Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source	ensembl_gene_id	tier	title	header	normal_ref_reads	normal_var_reads	normal_VAF	tumor_ref_reads	tumor_var_reads	tumor_VAF
CABLES1	0	genome.wustl.edu	37	18	20716015	20716023	+	In_Frame_Del	DEL	GGCGCCGGC	GGCGCCGGC	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	GGCGCCGGC	GGCGCCGGC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	18	20716015	20716023	GGCGCCGGC	-	DEL	CABLES1	ENST00000256925	human	ensembl	74_37	+1	known	in_frame_del	c.289_297	p.GGA99in_frame_del	0.983:0.981:0.990:0.998:0.999:0.997:0.999:0.999:0.997	pirsf_Cdk5/c-Abl_linker_Cables	pfam_Cyclin_N,superfamily_Cyclin-like,pirsf_Cdk5/c-Abl_linker_Cables	-	no_errors	CABLES1	HGNC	ENSG00000134508	tier1			NA	NA	NA	NA	NA	NA
FAM120C	0	genome.wustl.edu	37	X	54185981	54185981	+	Silent	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	X	54185981	54185981	G	T	SNP	FAM120C	ENST00000375180	human	ensembl	74_37	-1	known	silent	c.768	p.G256	0.964	NULL	NULL	-	no_errors	FAM120C	HGNC	ENSG00000184083	tier1	-	-	38	0	0.00	36	4	10.00
CA4	0	genome.wustl.edu	37	17	58235772	58235772	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	17	58235772	58235772	G	A	SNP	CA4	ENST00000300900	human	ensembl	74_37	+1	known	missense	c.709	p.V237M	0.977	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a	-	no_errors	CA4	HGNC	ENSG00000167434	tier1	-	-	24	0	0.00	46	10	17.86
GOLGA6L4	0	genome.wustl.edu	37	15	82932257	82932288	+	RNA	DEL	ACACAAATAAATTTAAACTATAAATTAGAAAC	ACACAAATAAATTTAAACTATAAATTAGAAAC	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	ACACAAATAAATTTAAACTATAAATTAGAAAC	ACACAAATAAATTTAAACTATAAATTAGAAAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	15	82932257	82932288	ACACAAATAAATTTAAACTATAAATTAGAAAC	-	DEL	GOLGA6L4	ENST00000560844	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.140:0.148:0.154:0.160:0.165:0.169:0.172:0.175:0.177:0.178:0.179:0.179:0.180:0.179:0.135:0.131:0.126:0.121:0.112:0.097:0.077:0.050:0.041:0.040:0.045:0.047:0.048:0.046:0.049:0.052:0.050:0.046	-	-	-	no_errors	RP13-996F3.5	Clone_based_vega_gene	ENSG00000215749	tier1			NA	NA	NA	NA	NA	NA
TBL1Y	0	genome.wustl.edu	37	Y	6948851	6948851	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	Y	6948851	6948851	G	T	SNP	TBL1Y	ENST00000346432	human	ensembl	74_37	+1	known	missense	c.1034	p.R345M	0.987	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_LisH_dimerisation_subgr,superfamily_WD40_repeat_dom,smart_LisH_dimerisation,smart_WD40_repeat,pfscan_LisH_dimerisation,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	TBL1Y	HGNC	ENSG00000092377	tier1	-	-	22	0	0.00	14	3	17.65
PPM1B	0	genome.wustl.edu	37	2	44459458	44459458	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	2	44459458	44459458	G	A	SNP	PPM1B	ENST00000378551	human	ensembl	74_37	+1	known	missense	c.1138	p.A380T	1.000	NULL	pfam_PP2C-like_dom,pfam_PP2C_C,superfamily_PP2C-like_dom,superfamily_PP2C_C,smart_PP2C-like_dom	-	no_errors	PPM1B	HGNC	ENSG00000138032	tier1	-	-	52	0	0.00	28	4	12.50
EDAR	0	genome.wustl.edu	37	2	109545698	109545698	+	Silent	SNP	T	T	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	2	109545698	109545698	T	A	SNP	EDAR	ENST00000376651	human	ensembl	74_37	-1	known	silent	c.312	p.P104	0.011	NULL	pfam_Death_domain,superfamily_DEATH-like_dom	-	no_errors	EDAR	HGNC	ENSG00000135960	tier1	-	-	76	0	0.00	54	5	8.47
TACR1	0	genome.wustl.edu	37	2	75425694	75425698	+	Frame_Shift_Del	DEL	TGGAG	TGGAG	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	TGGAG	TGGAG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	2	75425694	75425698	TGGAG	-	DEL	TACR1	ENST00000305249	human	ensembl	74_37	-1	known	frame_shift_del	c.367_363	p.S122fs	1.000:1.000:1.000:1.000:1.000	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn,prints_NPY_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_NK1_rcpt,prints_Neurokn_rcpt,prints_GPCR_Rhodpsn,prints_NPY_rcpt,prints_NK3_rcpt	-	no_errors	TACR1	HGNC	ENSG00000115353	tier1			NA	NA	NA	NA	NA	NA
TRHDE	0	genome.wustl.edu	37	12	73050729	73050729	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	12	73050729	73050729	A	G	SNP	TRHDE	ENST00000261180	human	ensembl	74_37	+1	known	missense	c.2872	p.N958D	1.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	tier1	-	-	158	0	0.00	91	15	14.15
DPY19L3	0	genome.wustl.edu	37	19	32899229	32899229	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	19	32899229	32899229	G	C	SNP	DPY19L3	ENST00000342179	human	ensembl	74_37	+1	known	missense	c.70	p.E24Q	1.000	NULL	pfam_Dpy-19	-	no_errors	DPY19L3	HGNC	ENSG00000178904	tier1	-	-	115	0	0.00	132	38	22.22
ABCB5	0	genome.wustl.edu	37	7	20739461	20739461	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	7	20739461	20739461	A	G	SNP	ABCB5	ENST00000258738	human	ensembl	74_37	+1	known	missense	c.833	p.N278S	0.409	pfam_ABC_transptr_TM_dom,superfamily_ABC1_TM_dom,pfscan_ABC1_TM_dom	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_P-loop_NTPase,superfamily_ABC1_TM_dom,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC1_TM_dom	-	no_errors	ABCB5	HGNC	ENSG00000004846	tier1	-	-	111	0	0.00	45	6	11.76
RMDN2	0	genome.wustl.edu	37	2	38178783	38178783	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	2	38178783	38178783	T	-	DEL	RMDN2	ENST00000234195	human	ensembl	74_37	+1	known	frame_shift_del	c.425	p.F144fs	0.000	NULL	NULL	-	no_errors	RMDN2	HGNC	ENSG00000115841	tier1			33	0	0.00	28	3	9.68
GOLGA6L6	0	genome.wustl.edu	37	15	20739938	20739943	+	In_Frame_Del	DEL	CTCCTG	CTCCTG	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	CTCCTG	CTCCTG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	15	20739938	20739943	CTCCTG	-	DEL	GOLGA6L6	ENST00000427390	human	ensembl	74_37	-1	known	in_frame_del	c.1812_1807	p.QE603in_frame_del	0.795:0.773:0.743:0.715:0.709:0.706	NULL	superfamily_Ribosomal_L7/12_C/ClpS-like,prints_Tropomyosin	-	no_errors	GOLGA6L6	HGNC	ENSG00000215405	tier1			NA	NA	NA	NA	NA	NA
LRRIQ1	0	genome.wustl.edu	37	12	85546891	85546891	+	Silent	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	12	85546891	85546891	G	A	SNP	LRRIQ1	ENST00000393217	human	ensembl	74_37	+1	known	silent	c.4509	p.L1503	0.018	NULL	pfam_IQ_motif_EF-hand-BS,superfamily_P-loop_NTPase,smart_IQ_motif_EF-hand-BS,smart_Leu-rich_rpt_typical-subtyp,pfscan_IQ_motif_EF-hand-BS	-	no_errors	LRRIQ1	HGNC	ENSG00000133640	tier1	-	-	153	0	0.00	57	1029	94.66
MPZL1	0	genome.wustl.edu	37	1	167757562	167757562	+	RNA	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	167757562	167757562	G	A	SNP	MPZL1	ENST00000403379	human	ensembl	74_37	+1	putative	rna	NULL	NULL	0.359	-	-	-	no_errors	MPZL1	HGNC	ENSG00000197965	tier1	-	-	53	0	0.00	53	81	60.00
PTGS1	0	genome.wustl.edu	37	9	125148995	125148995	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	9	125148995	125148995	G	T	SNP	PTGS1	ENST00000362012	human	ensembl	74_37	+1	known	missense	c.1280	p.R427L	0.939	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_EG-like_dom,pfscan_Haem_peroxidase_animal,prints_Haem_peroxidase_animal_subgr	-	no_errors	PTGS1	HGNC	ENSG00000095303	tier1	-	-	50	0	0.00	37	4	9.76
ISCA1	0	genome.wustl.edu	37	9	88886929	88886929	+	Frame_Shift_Del	DEL	A	A	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	9	88886929	88886929	A	-	DEL	ISCA1	ENST00000452279	human	ensembl	74_37	-1	known	frame_shift_del	c.375	p.Q126fs	0.997	pfam_FeS_biogenesis,superfamily_FeS_biogenesis,tigrfam_FeS_cluster_insertion	pfam_FeS_biogenesis,superfamily_FeS_biogenesis,tigrfam_FeS_cluster_insertion	-	no_errors	ISCA1	HGNC	ENSG00000135070	tier1			122	0	0.00	65	13	16.67
ISCA1	0	genome.wustl.edu	37	9	88886926	88886926	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	9	88886926	88886926	T	-	DEL	ISCA1	ENST00000452279	human	ensembl	74_37	-1	known	frame_shift_del	c.378	p.D127fs	1.000	pfam_FeS_biogenesis,superfamily_FeS_biogenesis,tigrfam_FeS_cluster_insertion	pfam_FeS_biogenesis,superfamily_FeS_biogenesis,tigrfam_FeS_cluster_insertion	-	no_errors	ISCA1	HGNC	ENSG00000135070	tier1			119	0	0.00	67	13	16.25
CELP	0	genome.wustl.edu	37	9	135962555	135962556	+	RNA	INS	-	-	CTGCC			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	9	135962555	135962556	-	CTGCC	INS	CELP	ENST00000411440	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.038:0.013	-	-	-	no_errors	CELP	HGNC	ENSG00000170827	tier1			NA	NA	NA	NA	NA	NA
PHEX	0	genome.wustl.edu	37	X	22263450	22263450	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	X	22263450	22263450	G	T	SNP	PHEX	ENST00000379374	human	ensembl	74_37	+1	known	missense	c.2071	p.V691L	1.000	pfam_Peptidase_M13_C	pfam_Peptidase_M13_N,pfam_Peptidase_M13_C,prints_Peptidase_M13_C	-	no_errors	PHEX	HGNC	ENSG00000102174	tier1	-	-	49	0	0.00	24	4	14.29
PLK3	0	genome.wustl.edu	37	1	45271296	45271296	+	Silent	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	45271296	45271296	G	T	SNP	PLK3	ENST00000372201	human	ensembl	74_37	+1	known	silent	c.1887	p.L629	0.944	pfam_POLO_box_duplicated_dom,pfscan_POLO_box_duplicated_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK3	HGNC	ENSG00000173846	tier1	-	-	45	0	0.00	14	3	17.65
BCL9L	0	genome.wustl.edu	37	11	118770652	118770652	+	Frame_Shift_Del	DEL	G	G	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	11	118770652	118770652	G	-	DEL	BCL9L	ENST00000334801	human	ensembl	74_37	-1	known	frame_shift_del	c.3380	p.P1127fs	0.996	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	tier1			28	0	0.00	12	2	14.29
ATRX	0	genome.wustl.edu	37	X	76937678	76937678	+	Nonsense_Mutation	SNP	C	C	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	X	76937678	76937678	C	A	SNP	ATRX	ENST00000373344	human	ensembl	74_37	-1	known	nonsense	c.3070	p.E1024*	0.416	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_P-loop_NTPase,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	tier1	-	-	27	0	0.00	0	17	100.00
KSR2	0	genome.wustl.edu	37	12	118199117	118199117	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	12	118199117	118199117	C	T	SNP	KSR2	ENST00000339824	human	ensembl	74_37	-1	known	missense	c.685	p.V229M	1.000	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_dom	-	no_errors	KSR2	HGNC	ENSG00000171435	tier1	-	-	71	0	0.00	39	16	29.09
EPHA1	0	genome.wustl.edu	37	7	143095499	143095499	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	7	143095499	143095499	G	A	SNP	EPHA1	ENST00000275815	human	ensembl	74_37	-1	known	missense	c.1379	p.P460L	0.686	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Kinase-like_dom,superfamily_Galactose-bd-like,superfamily_SAM/pointed,superfamily_Fibronectin_type3,superfamily_Growth_fac_rcpt_N_dom,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_dom	-	no_errors	EPHA1	HGNC	ENSG00000146904	tier1	rs202178565	-	57	0	0.00	25	11	30.56
VPS13C	0	genome.wustl.edu	37	15	62234079	62234079	+	Missense_Mutation	SNP	G	G	C			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	15	62234079	62234079	G	C	SNP	VPS13C	ENST00000261517	human	ensembl	74_37	-1	known	missense	c.5336	p.A1779G	1.000	NULL	pfam_VPSAP_dom,pfam_Autophagy-rel_C	-	no_errors	VPS13C	HGNC	ENSG00000129003	tier1	-	-	79	0	0.00	42	5	10.20
APBA1	0	genome.wustl.edu	37	9	72071280	72071280	+	Silent	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	9	72071280	72071280	C	T	SNP	APBA1	ENST00000265381	human	ensembl	74_37	-1	known	silent	c.1671	p.L557	0.998	pfam_PTB/PI_dom,smart_PTB/PI_dom,pfscan_PTB/PI_dom	pfam_PTB/PI_dom,pfam_PDZ,superfamily_PDZ,smart_PTB/PI_dom,smart_PDZ,pfscan_PDZ,pfscan_PTB/PI_dom	-	no_errors	APBA1	HGNC	ENSG00000107282	tier1	-	-	77	0	0.00	34	21	38.18
SLC16A10	0	genome.wustl.edu	37	6	111498746	111498746	+	Missense_Mutation	SNP	A	A	C			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	6	111498746	111498746	A	C	SNP	SLC16A10	ENST00000368851	human	ensembl	74_37	+1	known	missense	c.820	p.K274Q	1.000	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC16A10	HGNC	ENSG00000112394	tier1	-	-	20	0	0.00	14	8	36.36
LOC100506895	0	genome.wustl.edu	37	7	43548735	43548735	+	RNA	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	7	43548735	43548735	G	T	SNP	LOC100506895	ENST00000436105	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	AC011738.4	Clone_based_vega_gene	ENSG00000231638	tier1	-	-	44	0	0.00	33	4	10.81
ERBB3	0	genome.wustl.edu	37	12	56486837	56486837	+	Silent	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	12	56486837	56486837	C	T	SNP	ERBB3	ENST00000267101	human	ensembl	74_37	+1	known	silent	c.1251	p.T417	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_EGF_rcpt_L	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt_N_dom,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	tier1	-	-	66	0	0.00	26	21	43.75
C22orf42	0	genome.wustl.edu	37	22	32545908	32545908	+	RNA	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	22	32545908	32545908	C	T	SNP	C22orf42	ENST00000490640	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	C22orf42	HGNC	ENSG00000205856	tier1	-	-	43	0	0.00	12	19	61.29
COL21A1	0	genome.wustl.edu	37	6	55956320	55956320	+	RNA	SNP	T	T	C			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	6	55956320	55956320	T	C	SNP	COL21A1	ENST00000467045	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	COL21A1	HGNC	ENSG00000124749	tier1	-	-	35	0	0.00	20	13	39.39
STEAP2	0	genome.wustl.edu	37	7	89854616	89854616	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	7	89854616	89854616	G	T	SNP	STEAP2	ENST00000287908	human	ensembl	74_37	+1	known	missense	c.220	p.V74L	1.000	NULL	pfam_Fe3_Rdtase_TM_dom	-	no_errors	STEAP2	HGNC	ENSG00000157214	tier1	-	-	53	0	0.00	25	21	45.65
DGKD	0	genome.wustl.edu	37	2	234343445	234343445	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	2	234343445	234343445	G	T	SNP	DGKD	ENST00000264057	human	ensembl	74_37	+1	known	missense	c.484	p.G162W	1.000	NULL	pfam_Diacylglycerol_kin_accessory,pfam_Diacylglycerol_kinase_cat_dom,pfam_SAM_2,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_SAM_type1,pfam_Pleckstrin_homology,superfamily_SAM/pointed,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kin_accessory,smart_SAM,pfscan_Pleckstrin_homology,pfscan_SAM,pfscan_Prot_Kinase_C-like_PE/DAG-bd	-	no_errors	DGKD	HGNC	ENSG00000077044	tier1	-	-	44	0	0.00	40	4	9.09
SALL2	0	genome.wustl.edu	37	14	21992685	21992685	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	14	21992685	21992685	G	A	SNP	SALL2	ENST00000327430	human	ensembl	74_37	-1	known	missense	c.1177	p.R393C	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821	tier1	-	-	22	0	0.00	17	12	41.38
MEI1	0	genome.wustl.edu	37	22	42166717	42166717	+	Silent	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	22	42166717	42166717	C	T	SNP	MEI1	ENST00000401548	human	ensembl	74_37	+1	known	silent	c.2296	p.L766	0.972	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	MEI1	HGNC	ENSG00000167077	tier1	-	-	14	0	0.00	4	6	60.00
PARP3	0	genome.wustl.edu	37	3	51978127	51978127	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	3	51978127	51978127	C	T	SNP	PARP3	ENST00000398755	human	ensembl	74_37	+1	known	missense	c.227	p.T76I	1.000	pfam_WGR_domain,superfamily_WGR_domain,smart_WGR_domain	pfam_Poly(ADP-ribose)pol_cat_dom,pfam_Poly(ADP-ribose)pol_reg_dom,pfam_WGR_domain,superfamily_Poly(ADP-ribose)pol_reg_dom,superfamily_WGR_domain,smart_WGR_domain,pfscan_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_reg_dom	-	no_errors	PARP3	HGNC	ENSG00000041880	tier1	-	-	63	0	0.00	30	4	11.76
KIR2DL1	0	genome.wustl.edu	37	19	55281331	55281331	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	19	55281331	55281331	G	A	SNP	KIR2DL1	ENST00000336077	human	ensembl	74_37	+1	known	missense	c.29	p.C10Y	0.960	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL1	HGNC	ENSG00000125498	tier1	-	-	54	0	0.00	7	28	80.00
ISCA1	0	genome.wustl.edu	37	9	88886934	88886943	+	Frame_Shift_Del	DEL	CTTCTTCATC	CTTCTTCATC	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	CTTCTTCATC	CTTCTTCATC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	9	88886934	88886943	CTTCTTCATC	-	DEL	ISCA1	ENST00000452279	human	ensembl	74_37	-1	known	frame_shift_del	c.370_361	p.D121fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	pfam_FeS_biogenesis,superfamily_FeS_biogenesis,tigrfam_FeS_cluster_insertion	pfam_FeS_biogenesis,superfamily_FeS_biogenesis,tigrfam_FeS_cluster_insertion	-	no_errors	ISCA1	HGNC	ENSG00000135070	tier1			NA	NA	NA	NA	NA	NA
MECR	0	genome.wustl.edu	37	1	29542523	29542523	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	29542523	29542523	C	T	SNP	MECR	ENST00000263702	human	ensembl	74_37	-1	known	missense	c.400	p.G134S	1.000	superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	MECR	HGNC	ENSG00000116353	tier1	-	-	45	0	0.00	18	13	41.94
TUBA3D	0	genome.wustl.edu	37	2	132237643	132237643	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	2	132237643	132237643	C	T	SNP	TUBA3D	ENST00000321253	human	ensembl	74_37	+1	known	missense	c.377	p.A126V	1.000	pfam_Tubulin_FtsZ_GTPase,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Alpha_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Beta_tubulin	-	no_errors	TUBA3D	HGNC	ENSG00000075886	tier1	rs72992288	-	42	0	0.00	73	12	14.12
LILRA1	0	genome.wustl.edu	37	19	55106778	55106778	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	19	55106778	55106778	G	T	SNP	LILRA1	ENST00000251372	human	ensembl	74_37	+1	known	missense	c.572	p.R191L	0.000	smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt	smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like_dom	-	no_errors	LILRA1	HGNC	ENSG00000104974	tier1	-	-	82	0	0.00	19	17	45.95
SIGLEC7	0	genome.wustl.edu	37	19	51650058	51650058	+	Missense_Mutation	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	19	51650058	51650058	G	A	SNP	SIGLEC7	ENST00000317643	human	ensembl	74_37	+1	known	missense	c.1075	p.A359T	0.005	NULL	pfam_Ig_V-set,pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like_dom	-	no_errors	SIGLEC7	HGNC	ENSG00000168995	tier1	-	-	37	0	0.00	41	9	18.00
RNF212	0	genome.wustl.edu	37	4	1087327	1087328	+	In_Frame_Ins	INS	-	-	CTGCCCAGGCTGGAGCCAGCC			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	4	1087327	1087328	-	CTGCCCAGGCTGGAGCCAGCC	INS	RNF212	ENST00000333673	human	ensembl	74_37	-1	known	in_frame_ins	c.722_721	p.S241in_frame_insWLAPAWAA	0.085:0.000	NULL	pfscan_Znf_RING	-	no_errors	RNF212	HGNC	ENSG00000178222	tier1			NA	NA	NA	NA	NA	NA
KIF26A	0	genome.wustl.edu	37	14	104646007	104646007	+	Silent	SNP	C	C	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	14	104646007	104646007	C	A	SNP	KIF26A	ENST00000423312	human	ensembl	74_37	+1	known	silent	c.5529	p.A1843	1.000	NULL	pfam_Kinesin_motor_dom,superfamily_P-loop_NTPase,smart_Kinesin_motor_dom,prints_Kinesin_motor_dom,pfscan_Kinesin_motor_dom	-	no_errors	KIF26A	HGNC	ENSG00000066735	tier1	-	-	39	0	0.00	24	20	45.45
ISCA1	0	genome.wustl.edu	37	9	88886926	88886927	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	9	88886926	88886927	-	GA	INS	ISCA1	ENST00000452279	human	ensembl	74_37	-1	known	frame_shift_ins	c.378_377	p.Q126fs	1.000:1.000	pfam_FeS_biogenesis,superfamily_FeS_biogenesis,tigrfam_FeS_cluster_insertion	pfam_FeS_biogenesis,superfamily_FeS_biogenesis,tigrfam_FeS_cluster_insertion	-	no_errors	ISCA1	HGNC	ENSG00000135070	tier1			119	0	0.00	72	8	10.00
LNPEP	0	genome.wustl.edu	37	5	96358015	96358015	+	Missense_Mutation	SNP	T	T	G			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	5	96358015	96358015	T	G	SNP	LNPEP	ENST00000231368	human	ensembl	74_37	+1	known	missense	c.2388	p.F796L	0.121	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	LNPEP	HGNC	ENSG00000113441	tier1	-	-	52	0	0.00	27	11	28.95
RUNX3	0	genome.wustl.edu	37	1	25291022	25291022	+	Nonsense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	25291022	25291022	G	T	SNP	RUNX3	ENST00000338888	human	ensembl	74_37	-1	known	nonsense	c.41	p.S14*	0.965	pirsf_TF_Runt-rel_RUNX	pfam_Runt_dom,pfam_RunxI_C_dom,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_Runt_dom,prints_AML1_Runt	-	no_errors	RUNX3	HGNC	ENSG00000020633	tier1	-	-	80	0	0.00	71	31	30.39
TUBE1	0	genome.wustl.edu	37	6	112406880	112406880	+	RNA	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	6	112406880	112406880	C	T	SNP	TUBE1	ENST00000441191	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	TUBE1	HGNC	ENSG00000074935	tier1	-	-	76	0	0.00	36	13	26.53
OR6F1	0	genome.wustl.edu	37	1	247875753	247875753	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	247875753	247875753	T	-	DEL	OR6F1	ENST00000302084	human	ensembl	74_37	-1	known	frame_shift_del	c.305	p.Y102fs	0.784	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR6F1	HGNC	ENSG00000169214	tier1			47	0	0.00	11	2	15.38
PLEC	0	genome.wustl.edu	37	8	144992885	144992910	+	Frame_Shift_Del	DEL	GCCTGGAACCGGGCAGGTAGACACCA	GCCTGGAACCGGGCAGGTAGACACCA	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	GCCTGGAACCGGGCAGGTAGACACCA	GCCTGGAACCGGGCAGGTAGACACCA					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	8	144992885	144992910	GCCTGGAACCGGGCAGGTAGACACCA	-	DEL	PLEC	ENST00000322810	human	ensembl	74_37	-1	known	frame_shift_del	c.11515_11490	p.G3831fs	1.000:0.997:0.998:0.999:0.999:1.000:0.998:0.994:0.991:0.879:0.018:0.509:0.484:0.206:0.181:0.005:0.013:0.254:0.266:0.222:0.313:0.008:0.009:0.996:0.996:0.009	pfam_Plectin_repeat,smart_Plectin_repeat	pfam_Plectin_repeat,pfam_CH-domain,pfam_S10_plectin_N,superfamily_CH-domain,superfamily_Chorismate_mutase_type_II,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,pfscan_CH-domain	-	no_errors	PLEC	HGNC	ENSG00000178209	tier1			NA	NA	NA	NA	NA	NA
CCDC80	0	genome.wustl.edu	37	3	112357638	112357638	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	3	112357638	112357638	G	T	SNP	CCDC80	ENST00000206423	human	ensembl	74_37	-1	known	missense	c.1115	p.A372D	0.796	NULL	NULL	-	no_errors	CCDC80	HGNC	ENSG00000091986	tier1	-	-	26	0	0.00	28	4	12.50
THRB	0	genome.wustl.edu	37	3	24169081	24169081	+	Silent	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	3	24169081	24169081	G	A	SNP	THRB	ENST00000356447	human	ensembl	74_37	-1	known	silent	c.1053	p.D351	0.894	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_ThyrH_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	THRB	HGNC	ENSG00000151090	tier1	rs115445992	GMAF=0.0005	100	0	0.00	61	45	42.45
TM9SF2	0	genome.wustl.edu	37	13	100199256	100199256	+	Frame_Shift_Del	DEL	T	T	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	13	100199256	100199256	T	-	DEL	TM9SF2	ENST00000376387	human	ensembl	74_37	+1	known	frame_shift_del	c.1168	p.L391fs	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304	tier1			26	0	0.00	17	2	10.53
TBX19	0	genome.wustl.edu	37	1	168269673	168269673	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	168269673	168269673	G	T	SNP	TBX19	ENST00000367821	human	ensembl	74_37	+1	known	missense	c.679	p.D227Y	1.000	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box,prints_TF_Brachyury	-	no_errors	TBX19	HGNC	ENSG00000143178	tier1	-	-	53	0	0.00	30	4	11.76
PLK2	0	genome.wustl.edu	37	5	57753404	57753404	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	5	57753404	57753404	T	C	SNP	PLK2	ENST00000274289	human	ensembl	74_37	-1	known	missense	c.720	p.I240M	1.000	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_dom	pfam_Prot_kinase_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_dom	-	no_errors	PLK2	HGNC	ENSG00000145632	tier1	-	-	30	0	0.00	23	4	14.81
TIE1	0	genome.wustl.edu	37	1	43779725	43779726	+	RNA	DEL	TG	TG	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	43779725	43779726	TG	-	DEL	TIE1	ENST00000471187	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.002:0.002	-	-	-	no_errors	TIE1	HGNC	ENSG00000066056	tier1			18	0	0.00	7	2	22.22
OR4S1	0	genome.wustl.edu	37	11	48328685	48328685	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	11	48328685	48328685	G	T	SNP	OR4S1	ENST00000319988	human	ensembl	74_37	+1	known	missense	c.911	p.R304M	0.000	NULL	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR4S1	HGNC	ENSG00000176555	tier1	-	-	30	0	0.00	16	3	15.79
ARHGEF11	0	genome.wustl.edu	37	1	156917189	156917189	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	156917189	156917189	T	C	SNP	ARHGEF11	ENST00000368194	human	ensembl	74_37	-1	known	missense	c.2395	p.I799V	0.675	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_RGS-like_dom,pfam_DH-domain,pfam_PDZ,pfam_RGS_dom,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,superfamily_PDZ,smart_PDZ,smart_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Regulat_G_prot_signal_superfam,pfscan_DH-domain	-	no_errors	ARHGEF11	HGNC	ENSG00000132694	tier1	-	-	32	0	0.00	24	15	38.46
APC	0	genome.wustl.edu	37	5	112116600	112116600	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	5	112116600	112116600	G	T	SNP	APC	ENST00000257430	human	ensembl	74_37	+1	known	missense	c.645	p.Q215H	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_APC_dom,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	tier1	-	-	121	0	0.00	103	18	14.88
HCLS1	0	genome.wustl.edu	37	3	121351315	121351316	+	In_Frame_Ins	INS	-	-	GGCTCAGGCTCA			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	3	121351315	121351316	-	GGCTCAGGCTCA	INS	HCLS1	ENST00000314583	human	ensembl	74_37	-1	known	in_frame_ins	c.1104_1103	p.372in_frame_insPEPE	0.001:0.003	NULL	pfam_Hs1_Cortactin,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_Hs1_Cortactin,pfscan_SH3_domain,prints_SH3_domain,prints_p67phox	-	no_errors	HCLS1	HGNC	ENSG00000180353	tier1			NA	NA	NA	NA	NA	NA
LOC101927832	0	genome.wustl.edu	37	3	142720221	142720222	+	RNA	INS	-	-	GGACAACGA			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	3	142720221	142720222	-	GGACAACGA	INS	LOC101927832	ENST00000595248	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.005:0.015	-	-	-	no_errors	RP11-372E1.6	Clone_based_vega_gene	ENSG00000241570	tier1			NA	NA	NA	NA	NA	NA
NBPF9	0	genome.wustl.edu	37	1	144815234	144815234	+	RNA	SNP	C	C	G			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	144815234	144815234	C	G	SNP	NBPF9	ENST00000483630	human	ensembl	74_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	NBPF9	HGNC	ENSG00000168614	tier1	-	-	8	0	0.00	4	47	92.16
MYADML	0	genome.wustl.edu	37	2	33953017	33953017	+	RNA	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	2	33953017	33953017	G	A	SNP	MYADML	ENST00000474610	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.815	-	-	-	no_errors	MYADML	HGNC	ENSG00000239649	tier1	-	-	28	0	0.00	21	9	30.00
USP27X-AS1	0	genome.wustl.edu	37	X	49641832	49641833	+	RNA	INS	-	-	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	X	49641832	49641833	-	A	INS	USP27X-AS1	ENST00000437322	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	USP27X-AS1	HGNC	ENSG00000234390	tier1			8	0	0.00	6	2	25.00
CTBP2	0	genome.wustl.edu	37	10	126715159	126715160	+	In_Frame_Ins	INS	-	-	GCCGCAGGCTGGGGCTGCAGG			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	10	126715159	126715160	-	GCCGCAGGCTGGGGCTGCAGG	INS	CTBP2	ENST00000309035	human	ensembl	74_37	-1	known	in_frame_ins	c.1170_1169	p.391in_frame_insLQPQPAA	0.257:0.112	NULL	pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_D-isomer_2_OHA_DH_cat_dom	-	no_errors	CTBP2	HGNC	ENSG00000175029	tier1			NA	NA	NA	NA	NA	NA
CYB5R3	0	genome.wustl.edu	37	22	43015932	43015932	+	Silent	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	22	43015932	43015932	G	T	SNP	CYB5R3	ENST00000361740	human	ensembl	74_37	-1	known	silent	c.852	p.G284	1.000	pfam_OxRdtase_FAD/NAD-bd,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	pfam_OxRdtase_FAD-bd_dom,pfam_OxRdtase_FAD/NAD-bd,superfamily_Riboflavin_synthase-like_b-brl,prints_NADH-Cyt_B5_reductase,prints_Flavoprot_Pyr_Nucl_cyt_Rdtase	-	no_errors	CYB5R3	HGNC	ENSG00000100243	tier1	-	-	66	0	0.00	24	4	14.29
HEATR2	0	genome.wustl.edu	37	7	769393	769393	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	7	769393	769393	C	T	SNP	HEATR2	ENST00000297440	human	ensembl	74_37	+1	known	missense	c.689	p.A230V	1.000	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	HEATR2	HGNC	ENSG00000164818	tier1	-	-	75	0	0.00	41	4	8.89
ENSG00000265865	0	genome.wustl.edu	37	7	62528467	62528467	+	RNA	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	7	62528467	62528467	C	T	SNP	ENSG00000265865	ENST00000581408	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.006	-	-	-	no_errors	AC069285.1	Clone_based_ensembl_gene	ENSG00000265865	tier1	-	-	29	0	0.00	8	3	27.27
MFGE8	0	genome.wustl.edu	37	15	89450444	89450444	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	15	89450444	89450444	G	T	SNP	MFGE8	ENST00000268150	human	ensembl	74_37	-1	known	missense	c.369	p.D123E	0.272	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	pfam_Coagulation_fac_5/8-C_type_dom,pfam_EG-like_dom,superfamily_Galactose-bd-like,smart_EG-like_dom,smart_Coagulation_fac_5/8-C_type_dom,pfscan_EG-like_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	MFGE8	HGNC	ENSG00000140545	tier1	-	-	35	0	0.00	34	4	10.53
BTBD18	0	genome.wustl.edu	37	11	57513163	57513163	+	Silent	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	11	57513163	57513163	G	A	SNP	BTBD18	ENST00000422652	human	ensembl	74_37	-1	known	silent	c.582	p.N194	0.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	BTBD18	HGNC	ENSG00000233436	tier1	-	-	58	0	0.00	45	4	8.16
ENSG00000216197	0	genome.wustl.edu	37	21	43720386	43720387	+	RNA	DEL	GT	GT	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	GT	GT					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	21	43720386	43720387	GT	-	DEL	ENSG00000216197	ENST00000401378	human	ensembl	74_37	-1	novel	rna	NULL	NULL	0.001:0.000	-	-	-	no_errors	AP001623.1	Clone_based_ensembl_gene	ENSG00000216197	tier1			26	0	0.00	27	3	10.00
HNRNPKP3	0	genome.wustl.edu	37	11	43284496	43284496	+	RNA	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	11	43284496	43284496	G	T	SNP	HNRNPKP3	ENST00000511537	human	ensembl	74_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	HNRNPKP3	HGNC	ENSG00000251557	tier1	-	-	22	0	0.00	9	3	25.00
NUDT16	0	genome.wustl.edu	37	3	131101009	131101009	+	Silent	SNP	C	C	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	3	131101009	131101009	C	A	SNP	NUDT16	ENST00000521288	human	ensembl	74_37	+1	known	silent	c.258	p.A86	0.752	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	NUDT16	HGNC	ENSG00000198585	tier1	-	-	53	0	0.00	67	17	20.00
EPC1	0	genome.wustl.edu	37	10	32582546	32582546	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	10	32582546	32582546	G	T	SNP	EPC1	ENST00000263062	human	ensembl	74_37	-1	known	missense	c.433	p.R145S	1.000	pfam_Enhancer_polycomb-like_N	pfam_Enhancer_polycomb_C,pfam_Enhancer_polycomb-like_N	-	no_errors	EPC1	HGNC	ENSG00000120616	tier1	-	-	40	0	0.00	25	3	10.71
MRPL44	0	genome.wustl.edu	37	2	224824683	224824683	+	Missense_Mutation	SNP	G	G	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	2	224824683	224824683	G	T	SNP	MRPL44	ENST00000258383	human	ensembl	74_37	+1	known	missense	c.612	p.Q204H	0.983	superfamily_RNase_III_dom	superfamily_RNase_III_dom,pfscan_dsRNA-bd_dom	-	no_errors	MRPL44	HGNC	ENSG00000135900	tier1	-	-	36	0	0.00	31	4	11.43
ENSG00000215941	0	genome.wustl.edu	37	3	38948849	38948856	+	RNA	DEL	ACACACAC	ACACACAC	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	ACACACAC	ACACACAC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	3	38948849	38948856	ACACACAC	-	DEL	ENSG00000215941	ENST00000401122	human	ensembl	74_37	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	-	-	-	no_errors	AC116038.1	Clone_based_ensembl_gene	ENSG00000215941	tier1			NA	NA	NA	NA	NA	NA
IFT80	0	genome.wustl.edu	37	3	160083847	160083847	+	Missense_Mutation	SNP	T	T	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	3	160083847	160083847	T	A	SNP	IFT80	ENST00000483754	human	ensembl	74_37	-1	known	missense	c.1046	p.N349I	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_WD40_repeat_dom,smart_Znf_RING,smart_WD40_repeat,pfscan_Znf_B-box,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	RP11-432B6.3	Clone_based_vega_gene	ENSG00000248710	tier1	-	-	88	0	0.00	44	14	24.14
TTI1	0	genome.wustl.edu	37	20	36641017	36641017	+	Missense_Mutation	SNP	A	A	G			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	20	36641017	36641017	A	G	SNP	TTI1	ENST00000373447	human	ensembl	74_37	-1	known	missense	c.1202	p.L401P	0.997	superfamily_ARM-type_fold,pirsf_UCP005250	superfamily_ARM-type_fold,pirsf_UCP005250	-	no_errors	TTI1	HGNC	ENSG00000101407	tier1	-	-	50	0	0.00	36	4	10.00
IRF2BP2	0	genome.wustl.edu	37	1	234743418	234743418	+	Missense_Mutation	SNP	T	T	C			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	234743418	234743418	T	C	SNP	IRF2BP2	ENST00000366609	human	ensembl	74_37	-1	novel	missense	c.1229	p.N410S	1.000	pfam_Interferon_reg_fac2-bd1_2_Znf	pfam_Interferon_reg_fac2-bd1_2_Znf	-	no_errors	IRF2BP2	HGNC	ENSG00000168264	tier1	-	-	43	0	0.00	13	19	59.38
MUC16	0	genome.wustl.edu	37	19	9071242	9071242	+	Nonsense_Mutation	SNP	T	T	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	19	9071242	9071242	T	A	SNP	MUC16	ENST00000397910	human	ensembl	74_37	-1	known	nonsense	c.16204	p.R5402*	0.000	NULL	pfam_SEA_dom,smart_SEA_dom,pfscan_SEA_dom	-	no_errors	MUC16	HGNC	ENSG00000181143	tier1	-	-	77	0	0.00	37	32	46.38
ASAP3	0	genome.wustl.edu	37	1	23763476	23763476	+	Silent	SNP	G	G	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	23763476	23763476	G	A	SNP	ASAP3	ENST00000336689	human	ensembl	74_37	-1	known	silent	c.1404	p.H468	1.000	pfam_ArfGAP,smart_ArfGAP,pfscan_ArfGAP,prints_ArfGAP	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP3	HGNC	ENSG00000088280	tier1	-	-	15	0	0.00	3	7	70.00
MRPL44	0	genome.wustl.edu	37	2	224824624	224824624	+	Missense_Mutation	SNP	C	C	T			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	2	224824624	224824624	C	T	SNP	MRPL44	ENST00000258383	human	ensembl	74_37	+1	known	missense	c.553	p.P185S	1.000	superfamily_RNase_III_dom	superfamily_RNase_III_dom,pfscan_dsRNA-bd_dom	-	no_errors	MRPL44	HGNC	ENSG00000135900	tier1	-	-	50	0	0.00	17	17	50.00
OR2T8	0	genome.wustl.edu	37	1	248085156	248085156	+	Missense_Mutation	SNP	C	C	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	1	248085156	248085156	C	A	SNP	OR2T8	ENST00000319968	human	ensembl	74_37	+1	known	missense	c.837	p.F279L	0.022	pfam_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_7TM,prints_GPCR_Rhodpsn	pfam_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_7TM,prints_Olfact_rcpt,prints_GPCR_Rhodpsn	-	no_errors	OR2T8	HGNC	ENSG00000177462	tier1	-	-	80	0	0.00	41	7	14.58
ENSG00000272191	0	genome.wustl.edu	37	17	35300495	35300495	+	RNA	DEL	A	A	-			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	17	35300495	35300495	A	-	DEL	ENSG00000272191	ENST00000607336	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors	RP11-445F12.2	Clone_based_vega_gene	ENSG00000272191	tier1			28	0	0.00	4	6	60.00
SETX	0	genome.wustl.edu	37	9	135158547	135158548	+	RNA	INS	-	-	A			TCGA-DX-AB3A-01A-11D-A417-09	TCGA-DX-AB3A-10A-01D-A41A-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8e9ab794-7d43-4210-8c9b-a4175ccb824e	8152de30-f110-467a-934b-9f92131bee55	9	135158547	135158548	-	A	INS	SETX	ENST00000474172	human	ensembl	74_37	-1	known	rna	NULL	NULL	0.028:0.010	-	-	-	no_errors	SETX	HGNC	ENSG00000107290	tier1			32	0	0.00	29	5	14.71
