-	no_errors	ESX1	HGNC	ENSG00000123576	tier1	-	-	31	0	0.00	8	8	50.00
SLCO6A1	0	genome.wustl.edu	37	5	101834502	101834502	+	Nonsense_Mutation	SNP	G	G	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	5	101834502	101834502	G	C	SNP	SLCO6A1	ENST00000379807	human	ensembl	74_37	-1	known	nonsense	c.47	p.S16*	0.000	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal_dom,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO6A1	HGNC	ENSG00000205359	tier1	-	-	62	0	0.00	79	18	18.56
NOB1	0	genome.wustl.edu	37	16	69782853	69782853	+	Splice_Site	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	16	69782853	69782853	C	T	SNP	NOB1	ENST00000569871	human	ensembl	74_37	-1	known	splice_site	c.201+1	e3+1	0.997	-	-	-	no_errors	NOB1	HGNC	ENSG00000141101	tier1	-	-	24	0	0.00	39	13	25.00
TRIO	0	genome.wustl.edu	37	5	14368832	14368832	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	5	14368832	14368832	G	A	SNP	TRIO	ENST00000344204	human	ensembl	74_37	+1	known	missense	c.2890	p.A964T	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_DH-domain,pfam_Prot_kinase_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_dom,pfscan_Ig-like_dom,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	tier1	rs139892017	-	19	0	0.00	17	7	29.17
CEP152	0	genome.wustl.edu	37	15	49074367	49074367	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	15	49074367	49074367	G	A	SNP	CEP152	ENST00000380950	human	ensembl	74_37	-1	known	missense	c.1382	p.A461V	0.001	NULL	NULL	-	no_errors	CEP152	HGNC	ENSG00000103995	tier1	-	-	36	0	0.00	26	4	13.33
MSH3	0	genome.wustl.edu	37	5	79950742	79950750	+	In_Frame_Del	DEL	CCCCCAGCT	CCCCCAGCT	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	CCCCCAGCT	CCCCCAGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	5	79950742	79950750	CCCCCAGCT	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	in_frame_del	c.196_204	p.PAP67in_frame_del	0.890:0.802:0.715:0.628:0.541:0.455:0.369:0.282:0.196	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1			NA	NA	NA	NA	NA	NA
NOB1	0	genome.wustl.edu	37	16	69782876	69782876	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	16	69782876	69782876	C	T	SNP	NOB1	ENST00000268802	human	ensembl	74_37	-1	known	missense	c.671	p.C224Y	0.399	pirsf_D-site_20S_pre-rRNA_nuclease	pfam_NOB1_Zn-bd,smart_PIN_dom,pirsf_D-site_20S_pre-rRNA_nuclease	-	no_errors	NOB1	HGNC	ENSG00000141101	tier1	-	-	26	0	0.00	37	14	27.45
MED12	0	genome.wustl.edu	37	X	70350024	70350024	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	X	70350024	70350024	G	T	SNP	MED12	ENST00000333646	human	ensembl	74_37	+1	known	missense	c.4007	p.G1336V	1.000	NULL	pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12	-	no_errors	MED12	HGNC	ENSG00000184634	tier1	-	-	43	0	0.00	33	4	10.81
CD163L1	0	genome.wustl.edu	37	12	7559146	7559146	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	12	7559146	7559146	C	T	SNP	CD163L1	ENST00000313599	human	ensembl	74_37	-1	known	missense	c.1069	p.V357M	0.960	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,pfscan_SRCR,prints_SRCR	-	no_errors	CD163L1	HGNC	ENSG00000177675	tier1	-	-	63	0	0.00	52	6	10.34
WIF1	0	genome.wustl.edu	37	12	65448915	65448915	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	12	65448915	65448915	C	A	SNP	WIF1	ENST00000286574	human	ensembl	74_37	-1	known	missense	c.1001	p.G334V	1.000	pfam_EGF_extracell,smart_EG-like_dom,pfscan_EG-like_dom	pfam_WIF,pfam_EGF_extracell,smart_WIF,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_WIF,prints_Wnt-inh	-	no_errors	WIF1	HGNC	ENSG00000156076	tier1	-	-	38	0	0.00	40	4	9.09
CAPRIN2	0	genome.wustl.edu	37	12	30884415	30884415	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	12	30884415	30884415	A	C	SNP	CAPRIN2	ENST00000251071	human	ensembl	74_37	-1	known	missense	c.922	p.L308V	0.998	NULL	pfam_Caprin-1_C,pfam_C1q,superfamily_Tumour_necrosis_fac-like_dom,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	CAPRIN2	HGNC	ENSG00000110888	tier1	-	-	60	0	0.00	45	11	19.64
TUT1	0	genome.wustl.edu	37	11	62342591	62342591	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	11	62342591	62342591	G	-	DEL	TUT1	ENST00000308436	human	ensembl	74_37	-1	known	frame_shift_del	c.2714	p.P905fs	1.000	NULL	pfam_PAP_assoc,pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	TUT1	HGNC	ENSG00000149016	tier1			67	0	0.00	50	20	28.57
ADAM12	0	genome.wustl.edu	37	10	127824045	127824045	+	RNA	DEL	G	G	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	10	127824045	127824045	G	-	DEL	ADAM12	ENST00000494661	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	ADAM12	HGNC	ENSG00000148848	tier1			9	0	0.00	5	8	61.54
SCARA5	0	genome.wustl.edu	37	8	27729476	27729476	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	8	27729476	27729476	G	A	SNP	SCARA5	ENST00000354914	human	ensembl	74_37	-1	known	missense	c.1463	p.A488V	1.000	pfam_SRCR,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	pfam_SRCR,pfam_Collagen,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_SRCR,pfscan_SRCR	-	no_errors	SCARA5	HGNC	ENSG00000168079	tier1	-	-	46	0	0.00	42	4	8.70
STK24	0	genome.wustl.edu	37	13	99171640	99171655	+	Frame_Shift_Del	DEL	TGTCAATGCCTTTGAA	TGTCAATGCCTTTGAA	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	TGTCAATGCCTTTGAA	TGTCAATGCCTTTGAA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	13	99171640	99171655	TGTCAATGCCTTTGAA	-	DEL	STK24	ENST00000376547	human	ensembl	74_37	-1	known	frame_shift_del	c.166_151	p.F51fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	STK24	HGNC	ENSG00000102572	tier1			NA	NA	NA	NA	NA	NA
PPP2R5C	0	genome.wustl.edu	37	14	102368201	102368201	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	14	102368201	102368201	A	C	SNP	PPP2R5C	ENST00000422945	human	ensembl	74_37	+1	known	missense	c.1091	p.K364T	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_errors	PPP2R5C	HGNC	ENSG00000078304	tier1	-	-	67	0	0.00	56	25	30.86
C17orf76-AS1	0	genome.wustl.edu	37	17	16342302	16342302	+	RNA	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	16342302	16342302	G	A	SNP	C17orf76-AS1	ENST00000475947	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C17orf76-AS1	HGNC	ENSG00000175061	tier1	-	-	44	0	0.00	40	11	21.57
ZNF292	0	genome.wustl.edu	37	6	87943156	87943156	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	6	87943156	87943156	C	T	SNP	ZNF292	ENST00000369577	human	ensembl	74_37	+1	known	missense	c.652	p.H218Y	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF292	HGNC	ENSG00000188994	tier1	-	-	123	0	0.00	103	30	22.56
C1orf173	0	genome.wustl.edu	37	1	75037175	75037175	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	1	75037175	75037175	C	T	SNP	C1orf173	ENST00000326665	human	ensembl	74_37	-1	known	missense	c.4219	p.E1407K	0.698	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	tier1	-	-	25	0	0.00	11	5	31.25
RNF213	0	genome.wustl.edu	37	17	78272139	78272139	+	Silent	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	78272139	78272139	G	A	SNP	RNF213	ENST00000582970	human	ensembl	74_37	+1	known	silent	c.2031	p.V677	0.000	NULL	superfamily_P-loop_NTPase,smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC	ENSG00000173821	tier1	-	-	20	0	0.00	45	14	23.73
HTR3B	0	genome.wustl.edu	37	11	113780025	113780025	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	11	113780025	113780025	G	T	SNP	HTR3B	ENST00000260191	human	ensembl	74_37	+1	known	missense	c.61	p.A21S	0.007	prints_5HT3_rcpt_B,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_5HT3_rcpt_B,prints_5HT3_rcpt,prints_Neur_channel,prints_5HT3_rcpt_A,tigrfam_Neur_channel	-	no_errors	HTR3B	HGNC	ENSG00000149305	tier1	-	-	56	0	0.00	31	4	11.43
INTU	0	genome.wustl.edu	37	4	128635153	128635153	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	4	128635153	128635153	C	A	SNP	INTU	ENST00000335251	human	ensembl	74_37	+1	known	missense	c.2622	p.N874K	0.497	NULL	superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	INTU	HGNC	ENSG00000164066	tier1	-	-	131	0	0.00	112	28	19.86
QSER1	0	genome.wustl.edu	37	11	32955585	32955585	+	Silent	SNP	C	C	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	11	32955585	32955585	C	A	SNP	QSER1	ENST00000399302	human	ensembl	74_37	+1	known	silent	c.2394	p.L798	0.664	NULL	NULL	-	no_errors	QSER1	HGNC	ENSG00000060749	tier1	-	-	34	0	0.00	38	8	17.39
DRD3	0	genome.wustl.edu	37	3	113850156	113850156	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	3	113850156	113850156	C	A	SNP	DRD3	ENST00000383673	human	ensembl	74_37	-1	known	missense	c.815	p.R272I	0.002	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_7TM,prints_Dopamine_D3_rcpt,prints_GPCR_Rhodpsn,prints_Dopamine_rcpt	-	no_errors	DRD3	HGNC	ENSG00000151577	tier1	-	-	32	0	0.00	31	6	16.22
PTCHD3	0	genome.wustl.edu	37	10	27702334	27702334	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	10	27702334	27702334	G	T	SNP	PTCHD3	ENST00000438700	human	ensembl	74_37	-1	known	missense	c.846	p.S282R	0.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD3	HGNC	ENSG00000182077	tier1	-	-	30	0	0.00	37	4	9.76
HSD17B2	0	genome.wustl.edu	37	16	82131683	82131683	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	16	82131683	82131683	T	A	SNP	HSD17B2	ENST00000199936	human	ensembl	74_37	+1	known	missense	c.806	p.I269N	0.026	prints_Glc/ribitol_DH	pfam_DH_sc/Rdtase_SDR,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	HSD17B2	HGNC	ENSG00000086696	tier1	-	-	33	0	0.00	47	16	25.40
LOC101927060	0	genome.wustl.edu	37	17	45177320	45177321	+	RNA	INS	-	-	CGGCCC			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	45177320	45177321	-	CGGCCC	INS	LOC101927060	ENST00000571665	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.380:0.408	-	-	-	no_errors	RP11-156P1.3	Clone_based_vega_gene	ENSG00000262879	tier1			NA	NA	NA	NA	NA	NA
SCARB1	0	genome.wustl.edu	37	12	125270910	125270910	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	12	125270910	125270910	C	A	SNP	SCARB1	ENST00000415380	human	ensembl	74_37	-1	known	missense	c.1394	p.R465L	0.958	pfam_CD36	pfam_CD36,prints_CD36,prints_CD36_antigen	-	no_errors	SCARB1	HGNC	ENSG00000073060	tier1	-	-	24	0	0.00	31	4	11.43
TBX18	0	genome.wustl.edu	37	6	85447068	85447068	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	6	85447068	85447068	G	A	SNP	TBX18	ENST00000369663	human	ensembl	74_37	-1	known	missense	c.1159	p.P387S	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX18	HGNC	ENSG00000112837	tier1	-	-	55	0	0.00	58	10	14.71
PADI1	0	genome.wustl.edu	37	1	17531793	17531793	+	Silent	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	1	17531793	17531793	G	A	SNP	PADI1	ENST00000375471	human	ensembl	74_37	+1	known	silent	c.81	p.V27	0.917	pfam_PAD_N,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI1	HGNC	ENSG00000142623	tier1	-	-	57	0	0.00	42	24	36.36
CSN1S1	0	genome.wustl.edu	37	4	70800429	70800429	+	Splice_Site	SNP	G	G	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	4	70800429	70800429	G	T	SNP	CSN1S1	ENST00000246891	human	ensembl	74_37	+1	known	splice_site	c.105+1	e3+1	0.990	-	-	-	no_errors	CSN1S1	HGNC	ENSG00000126545	tier1	-	-	35	0	0.00	21	6	22.22
TJP1	0	genome.wustl.edu	37	15	30033627	30033627	+	Silent	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	15	30033627	30033627	C	T	SNP	TJP1	ENST00000346128	human	ensembl	74_37	-1	known	silent	c.1164	p.V388	0.980	prints_ZonOcculS1	pfam_PDZ,pfam_ZU5,pfam_GK/Ca_channel_bsu,pfam_SH3_2,superfamily_PDZ,superfamily_P-loop_NTPase,superfamily_SH3_domain,smart_PDZ,smart_GK/Ca_channel_bsu,smart_ZU5,pfscan_PDZ,pfscan_SH3_domain,pfscan_ZU5,pfscan_Guanylate_kin-like,prints_ZonOcculS1,prints_ZonOcculdens	-	no_errors	TJP1	HGNC	ENSG00000104067	tier1	-	-	49	0	0.00	44	5	10.20
TGM5	0	genome.wustl.edu	37	15	43531082	43531082	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	15	43531082	43531082	A	-	DEL	TGM5	ENST00000220420	human	ensembl	74_37	-1	known	frame_shift_del	c.1278	p.F426fs	0.003	NULL	pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like	-	no_errors	TGM5	HGNC	ENSG00000104055	tier1			22	0	0.00	12	2	14.29
ZBTB41	0	genome.wustl.edu	37	1	197128578	197128578	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	1	197128578	197128578	G	A	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	missense	c.2641	p.P881S	1.000	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	tier1	-	-	89	0	0.00	71	37	34.26
NUDT21	0	genome.wustl.edu	37	16	56480573	56480573	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	16	56480573	56480573	C	T	SNP	NUDT21	ENST00000300291	human	ensembl	74_37	-1	known	missense	c.346	p.D116N	1.000	superfamily_NUDIX_hydrolase_dom-like,pirsf_Cleav_polyA_spec_factor_su5	superfamily_NUDIX_hydrolase_dom-like,pirsf_Cleav_polyA_spec_factor_su5	-	no_errors	NUDT21	HGNC	ENSG00000167005	tier1	-	-	129	0	0.00	142	42	22.83
GDPD2	0	genome.wustl.edu	37	X	69644894	69644894	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	X	69644894	69644894	C	G	SNP	GDPD2	ENST00000453994	human	ensembl	74_37	+1	known	missense	c.60	p.S20R	1.000	NULL	pfam_GlyceroP-diester-Pdiesterase,superfamily_PLC-like_Pdiesterase_TIM-brl	-	no_errors	GDPD2	HGNC	ENSG00000130055	tier1	-	-	70	0	0.00	78	27	25.71
RELN	0	genome.wustl.edu	37	7	103183261	103183261	+	Silent	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	7	103183261	103183261	G	A	SNP	RELN	ENST00000424685	human	ensembl	74_37	-1	known	silent	c.6588	p.I2196	1.000	superfamily_Sialidases	pfam_EGF_extracell,pfam_Reeler_dom,pfam_BNR_rpt,superfamily_Sialidases,superfamily_Growth_fac_rcpt_N_dom,smart_EG-like_dom,pfscan_EG-like_dom,pfscan_Reeler_dom	-	no_errors	RELN	HGNC	ENSG00000189056	tier1	-	-	91	0	0.00	78	36	31.58
ENSG00000261096	0	genome.wustl.edu	37	2	232677017	232677018	+	RNA	INS	-	-	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	2	232677017	232677018	-	A	INS	ENSG00000261096	ENST00000563949	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.014:0.017	-	-	-	no_errors	RP11-690I21.2	Clone_based_vega_gene	ENSG00000261096	tier1			22	0	0.00	22	4	15.38
POLQ	0	genome.wustl.edu	37	3	121168204	121168204	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	3	121168204	121168204	C	A	SNP	POLQ	ENST00000264233	human	ensembl	74_37	-1	known	missense	c.7222	p.D2408Y	1.000	pfam_DNA-dir_DNA_pol_A_palm_dom,smart_DNA-dir_DNA_pol_A_palm_dom	pfam_DNA-dir_DNA_pol_A_palm_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_RNaseH-like_dom,smart_Helicase_ATP-bd,smart_Helicase_C,smart_DNA-dir_DNA_pol_A_palm_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_DNA_polymerase_A	-	no_errors	POLQ	HGNC	ENSG00000051341	tier1	-	-	69	0	0.00	79	29	26.85
ZBTB41	0	genome.wustl.edu	37	1	197128821	197128821	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	1	197128821	197128821	G	C	SNP	ZBTB41	ENST00000367405	human	ensembl	74_37	-1	known	missense	c.2398	p.Q800E	0.994	NULL	pfam_Znf_C2H2,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB41	HGNC	ENSG00000177888	tier1	-	-	80	0	0.00	53	21	28.38
CLNK	0	genome.wustl.edu	37	4	10566314	10566314	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	4	10566314	10566314	G	C	SNP	CLNK	ENST00000226951	human	ensembl	74_37	-1	known	missense	c.380	p.T127R	0.000	NULL	pfam_SH2,smart_SH2,pfscan_SH2,prints_SH2	-	no_errors	CLNK	HGNC	ENSG00000109684	tier1	-	-	53	0	0.00	62	9	12.68
ZDBF2	0	genome.wustl.edu	37	2	207175936	207175936	+	Silent	SNP	G	G	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	2	207175936	207175936	G	T	SNP	ZDBF2	ENST00000374423	human	ensembl	74_37	+1	known	silent	c.6684	p.S2228	0.152	NULL	pfam_Znf_DBF,smart_Znf_DBF	-	no_errors	ZDBF2	HGNC	ENSG00000204186	tier1	-	-	105	0	0.00	121	17	12.32
AQP4	0	genome.wustl.edu	37	18	24436262	24436262	+	Silent	SNP	T	T	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	18	24436262	24436262	T	C	SNP	AQP4	ENST00000383168	human	ensembl	74_37	-1	known	silent	c.885	p.K295	1.000	NULL	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,tigrfam_MIP	-	no_errors	AQP4	HGNC	ENSG00000171885	tier1	-	-	55	0	0.00	53	14	20.90
ARAP2	0	genome.wustl.edu	37	4	36148956	36148956	+	Silent	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	4	36148956	36148956	C	T	SNP	ARAP2	ENST00000303965	human	ensembl	74_37	-1	known	silent	c.3225	p.G1075	0.995	smart_Pleckstrin_homology	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_ArfGAP,pfam_SAM_type1,pfam_SAM_2,pfam_Ras-assoc,superfamily_Rho_GTPase_activation_prot,superfamily_SAM/pointed,smart_SAM,smart_Pleckstrin_homology,smart_ArfGAP,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_Ras-assoc,pfscan_SAM,pfscan_ArfGAP,pfscan_RhoGAP_dom,prints_ArfGAP	-	no_errors	ARAP2	HGNC	ENSG00000047365	tier1	-	-	166	0	0.00	146	26	15.12
ADAM15	0	genome.wustl.edu	37	1	155030473	155030473	+	Silent	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	1	155030473	155030473	C	T	SNP	ADAM15	ENST00000356955	human	ensembl	74_37	+1	known	silent	c.1563	p.H521	0.081	pfam_ADAM_Cys-rich,smart_ADAM_Cys-rich	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Blood-coag_inhib_Disintegrin,pfam_Peptidase_M12B_N,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_EG-like_dom,pfscan_Peptidase_M12B	-	no_errors	ADAM15	HGNC	ENSG00000143537	tier1	-	-	29	0	0.00	40	4	9.09
AKAP10	0	genome.wustl.edu	37	17	19866275	19866275	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	19866275	19866275	G	C	SNP	AKAP10	ENST00000225737	human	ensembl	74_37	-1	known	missense	c.197	p.A66G	1.000	NULL	pfam_RGS_dom,superfamily_Regulat_G_prot_signal_superfam,smart_Regulat_G_prot_signal_superfam,pfscan_Regulat_G_prot_signal_superfam	-	no_errors	AKAP10	HGNC	ENSG00000108599	tier1	-	-	81	0	0.00	91	27	22.88
WBP11P1	0	genome.wustl.edu	37	18	30092568	30092568	+	RNA	SNP	T	T	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	18	30092568	30092568	T	C	SNP	WBP11P1	ENST00000567636	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389	tier1	-	-	13	0	0.00	14	10	41.67
POTEC	0	genome.wustl.edu	37	18	14538212	14538212	+	Silent	SNP	T	T	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	18	14538212	14538212	T	A	SNP	POTEC	ENST00000358970	human	ensembl	74_37	-1	known	silent	c.558	p.S186	0.863	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	POTEC	HGNC	ENSG00000183206	tier1	-	-	29	0	0.00	10	12	54.55
OR51A4	0	genome.wustl.edu	37	11	4967847	4967847	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	11	4967847	4967847	G	T	SNP	OR51A4	ENST00000380373	human	ensembl	74_37	-1	known	missense	c.484	p.P162T	0.041	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR51A4	HGNC	ENSG00000205497	tier1	-	-	106	0	0.00	80	21	20.79
SLC35G5	0	genome.wustl.edu	37	8	11188715	11188715	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	8	11188715	11188715	T	A	SNP	SLC35G5	ENST00000382435	human	ensembl	74_37	+1	known	missense	c.100	p.S34T	0.727	NULL	pfam_DMT	-	no_errors	SLC35G5	HGNC	ENSG00000177710	tier1	-	-	120	0	0.00	97	17	14.91
TRIM4	0	genome.wustl.edu	37	7	99490311	99490311	+	Silent	SNP	C	C	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	7	99490311	99490311	C	A	SNP	TRIM4	ENST00000355947	human	ensembl	74_37	-1	known	silent	c.978	p.G326	0.994	superfamily_ConA-like_lec_gl_sf,pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl_sf,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM4	HGNC	ENSG00000146833	tier1	-	-	36	0	0.00	29	16	35.56
PTMAP5	0	genome.wustl.edu	37	13	82264345	82264345	+	RNA	SNP	C	C	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	13	82264345	82264345	C	A	SNP	PTMAP5	ENST00000607242	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.708	-	-	-	no_errors	PTMAP5	HGNC	ENSG00000214182	tier1	-	-	71	0	0.00	31	10	24.39
METTL23	0	genome.wustl.edu	37	17	74725851	74725851	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	74725851	74725851	C	G	SNP	METTL23	ENST00000341249	human	ensembl	74_37	+1	known	missense	c.59	p.S20C	0.072	pfam_Nicotinamide_N-MeTfrase-like	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL23	HGNC	ENSG00000181038	tier1	-	-	76	0	0.00	106	12	10.08
GTF3C1	0	genome.wustl.edu	37	16	27512569	27512569	+	Silent	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	16	27512569	27512569	C	T	SNP	GTF3C1	ENST00000356183	human	ensembl	74_37	-1	known	silent	c.2004	p.E668	1.000	NULL	pfam_TFIIIC_Bblock-bd	-	no_errors	GTF3C1	HGNC	ENSG00000077235	tier1	-	-	36	0	0.00	37	10	21.28
BIRC6	0	genome.wustl.edu	37	2	32582523	32582523	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	2	32582523	32582523	G	-	DEL	BIRC6	ENST00000421745	human	ensembl	74_37	+1	known	frame_shift_del	c.294	p.A100fs	0.996	superfamily_WD40_repeat_dom	pfam_DUF3643,pfam_UBQ-conjugat_E2,pfam_BIR,pfam_UEV_N,superfamily_UBQ-conjugating_enzyme/RWD,superfamily_Galactose-bd-like,superfamily_WD40_repeat_dom,smart_BIR,pfscan_BIR,pfscan_UBQ-conjugat_E2	-	no_errors	BIRC6	HGNC	ENSG00000115760	tier1			10	0	0.00	12	2	14.29
VTN	0	genome.wustl.edu	37	17	26696816	26696816	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	26696816	26696816	C	T	SNP	VTN	ENST00000226218	human	ensembl	74_37	-1	known	missense	c.241	p.G81S	0.000	NULL	pfam_Hemopexin-like_repeat,pfam_Somatomedin_B_dom,superfamily_Hemopexin-like_dom,smart_Somatomedin_B_dom,smart_Hemopexin-like_repeat,pfscan_Somatomedin_B_dom,prints_Somatomedin_B_chordata	-	no_errors	VTN	HGNC	ENSG00000109072	tier1	-	-	8	0	0.00	7	9	56.25
C17orf76-AS1	0	genome.wustl.edu	37	17	16342828	16342828	+	RNA	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	16342828	16342828	G	A	SNP	C17orf76-AS1	ENST00000365172	human	ensembl	74_37	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	C17orf76-AS1	HGNC	ENSG00000175061	tier1	-	-	81	0	0.00	97	27	21.77
C17orf76-AS1	0	genome.wustl.edu	37	17	16342498	16342498	+	RNA	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	16342498	16342498	G	A	SNP	C17orf76-AS1	ENST00000470491	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C17orf76-AS1	HGNC	ENSG00000175061	tier1	-	-	66	0	0.00	78	16	17.02
SLC9C2	0	genome.wustl.edu	37	1	173556926	173556926	+	Missense_Mutation	SNP	A	A	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	1	173556926	173556926	A	T	SNP	SLC9C2	ENST00000367714	human	ensembl	74_37	-1	known	missense	c.401	p.I134K	0.001	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753	tier1	-	-	115	0	0.00	89	66	42.58
MORF4L1	0	genome.wustl.edu	37	15	79189830	79189830	+	RNA	SNP	G	G	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	15	79189830	79189830	G	T	SNP	MORF4L1	ENST00000561171	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MORF4L1	HGNC	ENSG00000185787	tier1	-	-	33	0	0.00	48	5	9.43
LOC101927905	0	genome.wustl.edu	37	12	8388156	8388156	+	RNA	SNP	G	G	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	12	8388156	8388156	G	C	SNP	LOC101927905	ENST00000304751	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	RP11-266K4.9	Clone_based_vega_gene	ENSG00000215241	tier1	-	-	144	0	0.00	112	19	14.50
APC	0	genome.wustl.edu	37	5	112178997	112178997	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	5	112178997	112178997	G	A	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.7706	p.S2569N	1.000	pfam_APC_basic_dom	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	tier1	-	-	38	0	0.00	29	16	35.56
ERCC5	0	genome.wustl.edu	37	13	103498672	103498672	+	Missense_Mutation	SNP	C	C	G			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	13	103498672	103498672	C	G	SNP	ERCC5	ENST00000355739	human	ensembl	74_37	+1	known	missense	c.56	p.P19R	1.000	pfam_XPG_DNA_repair_N,smart_XPG_DNA_repair_N,prints_XPG/Rad2_eukaryotes,tigrfam_XPG/Rad2_eukaryotes	pfam_XPG_DNA_repair_N,pfam_XPG-I_dom,superfamily_5-3_exonuclease_C,smart_XPG_DNA_repair_N,smart_XPG-I_dom,smart_HhH2,prints_XPG/Rad2_eukaryotes,prints_XPG/Rad2,tigrfam_XPG/Rad2_eukaryotes	-	no_errors	ERCC5	HGNC	ENSG00000134899	tier1	-	-	243	0	0.00	166	64	27.83
CNIH3	0	genome.wustl.edu	37	1	224872522	224872522	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	1	224872522	224872522	C	T	SNP	CNIH3	ENST00000272133	human	ensembl	74_37	+1	known	missense	c.175	p.R59C	1.000	NULL	pfam_Cornichon	-	no_errors	CNIH3	HGNC	ENSG00000143786	tier1	-	-	49	0	0.00	37	23	38.33
ATRX	0	genome.wustl.edu	37	X	76874272	76874272	+	Splice_Site	SNP	A	A	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	X	76874272	76874272	A	T	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	splice_site	c.5448+2	e21+2	1.000	-	-	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	112	0	0.00	49	17	25.76
PLS1	0	genome.wustl.edu	37	3	142405129	142405129	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	3	142405129	142405129	T	A	SNP	PLS1	ENST00000337777	human	ensembl	74_37	+1	known	missense	c.892	p.S298T	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	pfam_CH-domain,pfam_EF_hand_dom,superfamily_CH-domain,smart_EF_hand_dom,smart_CH-domain,pfscan_CH-domain,pfscan_EF_hand_dom	-	no_errors	PLS1	HGNC	ENSG00000120756	tier1	-	-	86	0	0.00	105	25	19.23
ATP1A4	0	genome.wustl.edu	37	1	160156148	160156148	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	1	160156148	160156148	C	T	SNP	ATP1A4	ENST00000368081	human	ensembl	74_37	+1	known	missense	c.3052	p.H1018Y	0.000	tigrfam_ATPase_P-typ_Na/K_IIC	pfam_ATPase_P-typ_transduc_dom_A,pfam_ATPase_P-typ_cation-transptr_C,pfam_HAD-like_dom,pfam_ATPase_P-typ_cation-transptr_N,superfamily_ATPase_P-typ_cyto_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_Cation_transp_P_typ_ATPase,tigrfam_ATPase_P-typ_Na/K_IIC,tigrfam_Cation_transp_P_typ_ATPase	-	no_errors	ATP1A4	HGNC	ENSG00000132681	tier1	-	-	17	0	0.00	12	6	33.33
GNL3	0	genome.wustl.edu	37	3	52727524	52727524	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	3	52727524	52727524	G	T	SNP	GNL3	ENST00000418458	human	ensembl	74_37	+1	known	nonsense	c.1288	p.E430*	0.999	NULL	pfam_Gnl3_N_dom,pfam_GTP_binding_domain,superfamily_P-loop_NTPase	-	no_errors	GNL3	HGNC	ENSG00000163938	tier1	-	-	46	0	0.00	26	4	13.33
JPH1	0	genome.wustl.edu	37	8	75227251	75227251	+	Silent	SNP	C	C	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	8	75227251	75227251	C	T	SNP	JPH1	ENST00000342232	human	ensembl	74_37	-1	known	silent	c.984	p.E328	1.000	pirsf_Junctophilin	pfam_MORN,smart_MORN,pirsf_Junctophilin	-	no_errors	JPH1	HGNC	ENSG00000104369	tier1	-	-	38	0	0.00	23	10	30.30
METTL21C	0	genome.wustl.edu	37	13	103343313	103343313	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	13	103343313	103343313	T	A	SNP	METTL21C	ENST00000267273	human	ensembl	74_37	-1	known	missense	c.132	p.E44D	0.001	NULL	pfam_Nicotinamide_N-MeTfrase-like	-	no_errors	METTL21C	HGNC	ENSG00000139780	tier1	-	-	47	0	0.00	39	11	22.00
POM121L2	0	genome.wustl.edu	37	6	27276926	27276926	+	Silent	SNP	A	A	C			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	6	27276926	27276926	A	C	SNP	POM121L2	ENST00000444565	human	ensembl	74_37	-1	known	silent	c.3024	p.S1008	0.439	NULL	NULL	-	no_errors	POM121L2	HGNC	ENSG00000158553	tier1	-	-	69	0	0.00	51	24	32.00
TMEM229A	0	genome.wustl.edu	37	7	123672457	123672459	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	GCT	GCT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	7	123672457	123672459	GCT	-	DEL	TMEM229A	ENST00000455783	human	ensembl	74_37	-1	known	in_frame_del	c.601_599	p.Q200in_frame_del	0.000:0.000:0.001	NULL	NULL	-	no_errors	TMEM229A	HGNC	ENSG00000234224	tier1			9	0	0.00	8	2	20.00
APOB	0	genome.wustl.edu	37	2	21229754	21229754	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	2	21229754	21229754	A	G	SNP	APOB	ENST00000233242	human	ensembl	74_37	-1	known	missense	c.9986	p.I3329T	0.142	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	tier1	-	-	48	0	0.00	44	8	15.38
OR4K14	0	genome.wustl.edu	37	14	20482732	20482732	+	Silent	SNP	A	A	T			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	14	20482732	20482732	A	T	SNP	OR4K14	ENST00000305045	human	ensembl	74_37	-1	known	silent	c.621	p.L207	0.001	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4K14	HGNC	ENSG00000169484	tier1	-	-	64	0	0.00	23	9	28.12
ENSG00000228302	0	genome.wustl.edu	37	10	12289026	12289028	+	RNA	DEL	TCC	TCC	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	10	12289026	12289028	TCC	-	DEL	ENSG00000228302	ENST00000421657	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.001:0.002	-	-	-	no_errors	RP11-186N15.3	Clone_based_vega_gene	ENSG00000228302	tier1			10	0	0.00	5	5	50.00
ENSG00000245156	0	genome.wustl.edu	37	11	66039143	66039143	+	RNA	DEL	A	A	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	11	66039143	66039143	A	-	DEL	ENSG00000245156	ENST00000501708	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.020	-	-	-	no_errors	RP11-867G23.3	Clone_based_vega_gene	ENSG00000245156	tier1			22	0	0.00	24	5	17.24
MSH3	0	genome.wustl.edu	37	5	79950700	79950717	+	In_Frame_Del	DEL	GCAGCGGCTGCAGCGGCC	GCAGCGGCTGCAGCGGCC	-			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	GCAGCGGCTGCAGCGGCC	GCAGCGGCTGCAGCGGCC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	5	79950700	79950717	GCAGCGGCTGCAGCGGCC	-	DEL	MSH3	ENST00000265081	human	ensembl	74_37	+1	known	in_frame_del	c.154_171	p.AAAAAA55in_frame_del	0.640:0.607:0.574:0.541:0.508:0.474:0.440:0.406:0.372:0.338:0.304:0.271:0.238:0.205:0.172:0.140:0.107:0.075	NULL	pfam_DNA_mismatch_repair_MutS_C,pfam_DNA_mismatch_repair_MutS_core,pfam_DNA_mmatch_repair_MutS_con_dom,pfam_DNA_mismatch_repair_MutS-lik_N,pfam_DNA_mismatch_repair_MutS_clamp,superfamily_DNA_mismatch_repair_MutS_core,superfamily_P-loop_NTPase,superfamily_DNA_mismatch_repair_MutS_N,superfamily_DNA_mmatch_repair_MutS_con_dom,smart_DNA_mismatch_repair_MutS_core,smart_DNA_mismatch_repair_MutS_C	-	no_errors	MSH3	HGNC	ENSG00000113318	tier1			NA	NA	NA	NA	NA	NA
C17orf76-AS1	0	genome.wustl.edu	37	17	16343502	16343502	+	RNA	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	17	16343502	16343502	G	A	SNP	C17orf76-AS1	ENST00000460249	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.052	-	-	-	no_errors	C17orf76-AS1	HGNC	ENSG00000175061	tier1	-	-	56	0	0.00	84	23	21.50
MAS1L	0	genome.wustl.edu	37	6	29455533	29455533	+	Silent	SNP	G	G	A			TCGA-DX-AB37-01A-11D-A417-09	TCGA-DX-AB37-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	15076dc6-beed-4d04-be1d-56f27a846f2b	a997a9b9-974e-4494-b473-f7f442843b4c	6	29455533	29455533	G	A	SNP	MAS1L	ENST00000377127	human	ensembl	74_37	-1	known	silent	c.147	p.G49	0.003	NULL	pfam_GPCR_Rhodpsn,prints_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM	-	no_errors	MAS1L	HGNC	ENSG00000204687	tier1	-	-	32	0	0.00	29	6	17.14
